Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene072735.t1 | PNY12750.1 | 86.4 | 235 | 20 | 2 | 4 | 228 | 8 | 240 | 5.40E-107 | 397.1 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene072735.t1 | Q7KWX9 | 40.3 | 216 | 114 | 3 | 10 | 215 | 6 | 216 | 9.2e-39 | 161.8 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene072735.t1 | A0A2K3PBT7 | 86.4 | 235 | 20 | 2 | 4 | 228 | 8 | 240 | 3.9e-107 | 397.1 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene21912 | MS.gene072735 | PPI |
| MS.gene27712 | MS.gene072735 | PPI |
| MS.gene025936 | MS.gene072735 | PPI |
| MS.gene79599 | MS.gene072735 | PPI |
| MS.gene072735 | MS.gene058147 | PPI |
| MS.gene072735 | MS.gene024734 | PPI |
| MS.gene072735 | MS.gene021698 | PPI |
| MS.gene072735 | MS.gene55323 | PPI |
| MS.gene85900 | MS.gene072735 | PPI |
| MS.gene42834 | MS.gene072735 | PPI |
| MS.gene024471 | MS.gene072735 | PPI |
| MS.gene91519 | MS.gene072735 | PPI |
| MS.gene072735 | MS.gene31317 | PPI |
| MS.gene072735 | MS.gene22822 | PPI |
| MS.gene072735 | MS.gene22316 | PPI |
| MS.gene023858 | MS.gene072735 | PPI |
| MS.gene072735 | MS.gene024674 | PPI |
| MS.gene21656 | MS.gene072735 | PPI |
| MS.gene072735 | MS.gene043576 | PPI |
| MS.gene072735 | MS.gene21710 | PPI |
| MS.gene050621 | MS.gene072735 | PPI |
| MS.gene072735 | MS.gene53118 | PPI |
| MS.gene072735 | MS.gene041852 | PPI |
| MS.gene072735 | MS.gene78555 | PPI |
| MS.gene52227 | MS.gene072735 | PPI |
| MS.gene043239 | MS.gene072735 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene072735.t1 | MTR_5g043110 | 86.809 | 235 | 19 | 2 | 4 | 228 | 8 | 240 | 3.06e-146 | 407 |
| MS.gene072735.t1 | MTR_5g009430 | 82.645 | 121 | 11 | 1 | 118 | 228 | 22 | 142 | 2.39e-64 | 196 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene072735.t1 | AT4G32175 | 64.957 | 234 | 70 | 2 | 1 | 224 | 5 | 236 | 1.88e-108 | 312 |
| MS.gene072735.t1 | AT2G25355 | 64.502 | 231 | 70 | 2 | 7 | 227 | 11 | 239 | 5.67e-108 | 311 |
| MS.gene072735.t1 | AT2G25355 | 65.877 | 211 | 62 | 1 | 27 | 227 | 1 | 211 | 9.49e-102 | 294 |
Find 62 sgRNAs with CRISPR-Local
Find 218 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ACTAACTTATCTACAAAATT+TGG | 0.140723 | 5.3:+3401828 | None:intergenic |
| CATGCAGAGGATTCCGTTCT+TGG | 0.244957 | 5.3:-3401274 | MS.gene072735:CDS |
| TGTCCAGTACTTGATACTTT+AGG | 0.252105 | 5.3:-3398827 | MS.gene072735:CDS |
| GAGATTGCAGTTGGCTTAAA+TGG | 0.270972 | 5.3:-3398788 | MS.gene072735:CDS |
| GTCCAGTACTTGATACTTTA+GGG | 0.280337 | 5.3:-3398826 | MS.gene072735:CDS |
| AGTTTGAACCCAGTATTTAT+TGG | 0.291561 | 5.3:+3401605 | None:intergenic |
| TCTCTAAGCCCAATAAATAC+TGG | 0.308371 | 5.3:-3401614 | MS.gene072735:CDS |
| GTTTGAACCCAGTATTTATT+GGG | 0.332544 | 5.3:+3401606 | None:intergenic |
| AACTTTCTCGTGGATATAAA+AGG | 0.344541 | 5.3:-3400569 | MS.gene072735:CDS |
| TGGCTTAAATGGACGTGTTT+GGG | 0.360369 | 5.3:-3398777 | MS.gene072735:intron |
| TTGGCTTAAATGGACGTGTT+TGG | 0.361897 | 5.3:-3398778 | MS.gene072735:CDS |
| TAGGTGCTTTGCTTTATGTT+CGG | 0.366163 | 5.3:-3399228 | MS.gene072735:CDS |
| AGTGGGAAAGCTGGAGAGTT+TGG | 0.368035 | 5.3:-3399003 | MS.gene072735:CDS |
| CTTCTTGTTCCTCCTTCAAA+TGG | 0.385777 | 5.3:+3400518 | None:intergenic |
| AGGTGCTTTGCTTTATGTTC+GGG | 0.387671 | 5.3:-3399227 | MS.gene072735:CDS |
| CTACCAGTTCTTCCATTTGA+AGG | 0.393463 | 5.3:-3400530 | MS.gene072735:CDS |
| AAACTTTCTTACATCTGATC+TGG | 0.396631 | 5.3:+3401237 | None:intergenic |
| CCTCCTTCAAATGGAAGAAC+TGG | 0.406594 | 5.3:+3400527 | None:intergenic |
| GCCAGACTTCATTATAGAAA+TGG | 0.417911 | 5.3:+3401647 | None:intergenic |
| GATAGCTCAGGATTCATTCC+AGG | 0.436276 | 5.3:+3399190 | None:intergenic |
| CTTAATTGTGTTGTTAGTCA+TGG | 0.438397 | 5.3:+3401701 | None:intergenic |
| GCCATTTCTATAATGAAGTC+TGG | 0.448468 | 5.3:-3401648 | MS.gene072735:CDS |
| TTCCCTAAAGTATCAAGTAC+TGG | 0.458774 | 5.3:+3398824 | None:intergenic |
| TAATGAAGTCTGGCAGGCTT+AGG | 0.461895 | 5.3:-3401638 | MS.gene072735:CDS |
| CTCTCGTTCGAGATTGCAGT+TGG | 0.472739 | 5.3:-3398797 | MS.gene072735:CDS |
| GCTACGATGATAGTTGTAGA+TGG | 0.480268 | 5.3:+3398597 | None:intergenic |
| GAGTTTGGTGCCCTAAAAGA+AGG | 0.483816 | 5.3:-3398988 | MS.gene072735:CDS |
| AAGGAATATACCTAAGTTTG+AGG | 0.485197 | 5.3:-3400498 | MS.gene072735:intron |
| CTCTAAGCCCAATAAATACT+GGG | 0.487763 | 5.3:-3401613 | MS.gene072735:CDS |
| ATCACTGGACCCTCTCCAGC+AGG | 0.494085 | 5.3:+3398514 | None:intergenic |
| TGTTTAGCTAGTGGGAAAGC+TGG | 0.494729 | 5.3:-3399012 | MS.gene072735:intron |
| TAGTCATGGACATGGTAGAT+AGG | 0.509052 | 5.3:+3401715 | None:intergenic |
| ACTAACAACACAATTAAGCT+TGG | 0.517446 | 5.3:-3401696 | MS.gene072735:CDS |
| TGGTGTCCAACAGAAAATAA+TGG | 0.517813 | 5.3:-3398544 | MS.gene072735:CDS |
| GCTTGGAGGTGGTCTACGTC+AGG | 0.522629 | 5.3:-3401679 | MS.gene072735:CDS |
| TTTCTATAATGAAGTCTGGC+AGG | 0.523134 | 5.3:-3401644 | MS.gene072735:CDS |
| CCATCAGTGCATGATAGCTC+AGG | 0.528459 | 5.3:+3399178 | None:intergenic |
| GGCTGAAAACCTGCTGGAGA+GGG | 0.531916 | 5.3:-3398523 | MS.gene072735:CDS |
| AACAACACAATTAAGCTTGG+AGG | 0.534360 | 5.3:-3401693 | MS.gene072735:CDS |
| ATGGTGTTTGTTTAGCTAGT+GGG | 0.536414 | 5.3:-3399020 | MS.gene072735:intron |
| GGGTTCAAACTTCTCAAAAG+AGG | 0.538553 | 5.3:-3401593 | MS.gene072735:CDS |
| GGATATAAAAGGACCTGCAT+TGG | 0.548121 | 5.3:-3400558 | MS.gene072735:CDS |
| AGGTCAATAACTACATCTCC+CGG | 0.553146 | 5.3:+3401735 | None:intergenic |
| AATAATGGCTGAAAACCTGC+TGG | 0.555272 | 5.3:-3398529 | MS.gene072735:CDS |
| ACTGGTAGAAATGCCAATGC+AGG | 0.555975 | 5.3:+3400545 | None:intergenic |
| GTCAACAATTATTCCAAGAA+CGG | 0.559589 | 5.3:+3401261 | None:intergenic |
| ATAGCTCAGGATTCATTCCA+GGG | 0.563878 | 5.3:+3399191 | None:intergenic |
| AGTATCAAGTACTGGACATG+TGG | 0.565192 | 5.3:+3398832 | None:intergenic |
| TGGCTGAAAACCTGCTGGAG+AGG | 0.575734 | 5.3:-3398524 | MS.gene072735:CDS |
| CCTGAGCTATCATGCACTGA+TGG | 0.579665 | 5.3:-3399178 | MS.gene072735:intron |
| CCAGTTCTTCCATTTGAAGG+AGG | 0.584150 | 5.3:-3400527 | MS.gene072735:CDS |
| ATCTGTGCAGAACTTTCTCG+TGG | 0.584398 | 5.3:-3400579 | MS.gene072735:intron |
| GGTTCAAACTTCTCAAAAGA+GGG | 0.587352 | 5.3:-3401592 | MS.gene072735:intron |
| AACACAATTAAGCTTGGAGG+TGG | 0.592912 | 5.3:-3401690 | MS.gene072735:CDS |
| GATAGTTGTAGATGGAGATG+AGG | 0.610158 | 5.3:+3398605 | None:intergenic |
| ACAGTATGTGCCACATGCAG+AGG | 0.619860 | 5.3:-3401287 | MS.gene072735:intron |
| CGGGTCGTTAAAGCAAACCC+TGG | 0.632105 | 5.3:-3399208 | MS.gene072735:CDS |
| CATTTGAAGGAGGAACAAGA+AGG | 0.632473 | 5.3:-3400517 | MS.gene072735:CDS |
| GTATCAAGTACTGGACATGT+GGG | 0.660523 | 5.3:+3398833 | None:intergenic |
| ATAAACTTAGAGACATTGAG+TGG | 0.665626 | 5.3:-3398564 | MS.gene072735:CDS |
| AGAACGGAATCCTCTGCATG+TGG | 0.673300 | 5.3:+3401277 | None:intergenic |
| TGTGTTGTTAGTCATGGACA+TGG | 0.714048 | 5.3:+3401707 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAAATAAAAAAAATTGCC+AGG | + | chr5.3:3400287-3400306 | None:intergenic | 15.0% |
| !!! | TATTTTCTTAGTCAAAATTA+AGG | + | chr5.3:3399553-3399572 | None:intergenic | 15.0% |
| !!! | TTTTTGTATTTATTCTATGT+TGG | - | chr5.3:3399319-3399338 | MS.gene072735:intron | 15.0% |
| !! | AAAACAGCATAATCAAAATA+TGG | + | chr5.3:3399049-3399068 | None:intergenic | 20.0% |
| !! | AACATTATATAACAACAACA+GGG | + | chr5.3:3401051-3401070 | None:intergenic | 20.0% |
| !! | AAGTTTATTCTTTATGAAAC+AGG | + | chr5.3:3398994-3399013 | None:intergenic | 20.0% |
| !! | ACTAACTTATCTACAAAATT+TGG | + | chr5.3:3398533-3398552 | None:intergenic | 20.0% |
| !! | ATAAGAGAATTATTAATCAG+AGG | + | chr5.3:3400220-3400239 | None:intergenic | 20.0% |
| !! | ATGAGACAAGAAATAAAATA+TGG | + | chr5.3:3401635-3401654 | None:intergenic | 20.0% |
| !! | GTCTATATTCAGAAAAATAT+TGG | - | chr5.3:3399389-3399408 | MS.gene072735:intron | 20.0% |
| !! | GTTAATGTCATAATTCATAA+AGG | + | chr5.3:3400075-3400094 | None:intergenic | 20.0% |
| !! | TAATAAATAAGATTATGACC+AGG | - | chr5.3:3400423-3400442 | MS.gene072735:intron | 20.0% |
| !! | TATATAATAGAAACCTGTTT+AGG | - | chr5.3:3399987-3400006 | MS.gene072735:intron | 20.0% |
| !! | TATGTTAACTATAAAGTATG+TGG | - | chr5.3:3399226-3399245 | MS.gene072735:CDS | 20.0% |
| !! | TATTATAAGATTATGCGAAA+AGG | + | chr5.3:3399417-3399436 | None:intergenic | 20.0% |
| !! | TTCATAAAGAATAAACTTGT+AGG | - | chr5.3:3398996-3399015 | MS.gene072735:CDS | 20.0% |
| !!! | AAACAAAAACTATAGTTTTG+AGG | + | chr5.3:3399607-3399626 | None:intergenic | 20.0% |
| !!! | AAAGTATTCAACAATAAACT+TGG | + | chr5.3:3400330-3400349 | None:intergenic | 20.0% |
| !!! | AAATTTTGTAGATAAGTTAG+TGG | - | chr5.3:3398532-3398551 | MS.gene072735:CDS | 20.0% |
| !!! | AACAAAAACTATAGTTTTGA+GGG | + | chr5.3:3399606-3399625 | None:intergenic | 20.0% |
| !!! | ACAATGAAATGTTTTAACTT+GGG | + | chr5.3:3400377-3400396 | None:intergenic | 20.0% |
| !!! | TAATATTATCTTTTTATGGC+AGG | - | chr5.3:3399949-3399968 | MS.gene072735:intron | 20.0% |
| !!! | TACAATGAAATGTTTTAACT+TGG | + | chr5.3:3400378-3400397 | None:intergenic | 20.0% |
| !!! | TCATTGTATAGTTTTTTACT+AGG | - | chr5.3:3400390-3400409 | MS.gene072735:intron | 20.0% |
| ! | AAATAGAATTAGTCATTGCA+TGG | - | chr5.3:3399568-3399587 | MS.gene072735:intron | 25.0% |
| ! | AAATTAAGGACTTAATAGAG+TGG | + | chr5.3:3399539-3399558 | None:intergenic | 25.0% |
| ! | AAATTCATTCATGACTTCTA+TGG | - | chr5.3:3398584-3398603 | MS.gene072735:CDS | 25.0% |
| ! | AATAAGATAACCCTATTGTA+TGG | + | chr5.3:3399359-3399378 | None:intergenic | 25.0% |
| ! | AATATGTACAAAGTGTGTTA+AGG | + | chr5.3:3398942-3398961 | None:intergenic | 25.0% |
| ! | AATCATGCATTTGGATTAAT+AGG | - | chr5.3:3400581-3400600 | MS.gene072735:intron | 25.0% |
| ! | ACATTATATAACAACAACAG+GGG | + | chr5.3:3401050-3401069 | None:intergenic | 25.0% |
| ! | AGAAAAACTCCATGATTTAA+AGG | + | chr5.3:3401254-3401273 | None:intergenic | 25.0% |
| ! | ATTAATAGGTTATCTCCATA+TGG | - | chr5.3:3400595-3400614 | MS.gene072735:intron | 25.0% |
| ! | ATTCAACAATAAACTTGGAA+AGG | + | chr5.3:3400325-3400344 | None:intergenic | 25.0% |
| ! | GAACATTATATAACAACAAC+AGG | + | chr5.3:3401052-3401071 | None:intergenic | 25.0% |
| ! | TATGACATTAACAATTATCG+TGG | - | chr5.3:3400083-3400102 | MS.gene072735:intron | 25.0% |
| ! | TTAATAGGTTATCTCCATAT+GGG | - | chr5.3:3400596-3400615 | MS.gene072735:intron | 25.0% |
| ! | TTGTGTTTGCAAAACTAAAA+TGG | + | chr5.3:3401299-3401318 | None:intergenic | 25.0% |
| ! | TTGTTGAATGCTATTCTTAT+AGG | - | chr5.3:3399202-3399221 | MS.gene072735:CDS | 25.0% |
| !! | AATGAAAATTTTCAAACACC+AGG | + | chr5.3:3401683-3401702 | None:intergenic | 25.0% |
| !! | ACTACATATAACCTTCTTTT+AGG | + | chr5.3:3401384-3401403 | None:intergenic | 25.0% |
| !! | AGAAATTGTATGTTGTTTGT+AGG | - | chr5.3:3401490-3401509 | MS.gene072735:intron | 25.0% |
| !! | ATTAGTGAATCCAAAAGTTT+TGG | + | chr5.3:3400682-3400701 | None:intergenic | 25.0% |
| !! | CATTTTTAAATTCCTTTTCG+TGG | - | chr5.3:3401225-3401244 | MS.gene072735:intron | 25.0% |
| !! | CTACATATAACCTTCTTTTA+GGG | + | chr5.3:3401383-3401402 | None:intergenic | 25.0% |
| !! | GTTGTTGTTATATAATGTTC+AGG | - | chr5.3:3401052-3401071 | MS.gene072735:intron | 25.0% |
| !! | TATTGTGATATCTTTTACCT+CGG | - | chr5.3:3399435-3399454 | MS.gene072735:intron | 25.0% |
| !! | TTAGTGAATCCAAAAGTTTT+GGG | + | chr5.3:3400681-3400700 | None:intergenic | 25.0% |
| !!! | AGGATTTCAGTTTTGAAATT+AGG | - | chr5.3:3399271-3399290 | MS.gene072735:intron | 25.0% |
| !!! | GGATTTCAGTTTTGAAATTA+GGG | - | chr5.3:3399272-3399291 | MS.gene072735:intron | 25.0% |
| !!! | GGTTATCTTATTTTGACATT+TGG | - | chr5.3:3399367-3399386 | MS.gene072735:intron | 25.0% |
| !!! | TGGTTTGTTTTTATAGTATC+CGG | - | chr5.3:3398604-3398623 | MS.gene072735:CDS | 25.0% |
| !!! | TTCTGTCTTTGATTTTGTTA+TGG | - | chr5.3:3401319-3401338 | MS.gene072735:intron | 25.0% |
| AAACACCAGGTCATAAATAA+TGG | + | chr5.3:3401670-3401689 | None:intergenic | 30.0% | |
| AAACTTTCTTACATCTGATC+TGG | + | chr5.3:3399124-3399143 | None:intergenic | 30.0% | |
| AACTTTCTCGTGGATATAAA+AGG | - | chr5.3:3399789-3399808 | MS.gene072735:intron | 30.0% | |
| AAGGAATATACCTAAGTTTG+AGG | - | chr5.3:3399860-3399879 | MS.gene072735:intron | 30.0% | |
| ACTAACAACACAATTAAGCT+TGG | - | chr5.3:3398662-3398681 | MS.gene072735:intron | 30.0% | |
| AGTTTGAACCCAGTATTTAT+TGG | + | chr5.3:3398756-3398775 | None:intergenic | 30.0% | |
| ATAAACTTAGAGACATTGAG+TGG | - | chr5.3:3401794-3401813 | MS.gene072735:intron | 30.0% | |
| ATAGCATTCAACAAGAAAGT+AGG | + | chr5.3:3399196-3399215 | None:intergenic | 30.0% | |
| ATTGACCATTATTTATGACC+TGG | - | chr5.3:3401662-3401681 | MS.gene072735:CDS | 30.0% | |
| CAGCATAATCAAAATATGGA+AGG | + | chr5.3:3399045-3399064 | None:intergenic | 30.0% | |
| GATAATTACCAAATCCCATA+TGG | + | chr5.3:3400613-3400632 | None:intergenic | 30.0% | |
| GCGAAATAATTATCCTAAAC+AGG | + | chr5.3:3400003-3400022 | None:intergenic | 30.0% | |
| GTCAACAATTATTCCAAGAA+CGG | + | chr5.3:3399100-3399119 | None:intergenic | 30.0% | |
| GTCATGACTTAATGTTGAAA+AGG | + | chr5.3:3400036-3400055 | None:intergenic | 30.0% | |
| GTTTGAACCCAGTATTTATT+GGG | + | chr5.3:3398755-3398774 | None:intergenic | 30.0% | |
| TAGCATTCAACAAGAAAGTA+GGG | + | chr5.3:3399195-3399214 | None:intergenic | 30.0% | |
| TCTTATTCCACCATACAATA+GGG | - | chr5.3:3399346-3399365 | MS.gene072735:intron | 30.0% | |
| ! | CTTAATTGTGTTGTTAGTCA+TGG | + | chr5.3:3398660-3398679 | None:intergenic | 30.0% |
| ! | TAAAGTATGTGGTGTCAATT+CGG | - | chr5.3:3399237-3399256 | MS.gene072735:intron | 30.0% |
| ! | TAAATCATGGAGTTTTTCTC+AGG | - | chr5.3:3401255-3401274 | MS.gene072735:CDS | 30.0% |
| ! | TATTAATTTCAGTTTTCCGC+TGG | - | chr5.3:3401704-3401723 | MS.gene072735:CDS | 30.0% |
| ! | TTGAAACTTGAAAGTATGCA+TGG | + | chr5.3:3401456-3401475 | None:intergenic | 30.0% |
| ! | TTTCAGCCATTATTTTCTGT+TGG | + | chr5.3:3401823-3401842 | None:intergenic | 30.0% |
| ! | TTTTTACACACCTCAAACTT+AGG | + | chr5.3:3399873-3399892 | None:intergenic | 30.0% |
| !! | GATTTTTAAAAGCCAGCAAT+TGG | + | chr5.3:3400848-3400867 | None:intergenic | 30.0% |
| !! | TCAAAGCATTGACATGTTAT+TGG | + | chr5.3:3399682-3399701 | None:intergenic | 30.0% |
| !! | TGGAAATTGTTGTTTCATCT+AGG | - | chr5.3:3401724-3401743 | MS.gene072735:CDS | 30.0% |
| !!! | AAAAACTATAGTTTTGAGGG+AGG | + | chr5.3:3399603-3399622 | None:intergenic | 30.0% |
| !!! | AAAACTATAGTTTTGAGGGA+GGG | + | chr5.3:3399602-3399621 | None:intergenic | 30.0% |
| !!! | GGTTTGTTTTTATAGTATCC+GGG | - | chr5.3:3398605-3398624 | MS.gene072735:CDS | 30.0% |
| !!! | TTGCTGGCTTTTAAAAATCA+CGG | - | chr5.3:3400849-3400868 | MS.gene072735:intron | 30.0% |
| AAAACAGATTAGTGAACACC+TGG | - | chr5.3:3400266-3400285 | MS.gene072735:intron | 35.0% | |
| AACAACACAATTAAGCTTGG+AGG | - | chr5.3:3398665-3398684 | MS.gene072735:intron | 35.0% | |
| AAGATAACCCTATTGTATGG+TGG | + | chr5.3:3399356-3399375 | None:intergenic | 35.0% | |
| AAGCAAAAAAGCAAGTTTGG+GGG | + | chr5.3:3400893-3400912 | None:intergenic | 35.0% | |
| ACAATGTACTAATGGGACTT+GGG | + | chr5.3:3399472-3399491 | None:intergenic | 35.0% | |
| AGAAAAACTCTGTACCAAAC+AGG | + | chr5.3:3400775-3400794 | None:intergenic | 35.0% | |
| AGGATAATTATTTCGCTCTG+TGG | - | chr5.3:3400007-3400026 | MS.gene072735:intron | 35.0% | |
| AGGCAAAAGAAACAAAACCA+CGG | + | chr5.3:3401092-3401111 | None:intergenic | 35.0% | |
| ATCAATACTAGTGACGTATG+TGG | - | chr5.3:3400532-3400551 | MS.gene072735:CDS | 35.0% | |
| ATGCTTCATAGTGCTTGTTT+GGG | + | chr5.3:3400927-3400946 | None:intergenic | 35.0% | |
| ATGGTGTTTGTTTAGCTAGT+GGG | - | chr5.3:3401338-3401357 | MS.gene072735:intron | 35.0% | |
| ATGTCCTTTGTTACTGTGAA+AGG | - | chr5.3:3398874-3398893 | MS.gene072735:intron | 35.0% | |
| ATTTAAAGGTAGCCACGAAA+AGG | + | chr5.3:3401240-3401259 | None:intergenic | 35.0% | |
| CAAGCAAAAAAGCAAGTTTG+GGG | + | chr5.3:3400894-3400913 | None:intergenic | 35.0% | |
| CTCTAAGCCCAATAAATACT+GGG | - | chr5.3:3398745-3398764 | MS.gene072735:intron | 35.0% | |
| GATGAAACAACAATTTCCAG+CGG | + | chr5.3:3401723-3401742 | None:intergenic | 35.0% | |
| GCAAGCAAAAAAGCAAGTTT+GGG | + | chr5.3:3400895-3400914 | None:intergenic | 35.0% | |
| GCCAGACTTCATTATAGAAA+TGG | + | chr5.3:3398714-3398733 | None:intergenic | 35.0% | |
| GCCATTTCTATAATGAAGTC+TGG | - | chr5.3:3398710-3398729 | MS.gene072735:intron | 35.0% | |
| GGTTATATGTAGTGTTCAAC+TGG | - | chr5.3:3401391-3401410 | MS.gene072735:intron | 35.0% | |
| GGTTCAAACTTCTCAAAAGA+GGG | - | chr5.3:3398766-3398785 | MS.gene072735:intron | 35.0% | |
| GTCCAGTACTTGATACTTTA+GGG | - | chr5.3:3401532-3401551 | MS.gene072735:intron | 35.0% | |
| TAATTCTTTACGATGCAGGT+AGG | - | chr5.3:3401111-3401130 | MS.gene072735:intron | 35.0% | |
| TACCTGCATCGTAAAGAATT+AGG | + | chr5.3:3401112-3401131 | None:intergenic | 35.0% | |
| TAGGTGCTTTGCTTTATGTT+CGG | - | chr5.3:3401130-3401149 | MS.gene072735:intron | 35.0% | |
| TATGGTGTTTGTTTAGCTAG+TGG | - | chr5.3:3401337-3401356 | MS.gene072735:intron | 35.0% | |
| TCTCTAAGCCCAATAAATAC+TGG | - | chr5.3:3398744-3398763 | MS.gene072735:intron | 35.0% | |
| TGCAAGCAAAAAAGCAAGTT+TGG | + | chr5.3:3400896-3400915 | None:intergenic | 35.0% | |
| TGGTGTCCAACAGAAAATAA+TGG | - | chr5.3:3401814-3401833 | MS.gene072735:intron | 35.0% | |
| TGTATCTTAGAACTCTCTAG+TGG | - | chr5.3:3399900-3399919 | MS.gene072735:intron | 35.0% | |
| TGTCCAGTACTTGATACTTT+AGG | - | chr5.3:3401531-3401550 | MS.gene072735:intron | 35.0% | |
| TTTCTATAATGAAGTCTGGC+AGG | - | chr5.3:3398714-3398733 | MS.gene072735:intron | 35.0% | |
| ! | AAATCACGGCAAATTTGCTT+TGG | - | chr5.3:3400863-3400882 | MS.gene072735:intron | 35.0% |
| ! | GTCTTATTCCACCATACAAT+AGG | - | chr5.3:3399345-3399364 | MS.gene072735:intron | 35.0% |
| ! | TCAATTCGGCAAGTAGTTTT+AGG | - | chr5.3:3399251-3399270 | MS.gene072735:intron | 35.0% |
| ! | TGTATTCCACCCAAAACTTT+TGG | - | chr5.3:3400669-3400688 | MS.gene072735:intron | 35.0% |
| ! | TTCCCTAAAGTATCAAGTAC+TGG | + | chr5.3:3401537-3401556 | None:intergenic | 35.0% |
| !! | CCAAGAAGTACTAACAAATG+GGG | + | chr5.3:3400354-3400373 | None:intergenic | 35.0% |
| !! | CTCTAGGACAATGTACTAAT+GGG | + | chr5.3:3399479-3399498 | None:intergenic | 35.0% |
| !! | GCCAAGAAGTACTAACAAAT+GGG | + | chr5.3:3400355-3400374 | None:intergenic | 35.0% |
| !!! | TGGAGCTTTTGAGTTAAAGT+GGG | + | chr5.3:3400828-3400847 | None:intergenic | 35.0% |
| !!! | TTGGAGCTTTTGAGTTAAAG+TGG | + | chr5.3:3400829-3400848 | None:intergenic | 35.0% |
| AACAATTATCGTGGCTGTTG+AGG | - | chr5.3:3400092-3400111 | MS.gene072735:intron | 40.0% | |
| AACACAATTAAGCTTGGAGG+TGG | - | chr5.3:3398668-3398687 | MS.gene072735:intron | 40.0% | |
| AACTCAAAAGCTCCAATTGC+TGG | - | chr5.3:3400833-3400852 | MS.gene072735:intron | 40.0% | |
| AATAATGGCTGAAAACCTGC+TGG | - | chr5.3:3401829-3401848 | MS.gene072735:CDS | 40.0% | |
| ACAAAACCACGGTGGTAAAA+AGG | + | chr5.3:3401081-3401100 | None:intergenic | 40.0% | |
| ACAAGCTCGTGACTGTAATT+CGG | - | chr5.3:3399640-3399659 | MS.gene072735:intron | 40.0% | |
| ACAATTATCGTGGCTGTTGA+GGG | - | chr5.3:3400093-3400112 | MS.gene072735:intron | 40.0% | |
| ACCAAACAGGCTAATAGTCT+TGG | + | chr5.3:3400762-3400781 | None:intergenic | 40.0% | |
| AGGTCAATAACTACATCTCC+CGG | + | chr5.3:3398626-3398645 | None:intergenic | 40.0% | |
| AGGTGCTTTGCTTTATGTTC+GGG | - | chr5.3:3401131-3401150 | MS.gene072735:intron | 40.0% | |
| AGTACATTCAGAATGCTCAC+AGG | - | chr5.3:3400498-3400517 | MS.gene072735:intron | 40.0% | |
| ATAGCTCAGGATTCATTCCA+GGG | + | chr5.3:3401170-3401189 | None:intergenic | 40.0% | |
| CAAAAGAAACAAAACCACGG+TGG | + | chr5.3:3401089-3401108 | None:intergenic | 40.0% | |
| CACACCTTTCACAGTAACAA+AGG | + | chr5.3:3398881-3398900 | None:intergenic | 40.0% | |
| CATGCTTCATAGTGCTTGTT+TGG | + | chr5.3:3400928-3400947 | None:intergenic | 40.0% | |
| CATTCAACAAGAAAGTAGGG+CGG | + | chr5.3:3399192-3399211 | None:intergenic | 40.0% | |
| CATTTGAAGGAGGAACAAGA+AGG | - | chr5.3:3399841-3399860 | MS.gene072735:intron | 40.0% | |
| CCAGTTCTATCATAGACAAG+AGG | + | chr5.3:3400178-3400197 | None:intergenic | 40.0% | |
| CCATTAGTACATTGTCCTAG+AGG | - | chr5.3:3399477-3399496 | MS.gene072735:intron | 40.0% | |
| CCTCTTGTCTATGATAGAAC+TGG | - | chr5.3:3400175-3400194 | MS.gene072735:intron | 40.0% | |
| CTACCAGTTCTTCCATTTGA+AGG | - | chr5.3:3399828-3399847 | MS.gene072735:intron | 40.0% | |
| CTTCTTGTTCCTCCTTCAAA+TGG | + | chr5.3:3399843-3399862 | None:intergenic | 40.0% | |
| CTTGGTCTGAATCATGCATT+TGG | - | chr5.3:3400572-3400591 | MS.gene072735:CDS | 40.0% | |
| GACAATGTACTAATGGGACT+TGG | + | chr5.3:3399473-3399492 | None:intergenic | 40.0% | |
| GAGCAGGTTCAAGTATTTCT+TGG | - | chr5.3:3400554-3400573 | MS.gene072735:CDS | 40.0% | |
| GATAGTTGTAGATGGAGATG+AGG | + | chr5.3:3401756-3401775 | None:intergenic | 40.0% | |
| GATTATGACCAGGATGATTG+AGG | - | chr5.3:3400433-3400452 | MS.gene072735:intron | 40.0% | |
| GCTACGATGATAGTTGTAGA+TGG | + | chr5.3:3401764-3401783 | None:intergenic | 40.0% | |
| GGATATAAAAGGACCTGCAT+TGG | - | chr5.3:3399800-3399819 | MS.gene072735:intron | 40.0% | |
| GGGTTCAAACTTCTCAAAAG+AGG | - | chr5.3:3398765-3398784 | MS.gene072735:intron | 40.0% | |
| GGTTATCTCCATATGGGATT+TGG | - | chr5.3:3400602-3400621 | MS.gene072735:intron | 40.0% | |
| GTAGATAAGTTAGTGGTGAG+TGG | - | chr5.3:3398539-3398558 | MS.gene072735:CDS | 40.0% | |
| TAGTCATGGACATGGTAGAT+AGG | + | chr5.3:3398646-3398665 | None:intergenic | 40.0% | |
| TCGTGGCTACCTTTAAATCA+TGG | - | chr5.3:3401242-3401261 | MS.gene072735:intron | 40.0% | |
| TGCCTAATTCTTTACGATGC+AGG | - | chr5.3:3401107-3401126 | MS.gene072735:intron | 40.0% | |
| TGGCTTAAATGGACGTGTTT+GGG | - | chr5.3:3401581-3401600 | MS.gene072735:intron | 40.0% | |
| TTCATAGTGCTTGTTTGGGA+TGG | + | chr5.3:3400923-3400942 | None:intergenic | 40.0% | |
| TTGGCTTAAATGGACGTGTT+TGG | - | chr5.3:3401580-3401599 | MS.gene072735:intron | 40.0% | |
| TTTCCCTCTGTTGTTCTATC+CGG | - | chr5.3:3401000-3401019 | MS.gene072735:intron | 40.0% | |
| ! | ACCAAGACTATTAGCCTGTT+TGG | - | chr5.3:3400758-3400777 | MS.gene072735:intron | 40.0% |
| ! | CCACGTTTTCTGTAAAAGCA+CGG | - | chr5.3:3400797-3400816 | MS.gene072735:intron | 40.0% |
| ! | CCCCATTTGTTAGTACTTCT+TGG | - | chr5.3:3400351-3400370 | MS.gene072735:intron | 40.0% |
| ! | CGTGCTTTTACAGAAAACGT+GGG | + | chr5.3:3400799-3400818 | None:intergenic | 40.0% |
| ! | GAGATTGCAGTTGGCTTAAA+TGG | - | chr5.3:3401570-3401589 | MS.gene072735:intron | 40.0% |
| ! | TGTGTTGTTAGTCATGGACA+TGG | + | chr5.3:3398654-3398673 | None:intergenic | 40.0% |
| !! | AGTATCAAGTACTGGACATG+TGG | + | chr5.3:3401529-3401548 | None:intergenic | 40.0% |
| !! | CCTCTAGGACAATGTACTAA+TGG | + | chr5.3:3399480-3399499 | None:intergenic | 40.0% |
| !! | GGCCAAGAAGTACTAACAAA+TGG | + | chr5.3:3400356-3400375 | None:intergenic | 40.0% |
| !! | GTATCAAGTACTGGACATGT+GGG | + | chr5.3:3401528-3401547 | None:intergenic | 40.0% |
| !!! | GTGAATCCAAAAGTTTTGGG+TGG | + | chr5.3:3400678-3400697 | None:intergenic | 40.0% |
| AACAACAACAGGGGAATGAC+TGG | + | chr5.3:3401041-3401060 | None:intergenic | 45.0% | |
| ACTGGTAGAAATGCCAATGC+AGG | + | chr5.3:3399816-3399835 | None:intergenic | 45.0% | |
| AGAGGCAAGATTTCTCAAGC+AGG | + | chr5.3:3400160-3400179 | None:intergenic | 45.0% | |
| ATCTGTGCAGAACTTTCTCG+TGG | - | chr5.3:3399779-3399798 | MS.gene072735:intron | 45.0% | |
| CCAGTTCTTCCATTTGAAGG+AGG | - | chr5.3:3399831-3399850 | MS.gene072735:intron | 45.0% | |
| CCTCCTTCAAATGGAAGAAC+TGG | + | chr5.3:3399834-3399853 | None:intergenic | 45.0% | |
| CTGGTCAAGTGTTAGTTAGC+CGG | + | chr5.3:3401022-3401041 | None:intergenic | 45.0% | |
| GATAGCTCAGGATTCATTCC+AGG | + | chr5.3:3401171-3401190 | None:intergenic | 45.0% | |
| TAATGAAGTCTGGCAGGCTT+AGG | - | chr5.3:3398720-3398739 | MS.gene072735:intron | 45.0% | |
| TAGCCGGATAGAACAACAGA+GGG | + | chr5.3:3401006-3401025 | None:intergenic | 45.0% | |
| TATGGCACGCTGAAACTACA+AGG | + | chr5.3:3401617-3401636 | None:intergenic | 45.0% | |
| TGTTTAGCTAGTGGGAAAGC+TGG | - | chr5.3:3401346-3401365 | MS.gene072735:intron | 45.0% | |
| TTAGCCGGATAGAACAACAG+AGG | + | chr5.3:3401007-3401026 | None:intergenic | 45.0% | |
| ! | AGCTATCATGCACTGATGGT+TGG | - | chr5.3:3401184-3401203 | MS.gene072735:intron | 45.0% |
| ! | AGGTTTCCTTTTTACCACCG+TGG | - | chr5.3:3401072-3401091 | MS.gene072735:intron | 45.0% |
| ! | CCGTGCTTTTACAGAAAACG+TGG | + | chr5.3:3400800-3400819 | None:intergenic | 45.0% |
| ! | TAAGCCTAGAGTACTCCTCT+AGG | + | chr5.3:3399495-3399514 | None:intergenic | 45.0% |
| !! | GAGTTTGGTGCCCTAAAAGA+AGG | - | chr5.3:3401370-3401389 | MS.gene072735:intron | 45.0% |
| !! | TTGTCCTAGAGGAGTACTCT+AGG | - | chr5.3:3399488-3399507 | MS.gene072735:intron | 45.0% |
| !! | ATAAATACAAAAAATAAAAA+TGG | + | chr5.3:3399312-3399331 | None:intergenic | 5.0% |
| !!! | TATATAATATTATCTTTTTA+TGG | - | chr5.3:3399945-3399964 | MS.gene072735:intron | 5.0% |
| AACCTGCAACGTGCGTTCTT+AGG | + | chr5.3:3400644-3400663 | None:intergenic | 50.0% | |
| ACAGTATGTGCCACATGCAG+AGG | - | chr5.3:3399071-3399090 | MS.gene072735:intron | 50.0% | |
| ACTAGTGACGTATGTGGAGC+AGG | - | chr5.3:3400538-3400557 | MS.gene072735:CDS | 50.0% | |
| AGAACGGAATCCTCTGCATG+TGG | + | chr5.3:3399084-3399103 | None:intergenic | 50.0% | |
| AGTGGGAAAGCTGGAGAGTT+TGG | - | chr5.3:3401355-3401374 | MS.gene072735:intron | 50.0% | |
| CATGCAGAGGATTCCGTTCT+TGG | - | chr5.3:3399084-3399103 | MS.gene072735:intron | 50.0% | |
| CCATCAGTGCATGATAGCTC+AGG | + | chr5.3:3401183-3401202 | None:intergenic | 50.0% | |
| CCTGAGCTATCATGCACTGA+TGG | - | chr5.3:3401180-3401199 | MS.gene072735:intron | 50.0% | |
| CTCGTGACTGTAATTCGGAG+TGG | - | chr5.3:3399645-3399664 | MS.gene072735:intron | 50.0% | |
| CTCTCGTTCGAGATTGCAGT+TGG | - | chr5.3:3401561-3401580 | MS.gene072735:intron | 50.0% | |
| CTTGGGTTTCAGAAAGTCCG+AGG | + | chr5.3:3399455-3399474 | None:intergenic | 50.0% | |
| GACCAGGATGATTGAGGTTG+AGG | - | chr5.3:3400439-3400458 | MS.gene072735:intron | 50.0% | |
| GTAGGGCGGAACTAAAAGAC+TGG | + | chr5.3:3399178-3399197 | None:intergenic | 50.0% | |
| TGCCTCAACCTCAATCATCC+TGG | + | chr5.3:3400444-3400463 | None:intergenic | 50.0% | |
| TTCCTAAGAACGCACGTTGC+AGG | - | chr5.3:3400639-3400658 | MS.gene072735:intron | 50.0% | |
| CGGGTCGTTAAAGCAAACCC+TGG | - | chr5.3:3401150-3401169 | MS.gene072735:intron | 55.0% | |
| GGCTGAAAACCTGCTGGAGA+GGG | - | chr5.3:3401835-3401854 | MS.gene072735:CDS | 55.0% | |
| TGGCTGAAAACCTGCTGGAG+AGG | - | chr5.3:3401834-3401853 | MS.gene072735:CDS | 55.0% | |
| GCTTGGAGGTGGTCTACGTC+AGG | - | chr5.3:3398679-3398698 | MS.gene072735:intron | 60.0% | |
| GGCTGTTGAGGGATGTGCGA+AGG | - | chr5.3:3400104-3400123 | MS.gene072735:intron | 60.0% | |
| GGTGTGTGTGTGTGTGTGCG+CGG | - | chr5.3:3398895-3398914 | MS.gene072735:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.3 | gene | 3398515 | 3401865 | 3398515 | ID=MS.gene072735 |
| chr5.3 | mRNA | 3398515 | 3401865 | 3398515 | ID=MS.gene072735.t1;Parent=MS.gene072735 |
| chr5.3 | exon | 3401827 | 3401865 | 3401827 | ID=MS.gene072735.t1.exon1;Parent=MS.gene072735.t1 |
| chr5.3 | CDS | 3401827 | 3401865 | 3401827 | ID=cds.MS.gene072735.t1;Parent=MS.gene072735.t1 |
| chr5.3 | exon | 3401593 | 3401760 | 3401593 | ID=MS.gene072735.t1.exon2;Parent=MS.gene072735.t1 |
| chr5.3 | CDS | 3401593 | 3401760 | 3401593 | ID=cds.MS.gene072735.t1;Parent=MS.gene072735.t1 |
| chr5.3 | exon | 3401249 | 3401305 | 3401249 | ID=MS.gene072735.t1.exon3;Parent=MS.gene072735.t1 |
| chr5.3 | CDS | 3401249 | 3401305 | 3401249 | ID=cds.MS.gene072735.t1;Parent=MS.gene072735.t1 |
| chr5.3 | exon | 3400499 | 3400591 | 3400499 | ID=MS.gene072735.t1.exon4;Parent=MS.gene072735.t1 |
| chr5.3 | CDS | 3400499 | 3400591 | 3400499 | ID=cds.MS.gene072735.t1;Parent=MS.gene072735.t1 |
| chr5.3 | exon | 3399179 | 3399251 | 3399179 | ID=MS.gene072735.t1.exon5;Parent=MS.gene072735.t1 |
| chr5.3 | CDS | 3399179 | 3399251 | 3399179 | ID=cds.MS.gene072735.t1;Parent=MS.gene072735.t1 |
| chr5.3 | exon | 3398982 | 3399027 | 3398982 | ID=MS.gene072735.t1.exon6;Parent=MS.gene072735.t1 |
| chr5.3 | CDS | 3398982 | 3399027 | 3398982 | ID=cds.MS.gene072735.t1;Parent=MS.gene072735.t1 |
| chr5.3 | exon | 3398778 | 3398868 | 3398778 | ID=MS.gene072735.t1.exon7;Parent=MS.gene072735.t1 |
| chr5.3 | CDS | 3398778 | 3398868 | 3398778 | ID=cds.MS.gene072735.t1;Parent=MS.gene072735.t1 |
| chr5.3 | exon | 3398515 | 3398634 | 3398515 | ID=MS.gene072735.t1.exon8;Parent=MS.gene072735.t1 |
| chr5.3 | CDS | 3398515 | 3398634 | 3398515 | ID=cds.MS.gene072735.t1;Parent=MS.gene072735.t1 |
| Gene Sequence |
| Protein sequence |
