Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene024674.t1 | PNY12750.1 | 91.9 | 235 | 17 | 1 | 4 | 238 | 8 | 240 | 1.80E-116 | 428.7 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene024674.t1 | Q7KWX9 | 43.3 | 217 | 116 | 3 | 10 | 225 | 6 | 216 | 1.3e-43 | 177.9 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene024674.t1 | A0A2K3PBT7 | 91.9 | 235 | 17 | 1 | 4 | 238 | 8 | 240 | 1.3e-116 | 428.7 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene024674 | MS.gene058147 | PPI |
| MS.gene024674 | MS.gene024734 | PPI |
| MS.gene024674 | MS.gene021698 | PPI |
| MS.gene52227 | MS.gene024674 | PPI |
| MS.gene043239 | MS.gene024674 | PPI |
| MS.gene21912 | MS.gene024674 | PPI |
| MS.gene27712 | MS.gene024674 | PPI |
| MS.gene79599 | MS.gene024674 | PPI |
| MS.gene024674 | MS.gene31317 | PPI |
| MS.gene050621 | MS.gene024674 | PPI |
| MS.gene024674 | MS.gene043576 | PPI |
| MS.gene85900 | MS.gene024674 | PPI |
| MS.gene024674 | MS.gene22316 | PPI |
| MS.gene024674 | MS.gene041852 | PPI |
| MS.gene025936 | MS.gene024674 | PPI |
| MS.gene072735 | MS.gene024674 | PPI |
| MS.gene55323 | MS.gene024674 | PPI |
| MS.gene22822 | MS.gene024674 | PPI |
| MS.gene024674 | MS.gene21710 | PPI |
| MS.gene023858 | MS.gene024674 | PPI |
| MS.gene42834 | MS.gene024674 | PPI |
| MS.gene024674 | MS.gene53118 | PPI |
| MS.gene024674 | MS.gene78555 | PPI |
| MS.gene024471 | MS.gene024674 | PPI |
| MS.gene91519 | MS.gene024674 | PPI |
| MS.gene21656 | MS.gene024674 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene024674.t1 | MTR_5g043110 | 93.103 | 232 | 14 | 1 | 7 | 238 | 11 | 240 | 6.05e-160 | 442 |
| MS.gene024674.t1 | MTR_5g009430 | 92.562 | 121 | 9 | 0 | 118 | 238 | 22 | 142 | 1.20e-77 | 231 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene024674.t1 | AT4G32175 | 69.658 | 234 | 69 | 1 | 1 | 234 | 5 | 236 | 5.47e-121 | 344 |
| MS.gene024674.t1 | AT2G25355 | 69.697 | 231 | 68 | 1 | 7 | 237 | 11 | 239 | 5.76e-120 | 342 |
| MS.gene024674.t1 | AT2G25355 | 71.564 | 211 | 60 | 0 | 27 | 237 | 1 | 211 | 1.31e-113 | 324 |
Find 62 sgRNAs with CRISPR-Local
Find 219 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ACTAACTTATCTACAAAATT+TGG | 0.140723 | 5.1:+3089896 | None:intergenic |
| CATGCAGAGGATTCCGTTCT+TGG | 0.244957 | 5.1:-3089255 | MS.gene024674:CDS |
| TGTCCAGTACTTGATACTTT+AGG | 0.252105 | 5.1:-3086806 | MS.gene024674:CDS |
| GAGATTGCAGTTGGCTTAAA+TGG | 0.270972 | 5.1:-3086767 | MS.gene024674:CDS |
| GTCCAGTACTTGATACTTTA+GGG | 0.280337 | 5.1:-3086805 | MS.gene024674:CDS |
| AGTTTGAACCCAGTATTTAT+TGG | 0.291561 | 5.1:+3089673 | None:intergenic |
| TCTCTAAGCCCAATAAATAC+TGG | 0.308371 | 5.1:-3089682 | MS.gene024674:CDS |
| GTTTGAACCCAGTATTTATT+GGG | 0.332544 | 5.1:+3089674 | None:intergenic |
| AACTTTCTCGTGGATATAAA+AGG | 0.344541 | 5.1:-3088550 | MS.gene024674:CDS |
| TGGCTTAAATGGACGTGTTT+GGG | 0.360369 | 5.1:-3086756 | MS.gene024674:intron |
| TTGGCTTAAATGGACGTGTT+TGG | 0.361897 | 5.1:-3086757 | MS.gene024674:CDS |
| TAGGTGCTTTGCTTTATGTT+CGG | 0.366163 | 5.1:-3087210 | MS.gene024674:CDS |
| AGTGGGAAAGCTGGAGAGTT+TGG | 0.368035 | 5.1:-3086985 | MS.gene024674:CDS |
| CTTCTTGTTCCTCCTTCAAA+TGG | 0.385777 | 5.1:+3088499 | None:intergenic |
| AGGTGCTTTGCTTTATGTTC+GGG | 0.387671 | 5.1:-3087209 | MS.gene024674:CDS |
| CTACCAGTTCTTCCATTTGA+AGG | 0.393463 | 5.1:-3088511 | MS.gene024674:CDS |
| AAACTTTCTTACATCTGATC+TGG | 0.396631 | 5.1:+3089218 | None:intergenic |
| TATATGTTTGAGTGTTCAAC+TGG | 0.403633 | 5.1:-3086946 | MS.gene024674:CDS |
| CCTCCTTCAAATGGAAGAAC+TGG | 0.406594 | 5.1:+3088508 | None:intergenic |
| GATAGCTCAGGATTCATTCC+AGG | 0.436276 | 5.1:+3087172 | None:intergenic |
| CTTAATTGTGTTGTTAGTCA+TGG | 0.438397 | 5.1:+3089769 | None:intergenic |
| TAATGAAGTCTGGCAGGCTT+AGG | 0.446128 | 5.1:-3089706 | MS.gene024674:CDS |
| GCCAGACTTCATTACAGAAA+TGG | 0.452196 | 5.1:+3089715 | None:intergenic |
| TTCCCTAAAGTATCAAGTAC+TGG | 0.458774 | 5.1:+3086803 | None:intergenic |
| CTCTCGTTCGAGATTGCAGT+TGG | 0.472739 | 5.1:-3086776 | MS.gene024674:CDS |
| GCTACGATGATAGTTGTAGA+TGG | 0.480268 | 5.1:+3086576 | None:intergenic |
| GAGTTTGGTGCCCTAAAAGA+AGG | 0.483816 | 5.1:-3086970 | MS.gene024674:CDS |
| AAGGAATATACCTAAGTTTG+AGG | 0.485197 | 5.1:-3088479 | MS.gene024674:intron |
| CTCTAAGCCCAATAAATACT+GGG | 0.487763 | 5.1:-3089681 | MS.gene024674:CDS |
| GCCATTTCTGTAATGAAGTC+TGG | 0.493308 | 5.1:-3089716 | MS.gene024674:CDS |
| TGTTTAGCTAGTGGGAAAGC+TGG | 0.494729 | 5.1:-3086994 | MS.gene024674:intron |
| GGCTGAAAAGCTGCTGGAGA+GGG | 0.505138 | 5.1:-3086502 | MS.gene024674:CDS |
| TAGTCATGGACATGGTAGAT+AGG | 0.509052 | 5.1:+3089783 | None:intergenic |
| ACTAACAACACAATTAAGCT+TGG | 0.517446 | 5.1:-3089764 | MS.gene024674:CDS |
| TGGTGTCCAACAGAAAATAA+TGG | 0.517813 | 5.1:-3086523 | MS.gene024674:CDS |
| GCTTGGAGGTGGTCTACGTC+AGG | 0.522629 | 5.1:-3089747 | MS.gene024674:CDS |
| CCATCAGTGCATGATAGCTC+AGG | 0.528459 | 5.1:+3087160 | None:intergenic |
| TTTCTGTAATGAAGTCTGGC+AGG | 0.532327 | 5.1:-3089712 | MS.gene024674:CDS |
| AACAACACAATTAAGCTTGG+AGG | 0.534360 | 5.1:-3089761 | MS.gene024674:CDS |
| ATGGTGTTTGTTTAGCTAGT+GGG | 0.536414 | 5.1:-3087002 | MS.gene024674:intron |
| AATAATGGCTGAAAAGCTGC+TGG | 0.537254 | 5.1:-3086508 | MS.gene024674:CDS |
| GGGTTCAAACTTCTCAAAAG+AGG | 0.538553 | 5.1:-3089661 | MS.gene024674:CDS |
| GGATATAAAAGGACCTGCAT+TGG | 0.548121 | 5.1:-3088539 | MS.gene024674:CDS |
| AGGTCAATAACTACATCTCC+CGG | 0.553146 | 5.1:+3089803 | None:intergenic |
| ACTGGTAGAAATGCCAATGC+AGG | 0.555975 | 5.1:+3088526 | None:intergenic |
| GTCAACAATTATTCCAAGAA+CGG | 0.559589 | 5.1:+3089242 | None:intergenic |
| ATAGCTCAGGATTCATTCCA+GGG | 0.563878 | 5.1:+3087173 | None:intergenic |
| AGTATCAAGTACTGGACATG+TGG | 0.565192 | 5.1:+3086811 | None:intergenic |
| CCTGAGCTATCATGCACTGA+TGG | 0.579665 | 5.1:-3087160 | MS.gene024674:intron |
| CCAGTTCTTCCATTTGAAGG+AGG | 0.584150 | 5.1:-3088508 | MS.gene024674:CDS |
| ATCTGTGCAGAACTTTCTCG+TGG | 0.584398 | 5.1:-3088560 | MS.gene024674:intron |
| TGGCTGAAAAGCTGCTGGAG+AGG | 0.586365 | 5.1:-3086503 | MS.gene024674:CDS |
| GGTTCAAACTTCTCAAAAGA+GGG | 0.587352 | 5.1:-3089660 | MS.gene024674:intron |
| AACACAATTAAGCTTGGAGG+TGG | 0.592912 | 5.1:-3089758 | MS.gene024674:CDS |
| GATAGTTGTAGATGGAGATG+AGG | 0.610158 | 5.1:+3086584 | None:intergenic |
| ACAGTATGTGCCACATGCAG+AGG | 0.619860 | 5.1:-3089268 | MS.gene024674:intron |
| CGGGTCGTTAAAGCAAACCC+TGG | 0.632105 | 5.1:-3087190 | MS.gene024674:CDS |
| CATTTGAAGGAGGAACAAGA+AGG | 0.632473 | 5.1:-3088498 | MS.gene024674:CDS |
| GTATCAAGTACTGGACATGT+GGG | 0.660523 | 5.1:+3086812 | None:intergenic |
| AGAACGGAATCCTCTGCATG+TGG | 0.673300 | 5.1:+3089258 | None:intergenic |
| ATAAACTCAGAGACATTGAG+TGG | 0.701505 | 5.1:-3086543 | MS.gene024674:CDS |
| TGTGTTGTTAGTCATGGACA+TGG | 0.714048 | 5.1:+3089775 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAAATAAAAAAAATTGCC+AGG | + | chr5.1:3088353-3088372 | None:intergenic | 15.0% |
| !!! | TATTTTCTTAGTCAAAATTA+AGG | + | chr5.1:3087619-3087638 | None:intergenic | 15.0% |
| !!! | TTTTTGTATTTATTCTATGT+TGG | - | chr5.1:3087385-3087404 | MS.gene024674:intron | 15.0% |
| !! | AAAACAGCATAATCAAAATA+TGG | + | chr5.1:3087115-3087134 | None:intergenic | 20.0% |
| !! | AACATTATATAACAACAACA+GGG | + | chr5.1:3089116-3089135 | None:intergenic | 20.0% |
| !! | AAGTTTATTCTTTATGAAAC+AGG | + | chr5.1:3087060-3087079 | None:intergenic | 20.0% |
| !! | ACTAACTTATCTACAAAATT+TGG | + | chr5.1:3086512-3086531 | None:intergenic | 20.0% |
| !! | ATAAGAGAATTATTAATCAG+AGG | + | chr5.1:3088286-3088305 | None:intergenic | 20.0% |
| !! | ATGAGACAAGAAATAAAATA+TGG | + | chr5.1:3089703-3089722 | None:intergenic | 20.0% |
| !! | GTCTATATTCAGAAAAATAT+TGG | - | chr5.1:3087455-3087474 | MS.gene024674:intron | 20.0% |
| !! | GTTAATGTCATAATTCATAA+AGG | + | chr5.1:3088141-3088160 | None:intergenic | 20.0% |
| !! | TAATAAATAAGATTATGACC+AGG | - | chr5.1:3088489-3088508 | MS.gene024674:CDS | 20.0% |
| !! | TATATAATAGAAACCTGTTT+AGG | - | chr5.1:3088053-3088072 | MS.gene024674:intron | 20.0% |
| !! | TATGTTAACTATAAAGTATG+TGG | - | chr5.1:3087292-3087311 | MS.gene024674:intron | 20.0% |
| !! | TATTATAAGATTATGCGAAA+AGG | + | chr5.1:3087483-3087502 | None:intergenic | 20.0% |
| !! | TTCATAAAGAATAAACTTGT+AGG | - | chr5.1:3087062-3087081 | MS.gene024674:intron | 20.0% |
| !!! | AAACAAAAACTATAGTTTTG+AGG | + | chr5.1:3087673-3087692 | None:intergenic | 20.0% |
| !!! | AAACATATAACCTTCTTTTA+GGG | + | chr5.1:3089448-3089467 | None:intergenic | 20.0% |
| !!! | AAAGTATTCAACAATAAACT+TGG | + | chr5.1:3088396-3088415 | None:intergenic | 20.0% |
| !!! | AAATTTTGTAGATAAGTTAG+TGG | - | chr5.1:3086511-3086530 | MS.gene024674:CDS | 20.0% |
| !!! | AACAAAAACTATAGTTTTGA+GGG | + | chr5.1:3087672-3087691 | None:intergenic | 20.0% |
| !!! | ACAATGAAATGTTTTAACTT+GGG | + | chr5.1:3088443-3088462 | None:intergenic | 20.0% |
| !!! | TAATATTATCTTTTTATGGC+AGG | - | chr5.1:3088015-3088034 | MS.gene024674:intron | 20.0% |
| !!! | TACAATGAAATGTTTTAACT+TGG | + | chr5.1:3088444-3088463 | None:intergenic | 20.0% |
| !!! | TCATTGTATAGTTTTTTACT+AGG | - | chr5.1:3088456-3088475 | MS.gene024674:intron | 20.0% |
| ! | AAATAGAATTAGTCATTGCA+TGG | - | chr5.1:3087634-3087653 | MS.gene024674:intron | 25.0% |
| ! | AAATTAAGGACTTAATAGAG+TGG | + | chr5.1:3087605-3087624 | None:intergenic | 25.0% |
| ! | AAATTCATTCATGACTTCTA+TGG | - | chr5.1:3086563-3086582 | MS.gene024674:CDS | 25.0% |
| ! | AATAAGATAACCCTATTGTA+TGG | + | chr5.1:3087425-3087444 | None:intergenic | 25.0% |
| ! | AATATGTACAAAGTGTGTTA+AGG | + | chr5.1:3086923-3086942 | None:intergenic | 25.0% |
| ! | AATCATGCATTTGGATTAAT+AGG | - | chr5.1:3088647-3088666 | MS.gene024674:intron | 25.0% |
| ! | ACATTATATAACAACAACAG+GGG | + | chr5.1:3089115-3089134 | None:intergenic | 25.0% |
| ! | AGAAAAACTCCATGATTTAA+AGG | + | chr5.1:3089319-3089338 | None:intergenic | 25.0% |
| ! | ATTAATAGGTTATCTCCATA+TGG | - | chr5.1:3088661-3088680 | MS.gene024674:intron | 25.0% |
| ! | ATTCAACAATAAACTTGGAA+AGG | + | chr5.1:3088391-3088410 | None:intergenic | 25.0% |
| ! | GAACATTATATAACAACAAC+AGG | + | chr5.1:3089117-3089136 | None:intergenic | 25.0% |
| ! | TATGACATTAACAATTATCG+TGG | - | chr5.1:3088149-3088168 | MS.gene024674:intron | 25.0% |
| ! | TTAATAGGTTATCTCCATAT+GGG | - | chr5.1:3088662-3088681 | MS.gene024674:intron | 25.0% |
| ! | TTGTGTTTGCAAAACTAAAA+TGG | + | chr5.1:3089364-3089383 | None:intergenic | 25.0% |
| ! | TTGTTGAATGCAATTCTTAT+AGG | - | chr5.1:3087268-3087287 | MS.gene024674:intron | 25.0% |
| !! | AATGAAAATTTTCAAACACC+AGG | + | chr5.1:3089751-3089770 | None:intergenic | 25.0% |
| !! | ATTAGTGAATCCAAAAGTTT+TGG | + | chr5.1:3088748-3088767 | None:intergenic | 25.0% |
| !! | CAAACATATAACCTTCTTTT+AGG | + | chr5.1:3089449-3089468 | None:intergenic | 25.0% |
| !! | CATTTTTAAATTCCTTTTCG+TGG | - | chr5.1:3089290-3089309 | MS.gene024674:intron | 25.0% |
| !! | GTTGTTGTTATATAATGTTC+AGG | - | chr5.1:3089117-3089136 | MS.gene024674:intron | 25.0% |
| !! | TTAGTGAATCCAAAAGTTTT+GGG | + | chr5.1:3088747-3088766 | None:intergenic | 25.0% |
| !!! | AGGATTTCAGTTTTGAAATT+AGG | - | chr5.1:3087337-3087356 | MS.gene024674:intron | 25.0% |
| !!! | GGATTTCAGTTTTGAAATTA+GGG | - | chr5.1:3087338-3087357 | MS.gene024674:intron | 25.0% |
| !!! | GGTTATCTTATTTTGACATT+TGG | - | chr5.1:3087433-3087452 | MS.gene024674:intron | 25.0% |
| !!! | TGCTTTTTAAGATGAATTGT+AGG | - | chr5.1:3086964-3086983 | MS.gene024674:CDS | 25.0% |
| !!! | TGGTTTGTTTTTATAGTATC+CGG | - | chr5.1:3086583-3086602 | MS.gene024674:CDS | 25.0% |
| !!! | TTCTGTCTTTGATTTTGTTA+TGG | - | chr5.1:3089384-3089403 | MS.gene024674:intron | 25.0% |
| !!! | TTGAAATTGTTGTTTCATCT+AGG | - | chr5.1:3089792-3089811 | MS.gene024674:CDS | 25.0% |
| !!! | TTTTTTTTCCTTTTCAGCAT+TGG | - | chr5.1:3087011-3087030 | MS.gene024674:intron | 25.0% |
| AAACACCAGGTCATAAATAA+TGG | + | chr5.1:3089738-3089757 | None:intergenic | 30.0% | |
| AAACTTTCTTACATCTGATC+TGG | + | chr5.1:3087190-3087209 | None:intergenic | 30.0% | |
| AACTTTCTCGTGGATATAAA+AGG | - | chr5.1:3087855-3087874 | MS.gene024674:intron | 30.0% | |
| AAGGAATATACCTAAGTTTG+AGG | - | chr5.1:3087926-3087945 | MS.gene024674:intron | 30.0% | |
| AATATAGTCCAATGCTGAAA+AGG | + | chr5.1:3087022-3087041 | None:intergenic | 30.0% | |
| ACTAACAACACAATTAAGCT+TGG | - | chr5.1:3086641-3086660 | MS.gene024674:intron | 30.0% | |
| AGTTTGAACCCAGTATTTAT+TGG | + | chr5.1:3086735-3086754 | None:intergenic | 30.0% | |
| ATTGACCATTATTTATGACC+TGG | - | chr5.1:3089730-3089749 | MS.gene024674:CDS | 30.0% | |
| ATTGCATTCAACAAGAAAGT+AGG | + | chr5.1:3087262-3087281 | None:intergenic | 30.0% | |
| CAGCATAATCAAAATATGGA+AGG | + | chr5.1:3087111-3087130 | None:intergenic | 30.0% | |
| GATAATTACCAAATCCCATA+TGG | + | chr5.1:3088679-3088698 | None:intergenic | 30.0% | |
| GATGAAACAACAATTTCAAG+CGG | + | chr5.1:3089791-3089810 | None:intergenic | 30.0% | |
| GCGAAATAATTATCCTAAAC+AGG | + | chr5.1:3088069-3088088 | None:intergenic | 30.0% | |
| GTCAACAATTATTCCAAGAA+CGG | + | chr5.1:3087166-3087185 | None:intergenic | 30.0% | |
| GTCATGACTTAATGTTGAAA+AGG | + | chr5.1:3088102-3088121 | None:intergenic | 30.0% | |
| GTTTGAACCCAGTATTTATT+GGG | + | chr5.1:3086734-3086753 | None:intergenic | 30.0% | |
| TATATGTTTGAGTGTTCAAC+TGG | - | chr5.1:3089459-3089478 | MS.gene024674:intron | 30.0% | |
| TATTCTTTATGAAACAGGCA+AGG | + | chr5.1:3087055-3087074 | None:intergenic | 30.0% | |
| TCTTATTCCACCATACAATA+GGG | - | chr5.1:3087412-3087431 | MS.gene024674:intron | 30.0% | |
| TTGCATTCAACAAGAAAGTA+GGG | + | chr5.1:3087261-3087280 | None:intergenic | 30.0% | |
| ! | AGAAATTGTATGTTGTTTGC+AGG | - | chr5.1:3089558-3089577 | MS.gene024674:intron | 30.0% |
| ! | CTTAATTGTGTTGTTAGTCA+TGG | + | chr5.1:3086639-3086658 | None:intergenic | 30.0% |
| ! | TAAAGTATGTGGTGTCAATT+CGG | - | chr5.1:3087303-3087322 | MS.gene024674:intron | 30.0% |
| ! | TTGAAACTTGAAAGTATGCA+TGG | + | chr5.1:3089524-3089543 | None:intergenic | 30.0% |
| ! | TTTCAGCCATTATTTTCTGT+TGG | + | chr5.1:3089891-3089910 | None:intergenic | 30.0% |
| ! | TTTTTACACACCTCAAACTT+AGG | + | chr5.1:3087939-3087958 | None:intergenic | 30.0% |
| !! | GATTTTTAAAAGCCAGCAAT+TGG | + | chr5.1:3088913-3088932 | None:intergenic | 30.0% |
| !! | TCAAAGCATTGACATGTTAT+TGG | + | chr5.1:3087748-3087767 | None:intergenic | 30.0% |
| !!! | AAAAACTATAGTTTTGAGGG+AGG | + | chr5.1:3087669-3087688 | None:intergenic | 30.0% |
| !!! | AAAACTATAGTTTTGAGGGA+GGG | + | chr5.1:3087668-3087687 | None:intergenic | 30.0% |
| !!! | GGTTTGTTTTTATAGTATCC+GGG | - | chr5.1:3086584-3086603 | MS.gene024674:CDS | 30.0% |
| !!! | TTGCTGGCTTTTAAAAATCA+CGG | - | chr5.1:3088914-3088933 | MS.gene024674:intron | 30.0% |
| AAAACAGATTAGTGAACACC+TGG | - | chr5.1:3088332-3088351 | MS.gene024674:intron | 35.0% | |
| AACAACACAATTAAGCTTGG+AGG | - | chr5.1:3086644-3086663 | MS.gene024674:intron | 35.0% | |
| AAGATAACCCTATTGTATGG+TGG | + | chr5.1:3087422-3087441 | None:intergenic | 35.0% | |
| AAGCAAAAAAGCAAGTTTGG+GGG | + | chr5.1:3088958-3088977 | None:intergenic | 35.0% | |
| ACAATGTACTAATGGGACTT+GGG | + | chr5.1:3087538-3087557 | None:intergenic | 35.0% | |
| AGAAAAACTCTGTACCAAAC+AGG | + | chr5.1:3088840-3088859 | None:intergenic | 35.0% | |
| AGCAGGTTCAAGTATTTCTT+GGG | - | chr5.1:3088621-3088640 | MS.gene024674:intron | 35.0% | |
| AGGATAATTATTTCGCTCTG+TGG | - | chr5.1:3088073-3088092 | MS.gene024674:intron | 35.0% | |
| AGGCAAAAGAAACAAAACCA+CGG | + | chr5.1:3089157-3089176 | None:intergenic | 35.0% | |
| ATAAACTCAGAGACATTGAG+TGG | - | chr5.1:3089862-3089881 | MS.gene024674:intron | 35.0% | |
| ATCAATACTAGTGACGTATG+TGG | - | chr5.1:3088598-3088617 | MS.gene024674:intron | 35.0% | |
| ATGCTTCATAGTGCTTGTTT+GGG | + | chr5.1:3088992-3089011 | None:intergenic | 35.0% | |
| ATGGTGTTTGTTTAGCTAGT+GGG | - | chr5.1:3089403-3089422 | MS.gene024674:intron | 35.0% | |
| ATGTCCTTTGTTACTGTGAA+AGG | - | chr5.1:3086853-3086872 | MS.gene024674:intron | 35.0% | |
| ATTTAAAGGTAGCCACGAAA+AGG | + | chr5.1:3089305-3089324 | None:intergenic | 35.0% | |
| CAAGCAAAAAAGCAAGTTTG+GGG | + | chr5.1:3088959-3088978 | None:intergenic | 35.0% | |
| CTCTAAGCCCAATAAATACT+GGG | - | chr5.1:3086724-3086743 | MS.gene024674:intron | 35.0% | |
| GCAAGCAAAAAAGCAAGTTT+GGG | + | chr5.1:3088960-3088979 | None:intergenic | 35.0% | |
| GGTTCAAACTTCTCAAAAGA+GGG | - | chr5.1:3086745-3086764 | MS.gene024674:intron | 35.0% | |
| GTCCAGTACTTGATACTTTA+GGG | - | chr5.1:3089600-3089619 | MS.gene024674:intron | 35.0% | |
| TACCAAACAGGCTAATAGTT+TGG | + | chr5.1:3088828-3088847 | None:intergenic | 35.0% | |
| TAGGTGCTTTGCTTTATGTT+CGG | - | chr5.1:3089195-3089214 | MS.gene024674:intron | 35.0% | |
| TATGGTGTTTGTTTAGCTAG+TGG | - | chr5.1:3089402-3089421 | MS.gene024674:intron | 35.0% | |
| TCTCTAAGCCCAATAAATAC+TGG | - | chr5.1:3086723-3086742 | MS.gene024674:intron | 35.0% | |
| TGCAAGCAAAAAAGCAAGTT+TGG | + | chr5.1:3088961-3088980 | None:intergenic | 35.0% | |
| TGGTGTCCAACAGAAAATAA+TGG | - | chr5.1:3089882-3089901 | MS.gene024674:intron | 35.0% | |
| TGTATCTTAGAACTCTCTAG+TGG | - | chr5.1:3087966-3087985 | MS.gene024674:intron | 35.0% | |
| TGTCCAGTACTTGATACTTT+AGG | - | chr5.1:3089599-3089618 | MS.gene024674:intron | 35.0% | |
| ! | AAATCACGGCAAATTTGCTT+TGG | - | chr5.1:3088928-3088947 | MS.gene024674:intron | 35.0% |
| ! | GTCTTATTCCACCATACAAT+AGG | - | chr5.1:3087411-3087430 | MS.gene024674:intron | 35.0% |
| ! | TCAATTCGGCAAGTAGTTTT+AGG | - | chr5.1:3087317-3087336 | MS.gene024674:intron | 35.0% |
| ! | TGTATTCCACCCAAAACTTT+TGG | - | chr5.1:3088735-3088754 | MS.gene024674:intron | 35.0% |
| ! | TTCCCTAAAGTATCAAGTAC+TGG | + | chr5.1:3089605-3089624 | None:intergenic | 35.0% |
| ! | TTTCCCTCTTTTGTTCTATC+CGG | - | chr5.1:3089065-3089084 | MS.gene024674:intron | 35.0% |
| !! | CCAAGAAGTACTAACAAATG+GGG | + | chr5.1:3088420-3088439 | None:intergenic | 35.0% |
| !! | CTCTAGGACAATGTACTAAT+GGG | + | chr5.1:3087545-3087564 | None:intergenic | 35.0% |
| !! | GCCAAGAAGTACTAACAAAT+GGG | + | chr5.1:3088421-3088440 | None:intergenic | 35.0% |
| !!! | TGGAGCTTTTGAGTTAAAGT+GGG | + | chr5.1:3088893-3088912 | None:intergenic | 35.0% |
| !!! | TTGGAGCTTTTGAGTTAAAG+TGG | + | chr5.1:3088894-3088913 | None:intergenic | 35.0% |
| AACAATTATCGTGGCTGTTG+AGG | - | chr5.1:3088158-3088177 | MS.gene024674:intron | 40.0% | |
| AACACAATTAAGCTTGGAGG+TGG | - | chr5.1:3086647-3086666 | MS.gene024674:intron | 40.0% | |
| AACTCAAAAGCTCCAATTGC+TGG | - | chr5.1:3088898-3088917 | MS.gene024674:intron | 40.0% | |
| AATAATGGCTGAAAAGCTGC+TGG | - | chr5.1:3089897-3089916 | MS.gene024674:CDS | 40.0% | |
| ACAAAACCACGGTGGTAAAA+AGG | + | chr5.1:3089146-3089165 | None:intergenic | 40.0% | |
| ACAAGCTCGTGACTGTAATT+CGG | - | chr5.1:3087706-3087725 | MS.gene024674:intron | 40.0% | |
| ACAATTATCGTGGCTGTTGA+GGG | - | chr5.1:3088159-3088178 | MS.gene024674:intron | 40.0% | |
| AGGTCAATAACTACATCTCC+CGG | + | chr5.1:3086605-3086624 | None:intergenic | 40.0% | |
| AGGTGCTTTGCTTTATGTTC+GGG | - | chr5.1:3089196-3089215 | MS.gene024674:intron | 40.0% | |
| AGTACATTCAGAATGCTCAC+AGG | - | chr5.1:3088564-3088583 | MS.gene024674:intron | 40.0% | |
| ATAGCTCAGGATTCATTCCA+GGG | + | chr5.1:3089235-3089254 | None:intergenic | 40.0% | |
| CAAAAGAAACAAAACCACGG+TGG | + | chr5.1:3089154-3089173 | None:intergenic | 40.0% | |
| CACACCTTTCACAGTAACAA+AGG | + | chr5.1:3086860-3086879 | None:intergenic | 40.0% | |
| CATGCTTCATAGTGCTTGTT+TGG | + | chr5.1:3088993-3089012 | None:intergenic | 40.0% | |
| CATTTGAAGGAGGAACAAGA+AGG | - | chr5.1:3087907-3087926 | MS.gene024674:intron | 40.0% | |
| CCAGTTCTATCATAGACAAG+AGG | + | chr5.1:3088244-3088263 | None:intergenic | 40.0% | |
| CCATTAGTACATTGTCCTAG+AGG | - | chr5.1:3087543-3087562 | MS.gene024674:intron | 40.0% | |
| CCTCTTGTCTATGATAGAAC+TGG | - | chr5.1:3088241-3088260 | MS.gene024674:intron | 40.0% | |
| CTACCAGTTCTTCCATTTGA+AGG | - | chr5.1:3087894-3087913 | MS.gene024674:intron | 40.0% | |
| CTTCTTGTTCCTCCTTCAAA+TGG | + | chr5.1:3087909-3087928 | None:intergenic | 40.0% | |
| GACAATGTACTAATGGGACT+TGG | + | chr5.1:3087539-3087558 | None:intergenic | 40.0% | |
| GAGCAGGTTCAAGTATTTCT+TGG | - | chr5.1:3088620-3088639 | MS.gene024674:intron | 40.0% | |
| GATAGTTGTAGATGGAGATG+AGG | + | chr5.1:3089824-3089843 | None:intergenic | 40.0% | |
| GATTATGACCAGGATGATTG+AGG | - | chr5.1:3088499-3088518 | MS.gene024674:CDS | 40.0% | |
| GCCAGACTTCATTACAGAAA+TGG | + | chr5.1:3086693-3086712 | None:intergenic | 40.0% | |
| GCCATTTCTGTAATGAAGTC+TGG | - | chr5.1:3086689-3086708 | MS.gene024674:intron | 40.0% | |
| GCTACGATGATAGTTGTAGA+TGG | + | chr5.1:3089832-3089851 | None:intergenic | 40.0% | |
| GGATATAAAAGGACCTGCAT+TGG | - | chr5.1:3087866-3087885 | MS.gene024674:intron | 40.0% | |
| GGGTTCAAACTTCTCAAAAG+AGG | - | chr5.1:3086744-3086763 | MS.gene024674:intron | 40.0% | |
| GGTTATCTCCATATGGGATT+TGG | - | chr5.1:3088668-3088687 | MS.gene024674:intron | 40.0% | |
| GTAGATAAGTTAGTGGTGAG+TGG | - | chr5.1:3086518-3086537 | MS.gene024674:CDS | 40.0% | |
| TAATTCTTCACGATGCAGGT+AGG | - | chr5.1:3089176-3089195 | MS.gene024674:intron | 40.0% | |
| TACCTGCATCGTGAAGAATT+AGG | + | chr5.1:3089177-3089196 | None:intergenic | 40.0% | |
| TAGCCGGATAGAACAAAAGA+GGG | + | chr5.1:3089071-3089090 | None:intergenic | 40.0% | |
| TAGTCATGGACATGGTAGAT+AGG | + | chr5.1:3086625-3086644 | None:intergenic | 40.0% | |
| TCGTGGCTACCTTTAAATCA+TGG | - | chr5.1:3089307-3089326 | MS.gene024674:intron | 40.0% | |
| TGAATTGTAGGCTTGCATTC+TGG | - | chr5.1:3086976-3086995 | MS.gene024674:CDS | 40.0% | |
| TGGCTTAAATGGACGTGTTT+GGG | - | chr5.1:3089649-3089668 | MS.gene024674:intron | 40.0% | |
| TTAGCCGGATAGAACAAAAG+AGG | + | chr5.1:3089072-3089091 | None:intergenic | 40.0% | |
| TTCATAGTGCTTGTTTGGGA+TGG | + | chr5.1:3088988-3089007 | None:intergenic | 40.0% | |
| TTGGCTTAAATGGACGTGTT+TGG | - | chr5.1:3089648-3089667 | MS.gene024674:intron | 40.0% | |
| TTTCTGTAATGAAGTCTGGC+AGG | - | chr5.1:3086693-3086712 | MS.gene024674:intron | 40.0% | |
| ! | CCACGTTTTCTGTAAAAGCA+CGG | - | chr5.1:3088862-3088881 | MS.gene024674:intron | 40.0% |
| ! | CCCCATTTGTTAGTACTTCT+TGG | - | chr5.1:3088417-3088436 | MS.gene024674:intron | 40.0% |
| ! | CGTGCTTTTACAGAAAACGT+GGG | + | chr5.1:3088864-3088883 | None:intergenic | 40.0% |
| ! | GACCAAACTATTAGCCTGTT+TGG | - | chr5.1:3088823-3088842 | MS.gene024674:intron | 40.0% |
| ! | GAGATTGCAGTTGGCTTAAA+TGG | - | chr5.1:3089638-3089657 | MS.gene024674:intron | 40.0% |
| ! | TGTGTTGTTAGTCATGGACA+TGG | + | chr5.1:3086633-3086652 | None:intergenic | 40.0% |
| !! | AGTATCAAGTACTGGACATG+TGG | + | chr5.1:3089597-3089616 | None:intergenic | 40.0% |
| !! | CCTCTAGGACAATGTACTAA+TGG | + | chr5.1:3087546-3087565 | None:intergenic | 40.0% |
| !! | GGCCAAGAAGTACTAACAAA+TGG | + | chr5.1:3088422-3088441 | None:intergenic | 40.0% |
| !! | GTATCAAGTACTGGACATGT+GGG | + | chr5.1:3089596-3089615 | None:intergenic | 40.0% |
| !!! | GTGAATCCAAAAGTTTTGGG+TGG | + | chr5.1:3088744-3088763 | None:intergenic | 40.0% |
| AACAACAACAGGGGAATGAC+AGG | + | chr5.1:3089106-3089125 | None:intergenic | 45.0% | |
| ACTGGTAGAAATGCCAATGC+AGG | + | chr5.1:3087882-3087901 | None:intergenic | 45.0% | |
| AGAGGCAAGATTTCTCAAGC+AGG | + | chr5.1:3088226-3088245 | None:intergenic | 45.0% | |
| ATCTGTGCAGAACTTTCTCG+TGG | - | chr5.1:3087845-3087864 | MS.gene024674:intron | 45.0% | |
| CAGGTCAAGTGTTAGTTAGC+CGG | + | chr5.1:3089087-3089106 | None:intergenic | 45.0% | |
| CCAGTTCTTCCATTTGAAGG+AGG | - | chr5.1:3087897-3087916 | MS.gene024674:intron | 45.0% | |
| CCTCCTTCAAATGGAAGAAC+TGG | + | chr5.1:3087900-3087919 | None:intergenic | 45.0% | |
| CTTGGGCTGAATCATGCATT+TGG | - | chr5.1:3088638-3088657 | MS.gene024674:intron | 45.0% | |
| CTTGGGTTTCAGAAAGTCAG+AGG | + | chr5.1:3087521-3087540 | None:intergenic | 45.0% | |
| GATAGCTCAGGATTCATTCC+AGG | + | chr5.1:3089236-3089255 | None:intergenic | 45.0% | |
| GTAGGGCAGAACTAAAAGAC+TGG | + | chr5.1:3087244-3087263 | None:intergenic | 45.0% | |
| TAATGAAGTCTGGCAGGCTT+AGG | - | chr5.1:3086699-3086718 | MS.gene024674:intron | 45.0% | |
| TATGGCACGCTGAAACTACA+AGG | + | chr5.1:3089685-3089704 | None:intergenic | 45.0% | |
| TGCCTAATTCTTCACGATGC+AGG | - | chr5.1:3089172-3089191 | MS.gene024674:intron | 45.0% | |
| TGTTTAGCTAGTGGGAAAGC+TGG | - | chr5.1:3089411-3089430 | MS.gene024674:intron | 45.0% | |
| ! | AGCTATCATGCACTGATGGT+TGG | - | chr5.1:3089249-3089268 | MS.gene024674:CDS | 45.0% |
| ! | AGGTTTCCTTTTTACCACCG+TGG | - | chr5.1:3089137-3089156 | MS.gene024674:intron | 45.0% |
| ! | CCGTGCTTTTACAGAAAACG+TGG | + | chr5.1:3088865-3088884 | None:intergenic | 45.0% |
| ! | TAAGCCTAGAGTACTCCTCT+AGG | + | chr5.1:3087561-3087580 | None:intergenic | 45.0% |
| !! | GAGTTTGGTGCCCTAAAAGA+AGG | - | chr5.1:3089435-3089454 | MS.gene024674:intron | 45.0% |
| !! | TTGTCCTAGAGGAGTACTCT+AGG | - | chr5.1:3087554-3087573 | MS.gene024674:intron | 45.0% |
| !!! | TATATAATATTATCTTTTTA+TGG | - | chr5.1:3088011-3088030 | MS.gene024674:intron | 5.0% |
| AACCTGCAACGTGCGTTCTT+AGG | + | chr5.1:3088710-3088729 | None:intergenic | 50.0% | |
| ACAGTATGTGCCACATGCAG+AGG | - | chr5.1:3087137-3087156 | MS.gene024674:intron | 50.0% | |
| ACTAGTGACGTATGTGGAGC+AGG | - | chr5.1:3088604-3088623 | MS.gene024674:intron | 50.0% | |
| AGAACGGAATCCTCTGCATG+TGG | + | chr5.1:3087150-3087169 | None:intergenic | 50.0% | |
| AGTGGGAAAGCTGGAGAGTT+TGG | - | chr5.1:3089420-3089439 | MS.gene024674:intron | 50.0% | |
| CATGCAGAGGATTCCGTTCT+TGG | - | chr5.1:3087150-3087169 | MS.gene024674:intron | 50.0% | |
| CCATCAGTGCATGATAGCTC+AGG | + | chr5.1:3089248-3089267 | None:intergenic | 50.0% | |
| CCTGAGCTATCATGCACTGA+TGG | - | chr5.1:3089245-3089264 | MS.gene024674:CDS | 50.0% | |
| CTCGTGACTGTAATTCGGAG+TGG | - | chr5.1:3087711-3087730 | MS.gene024674:intron | 50.0% | |
| CTCTCGTTCGAGATTGCAGT+TGG | - | chr5.1:3089629-3089648 | MS.gene024674:intron | 50.0% | |
| GACCAGGATGATTGAGGTTG+AGG | - | chr5.1:3088505-3088524 | MS.gene024674:CDS | 50.0% | |
| TGCCTCAACCTCAATCATCC+TGG | + | chr5.1:3088510-3088529 | None:intergenic | 50.0% | |
| TTCCTAAGAACGCACGTTGC+AGG | - | chr5.1:3088705-3088724 | MS.gene024674:intron | 50.0% | |
| CGGGTCGTTAAAGCAAACCC+TGG | - | chr5.1:3089215-3089234 | MS.gene024674:intron | 55.0% | |
| GGCTGAAAAGCTGCTGGAGA+GGG | - | chr5.1:3089903-3089922 | MS.gene024674:CDS | 55.0% | |
| TGGCTGAAAAGCTGCTGGAG+AGG | - | chr5.1:3089902-3089921 | MS.gene024674:CDS | 55.0% | |
| TGTGTGTGTGTGTGTGTGCG+CGG | - | chr5.1:3086876-3086895 | MS.gene024674:intron | 55.0% | |
| GCTTGGAGGTGGTCTACGTC+AGG | - | chr5.1:3086658-3086677 | MS.gene024674:intron | 60.0% | |
| GGCTGTTGAGGGATGTGCGA+AGG | - | chr5.1:3088170-3088189 | MS.gene024674:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.1 | gene | 3086494 | 3089933 | 3086494 | ID=MS.gene024674 |
| chr5.1 | mRNA | 3086494 | 3089933 | 3086494 | ID=MS.gene024674.t1;Parent=MS.gene024674 |
| chr5.1 | exon | 3089895 | 3089933 | 3089895 | ID=MS.gene024674.t1.exon1;Parent=MS.gene024674.t1 |
| chr5.1 | CDS | 3089895 | 3089933 | 3089895 | ID=cds.MS.gene024674.t1;Parent=MS.gene024674.t1 |
| chr5.1 | exon | 3089661 | 3089828 | 3089661 | ID=MS.gene024674.t1.exon2;Parent=MS.gene024674.t1 |
| chr5.1 | CDS | 3089661 | 3089828 | 3089661 | ID=cds.MS.gene024674.t1;Parent=MS.gene024674.t1 |
| chr5.1 | exon | 3089230 | 3089286 | 3089230 | ID=MS.gene024674.t1.exon3;Parent=MS.gene024674.t1 |
| chr5.1 | CDS | 3089230 | 3089286 | 3089230 | ID=cds.MS.gene024674.t1;Parent=MS.gene024674.t1 |
| chr5.1 | exon | 3088480 | 3088572 | 3088480 | ID=MS.gene024674.t1.exon4;Parent=MS.gene024674.t1 |
| chr5.1 | CDS | 3088480 | 3088572 | 3088480 | ID=cds.MS.gene024674.t1;Parent=MS.gene024674.t1 |
| chr5.1 | exon | 3087161 | 3087233 | 3087161 | ID=MS.gene024674.t1.exon5;Parent=MS.gene024674.t1 |
| chr5.1 | CDS | 3087161 | 3087233 | 3087161 | ID=cds.MS.gene024674.t1;Parent=MS.gene024674.t1 |
| chr5.1 | exon | 3086934 | 3087009 | 3086934 | ID=MS.gene024674.t1.exon6;Parent=MS.gene024674.t1 |
| chr5.1 | CDS | 3086934 | 3087009 | 3086934 | ID=cds.MS.gene024674.t1;Parent=MS.gene024674.t1 |
| chr5.1 | exon | 3086757 | 3086847 | 3086757 | ID=MS.gene024674.t1.exon7;Parent=MS.gene024674.t1 |
| chr5.1 | CDS | 3086757 | 3086847 | 3086757 | ID=cds.MS.gene024674.t1;Parent=MS.gene024674.t1 |
| chr5.1 | exon | 3086494 | 3086613 | 3086494 | ID=MS.gene024674.t1.exon8;Parent=MS.gene024674.t1 |
| chr5.1 | CDS | 3086494 | 3086613 | 3086494 | ID=cds.MS.gene024674.t1;Parent=MS.gene024674.t1 |
| Gene Sequence |
| Protein sequence |
