Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene22316.t1 | PNY12750.1 | 87.7 | 203 | 23 | 1 | 4 | 206 | 8 | 208 | 1.90E-96 | 362.1 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene22316.t1 | Q7KWX9 | 43.5 | 191 | 101 | 3 | 10 | 199 | 6 | 190 | 3.4e-38 | 159.8 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene22316.t1 | A0A2K3PBT7 | 87.7 | 203 | 23 | 1 | 4 | 206 | 8 | 208 | 1.4e-96 | 362.1 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene22316 | MS.gene31317 | PPI |
| MS.gene043239 | MS.gene22316 | PPI |
| MS.gene21656 | MS.gene22316 | PPI |
| MS.gene53118 | MS.gene22316 | PPI |
| MS.gene21912 | MS.gene22316 | PPI |
| MS.gene21710 | MS.gene22316 | PPI |
| MS.gene058147 | MS.gene22316 | PPI |
| MS.gene050621 | MS.gene22316 | PPI |
| MS.gene52227 | MS.gene22316 | PPI |
| MS.gene27712 | MS.gene22316 | PPI |
| MS.gene024674 | MS.gene22316 | PPI |
| MS.gene024734 | MS.gene22316 | PPI |
| MS.gene025936 | MS.gene22316 | PPI |
| MS.gene072735 | MS.gene22316 | PPI |
| MS.gene79599 | MS.gene22316 | PPI |
| MS.gene043576 | MS.gene22316 | PPI |
| MS.gene22822 | MS.gene22316 | PPI |
| MS.gene22316 | MS.gene021698 | PPI |
| MS.gene85900 | MS.gene22316 | PPI |
| MS.gene041852 | MS.gene22316 | PPI |
| MS.gene42834 | MS.gene22316 | PPI |
| MS.gene024471 | MS.gene22316 | PPI |
| MS.gene91519 | MS.gene22316 | PPI |
| MS.gene78555 | MS.gene22316 | PPI |
| MS.gene55323 | MS.gene22316 | PPI |
| MS.gene023858 | MS.gene22316 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene22316.t1 | MTR_5g043110 | 91.192 | 193 | 15 | 1 | 7 | 199 | 11 | 201 | 6.86e-131 | 368 |
| MS.gene22316.t1 | MTR_5g009430 | 91.358 | 81 | 7 | 0 | 118 | 198 | 22 | 102 | 5.60e-49 | 157 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene22316.t1 | AT4G32175 | 69.347 | 199 | 59 | 1 | 1 | 199 | 5 | 201 | 6.93e-102 | 295 |
| MS.gene22316.t1 | AT2G25355 | 68.912 | 193 | 58 | 1 | 7 | 199 | 11 | 201 | 6.60e-99 | 288 |
| MS.gene22316.t1 | AT2G25355 | 71.098 | 173 | 50 | 0 | 27 | 199 | 1 | 173 | 2.09e-92 | 270 |
Find 55 sgRNAs with CRISPR-Local
Find 226 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ACTAACTTATCTACAAAATT+TGG | 0.140723 | 5.4:+4091981 | None:intergenic |
| CATGCACAGGATTCCGTTCT+TGG | 0.232390 | 5.4:-4091339 | MS.gene22316:CDS |
| GAGATTGCAGTTGGCTTAAA+TGG | 0.270972 | 5.4:-4088846 | MS.gene22316:CDS |
| AGTTTGAACCCAGTATTTAT+TGG | 0.291561 | 5.4:+4091758 | None:intergenic |
| TCTCTAAGCCCAATAAATAC+TGG | 0.308371 | 5.4:-4091767 | MS.gene22316:CDS |
| GTTTGAACCCAGTATTTATT+GGG | 0.332544 | 5.4:+4091759 | None:intergenic |
| AACTTTCTCGTGGATATAAA+AGG | 0.344541 | 5.4:-4090631 | MS.gene22316:CDS |
| TGGCTTAAATGGACGTGTTT+GGG | 0.360369 | 5.4:-4088835 | MS.gene22316:intron |
| TTGGCTTAAATGGACGTGTT+TGG | 0.361897 | 5.4:-4088836 | MS.gene22316:CDS |
| TAGGTGCTTTGCTTTATGTT+CGG | 0.366163 | 5.4:-4089289 | MS.gene22316:CDS |
| TGTCCAGTACTTGATACTAT+AGG | 0.375325 | 5.4:-4088885 | MS.gene22316:CDS |
| CTACCAGTTCTTGCATTTGA+AGG | 0.386437 | 5.4:-4090592 | MS.gene22316:CDS |
| AGGTGCTTTGCTTTATGTTC+GGG | 0.387671 | 5.4:-4089288 | MS.gene22316:CDS |
| AAACTTTCTTACATCTGATC+TGG | 0.396631 | 5.4:+4091302 | None:intergenic |
| TATATGTTTGAGTGTTCAAC+TGG | 0.403633 | 5.4:-4089025 | MS.gene22316:CDS |
| GTCCAGTACTTGATACTATA+GGG | 0.405838 | 5.4:-4088884 | MS.gene22316:CDS |
| GATAGCTCAGGATTCATTCC+AGG | 0.436276 | 5.4:+4089251 | None:intergenic |
| CTTAATTGTGTTGTTAGTCA+TGG | 0.438397 | 5.4:+4091854 | None:intergenic |
| TAATGAAGTCTGGCAGGCTT+AGG | 0.446128 | 5.4:-4091791 | MS.gene22316:CDS |
| AGTGGGAAAGCTGTAGAGTT+TGG | 0.447204 | 5.4:-4089064 | MS.gene22316:CDS |
| GCCAGACTTCATTACAGAAA+TGG | 0.452196 | 5.4:+4091800 | None:intergenic |
| CCTCCTTCAAATGCAAGAAC+TGG | 0.470253 | 5.4:+4090589 | None:intergenic |
| CTCTCGTTCGAGATTGCAGT+TGG | 0.472739 | 5.4:-4088855 | MS.gene22316:CDS |
| TTCCCTATAGTATCAAGTAC+TGG | 0.475915 | 5.4:+4088882 | None:intergenic |
| AAGGAATATACCTAAGTTTG+AGG | 0.485197 | 5.4:-4090560 | MS.gene22316:intron |
| CTCTAAGCCCAATAAATACT+GGG | 0.487763 | 5.4:-4091766 | MS.gene22316:CDS |
| GCCATTTCTGTAATGAAGTC+TGG | 0.493308 | 5.4:-4091801 | MS.gene22316:CDS |
| GAGTTTGGTGCCCTAAAAGA+AGG | 0.494629 | 5.4:-4089049 | MS.gene22316:CDS |
| TAGTCATGGACATGGTAGAT+AGG | 0.509052 | 5.4:+4091868 | None:intergenic |
| ACTAACAACACAATTAAGCT+TGG | 0.517446 | 5.4:-4091849 | MS.gene22316:CDS |
| GCTTGGAGGTGGTCTACGTC+AGG | 0.522629 | 5.4:-4091832 | MS.gene22316:CDS |
| CCATCAGTGCATGATAGCTC+AGG | 0.528459 | 5.4:+4089239 | None:intergenic |
| TTTCTGTAATGAAGTCTGGC+AGG | 0.532327 | 5.4:-4091797 | MS.gene22316:CDS |
| AACAACACAATTAAGCTTGG+AGG | 0.534360 | 5.4:-4091846 | MS.gene22316:CDS |
| ATGGTGTTTGTTTAGCTAGT+GGG | 0.536414 | 5.4:-4089081 | MS.gene22316:intron |
| GGGTTCAAACTTCTCAAAAG+AGG | 0.538553 | 5.4:-4091746 | MS.gene22316:CDS |
| GGATATAAAAGGACCTGCAT+TGG | 0.548121 | 5.4:-4090620 | MS.gene22316:CDS |
| ACAGTATGTGCCACATGCAC+AGG | 0.549370 | 5.4:-4091352 | MS.gene22316:intron |
| AGGTCAATAACTACATCTCC+CGG | 0.553146 | 5.4:+4091888 | None:intergenic |
| ACTGGTAGAAATGCCAATGC+AGG | 0.555975 | 5.4:+4090607 | None:intergenic |
| GTCAACAATTATTCCAAGAA+CGG | 0.559589 | 5.4:+4091326 | None:intergenic |
| ATAGCTCAGGATTCATTCCA+GGG | 0.563878 | 5.4:+4089252 | None:intergenic |
| AGTATCAAGTACTGGACATG+TGG | 0.565192 | 5.4:+4088890 | None:intergenic |
| CCAGTTCTTGCATTTGAAGG+AGG | 0.570740 | 5.4:-4090589 | MS.gene22316:CDS |
| CCTGAGCTATCATGCACTGA+TGG | 0.579665 | 5.4:-4089239 | MS.gene22316:intron |
| ATCTGTGCAGAACTTTCTCG+TGG | 0.584398 | 5.4:-4090641 | MS.gene22316:intron |
| GGTTCAAACTTCTCAAAAGA+GGG | 0.587352 | 5.4:-4091745 | MS.gene22316:intron |
| AACACAATTAAGCTTGGAGG+TGG | 0.592912 | 5.4:-4091843 | MS.gene22316:CDS |
| GTAGTCTCATAGACAGTGAT+CGG | 0.594787 | 5.4:+4088450 | None:intergenic |
| CGGGTCGTTAAAGCAAACCC+TGG | 0.632105 | 5.4:-4089269 | MS.gene22316:CDS |
| CATTTGAAGGAGGAACAAGA+AGG | 0.632473 | 5.4:-4090579 | MS.gene22316:CDS |
| TAACTTGCATCAAACAGTCA+AGG | 0.635065 | 5.4:+4088394 | None:intergenic |
| AGAACGGAATCCTGTGCATG+TGG | 0.644833 | 5.4:+4091342 | None:intergenic |
| GTATCAAGTACTGGACATGT+GGG | 0.672226 | 5.4:+4088891 | None:intergenic |
| TGTGTTGTTAGTCATGGACA+TGG | 0.714048 | 5.4:+4091860 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAAATAAAAAAAATTGCC+AGG | + | chr5.4:4090266-4090285 | None:intergenic | 15.0% |
| !!! | TATTTTCTTAGTCAAAATTA+AGG | + | chr5.4:4089529-4089548 | None:intergenic | 15.0% |
| !!! | TTTTTGTATTTATTCTATGT+TGG | - | chr5.4:4089295-4089314 | MS.gene22316:intron | 15.0% |
| !! | AAAACAGCATAATCAAAATA+TGG | + | chr5.4:4089025-4089044 | None:intergenic | 20.0% |
| !! | AACATTATATAACAACAACA+GGG | + | chr5.4:4091031-4091050 | None:intergenic | 20.0% |
| !! | AAGTTTATTCTTTATGAAAC+AGG | + | chr5.4:4088970-4088989 | None:intergenic | 20.0% |
| !! | ACTAACTTATCTACAAAATT+TGG | + | chr5.4:4088421-4088440 | None:intergenic | 20.0% |
| !! | ATAAGAGAATTATTAATCAG+AGG | + | chr5.4:4090199-4090218 | None:intergenic | 20.0% |
| !! | ATGAGACAAGAAATAAAATA+TGG | + | chr5.4:4091618-4091637 | None:intergenic | 20.0% |
| !! | GTCTATATTCAGAAAAATAT+TGG | - | chr5.4:4089365-4089384 | MS.gene22316:intron | 20.0% |
| !! | GTTAATGTCATAATTCATAA+AGG | + | chr5.4:4090054-4090073 | None:intergenic | 20.0% |
| !! | TAATAAATAAGATTATGACC+AGG | - | chr5.4:4090402-4090421 | MS.gene22316:intron | 20.0% |
| !! | TATATAATAGAAACCTGTTT+AGG | - | chr5.4:4089966-4089985 | MS.gene22316:intron | 20.0% |
| !! | TATGTTAACTATAAAGTATG+CGG | - | chr5.4:4089202-4089221 | MS.gene22316:intron | 20.0% |
| !! | TATTATAAGATTATGCGAAA+AGG | + | chr5.4:4089393-4089412 | None:intergenic | 20.0% |
| !! | TTCATAAAGAATAAACTTGT+AGG | - | chr5.4:4088972-4088991 | MS.gene22316:intron | 20.0% |
| !!! | AAACAAAAACTATAGTTTTG+AGG | + | chr5.4:4089583-4089602 | None:intergenic | 20.0% |
| !!! | AAACATATAACCTTCTTTTA+GGG | + | chr5.4:4091363-4091382 | None:intergenic | 20.0% |
| !!! | AAATTTTGTAGATAAGTTAG+TGG | - | chr5.4:4088420-4088439 | MS.gene22316:CDS | 20.0% |
| !!! | AACAAAAACTATAGTTTTGA+GGG | + | chr5.4:4089582-4089601 | None:intergenic | 20.0% |
| !!! | ACAATGAAATGTTTTAACTT+GGG | + | chr5.4:4090356-4090375 | None:intergenic | 20.0% |
| !!! | TAATATTATCTTTTTATGGC+AGG | - | chr5.4:4089928-4089947 | MS.gene22316:intron | 20.0% |
| !!! | TACAATGAAATGTTTTAACT+TGG | + | chr5.4:4090357-4090376 | None:intergenic | 20.0% |
| !!! | TCATTGTATAGTTTTTTACT+AGG | - | chr5.4:4090369-4090388 | MS.gene22316:intron | 20.0% |
| ! | AAAGTCTTCAACAATAAACT+TGG | + | chr5.4:4090309-4090328 | None:intergenic | 25.0% |
| ! | AAATAGAATTAGTCATTGCA+TGG | - | chr5.4:4089544-4089563 | MS.gene22316:intron | 25.0% |
| ! | AAATTAAGGACTTAATAGAG+TGG | + | chr5.4:4089515-4089534 | None:intergenic | 25.0% |
| ! | AAATTCATTCATGACTTCTA+TGG | - | chr5.4:4088472-4088491 | MS.gene22316:intron | 25.0% |
| ! | AATAAGATAACCCTATTGTA+TGG | + | chr5.4:4089335-4089354 | None:intergenic | 25.0% |
| ! | AATATGTACAAAGTGTGTTA+AGG | + | chr5.4:4088820-4088839 | None:intergenic | 25.0% |
| ! | AATCATGCATTTGGATTAAT+AGG | - | chr5.4:4090560-4090579 | MS.gene22316:intron | 25.0% |
| ! | ACATTATATAACAACAACAG+GGG | + | chr5.4:4091030-4091049 | None:intergenic | 25.0% |
| ! | AGAAAAACTCCATGATTTAA+AGG | + | chr5.4:4091234-4091253 | None:intergenic | 25.0% |
| ! | ATTAATAGGTTATCTCCATA+TGG | - | chr5.4:4090574-4090593 | MS.gene22316:CDS | 25.0% |
| ! | GAACATTATATAACAACAAC+AGG | + | chr5.4:4091032-4091051 | None:intergenic | 25.0% |
| ! | TATGACATTAACAATTATCG+TGG | - | chr5.4:4090062-4090081 | MS.gene22316:intron | 25.0% |
| ! | TTAATAGGTTATCTCCATAT+GGG | - | chr5.4:4090575-4090594 | MS.gene22316:CDS | 25.0% |
| ! | TTGTGTTTGCAAAACTAAAA+TGG | + | chr5.4:4091279-4091298 | None:intergenic | 25.0% |
| ! | TTGTTGAATGCAATTCTTAT+AGG | - | chr5.4:4089178-4089197 | MS.gene22316:intron | 25.0% |
| !! | AATGAAAATTTTCAAACACC+AGG | + | chr5.4:4091666-4091685 | None:intergenic | 25.0% |
| !! | AGAAATTGTATGTTGTTTGT+AGG | - | chr5.4:4091473-4091492 | MS.gene22316:intron | 25.0% |
| !! | ATTAGTGAATCCAAAAGTTT+TGG | + | chr5.4:4090661-4090680 | None:intergenic | 25.0% |
| !! | CAAACATATAACCTTCTTTT+AGG | + | chr5.4:4091364-4091383 | None:intergenic | 25.0% |
| !! | CATTTTTAAATTCCTTTTCG+TGG | - | chr5.4:4091205-4091224 | MS.gene22316:intron | 25.0% |
| !! | GTTGTTGTTATATAATGTTC+AGG | - | chr5.4:4091032-4091051 | MS.gene22316:intron | 25.0% |
| !! | TATTGTGATATCTTTTACCT+CGG | - | chr5.4:4089411-4089430 | MS.gene22316:intron | 25.0% |
| !! | TTAGTGAATCCAAAAGTTTT+GGG | + | chr5.4:4090660-4090679 | None:intergenic | 25.0% |
| !!! | AGGATTTCAGTTTTGAAATT+AGG | - | chr5.4:4089247-4089266 | MS.gene22316:CDS | 25.0% |
| !!! | GGATTTCAGTTTTGAAATTA+GGG | - | chr5.4:4089248-4089267 | MS.gene22316:CDS | 25.0% |
| !!! | GGTTATCTTATTTTGACATT+TGG | - | chr5.4:4089343-4089362 | MS.gene22316:intron | 25.0% |
| !!! | TGGTTTGTTTTTATAGTATC+CGG | - | chr5.4:4088492-4088511 | MS.gene22316:intron | 25.0% |
| !!! | TTCTGTCTTTGATTTTGTTA+TGG | - | chr5.4:4091299-4091318 | MS.gene22316:intron | 25.0% |
| !!! | TTGAAATTGTTGTTTCATCT+GGG | - | chr5.4:4091707-4091726 | MS.gene22316:intron | 25.0% |
| !!! | TTTTTTTTCCTTTTCAGCAT+TGG | - | chr5.4:4088921-4088940 | MS.gene22316:intron | 25.0% |
| AAACTTTCTTACATCTGATC+TGG | + | chr5.4:4089100-4089119 | None:intergenic | 30.0% | |
| AACTTTCTCGTGGATATAAA+AGG | - | chr5.4:4089768-4089787 | MS.gene22316:intron | 30.0% | |
| AAGATATGCATTTCATGTGT+TGG | + | chr5.4:4091890-4091909 | None:intergenic | 30.0% | |
| AAGGAATATACCTAAGTTTG+AGG | - | chr5.4:4089839-4089858 | MS.gene22316:intron | 30.0% | |
| AATATAGTCCAATGCTGAAA+AGG | + | chr5.4:4088932-4088951 | None:intergenic | 30.0% | |
| ACTAACAACACAATTAAGCT+TGG | - | chr5.4:4088550-4088569 | MS.gene22316:intron | 30.0% | |
| AGTTTGAACCCAGTATTTAT+TGG | + | chr5.4:4088644-4088663 | None:intergenic | 30.0% | |
| ATTGCATTCAACAAGAAAGT+AGG | + | chr5.4:4089172-4089191 | None:intergenic | 30.0% | |
| CAGCATAATCAAAATATGGA+AGG | + | chr5.4:4089021-4089040 | None:intergenic | 30.0% | |
| CTTCAACAATAAACTTGGAA+AGG | + | chr5.4:4090304-4090323 | None:intergenic | 30.0% | |
| GATAATTACCAAATCCCATA+TGG | + | chr5.4:4090592-4090611 | None:intergenic | 30.0% | |
| GATGAAACAACAATTTCAAG+CGG | + | chr5.4:4091706-4091725 | None:intergenic | 30.0% | |
| GCGAAATAATTATCCTAAAC+AGG | + | chr5.4:4089982-4090001 | None:intergenic | 30.0% | |
| GTCAACAATTATTCCAAGAA+CGG | + | chr5.4:4089076-4089095 | None:intergenic | 30.0% | |
| GTCATGACTTAATGTTGAAA+AGG | + | chr5.4:4090015-4090034 | None:intergenic | 30.0% | |
| GTTTGAACCCAGTATTTATT+GGG | + | chr5.4:4088643-4088662 | None:intergenic | 30.0% | |
| TATATGTTTGAGTGTTCAAC+TGG | - | chr5.4:4091374-4091393 | MS.gene22316:intron | 30.0% | |
| TATTCTTTATGAAACAGGCA+AGG | + | chr5.4:4088965-4088984 | None:intergenic | 30.0% | |
| TCTTATTCCACCATACAATA+GGG | - | chr5.4:4089322-4089341 | MS.gene22316:intron | 30.0% | |
| TTGCATTCAACAAGAAAGTA+GGG | + | chr5.4:4089171-4089190 | None:intergenic | 30.0% | |
| ! | CTTAATTGTGTTGTTAGTCA+TGG | + | chr5.4:4088548-4088567 | None:intergenic | 30.0% |
| ! | TAAATCATGGAGTTTTTCTC+AGG | - | chr5.4:4091235-4091254 | MS.gene22316:intron | 30.0% |
| ! | TTGAAACTTGAAAGTATGCA+TGG | + | chr5.4:4091439-4091458 | None:intergenic | 30.0% |
| ! | TTTCAGCCATTATTTTCTGT+TGG | + | chr5.4:4091806-4091825 | None:intergenic | 30.0% |
| ! | TTTTTACACACCTCAAACTT+AGG | + | chr5.4:4089852-4089871 | None:intergenic | 30.0% |
| !! | CTTGAAATTGTTGTTTCATC+TGG | - | chr5.4:4091706-4091725 | MS.gene22316:intron | 30.0% |
| !! | GATTTTTAAAAGCCAGCAAT+TGG | + | chr5.4:4090827-4090846 | None:intergenic | 30.0% |
| !! | TCAAAGCATTGACATGTTAT+TGG | + | chr5.4:4089661-4089680 | None:intergenic | 30.0% |
| !!! | AAAAACTATAGTTTTGAGGG+AGG | + | chr5.4:4089579-4089598 | None:intergenic | 30.0% |
| !!! | AAAACTATAGTTTTGAGGGA+GGG | + | chr5.4:4089578-4089597 | None:intergenic | 30.0% |
| !!! | CTTGCTTTTTAAGATGATGT+AGG | - | chr5.4:4088859-4088878 | MS.gene22316:CDS | 30.0% |
| !!! | GGTTTGTTTTTATAGTATCC+GGG | - | chr5.4:4088493-4088512 | MS.gene22316:intron | 30.0% |
| !!! | TTGCTGGCTTTTAAAAATCA+CGG | - | chr5.4:4090828-4090847 | MS.gene22316:intron | 30.0% |
| AAAACAGATTAGTGAACACC+TGG | - | chr5.4:4090245-4090264 | MS.gene22316:intron | 35.0% | |
| AAACACCAGGTCATGAATAA+TGG | + | chr5.4:4091653-4091672 | None:intergenic | 35.0% | |
| AACAACACAATTAAGCTTGG+AGG | - | chr5.4:4088553-4088572 | MS.gene22316:intron | 35.0% | |
| AAGATAACCCTATTGTATGG+TGG | + | chr5.4:4089332-4089351 | None:intergenic | 35.0% | |
| AAGCAAAAAAGCAAGTTTGG+GGG | + | chr5.4:4090872-4090891 | None:intergenic | 35.0% | |
| ACAATGTACTAATGGGACTT+GGG | + | chr5.4:4089448-4089467 | None:intergenic | 35.0% | |
| AGAAAAACTCTGTACCAAAC+AGG | + | chr5.4:4090754-4090773 | None:intergenic | 35.0% | |
| AGGATAATTATTTCGCTCTG+TGG | - | chr5.4:4089986-4090005 | MS.gene22316:intron | 35.0% | |
| AGGCAAAAGAAACAAAACCA+CGG | + | chr5.4:4091072-4091091 | None:intergenic | 35.0% | |
| ATAAACTCAGAGACATTGAG+TGG | - | chr5.4:4091777-4091796 | MS.gene22316:CDS | 35.0% | |
| ATCAATACTAGTGACGTATG+TGG | - | chr5.4:4090511-4090530 | MS.gene22316:intron | 35.0% | |
| ATGCTTCATATGTGCTTGTT+TGG | + | chr5.4:4090907-4090926 | None:intergenic | 35.0% | |
| ATGGTGTTTGTTTAGCTAGT+GGG | - | chr5.4:4091318-4091337 | MS.gene22316:CDS | 35.0% | |
| ATGTCCTTTGTTACTGTGAA+AGG | - | chr5.4:4088752-4088771 | MS.gene22316:intron | 35.0% | |
| ATTGACCATTATTCATGACC+TGG | - | chr5.4:4091645-4091664 | MS.gene22316:intron | 35.0% | |
| ATTTAAAGGTAGCCACGAAA+AGG | + | chr5.4:4091220-4091239 | None:intergenic | 35.0% | |
| CAAGCAAAAAAGCAAGTTTG+GGG | + | chr5.4:4090873-4090892 | None:intergenic | 35.0% | |
| CTCTAAGCCCAATAAATACT+GGG | - | chr5.4:4088633-4088652 | MS.gene22316:intron | 35.0% | |
| GCAAGCAAAAAAGCAAGTTT+GGG | + | chr5.4:4090874-4090893 | None:intergenic | 35.0% | |
| GGTTCAAACTTCTCAAAAGA+GGG | - | chr5.4:4088654-4088673 | MS.gene22316:intron | 35.0% | |
| GTCCAGTACTTGATACTATA+GGG | - | chr5.4:4091515-4091534 | MS.gene22316:intron | 35.0% | |
| GTGATCATGTTAGTTGTACA+TGG | - | chr5.4:4091845-4091864 | MS.gene22316:CDS | 35.0% | |
| TAGGTGCTTTGCTTTATGTT+CGG | - | chr5.4:4091110-4091129 | MS.gene22316:intron | 35.0% | |
| TATGGTGTTTGTTTAGCTAG+TGG | - | chr5.4:4091317-4091336 | MS.gene22316:CDS | 35.0% | |
| TCTCTAAGCCCAATAAATAC+TGG | - | chr5.4:4088632-4088651 | MS.gene22316:intron | 35.0% | |
| TGCAAGCAAAAAAGCAAGTT+TGG | + | chr5.4:4090875-4090894 | None:intergenic | 35.0% | |
| TGCTTCATATGTGCTTGTTT+GGG | + | chr5.4:4090906-4090925 | None:intergenic | 35.0% | |
| TGGTGTCCAACAGAAAATAA+TGG | - | chr5.4:4091797-4091816 | MS.gene22316:CDS | 35.0% | |
| TGTACAACTAACATGATCAC+TGG | + | chr5.4:4091845-4091864 | None:intergenic | 35.0% | |
| TGTATCTTAGAACTCTCTAG+TGG | - | chr5.4:4089879-4089898 | MS.gene22316:intron | 35.0% | |
| TGTCCAGTACTTGATACTAT+AGG | - | chr5.4:4091514-4091533 | MS.gene22316:intron | 35.0% | |
| TTCCCTATAGTATCAAGTAC+TGG | + | chr5.4:4091520-4091539 | None:intergenic | 35.0% | |
| ! | AAATCACGGCAAATTTGCTT+TGG | - | chr5.4:4090842-4090861 | MS.gene22316:intron | 35.0% |
| ! | GTCTTATTCCACCATACAAT+AGG | - | chr5.4:4089321-4089340 | MS.gene22316:intron | 35.0% |
| ! | TAAAGTATGCGGTGTCAATT+CGG | - | chr5.4:4089213-4089232 | MS.gene22316:intron | 35.0% |
| ! | TCAATTCGGCAAGTAGTTTT+AGG | - | chr5.4:4089227-4089246 | MS.gene22316:intron | 35.0% |
| ! | TGTATTCCACCCAAAACTTT+TGG | - | chr5.4:4090648-4090667 | MS.gene22316:intron | 35.0% |
| ! | TTTCCCTCTTTTGTTCTATC+CGG | - | chr5.4:4090980-4090999 | MS.gene22316:intron | 35.0% |
| !! | CCAAGAAGTACTAACAAATG+GGG | + | chr5.4:4090333-4090352 | None:intergenic | 35.0% |
| !! | CTCTAGGACAATGTACTAAT+GGG | + | chr5.4:4089455-4089474 | None:intergenic | 35.0% |
| !! | GCCAAGAAGTACTAACAAAT+GGG | + | chr5.4:4090334-4090353 | None:intergenic | 35.0% |
| !!! | TGGAGCTTTTGAGTTAAAGT+GGG | + | chr5.4:4090807-4090826 | None:intergenic | 35.0% |
| !!! | TTGGAGCTTTTGAGTTAAAG+TGG | + | chr5.4:4090808-4090827 | None:intergenic | 35.0% |
| AACAATTATCGTGGCTGTTG+AGG | - | chr5.4:4090071-4090090 | MS.gene22316:intron | 40.0% | |
| AACACAATTAAGCTTGGAGG+TGG | - | chr5.4:4088556-4088575 | MS.gene22316:intron | 40.0% | |
| AACTCAAAAGCTCCAATTGC+TGG | - | chr5.4:4090812-4090831 | MS.gene22316:intron | 40.0% | |
| AATAATGGCTGAAAAGCTGC+TGG | - | chr5.4:4091812-4091831 | MS.gene22316:CDS | 40.0% | |
| ACAAAACCACGGTGGTAAAA+AGG | + | chr5.4:4091061-4091080 | None:intergenic | 40.0% | |
| ACAAGCTCGTGACTGTAATT+AGG | - | chr5.4:4089619-4089638 | MS.gene22316:intron | 40.0% | |
| ACAATTATCGTGGCTGTTGA+GGG | - | chr5.4:4090072-4090091 | MS.gene22316:intron | 40.0% | |
| ACCAAACAGGCTAATAGTCT+TGG | + | chr5.4:4090741-4090760 | None:intergenic | 40.0% | |
| AGGTCAATAACTACATCTCC+CGG | + | chr5.4:4088514-4088533 | None:intergenic | 40.0% | |
| AGGTGCTTTGCTTTATGTTC+GGG | - | chr5.4:4091111-4091130 | MS.gene22316:intron | 40.0% | |
| AGTACATTCAGAATGCTCAC+AGG | - | chr5.4:4090477-4090496 | MS.gene22316:intron | 40.0% | |
| ATAGCTCAGGATTCATTCCA+GGG | + | chr5.4:4091150-4091169 | None:intergenic | 40.0% | |
| CAAAAGAAACAAAACCACGG+TGG | + | chr5.4:4091069-4091088 | None:intergenic | 40.0% | |
| CACACCTTTCACAGTAACAA+AGG | + | chr5.4:4088759-4088778 | None:intergenic | 40.0% | |
| CATTTGAAGGAGGAACAAGA+AGG | - | chr5.4:4089820-4089839 | MS.gene22316:intron | 40.0% | |
| CCAGTTCTATCATAGACAAG+AGG | + | chr5.4:4090157-4090176 | None:intergenic | 40.0% | |
| CCATTAGTACATTGTCCTAG+AGG | - | chr5.4:4089453-4089472 | MS.gene22316:intron | 40.0% | |
| CCTCTTGTCTATGATAGAAC+TGG | - | chr5.4:4090154-4090173 | MS.gene22316:intron | 40.0% | |
| CTACCAGTTCTTGCATTTGA+AGG | - | chr5.4:4089807-4089826 | MS.gene22316:intron | 40.0% | |
| CTTGGTCTGAATCATGCATT+TGG | - | chr5.4:4090551-4090570 | MS.gene22316:intron | 40.0% | |
| GACAATGTACTAATGGGACT+TGG | + | chr5.4:4089449-4089468 | None:intergenic | 40.0% | |
| GAGCAGGTTCAAGTATTTCT+TGG | - | chr5.4:4090533-4090552 | MS.gene22316:intron | 40.0% | |
| GATAGTTGTAGATGGAGATG+AGG | + | chr5.4:4091739-4091758 | None:intergenic | 40.0% | |
| GATTATGACCAGGATGATTG+AGG | - | chr5.4:4090412-4090431 | MS.gene22316:intron | 40.0% | |
| GCCAGACTTCATTACAGAAA+TGG | + | chr5.4:4088602-4088621 | None:intergenic | 40.0% | |
| GCCATTTCTGTAATGAAGTC+TGG | - | chr5.4:4088598-4088617 | MS.gene22316:intron | 40.0% | |
| GCTACGATGATAGTTGTAGA+TGG | + | chr5.4:4091747-4091766 | None:intergenic | 40.0% | |
| GGATATAAAAGGACCTGCAT+TGG | - | chr5.4:4089779-4089798 | MS.gene22316:intron | 40.0% | |
| GGGTTCAAACTTCTCAAAAG+AGG | - | chr5.4:4088653-4088672 | MS.gene22316:intron | 40.0% | |
| GGTTATCTCCATATGGGATT+TGG | - | chr5.4:4090581-4090600 | MS.gene22316:CDS | 40.0% | |
| GTAGTCTCATAGACAGTGAT+CGG | + | chr5.4:4091952-4091971 | None:intergenic | 40.0% | |
| TAATTCTTCACGATGCAGGT+AGG | - | chr5.4:4091091-4091110 | MS.gene22316:intron | 40.0% | |
| TACCTGCATCGTGAAGAATT+AGG | + | chr5.4:4091092-4091111 | None:intergenic | 40.0% | |
| TAGCCGGATAGAACAAAAGA+GGG | + | chr5.4:4090986-4091005 | None:intergenic | 40.0% | |
| TAGTCATGGACATGGTAGAT+AGG | + | chr5.4:4088534-4088553 | None:intergenic | 40.0% | |
| TCATATGTGCTTGTTTGGGA+TGG | + | chr5.4:4090902-4090921 | None:intergenic | 40.0% | |
| TCGTGGCTACCTTTAAATCA+TGG | - | chr5.4:4091222-4091241 | MS.gene22316:intron | 40.0% | |
| TGGCTTAAATGGACGTGTTT+GGG | - | chr5.4:4091564-4091583 | MS.gene22316:intron | 40.0% | |
| TTAGCCGGATAGAACAAAAG+AGG | + | chr5.4:4090987-4091006 | None:intergenic | 40.0% | |
| TTGGCTTAAATGGACGTGTT+TGG | - | chr5.4:4091563-4091582 | MS.gene22316:intron | 40.0% | |
| TTTCTGTAATGAAGTCTGGC+AGG | - | chr5.4:4088602-4088621 | MS.gene22316:intron | 40.0% | |
| ! | ACCAAGACTATTAGCCTGTT+TGG | - | chr5.4:4090737-4090756 | MS.gene22316:intron | 40.0% |
| ! | CCACGTTTTCTGTAAAAGCA+CGG | - | chr5.4:4090776-4090795 | MS.gene22316:intron | 40.0% |
| ! | CCCCATTTGTTAGTACTTCT+TGG | - | chr5.4:4090330-4090349 | MS.gene22316:intron | 40.0% |
| ! | CGTGCTTTTACAGAAAACGT+GGG | + | chr5.4:4090778-4090797 | None:intergenic | 40.0% |
| ! | GAGATTGCAGTTGGCTTAAA+TGG | - | chr5.4:4091553-4091572 | MS.gene22316:intron | 40.0% |
| ! | TGTGTTGTTAGTCATGGACA+TGG | + | chr5.4:4088542-4088561 | None:intergenic | 40.0% |
| !! | AGTATCAAGTACTGGACATG+TGG | + | chr5.4:4091512-4091531 | None:intergenic | 40.0% |
| !! | CCTCTAGGACAATGTACTAA+TGG | + | chr5.4:4089456-4089475 | None:intergenic | 40.0% |
| !! | GGCCAAGAAGTACTAACAAA+TGG | + | chr5.4:4090335-4090354 | None:intergenic | 40.0% |
| !! | GTATCAAGTACTGGACATGT+GGG | + | chr5.4:4091511-4091530 | None:intergenic | 40.0% |
| !!! | GTGAATCCAAAAGTTTTGGG+TGG | + | chr5.4:4090657-4090676 | None:intergenic | 40.0% |
| AACAACAACAGGGGAATGAC+AGG | + | chr5.4:4091021-4091040 | None:intergenic | 45.0% | |
| ACTGGTAGAAATGCCAATGC+AGG | + | chr5.4:4089795-4089814 | None:intergenic | 45.0% | |
| AGAGGCAAGATTTCTCAAGC+AGG | + | chr5.4:4090139-4090158 | None:intergenic | 45.0% | |
| AGTGGGAAAGCTGTAGAGTT+TGG | - | chr5.4:4091335-4091354 | MS.gene22316:CDS | 45.0% | |
| ATCTGTGCAGAACTTTCTCG+TGG | - | chr5.4:4089758-4089777 | MS.gene22316:intron | 45.0% | |
| CAAATACCAATGCGTCTGCA+GGG | - | chr5.4:4091920-4091939 | MS.gene22316:intron | 45.0% | |
| CAGGTCAAGTGTTAGTTAGC+CGG | + | chr5.4:4091002-4091021 | None:intergenic | 45.0% | |
| CCAGTTCTTGCATTTGAAGG+AGG | - | chr5.4:4089810-4089829 | MS.gene22316:intron | 45.0% | |
| CCTCCTTCAAATGCAAGAAC+TGG | + | chr5.4:4089813-4089832 | None:intergenic | 45.0% | |
| CTCGTGACTGTAATTAGGAG+TGG | - | chr5.4:4089624-4089643 | MS.gene22316:intron | 45.0% | |
| GATAGCTCAGGATTCATTCC+AGG | + | chr5.4:4091151-4091170 | None:intergenic | 45.0% | |
| GATGATGTAGGCTTGCATTC+TGG | - | chr5.4:4088871-4088890 | MS.gene22316:CDS | 45.0% | |
| GTAGGGCAGAACTAAAAGAC+TGG | + | chr5.4:4089154-4089173 | None:intergenic | 45.0% | |
| TAATGAAGTCTGGCAGGCTT+AGG | - | chr5.4:4088608-4088627 | MS.gene22316:intron | 45.0% | |
| TATGGCACGCTGAAACTACA+AGG | + | chr5.4:4091600-4091619 | None:intergenic | 45.0% | |
| TGCCTAATTCTTCACGATGC+AGG | - | chr5.4:4091087-4091106 | MS.gene22316:intron | 45.0% | |
| ! | AGCTATCATGCACTGATGGT+TGG | - | chr5.4:4091164-4091183 | MS.gene22316:intron | 45.0% |
| ! | AGGTTTCCTTTTTACCACCG+TGG | - | chr5.4:4091052-4091071 | MS.gene22316:intron | 45.0% |
| ! | CCGTGCTTTTACAGAAAACG+TGG | + | chr5.4:4090779-4090798 | None:intergenic | 45.0% |
| ! | TAAGCCTAGAGTACTCCTCT+AGG | + | chr5.4:4089471-4089490 | None:intergenic | 45.0% |
| !! | GAGTTTGGTGCCCTAAAAGA+AGG | - | chr5.4:4091350-4091369 | MS.gene22316:CDS | 45.0% |
| !! | TTGTCCTAGAGGAGTACTCT+AGG | - | chr5.4:4089464-4089483 | MS.gene22316:intron | 45.0% |
| !!! | TATATAATATTATCTTTTTA+TGG | - | chr5.4:4089924-4089943 | MS.gene22316:intron | 5.0% |
| AACCTGCAACGTGCGTTCTT+AGG | + | chr5.4:4090623-4090642 | None:intergenic | 50.0% | |
| ACAGTATGTGCCACATGCAC+AGG | - | chr5.4:4089047-4089066 | MS.gene22316:CDS | 50.0% | |
| ACTAGTGACGTATGTGGAGC+AGG | - | chr5.4:4090517-4090536 | MS.gene22316:intron | 50.0% | |
| AGAACGGAATCCTGTGCATG+TGG | + | chr5.4:4089060-4089079 | None:intergenic | 50.0% | |
| CATGCACAGGATTCCGTTCT+TGG | - | chr5.4:4089060-4089079 | MS.gene22316:CDS | 50.0% | |
| CCAAATACCAATGCGTCTGC+AGG | - | chr5.4:4091919-4091938 | MS.gene22316:intron | 50.0% | |
| CCATCAGTGCATGATAGCTC+AGG | + | chr5.4:4091163-4091182 | None:intergenic | 50.0% | |
| CCTGAGCTATCATGCACTGA+TGG | - | chr5.4:4091160-4091179 | MS.gene22316:intron | 50.0% | |
| CTCTCGTTCGAGATTGCAGT+TGG | - | chr5.4:4091544-4091563 | MS.gene22316:intron | 50.0% | |
| CTTGGGTTTCAGAAAGTCCG+AGG | + | chr5.4:4089431-4089450 | None:intergenic | 50.0% | |
| GACCAGGATGATTGAGGTTG+AGG | - | chr5.4:4090418-4090437 | MS.gene22316:intron | 50.0% | |
| TGCCTCAACCTCAATCATCC+TGG | + | chr5.4:4090423-4090442 | None:intergenic | 50.0% | |
| TTCCTAAGAACGCACGTTGC+AGG | - | chr5.4:4090618-4090637 | MS.gene22316:CDS | 50.0% | |
| ! | CCTGCAGACGCATTGGTATT+TGG | + | chr5.4:4091922-4091941 | None:intergenic | 50.0% |
| CGGGTCGTTAAAGCAAACCC+TGG | - | chr5.4:4091130-4091149 | MS.gene22316:intron | 55.0% | |
| GGCTGAAAAGCTGCTGGAGA+GGG | - | chr5.4:4091818-4091837 | MS.gene22316:CDS | 55.0% | |
| TGGCTGAAAAGCTGCTGGAG+AGG | - | chr5.4:4091817-4091836 | MS.gene22316:CDS | 55.0% | |
| GCTTGGAGGTGGTCTACGTC+AGG | - | chr5.4:4088567-4088586 | MS.gene22316:intron | 60.0% | |
| GGCTGTTGAGGGATGTGCGA+AGG | - | chr5.4:4090083-4090102 | MS.gene22316:intron | 60.0% | |
| CGATCGCCCTGCAGACGCAT+TGG | + | chr5.4:4091929-4091948 | None:intergenic | 65.0% | |
| GGTGTGTGTGCGTGTGCGCG+CGG | - | chr5.4:4088773-4088792 | MS.gene22316:intron | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.4 | gene | 4088403 | 4092018 | 4088403 | ID=MS.gene22316 |
| chr5.4 | mRNA | 4088403 | 4092018 | 4088403 | ID=MS.gene22316.t1;Parent=MS.gene22316 |
| chr5.4 | exon | 4091980 | 4092018 | 4091980 | ID=MS.gene22316.t1.exon1;Parent=MS.gene22316.t1 |
| chr5.4 | CDS | 4091980 | 4092018 | 4091980 | ID=cds.MS.gene22316.t1;Parent=MS.gene22316.t1 |
| chr5.4 | exon | 4091746 | 4091913 | 4091746 | ID=MS.gene22316.t1.exon2;Parent=MS.gene22316.t1 |
| chr5.4 | CDS | 4091746 | 4091913 | 4091746 | ID=cds.MS.gene22316.t1;Parent=MS.gene22316.t1 |
| chr5.4 | exon | 4091314 | 4091370 | 4091314 | ID=MS.gene22316.t1.exon3;Parent=MS.gene22316.t1 |
| chr5.4 | CDS | 4091314 | 4091370 | 4091314 | ID=cds.MS.gene22316.t1;Parent=MS.gene22316.t1 |
| chr5.4 | exon | 4090561 | 4090653 | 4090561 | ID=MS.gene22316.t1.exon4;Parent=MS.gene22316.t1 |
| chr5.4 | CDS | 4090561 | 4090653 | 4090561 | ID=cds.MS.gene22316.t1;Parent=MS.gene22316.t1 |
| chr5.4 | exon | 4089240 | 4089312 | 4089240 | ID=MS.gene22316.t1.exon5;Parent=MS.gene22316.t1 |
| chr5.4 | CDS | 4089240 | 4089312 | 4089240 | ID=cds.MS.gene22316.t1;Parent=MS.gene22316.t1 |
| chr5.4 | exon | 4089013 | 4089088 | 4089013 | ID=MS.gene22316.t1.exon6;Parent=MS.gene22316.t1 |
| chr5.4 | CDS | 4089013 | 4089088 | 4089013 | ID=cds.MS.gene22316.t1;Parent=MS.gene22316.t1 |
| chr5.4 | exon | 4088836 | 4088926 | 4088836 | ID=MS.gene22316.t1.exon7;Parent=MS.gene22316.t1 |
| chr5.4 | CDS | 4088836 | 4088926 | 4088836 | ID=cds.MS.gene22316.t1;Parent=MS.gene22316.t1 |
| chr5.4 | exon | 4088403 | 4088480 | 4088403 | ID=MS.gene22316.t1.exon8;Parent=MS.gene22316.t1 |
| chr5.4 | CDS | 4088403 | 4088480 | 4088403 | ID=cds.MS.gene22316.t1;Parent=MS.gene22316.t1 |
| Gene Sequence |
| Protein sequence |
