Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene63030.t1 | XP_013466476.1 | 95.6 | 478 | 21 | 0 | 1 | 478 | 1 | 478 | 5.40E-258 | 899.8 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene63030.t1 | Q70DU8 | 72.3 | 470 | 130 | 0 | 8 | 477 | 4 | 473 | 6.1e-202 | 704.9 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene63030.t1 | A0A072VGG1 | 95.6 | 478 | 21 | 0 | 1 | 478 | 1 | 478 | 3.9e-258 | 899.8 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049254 | MS.gene63030 | 0.831724 | 1.42E-55 | -1.69E-46 |
| MS.gene049404 | MS.gene63030 | 0.802682 | 5.00E-49 | -1.69E-46 |
| MS.gene049435 | MS.gene63030 | 0.810954 | 8.91E-51 | -1.69E-46 |
| MS.gene050026 | MS.gene63030 | 0.829414 | 5.22E-55 | -1.69E-46 |
| MS.gene050029 | MS.gene63030 | 0.801634 | 8.21E-49 | -1.69E-46 |
| MS.gene050073 | MS.gene63030 | 0.815116 | 1.09E-51 | -1.69E-46 |
| MS.gene050433 | MS.gene63030 | 0.802656 | 5.06E-49 | -1.69E-46 |
| MS.gene050442 | MS.gene63030 | 0.80409 | 2.55E-49 | -1.69E-46 |
| MS.gene050559 | MS.gene63030 | 0.80659 | 7.64E-50 | -1.69E-46 |
| MS.gene050561 | MS.gene63030 | 0.818 | 2.46E-52 | -1.69E-46 |
| MS.gene050562 | MS.gene63030 | 0.807336 | 5.31E-50 | -1.69E-46 |
| MS.gene050750 | MS.gene63030 | 0.80179 | 7.62E-49 | -1.69E-46 |
| MS.gene050759 | MS.gene63030 | 0.806993 | 6.28E-50 | -1.69E-46 |
| MS.gene050780 | MS.gene63030 | 0.802368 | 5.80E-49 | -1.69E-46 |
| MS.gene051181 | MS.gene63030 | 0.803922 | 2.77E-49 | -1.69E-46 |
| MS.gene051198 | MS.gene63030 | 0.814685 | 1.36E-51 | -1.69E-46 |
| MS.gene051279 | MS.gene63030 | 0.825107 | 5.61E-54 | -1.69E-46 |
| MS.gene051744 | MS.gene63030 | 0.834729 | 2.53E-56 | -1.69E-46 |
| MS.gene051859 | MS.gene63030 | 0.800579 | 1.35E-48 | -1.69E-46 |
| MS.gene052037 | MS.gene63030 | 0.837246 | 5.82E-57 | -1.69E-46 |
| MS.gene052190 | MS.gene63030 | 0.802769 | 4.79E-49 | -1.69E-46 |
| MS.gene052333 | MS.gene63030 | 0.823118 | 1.65E-53 | -1.69E-46 |
| MS.gene052488 | MS.gene63030 | 0.831308 | 1.80E-55 | -1.69E-46 |
| MS.gene052582 | MS.gene63030 | 0.806073 | 9.82E-50 | -1.69E-46 |
| MS.gene052584 | MS.gene63030 | 0.812885 | 3.38E-51 | -1.69E-46 |
| MS.gene053166 | MS.gene63030 | 0.801253 | 9.82E-49 | -1.69E-46 |
| MS.gene053201 | MS.gene63030 | 0.821102 | 4.83E-53 | -1.69E-46 |
| MS.gene05415 | MS.gene63030 | 0.830888 | 2.28E-55 | -1.69E-46 |
| MS.gene054291 | MS.gene63030 | -0.80738 | 5.20E-50 | -1.69E-46 |
| MS.gene054468 | MS.gene63030 | 0.812593 | 3.92E-51 | -1.69E-46 |
| MS.gene054559 | MS.gene63030 | 0.813417 | 2.59E-51 | -1.69E-46 |
| MS.gene054576 | MS.gene63030 | 0.816476 | 5.42E-52 | -1.69E-46 |
| MS.gene054651 | MS.gene63030 | 0.822925 | 1.82E-53 | -1.69E-46 |
| MS.gene055227 | MS.gene63030 | 0.806656 | 7.40E-50 | -1.69E-46 |
| MS.gene055778 | MS.gene63030 | 0.808095 | 3.66E-50 | -1.69E-46 |
| MS.gene055818 | MS.gene63030 | 0.816306 | 5.92E-52 | -1.69E-46 |
| MS.gene056050 | MS.gene63030 | 0.822107 | 2.83E-53 | -1.69E-46 |
| MS.gene056173 | MS.gene63030 | 0.843552 | 1.31E-58 | -1.69E-46 |
| MS.gene056174 | MS.gene63030 | 0.826134 | 3.20E-54 | -1.69E-46 |
| MS.gene056366 | MS.gene63030 | 0.819823 | 9.48E-53 | -1.69E-46 |
| MS.gene056506 | MS.gene63030 | 0.811031 | 8.58E-51 | -1.69E-46 |
| MS.gene057012 | MS.gene63030 | 0.807133 | 5.87E-50 | -1.69E-46 |
| MS.gene057414 | MS.gene63030 | 0.801968 | 7.01E-49 | -1.69E-46 |
| MS.gene057444 | MS.gene63030 | 0.806293 | 8.83E-50 | -1.69E-46 |
| MS.gene057869 | MS.gene63030 | 0.826891 | 2.11E-54 | -1.69E-46 |
| MS.gene058010 | MS.gene63030 | 0.804201 | 2.42E-49 | -1.69E-46 |
| MS.gene058037 | MS.gene63030 | 0.801191 | 1.01E-48 | -1.69E-46 |
| MS.gene058294 | MS.gene63030 | 0.807256 | 5.52E-50 | -1.69E-46 |
| MS.gene058625 | MS.gene63030 | 0.807725 | 4.39E-50 | -1.69E-46 |
| MS.gene058979 | MS.gene63030 | 0.830203 | 3.35E-55 | -1.69E-46 |
| MS.gene059272 | MS.gene63030 | 0.814757 | 1.31E-51 | -1.69E-46 |
| MS.gene059550 | MS.gene63030 | 0.800469 | 1.42E-48 | -1.69E-46 |
| MS.gene060011 | MS.gene63030 | 0.827383 | 1.61E-54 | -1.69E-46 |
| MS.gene060310 | MS.gene63030 | 0.801088 | 1.06E-48 | -1.69E-46 |
| MS.gene060373 | MS.gene63030 | 0.818538 | 1.86E-52 | -1.69E-46 |
| MS.gene060919 | MS.gene63030 | 0.808247 | 3.40E-50 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene63030 | MS.gene89630 | PPI |
| MS.gene63030 | MS.gene012075 | PPI |
| MS.gene63030 | MS.gene64463 | PPI |
| MS.gene63030 | MS.gene70176 | PPI |
| MS.gene63030 | MS.gene035576 | PPI |
| MS.gene63030 | MS.gene037163 | PPI |
| MS.gene63030 | MS.gene016051 | PPI |
| MS.gene63030 | MS.gene33139 | PPI |
| MS.gene63030 | MS.gene025244 | PPI |
| MS.gene63030 | MS.gene042286 | PPI |
| MS.gene63030 | MS.gene012582 | PPI |
| MS.gene63030 | MS.gene057392 | PPI |
| MS.gene63030 | MS.gene030576 | PPI |
| MS.gene63030 | MS.gene62087 | PPI |
| MS.gene63030 | MS.gene76463 | PPI |
| MS.gene63030 | MS.gene49712 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene63030.t1 | MTR_1g029840 | 95.607 | 478 | 21 | 0 | 1 | 478 | 1 | 478 | 0.0 | 941 |
| MS.gene63030.t1 | MTR_1g029840 | 88.075 | 478 | 57 | 0 | 1 | 478 | 1 | 478 | 0.0 | 866 |
| MS.gene63030.t1 | MTR_3g088150 | 78.419 | 468 | 101 | 0 | 8 | 475 | 10 | 477 | 0.0 | 787 |
| MS.gene63030.t1 | MTR_8g094600 | 66.879 | 471 | 156 | 0 | 8 | 478 | 61 | 531 | 0.0 | 685 |
| MS.gene63030.t1 | MTR_8g076480 | 51.096 | 456 | 223 | 0 | 15 | 470 | 8 | 463 | 2.15e-173 | 496 |
| MS.gene63030.t1 | MTR_2g097950 | 48.380 | 463 | 236 | 1 | 11 | 470 | 15 | 477 | 1.49e-158 | 459 |
| MS.gene63030.t1 | MTR_4g065040 | 52.643 | 454 | 212 | 1 | 20 | 470 | 9 | 462 | 8.27e-151 | 439 |
| MS.gene63030.t1 | MTR_2g097950 | 45.870 | 460 | 217 | 2 | 11 | 470 | 15 | 442 | 2.27e-141 | 414 |
| MS.gene63030.t1 | MTR_1222s0010 | 36.436 | 376 | 227 | 5 | 24 | 395 | 13 | 380 | 1.31e-77 | 257 |
| MS.gene63030.t1 | MTR_1314s0010 | 36.982 | 338 | 203 | 4 | 116 | 445 | 1 | 336 | 1.51e-74 | 238 |
| MS.gene63030.t1 | MTR_2g034160 | 24.894 | 470 | 321 | 10 | 14 | 466 | 86 | 540 | 8.81e-40 | 151 |
| MS.gene63030.t1 | MTR_4g106510 | 29.640 | 361 | 239 | 8 | 95 | 445 | 130 | 485 | 5.42e-36 | 139 |
| MS.gene63030.t1 | MTR_3g078550 | 29.917 | 361 | 238 | 7 | 95 | 445 | 100 | 455 | 1.12e-35 | 138 |
| MS.gene63030.t1 | MTR_3g078550 | 29.917 | 361 | 238 | 7 | 95 | 445 | 130 | 485 | 2.00e-35 | 138 |
| MS.gene63030.t1 | MTR_4g107040 | 28.261 | 460 | 282 | 15 | 12 | 446 | 99 | 535 | 8.63e-35 | 137 |
| MS.gene63030.t1 | MTR_2g067660 | 26.087 | 414 | 287 | 10 | 42 | 446 | 112 | 515 | 2.04e-33 | 132 |
| MS.gene63030.t1 | MTR_3g078490 | 29.178 | 353 | 233 | 8 | 103 | 445 | 170 | 515 | 2.37e-33 | 132 |
| MS.gene63030.t1 | MTR_8g064170 | 28.604 | 444 | 297 | 12 | 14 | 446 | 98 | 532 | 6.09e-33 | 131 |
| MS.gene63030.t1 | MTR_3g078170 | 28.285 | 449 | 296 | 12 | 12 | 446 | 97 | 533 | 1.82e-31 | 127 |
| MS.gene63030.t1 | MTR_8g083530 | 27.051 | 451 | 295 | 16 | 14 | 446 | 60 | 494 | 1.26e-29 | 121 |
| MS.gene63030.t1 | MTR_6g086300 | 26.872 | 454 | 292 | 15 | 14 | 446 | 59 | 493 | 1.47e-26 | 112 |
| MS.gene63030.t1 | MTR_6g086300 | 26.872 | 454 | 292 | 15 | 14 | 446 | 59 | 493 | 1.47e-26 | 112 |
| MS.gene63030.t1 | MTR_6g086340 | 27.551 | 392 | 250 | 15 | 77 | 445 | 110 | 490 | 1.95e-24 | 106 |
| MS.gene63030.t1 | MTR_8g064170 | 26.757 | 441 | 277 | 14 | 14 | 446 | 98 | 500 | 1.47e-23 | 103 |
| MS.gene63030.t1 | MTR_4g131180 | 24.885 | 434 | 291 | 11 | 17 | 429 | 49 | 468 | 2.41e-23 | 103 |
| MS.gene63030.t1 | MTR_3g078170 | 27.548 | 363 | 239 | 11 | 12 | 360 | 97 | 449 | 3.71e-21 | 96.3 |
| MS.gene63030.t1 | MTR_2g009750 | 26.823 | 384 | 249 | 14 | 78 | 445 | 118 | 485 | 9.27e-21 | 95.5 |
| MS.gene63030.t1 | MTR_2g009750 | 26.823 | 384 | 249 | 14 | 78 | 445 | 119 | 486 | 1.00e-20 | 95.5 |
| MS.gene63030.t1 | MTR_4g020720 | 42.308 | 130 | 66 | 4 | 183 | 306 | 116 | 242 | 1.28e-20 | 92.0 |
| MS.gene63030.t1 | MTR_4g131180 | 24.528 | 424 | 285 | 11 | 17 | 419 | 49 | 458 | 3.13e-20 | 93.6 |
| MS.gene63030.t1 | MTR_2g009750 | 26.562 | 384 | 251 | 14 | 78 | 445 | 119 | 487 | 3.65e-20 | 93.6 |
| MS.gene63030.t1 | MTR_1g014320 | 24.242 | 429 | 300 | 10 | 17 | 429 | 49 | 468 | 5.04e-20 | 93.2 |
| MS.gene63030.t1 | MTR_8g083520 | 24.183 | 459 | 265 | 17 | 14 | 446 | 51 | 452 | 8.25e-19 | 89.4 |
| MS.gene63030.t1 | MTR_8g083520 | 24.873 | 394 | 231 | 14 | 75 | 446 | 22 | 372 | 1.09e-18 | 88.2 |
| MS.gene63030.t1 | MTR_4g093170 | 25.501 | 349 | 236 | 10 | 113 | 445 | 174 | 514 | 2.21e-18 | 88.2 |
| MS.gene63030.t1 | MTR_3g078170 | 26.744 | 344 | 228 | 11 | 12 | 341 | 97 | 430 | 8.32e-17 | 82.8 |
| MS.gene63030.t1 | MTR_2g042330 | 23.615 | 343 | 244 | 8 | 113 | 442 | 152 | 489 | 1.05e-16 | 82.8 |
| MS.gene63030.t1 | MTR_3g078170 | 26.744 | 344 | 228 | 11 | 12 | 341 | 97 | 430 | 1.11e-16 | 82.4 |
| MS.gene63030.t1 | MTR_3g078490 | 33.152 | 184 | 113 | 5 | 99 | 277 | 136 | 314 | 2.44e-16 | 80.9 |
| MS.gene63030.t1 | MTR_4g020710 | 52.941 | 68 | 32 | 0 | 301 | 368 | 16 | 83 | 4.44e-16 | 75.5 |
| MS.gene63030.t1 | MTR_8g083530 | 28.627 | 255 | 165 | 9 | 14 | 259 | 60 | 306 | 2.44e-14 | 74.7 |
| MS.gene63030.t1 | MTR_1399s0020 | 29.688 | 192 | 128 | 5 | 252 | 440 | 145 | 332 | 5.22e-13 | 70.5 |
| MS.gene63030.t1 | MTR_1690s0010 | 28.155 | 206 | 133 | 8 | 116 | 312 | 146 | 345 | 5.28e-11 | 64.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene63030.t1 | AT1G44170 | 72.961 | 466 | 126 | 0 | 8 | 473 | 4 | 469 | 0.0 | 730 |
| MS.gene63030.t1 | AT1G44170 | 72.961 | 466 | 126 | 0 | 8 | 473 | 4 | 469 | 0.0 | 730 |
| MS.gene63030.t1 | AT1G44170 | 75.879 | 398 | 96 | 0 | 76 | 473 | 9 | 406 | 0.0 | 660 |
| MS.gene63030.t1 | AT4G34240 | 67.308 | 468 | 153 | 0 | 11 | 478 | 70 | 537 | 0.0 | 655 |
| MS.gene63030.t1 | AT4G34240 | 67.308 | 468 | 153 | 0 | 11 | 478 | 55 | 522 | 0.0 | 655 |
| MS.gene63030.t1 | AT4G34240 | 70.992 | 393 | 114 | 0 | 86 | 478 | 3 | 395 | 0.0 | 579 |
| MS.gene63030.t1 | AT4G36250 | 48.261 | 460 | 235 | 1 | 14 | 470 | 6 | 465 | 1.02e-166 | 479 |
| MS.gene63030.t1 | AT4G34240 | 68.224 | 321 | 102 | 0 | 11 | 331 | 70 | 390 | 3.92e-155 | 446 |
| MS.gene63030.t1 | AT3G66658 | 27.064 | 436 | 292 | 8 | 34 | 451 | 106 | 533 | 1.71e-42 | 159 |
| MS.gene63030.t1 | AT3G66658 | 27.064 | 436 | 292 | 8 | 34 | 451 | 106 | 533 | 3.08e-42 | 159 |
| MS.gene63030.t1 | AT1G74920 | 29.781 | 366 | 241 | 9 | 95 | 449 | 125 | 485 | 9.98e-40 | 150 |
| MS.gene63030.t1 | AT1G74920 | 29.781 | 366 | 241 | 9 | 95 | 449 | 130 | 490 | 1.63e-39 | 149 |
| MS.gene63030.t1 | AT1G23800 | 28.764 | 445 | 299 | 11 | 12 | 446 | 89 | 525 | 3.18e-38 | 146 |
| MS.gene63030.t1 | AT1G79440 | 30.117 | 342 | 228 | 9 | 112 | 446 | 184 | 521 | 6.06e-35 | 137 |
| MS.gene63030.t1 | AT3G48170 | 28.488 | 344 | 231 | 7 | 112 | 445 | 147 | 485 | 7.89e-35 | 136 |
| MS.gene63030.t1 | AT3G48000 | 28.097 | 452 | 293 | 14 | 12 | 446 | 93 | 529 | 4.18e-33 | 132 |
| MS.gene63030.t1 | AT3G24503 | 27.114 | 343 | 236 | 9 | 113 | 446 | 155 | 492 | 5.60e-27 | 114 |
| MS.gene63030.t1 | AT2G24270 | 25.349 | 430 | 294 | 13 | 14 | 429 | 52 | 468 | 7.40e-21 | 95.9 |
| MS.gene63030.t1 | AT2G24270 | 25.349 | 430 | 294 | 13 | 14 | 429 | 52 | 468 | 7.40e-21 | 95.9 |
| MS.gene63030.t1 | AT2G24270 | 25.349 | 430 | 294 | 13 | 14 | 429 | 92 | 508 | 8.02e-21 | 95.9 |
| MS.gene63030.t1 | AT2G24270 | 25.349 | 430 | 294 | 13 | 14 | 429 | 52 | 468 | 8.07e-21 | 95.5 |
| MS.gene63030.t1 | AT1G54100 | 22.714 | 339 | 246 | 7 | 116 | 442 | 154 | 488 | 5.02e-20 | 93.2 |
| MS.gene63030.t1 | AT1G54100 | 22.714 | 339 | 246 | 7 | 116 | 442 | 154 | 488 | 5.02e-20 | 93.2 |
| MS.gene63030.t1 | AT2G14170 | 25.362 | 414 | 273 | 16 | 50 | 445 | 82 | 477 | 1.38e-18 | 89.0 |
| MS.gene63030.t1 | AT2G14170 | 25.362 | 414 | 273 | 16 | 50 | 445 | 191 | 586 | 2.24e-18 | 88.6 |
| MS.gene63030.t1 | AT1G23800 | 29.804 | 255 | 166 | 7 | 12 | 259 | 89 | 337 | 2.28e-18 | 87.4 |
| MS.gene63030.t1 | AT2G14170 | 25.469 | 373 | 245 | 14 | 50 | 406 | 191 | 546 | 8.32e-17 | 83.6 |
Find 83 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTGGATGATGACAAAGTTTC+TGG | 0.156174 | 1.2:-15620091 | MS.gene63030:CDS |
| TTCTCAGTTGAAGGCACTTC+TGG | 0.189731 | 1.2:-15629411 | MS.gene63030:CDS |
| CGATCGCTTGATAAAGCTTT+TGG | 0.222465 | 1.2:-15620110 | MS.gene63030:CDS |
| TTATCACTTGATCCAGTAAT+TGG | 0.245135 | 1.2:-15621218 | MS.gene63030:CDS |
| TGATTCAAATATTAACTTAC+AGG | 0.261532 | 1.2:-15620640 | MS.gene63030:intron |
| GCAATTCATACTTTGCCTTT+TGG | 0.268675 | 1.2:-15618830 | MS.gene63030:CDS |
| TTGAGAATAACGTTTGATTC+TGG | 0.302281 | 1.2:-15629461 | MS.gene63030:CDS |
| GCTGCAATAGCTCCAATTAC+TGG | 0.309379 | 1.2:+15621206 | None:intergenic |
| TTTGTTGTTATGATATAATC+TGG | 0.316109 | 1.2:+15620328 | None:intergenic |
| GATTAGCCCTACTGTTCTAT+TGG | 0.328993 | 1.2:-15619921 | MS.gene63030:CDS |
| TCGTTGCTGGCAAAACTGTT+AGG | 0.339610 | 1.2:-15621134 | MS.gene63030:CDS |
| AGCTTTGATGTGATAAATTC+AGG | 0.353189 | 1.2:-15619534 | MS.gene63030:CDS |
| GACTGTTTCTGCTGGTGGTT+TGG | 0.353589 | 1.2:-15619448 | MS.gene63030:CDS |
| CATCAATCTCATCTTTGTAT+TGG | 0.356661 | 1.2:+15618682 | None:intergenic |
| TCCAGCCACATCATCGTTGC+TGG | 0.362338 | 1.2:-15621147 | MS.gene63030:CDS |
| GTTTCTGGTAAGATTGTTCA+TGG | 0.366193 | 1.2:-15620076 | MS.gene63030:CDS |
| CCTCCAAGCTCCAGCACAAC+TGG | 0.367836 | 1.2:+15620681 | None:intergenic |
| CTCATCTTTGTATTGGTGTA+TGG | 0.403429 | 1.2:+15618689 | None:intergenic |
| ATATTTGAATCAACAACAAC+TGG | 0.414978 | 1.2:+15620651 | None:intergenic |
| ACACCAGTTGTGCTGGAGCT+TGG | 0.416382 | 1.2:-15620684 | MS.gene63030:CDS |
| CGTTGCTGGCAAAACTGTTA+GGG | 0.425700 | 1.2:-15621133 | MS.gene63030:CDS |
| CTTAATTCGTACCGTGATGA+TGG | 0.427177 | 1.2:+15619844 | None:intergenic |
| ATAATGAGCGAAGAGATATT+TGG | 0.444128 | 1.2:-15619878 | MS.gene63030:CDS |
| ATGGAAAGTTTCTCAGTTGA+AGG | 0.449116 | 1.2:-15629420 | MS.gene63030:CDS |
| TTTGTTAAGACTGTTTCTGC+TGG | 0.453254 | 1.2:-15619456 | MS.gene63030:CDS |
| GATTGTTCATGGAGGTGAAA+AGG | 0.454910 | 1.2:-15620065 | MS.gene63030:CDS |
| GATACTATTTCAGCTGAAGA+AGG | 0.460660 | 1.2:+15621606 | None:intergenic |
| GCATTGGATGGCTCCGGAAA+AGG | 0.463175 | 1.2:-15621752 | MS.gene63030:intron |
| ATTGCAAGGTGGCAACTAGA+AGG | 0.464455 | 1.2:-15620399 | MS.gene63030:intron |
| GGAGTAGGTGAGAGTGGAGT+GGG | 0.469025 | 1.2:-15618806 | MS.gene63030:CDS |
| CTGTATTACTGCAACAAAAG+TGG | 0.474056 | 1.2:-15621055 | MS.gene63030:CDS |
| ATATATGCAGCAAGAGGCTT+CGG | 0.476234 | 1.2:+15619510 | None:intergenic |
| GCACCTTACACCAGTTGTGC+TGG | 0.485174 | 1.2:-15620691 | MS.gene63030:CDS |
| ATTGAGTACCTCTTGGATGA+AGG | 0.488247 | 1.2:+15629316 | None:intergenic |
| GTTAAGACTGTTTCTGCTGG+TGG | 0.490673 | 1.2:-15619453 | MS.gene63030:CDS |
| CTCATCTATAAGAGTTGTTG+AGG | 0.493781 | 1.2:-15621096 | MS.gene63030:CDS |
| CCAGTTGTGCTGGAGCTTGG+AGG | 0.497518 | 1.2:-15620681 | MS.gene63030:CDS |
| CACTCAAGGAATTGAAGCAT+TGG | 0.498600 | 1.2:-15621768 | MS.gene63030:CDS |
| GAAGGATAATCGCTGGAAAG+TGG | 0.505649 | 1.2:-15620381 | MS.gene63030:CDS |
| CTCATGTAAAACTGCACTCA+AGG | 0.507865 | 1.2:-15621782 | MS.gene63030:CDS |
| GAGATTGATGAAGGCTCTCA+TGG | 0.510072 | 1.2:-15618669 | MS.gene63030:CDS |
| GCTCCAGCACAACTGGTGTA+AGG | 0.510660 | 1.2:+15620688 | None:intergenic |
| GGAAAGTGGGGTTGCAACAA+TGG | 0.510938 | 1.2:-15620367 | MS.gene63030:CDS |
| TACAAAGATGAGATTGATGA+AGG | 0.513208 | 1.2:-15618678 | MS.gene63030:CDS |
| GTAATTGGAGCTATTGCAGC+TGG | 0.513650 | 1.2:-15621203 | MS.gene63030:CDS |
| AAGAGTGGCACGCATTGTTA+TGG | 0.524412 | 1.2:-15620727 | MS.gene63030:CDS |
| AAGGATAATCGCTGGAAAGT+GGG | 0.525366 | 1.2:-15620380 | MS.gene63030:CDS |
| ATTGAAGCATTGGATGGCTC+CGG | 0.525858 | 1.2:-15621758 | MS.gene63030:CDS |
| AAAAGACTATGCTCCTAAGT+TGG | 0.527792 | 1.2:-15620308 | MS.gene63030:intron |
| ATGAAGGCTCTCATGGGTGG+TGG | 0.534832 | 1.2:-15618662 | MS.gene63030:CDS |
| GCCAGCAACGATGATGTGGC+TGG | 0.536814 | 1.2:+15621146 | None:intergenic |
| TTTGGAGGAGTAGGTGAGAG+TGG | 0.537231 | 1.2:-15618812 | MS.gene63030:CDS |
| GGGACATCCAATAGAACAGT+AGG | 0.538615 | 1.2:+15619914 | None:intergenic |
| CTCTCACCTACTCCTCCAAA+AGG | 0.540508 | 1.2:+15618815 | None:intergenic |
| ATCTTTGTATTGGTGTATGG+TGG | 0.551950 | 1.2:+15618692 | None:intergenic |
| TCATCTATAAGAGTTGTTGA+GGG | 0.559074 | 1.2:-15621095 | MS.gene63030:CDS |
| AGGAGTAGGTGAGAGTGGAG+TGG | 0.559793 | 1.2:-15618807 | MS.gene63030:CDS |
| TGTATTACTGCAACAAAAGT+GGG | 0.565567 | 1.2:-15621054 | MS.gene63030:CDS |
| GCAACTAGAAGGATAATCGC+TGG | 0.565895 | 1.2:-15620388 | MS.gene63030:CDS |
| GTAAATATATATGCAGCAAG+AGG | 0.571237 | 1.2:+15619504 | None:intergenic |
| TTAATTCGTACCGTGATGAT+GGG | 0.573561 | 1.2:+15619845 | None:intergenic |
| GTAAGACTCGAAGCTACGAA+TGG | 0.580175 | 1.2:-15629439 | MS.gene63030:CDS |
| ACCGTGATGATGGGAAGTAA+TGG | 0.581585 | 1.2:+15619854 | None:intergenic |
| CAAGGAATTGAAGCATTGGA+TGG | 0.593249 | 1.2:-15621764 | MS.gene63030:CDS |
| AAAACTGTTAGGGGAATACA+TGG | 0.600533 | 1.2:-15621123 | MS.gene63030:CDS |
| AGGATAATCGCTGGAAAGTG+GGG | 0.609873 | 1.2:-15620379 | MS.gene63030:CDS |
| GTGGCTGGAGAAATTTCTGA+TGG | 0.612827 | 1.2:+15621161 | None:intergenic |
| TATTGCAGCTGGTAATGCTG+TGG | 0.623724 | 1.2:-15621192 | MS.gene63030:CDS |
| GTTGCTGGCAAAACTGTTAG+GGG | 0.625264 | 1.2:-15621132 | MS.gene63030:CDS |
| TCCATTACTTCCCATCATCA+CGG | 0.627032 | 1.2:-15619855 | MS.gene63030:intron |
| AGCTGAATCCTTCATCCAAG+AGG | 0.631889 | 1.2:-15629324 | MS.gene63030:intron |
| TACAAACGACAAGAAGCTCA+AGG | 0.637163 | 1.2:-15619484 | MS.gene63030:CDS |
| GAAATAGTATCTGAACCACT+TGG | 0.643478 | 1.2:-15621594 | MS.gene63030:CDS |
| AGTGGAGTGGGTGCATACCA+TGG | 0.646385 | 1.2:-15618794 | MS.gene63030:CDS |
| GGACATCCAATAGAACAGTA+GGG | 0.647357 | 1.2:+15619915 | None:intergenic |
| ATGATCAACACAACTCCAAG+TGG | 0.650557 | 1.2:+15621579 | None:intergenic |
| GCTTTATCAAGCGATCGAAG+TGG | 0.653845 | 1.2:+15620116 | None:intergenic |
| TTGTGTTGATCATCTCTGCA+TGG | 0.653993 | 1.2:-15621569 | MS.gene63030:CDS |
| AGATTGATGAAGGCTCTCAT+GGG | 0.665748 | 1.2:-15618668 | MS.gene63030:CDS |
| CTCATTATCAGAGAATCACG+CGG | 0.673973 | 1.2:+15619893 | None:intergenic |
| TTGATGAAGGCTCTCATGGG+TGG | 0.678752 | 1.2:-15618665 | MS.gene63030:CDS |
| TCTGGTAAGATTGTTCATGG+AGG | 0.703693 | 1.2:-15620073 | MS.gene63030:CDS |
| TCATTATCAGAGAATCACGC+GGG | 0.717383 | 1.2:+15619894 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.2 | gene | 15618655 | 15629549 | 15618655 | ID=MS.gene63030 |
| chr1.2 | mRNA | 15618655 | 15629549 | 15618655 | ID=MS.gene63030.t1;Parent=MS.gene63030 |
| chr1.2 | exon | 15629325 | 15629549 | 15629325 | ID=MS.gene63030.t1.exon1;Parent=MS.gene63030.t1 |
| chr1.2 | CDS | 15629325 | 15629549 | 15629325 | ID=cds.MS.gene63030.t1;Parent=MS.gene63030.t1 |
| chr1.2 | exon | 15621753 | 15621821 | 15621753 | ID=MS.gene63030.t1.exon2;Parent=MS.gene63030.t1 |
| chr1.2 | CDS | 15621753 | 15621821 | 15621753 | ID=cds.MS.gene63030.t1;Parent=MS.gene63030.t1 |
| chr1.2 | exon | 15621556 | 15621652 | 15621556 | ID=MS.gene63030.t1.exon3;Parent=MS.gene63030.t1 |
| chr1.2 | CDS | 15621556 | 15621652 | 15621556 | ID=cds.MS.gene63030.t1;Parent=MS.gene63030.t1 |
| chr1.2 | exon | 15621036 | 15621242 | 15621036 | ID=MS.gene63030.t1.exon4;Parent=MS.gene63030.t1 |
| chr1.2 | CDS | 15621036 | 15621242 | 15621036 | ID=cds.MS.gene63030.t1;Parent=MS.gene63030.t1 |
| chr1.2 | exon | 15620641 | 15620756 | 15620641 | ID=MS.gene63030.t1.exon5;Parent=MS.gene63030.t1 |
| chr1.2 | CDS | 15620641 | 15620756 | 15620641 | ID=cds.MS.gene63030.t1;Parent=MS.gene63030.t1 |
| chr1.2 | exon | 15620309 | 15620413 | 15620309 | ID=MS.gene63030.t1.exon6;Parent=MS.gene63030.t1 |
| chr1.2 | CDS | 15620309 | 15620413 | 15620309 | ID=cds.MS.gene63030.t1;Parent=MS.gene63030.t1 |
| chr1.2 | exon | 15620052 | 15620224 | 15620052 | ID=MS.gene63030.t1.exon7;Parent=MS.gene63030.t1 |
| chr1.2 | CDS | 15620052 | 15620224 | 15620052 | ID=cds.MS.gene63030.t1;Parent=MS.gene63030.t1 |
| chr1.2 | exon | 15619856 | 15619946 | 15619856 | ID=MS.gene63030.t1.exon8;Parent=MS.gene63030.t1 |
| chr1.2 | CDS | 15619856 | 15619946 | 15619856 | ID=cds.MS.gene63030.t1;Parent=MS.gene63030.t1 |
| chr1.2 | exon | 15619425 | 15619574 | 15619425 | ID=MS.gene63030.t1.exon9;Parent=MS.gene63030.t1 |
| chr1.2 | CDS | 15619425 | 15619574 | 15619425 | ID=cds.MS.gene63030.t1;Parent=MS.gene63030.t1 |
| chr1.2 | exon | 15618655 | 15618855 | 15618655 | ID=MS.gene63030.t1.exon10;Parent=MS.gene63030.t1 |
| chr1.2 | CDS | 15618655 | 15618855 | 15618655 | ID=cds.MS.gene63030.t1;Parent=MS.gene63030.t1 |
| Gene Sequence |
| Protein sequence |
