AlfalfaGEDB | MS.gene031181

M. sativa cultivar XinJiangDaYe / MS.gene031181

KEGG: K09496
GO: GO:0000166 GO:0003674 GO:0005488 GO:0005515 GO:0005524 GO:0006457 GO:0008144 GO:0008150 GO:0009987 GO:0017076 GO:0030554 GO:0032553 GO:0032555 GO:0032559 GO:0035639 GO:0036094 GO:0043167 GO:0043168 GO:0051082 GO:0097159 GO:0097367 GO:1901265 GO:1901363
PFAM: PF00118.27

Nr:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene031181.t1	XP_013461938.1	99.8	532	1	0	1	532	1	532	1.80E-278	968

Swissprot:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene031181.t1	Q9LV21	85.8	536	72	1	1	532	1	536	5.5e-252	871.3

Trembl:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene031181.t1	A0A072V3N8	99.8	532	1	0	1	532	1	532	1.3e-278	968.0

TFs/TRs:

Gene ID	Type	Classification

Protein Kinases:

Gene ID	Type	Classification

Network:

Co-expression Network:

Gene1	Gene2	correlation coefficient	p_value	FDR

PPI:

Gene1	Gene2	Type
MS.gene031181	MS.gene47857	PPI
MS.gene031181	MS.gene025228	PPI
MS.gene031181	MS.gene047578	PPI
MS.gene031181	MS.gene016844	PPI
MS.gene37845	MS.gene031181	PPI
MS.gene045180	MS.gene031181	PPI
MS.gene031181	MS.gene98781	PPI
MS.gene031181	MS.gene058828	PPI
MS.gene031181	MS.gene045185	PPI
MS.gene031181	MS.gene66973	PPI
MS.gene031181	MS.gene058827	PPI
MS.gene031181	MS.gene002442	PPI
MS.gene026610	MS.gene031181	PPI
MS.gene066566	MS.gene031181	PPI
MS.gene031181	MS.gene91774	PPI
MS.gene069339	MS.gene031181	PPI
MS.gene78457	MS.gene031181	PPI
MS.gene031181	MS.gene01091	PPI
MS.gene031181	MS.gene99406	PPI
MS.gene031181	MS.gene62993	PPI
MS.gene031181	MS.gene27902	PPI
MS.gene037185	MS.gene031181	PPI
MS.gene031181	MS.gene75537	PPI
MS.gene031181	MS.gene050877	PPI
MS.gene031181	MS.gene87976	PPI
MS.gene031181	MS.gene59146	PPI
MS.gene061963	MS.gene031181	PPI
MS.gene039012	MS.gene031181	PPI
MS.gene031181	MS.gene83135	PPI
MS.gene031181	MS.gene92155	PPI
MS.gene39837	MS.gene031181	PPI
MS.gene031181	MS.gene067072	PPI
MS.gene031181	MS.gene97876	PPI
MS.gene031181	MS.gene77306	PPI
MS.gene031181	MS.gene01425	PPI
MS.gene031181	MS.gene073967	PPI
MS.gene64440	MS.gene031181	PPI
MS.gene042598	MS.gene031181	PPI
MS.gene77617	MS.gene031181	PPI

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene031181.t1	MTR_3g109925	99.812	532	1	0	1	532	1	532	0.0	1070
MS.gene031181.t1	MTR_3g109925	85.150	532	22	5	1	532	1	475	0.0	877
MS.gene031181.t1	MTR_8g105970	73.740	377	39	7	124	495	32	353	0.0	520
MS.gene031181.t1	MTR_3g086330	37.500	512	307	7	24	530	28	531	1.62e-103	321
MS.gene031181.t1	MTR_7g113470	34.816	517	318	7	20	530	14	517	3.12e-89	284
MS.gene031181.t1	MTR_7g067470	35.029	511	313	7	26	530	20	517	1.79e-88	282
MS.gene031181.t1	MTR_8g088270	34.476	525	316	9	24	529	19	534	1.03e-84	273
MS.gene031181.t1	MTR_5g087560	32.877	511	323	8	28	529	27	526	2.59e-79	259
MS.gene031181.t1	MTR_2g013540	30.528	511	344	7	25	530	20	524	7.56e-73	242
MS.gene031181.t1	MTR_6g032870	28.571	511	351	5	23	529	20	520	7.51e-69	231
MS.gene031181.t1	MTR_1g030650	27.626	514	358	5	23	532	23	526	1.49e-68	230
MS.gene031181.t1	MTR_7g406870	27.519	516	347	10	29	529	22	525	1.04e-50	182
MS.gene031181.t1	MTR_2g013540	28.534	382	259	8	154	530	3	375	3.07e-35	137
MS.gene031181.t1	MTR_4g057020	57.658	111	13	1	294	404	54	130	9.03e-29	111
MS.gene031181.t1	MTR_7g406870	25.647	425	289	10	120	529	1	413	1.24e-27	115
MS.gene031181.t1	MTR_8g010750	25.366	410	206	12	27	383	30	392	3.81e-14	75.1

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene031181.t1	AT3G18190	87.873	536	61	1	1	532	1	536	0.0	964
MS.gene031181.t1	AT1G24510	38.447	515	304	7	21	530	25	531	2.13e-104	323
MS.gene031181.t1	AT1G24510	37.553	474	283	7	62	530	13	478	1.79e-89	283
MS.gene031181.t1	AT1G24510	36.933	463	279	7	73	530	1	455	9.21e-84	268
MS.gene031181.t1	AT3G20050	33.898	531	323	9	18	529	13	534	9.03e-83	268
MS.gene031181.t1	AT5G20890	33.656	517	324	7	20	530	14	517	6.74e-82	265
MS.gene031181.t1	AT3G11830	32.485	511	325	7	28	529	27	526	1.74e-76	251
MS.gene031181.t1	AT3G11830	32.485	511	323	8	28	529	27	524	1.02e-74	247
MS.gene031181.t1	AT3G03960	28.817	524	357	7	14	532	17	529	1.01e-71	239
MS.gene031181.t1	AT5G26360	31.311	511	340	7	25	530	20	524	2.55e-71	238
MS.gene031181.t1	AT5G16070	29.594	517	324	13	30	520	23	525	6.90e-53	188
MS.gene031181.t1	AT3G02530	28.794	514	333	11	30	520	23	526	3.28e-51	183

Find 119 sgRNAs with CRISPR-Local

Find 146 sgRNAs with CRISPR-GE

CRISPR-Local

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
GGGAAGATTGTGAAGATTTC+TGG	0.204894	3.4:+94664713	MS.gene031181:CDS
TGTGAAGATTTCTGGTATTA+AGG	0.209465	3.4:+94664721	MS.gene031181:CDS
TCTTGCTAAAGCTAAGATTT+TGG	0.234466	3.4:+94664553	MS.gene031181:CDS
GATTTCTGGTATTAAGGATA+TGG	0.239423	3.4:+94664727	MS.gene031181:CDS
ATCGTCTTTGCGTTTGTTAT+CGG	0.257624	3.4:-94663673	None:intergenic
AGGGATGATTAAGAAGATTA+AGG	0.275419	3.4:+94664457	MS.gene031181:CDS
GCATTCTCAGCAAGGGTATA+TGG	0.307049	3.4:-94664986	None:intergenic
CTTGTGGAAGAGCTTTCTCT+TGG	0.336541	3.4:+94664686	MS.gene031181:CDS
TCACGGAGATCCACCATTTC+CGG	0.339036	3.4:-94664197	None:intergenic
AGCAGCGGAGTCTTGAGATT+TGG	0.347607	3.4:-94663883	None:intergenic
CTCTGTTCTATATCTGTCTT+AGG	0.348731	3.4:-94664371	None:intergenic
TGTCAAGGCAATTGGGTGCT+TGG	0.354279	3.4:+94664897	MS.gene031181:CDS
ATCGGTGTAGGATTCGGTTT+TGG	0.362816	3.4:-94663655	None:intergenic
TCTCACCGCCATGGCTGTTC+CGG	0.362983	3.4:+94664040	MS.gene031181:CDS
GATAGAGCTGTCAAGGCAAT+TGG	0.370145	3.4:+94664889	MS.gene031181:CDS
TTGTGGAAGAGCTTTCTCTT+GGG	0.371995	3.4:+94664687	MS.gene031181:CDS
ATGATGCTTTGTGTGTTGTT+AGG	0.372583	3.4:+94664819	MS.gene031181:CDS
TTTGTTATCGGTGTAGGATT+CGG	0.375261	3.4:-94663661	None:intergenic
CATACCTTTGGGGCCGAGAC+TGG	0.392090	3.4:-94663748	None:intergenic
AATCTTAGCATTCTCCATTC+TGG	0.394765	3.4:-94664321	None:intergenic
GGAGGATCGGTGAGGGGCTG+CGG	0.401126	3.4:-94663634	None:intergenic
GTCAAGGCAATTGGGTGCTT+GGG	0.415529	3.4:+94664898	MS.gene031181:CDS
CGATCCCGCTAGGCCGGAAA+TGG	0.417675	3.4:+94664184	MS.gene031181:CDS
AGAACTGAATCAACAGCAAT+AGG	0.421556	3.4:-94664152	None:intergenic
AGCTCAGTAACAATTGCAAT+CGG	0.423035	3.4:-94665019	None:intergenic
TTTGTGTGTTGTTAGGTGTT+TGG	0.427682	3.4:+94664826	MS.gene031181:CDS
AAATGCTCAATATTAGCAAT+AGG	0.434996	3.4:-94664635	None:intergenic
ATTTCTGGTATTAAGGATAT+GGG	0.441434	3.4:+94664728	MS.gene031181:CDS
TTTGCGTTTGTTATCGGTGT+AGG	0.444094	3.4:-94663667	None:intergenic
TAGCACTTCGTTGAATAGTA+AGG	0.456781	3.4:+94664100	MS.gene031181:CDS
TCACGATCAGTGAGTTCAAC+CGG	0.461390	3.4:-94664059	None:intergenic
AACGCCGTTCGCACCAGTCT+CGG	0.462746	3.4:+94663735	MS.gene031181:CDS
ACCACAACTGTGCTTGTTCG+TGG	0.463002	3.4:+94664755	MS.gene031181:CDS
TACTGAGCTTGTGAAGGGCT+TGG	0.463815	3.4:+94664259	MS.gene031181:CDS
GTGATTATTCTCAGATGGAT+AGG	0.464278	3.4:+94664405	MS.gene031181:CDS
CAAGACTCCGCTGCTGGTGA+TGG	0.468281	3.4:+94663891	MS.gene031181:CDS
ATTAAGAAGATTAAGGCAAC+CGG	0.476085	3.4:+94664464	MS.gene031181:CDS
GAATGTGGTGCAGCCATTGC+TGG	0.481414	3.4:+94665120	MS.gene031181:CDS
GAAGAGCTTTCTCTTGGGGA+TGG	0.486289	3.4:+94664692	MS.gene031181:CDS
TCCACCATTTCCGGCCTAGC+GGG	0.488011	3.4:-94664188	None:intergenic
GCAATTGGGTGCTTGGGCTA+AGG	0.488468	3.4:+94664904	MS.gene031181:CDS
AGGCAAACAATTAAGAGTCT+TGG	0.489277	3.4:-94664615	None:intergenic
TGTCTCCTCCTTCTCTCTCA+TGG	0.491398	3.4:+94663957	MS.gene031181:CDS
TGTGGAAGAGCTTTCTCTTG+GGG	0.491536	3.4:+94664688	MS.gene031181:CDS
TATACCCTTGCTGAGAATGC+AGG	0.493053	3.4:+94664989	MS.gene031181:CDS
CAGTCTCGGCCCCAAAGGTA+TGG	0.493521	3.4:+94663749	MS.gene031181:CDS
AATCAACAACACATTACAAC+CGG	0.494792	3.4:-94664483	None:intergenic
CTGAGGAATCGTCATGCTAA+AGG	0.500255	3.4:+94665040	MS.gene031181:CDS
AACGGCGTTAGCGACGGAAC+GGG	0.500736	3.4:-94663721	None:intergenic
TGTCATCGATCCCGCTAGGC+CGG	0.501041	3.4:+94664178	MS.gene031181:CDS
TCAACACTGGAATCAATGTC+AGG	0.507995	3.4:+94665068	MS.gene031181:CDS
AAATCTCAAGACTCCGCTGC+TGG	0.512750	3.4:+94663885	MS.gene031181:CDS
ATAGAGCTGTCAAGGCAATT+GGG	0.513984	3.4:+94664890	MS.gene031181:CDS
GATTGCAGGTGGTGGTGCTC+CGG	0.514051	3.4:+94664865	MS.gene031181:CDS
TGCCTTGACAGCTCTATCTC+CGG	0.516484	3.4:-94664884	None:intergenic
GTTGGTGATGATAACTTCGT+TGG	0.525584	3.4:-94663793	None:intergenic
GGAACGGGCGGCGATGATGT+TGG	0.529719	3.4:-94663706	None:intergenic
TCCCGCTAGGCCGGAAATGG+TGG	0.531201	3.4:+94664187	MS.gene031181:CDS
AAGAGCTTTCTCTTGGGGAT+GGG	0.531234	3.4:+94664693	MS.gene031181:CDS
AACTTGCATCTTGTTGAGGA+TGG	0.540091	3.4:-94663826	None:intergenic
GGTTAGTGATTATTCTCAGA+TGG	0.543811	3.4:+94664400	MS.gene031181:CDS
ACATTTCTCGAGAAGTGCTC+CGG	0.552049	3.4:-94663937	None:intergenic
CGGCGATGATGTTGGATTGA+CGG	0.559941	3.4:-94663698	None:intergenic
GATGATAACTTCGTTGGAAG+AGG	0.560445	3.4:-94663787	None:intergenic
CTCCGGAGATAGAGCTGTCA+AGG	0.563162	3.4:+94664882	MS.gene031181:CDS
GAACGGCGTTAGCGACGGAA+CGG	0.564350	3.4:-94663722	None:intergenic
GGGGCCGAGACTGGTGCGAA+CGG	0.565754	3.4:-94663739	None:intergenic
AGTGAATCAGAGATAACAGT+AGG	0.569565	3.4:-94663987	None:intergenic
AAGGTTAGTCATGCTGCTGG+TGG	0.570337	3.4:+94664293	MS.gene031181:CDS
GGCGATGACAACAACGGTGG+TGG	0.571260	3.4:-94663916	None:intergenic
CGCACCAGTCTCGGCCCCAA+AGG	0.572245	3.4:+94663744	MS.gene031181:CDS
CCTCACACACTCTGTTGCCA+AGG	0.573445	3.4:-94665161	None:intergenic
TGGAACAACTTCAAGTGCCT+CGG	0.574575	3.4:-94664966	None:intergenic
GCTCAGTAACAATTGCAATC+GGG	0.575791	3.4:-94665018	None:intergenic
TCTCTGTCATCGATCCCGCT+AGG	0.576821	3.4:+94664174	MS.gene031181:CDS
ACCACCGTTGTTGTCATCGC+CGG	0.577312	3.4:+94663918	MS.gene031181:CDS
GAAGAACTTGCATCTTGTTG+AGG	0.580248	3.4:-94663830	None:intergenic
GGCGTTAGCGACGGAACGGG+CGG	0.589560	3.4:-94663718	None:intergenic
GTTGGGTTATGCTGATCTTG+TGG	0.590393	3.4:+94664670	MS.gene031181:CDS
GGTGGTTCCATCACCAGCAG+CGG	0.591723	3.4:-94663898	None:intergenic
GAATACCATGAGAGAGAAGG+AGG	0.591885	3.4:-94663962	None:intergenic
GCACTTGTGCTAACCAGCAA+TGG	0.592202	3.4:-94665133	None:intergenic
TCAAACCTGCATTCTCAGCA+AGG	0.593910	3.4:-94664994	None:intergenic
GAGTTCAACCGGAACAGCCA+TGG	0.594130	3.4:-94664048	None:intergenic
CTGTATTCGTGCATTTGCCG+AGG	0.594695	3.4:+94664949	MS.gene031181:CDS
GGTGCGAACGGCGTTAGCGA+CGG	0.594895	3.4:-94663727	None:intergenic
TGATGATACTGAGCTTGTGA+AGG	0.595971	3.4:+94664253	MS.gene031181:CDS
TTAGCATTCTCCATTCTGGT+AGG	0.596904	3.4:-94664317	None:intergenic
ACACTCTGTTGCCAAGGTGA+TGG	0.598855	3.4:-94665155	None:intergenic
TGCTGGTGGACCTACCAGAA+TGG	0.600235	3.4:+94664307	MS.gene031181:CDS
GCTAAAGGTGAGATCAACAC+TGG	0.604820	3.4:+94665055	MS.gene031181:CDS
TGTTCTATATCTGTCTTAGG+AGG	0.605667	3.4:-94664368	None:intergenic
GGTGAATACCATGAGAGAGA+AGG	0.606764	3.4:-94663965	None:intergenic
GAGGATGGTAGCGCCGTCGT+TGG	0.607730	3.4:-94663811	None:intergenic
GATGATACTGAGCTTGTGAA+GGG	0.610892	3.4:+94664254	MS.gene031181:CDS
TTGCAATTGTTACTGAGCTG+AGG	0.612866	3.4:+94665023	MS.gene031181:CDS
TCCACGAACAAGCACAGTTG+TGG	0.612984	3.4:-94664756	None:intergenic
GCTGCACCACATTCTCCTCA+AGG	0.613760	3.4:-94665111	None:intergenic
TAGCACAAGTGCCATCACCT+TGG	0.618089	3.4:+94665144	MS.gene031181:CDS
TCAAATTACAAACATCCTTG+AGG	0.621720	3.4:+94665096	MS.gene031181:CDS
AAGAAGGTTAGTCATGCTGC+TGG	0.624743	3.4:+94664290	MS.gene031181:CDS
ACTGGAATCAATGTCAGGAA+AGG	0.625427	3.4:+94665073	MS.gene031181:CDS
AAACATCCTTGAGGAGAATG+TGG	0.628033	3.4:+94665105	MS.gene031181:CDS
TCTTAACAATCTTCACATCA+CGG	0.628490	3.4:-94664214	None:intergenic
TGTTGATGTTCTCACCGCCA+TGG	0.628840	3.4:+94664031	MS.gene031181:CDS
AACATCAACAGCTTTAACAG+AGG	0.629483	3.4:-94664018	None:intergenic
GTGAAGATTGTTAAGAAGCT+CGG	0.630785	3.4:+94664221	MS.gene031181:CDS
TTAGGTGTTTGGTTGCCAAG+AGG	0.631658	3.4:+94664837	MS.gene031181:CDS
ATCCACCATTTCCGGCCTAG+CGG	0.644279	3.4:-94664189	None:intergenic
GTGAATCAGAGATAACAGTA+GGG	0.649997	3.4:-94663986	None:intergenic
CCTTGGCAACAGAGTGTGTG+AGG	0.652881	3.4:+94665161	MS.gene031181:CDS
CAAACCTGCATTCTCAGCAA+GGG	0.653006	3.4:-94664993	None:intergenic
AGATATAGAACAGAGTATTG+TGG	0.666081	3.4:+94664379	MS.gene031181:CDS
GAAGTTATCATCACCAACGA+CGG	0.680075	3.4:+94663798	MS.gene031181:CDS
TTCAACCGGAACAGCCATGG+CGG	0.690129	3.4:-94664045	None:intergenic
AAGATTGTTAAGAAGCTCGG+TGG	0.695277	3.4:+94664224	MS.gene031181:CDS
TGCTCCGGCGATGACAACAA+CGG	0.714797	3.4:-94663922	None:intergenic
TCCGGCGATGACAACAACGG+TGG	0.732056	3.4:-94663919	None:intergenic
TTGATGATATTGTAACTGTG+AGG	0.759737	3.4:+94665197	MS.gene031181:CDS

CRISPR-GE

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
!	AAATGCTCAATATTAGCAAT+AGG	-	chr3.4:94664638-94664657	None:intergenic	25.0%
!!!	ATTTCTGGTATTAAGGATAT+GGG	+	chr3.4:94664728-94664747	MS.gene031181:CDS	25.0%
	AATCAACAACACATTACAAC+CGG	-	chr3.4:94664486-94664505	None:intergenic	30.0%
	AGGGATGATTAAGAAGATTA+AGG	+	chr3.4:94664457-94664476	MS.gene031181:CDS	30.0%
	ATTAAGAAGATTAAGGCAAC+CGG	+	chr3.4:94664464-94664483	MS.gene031181:CDS	30.0%
	TCAAATTACAAACATCCTTG+AGG	+	chr3.4:94665096-94665115	MS.gene031181:CDS	30.0%
	TCTTAACAATCTTCACATCA+CGG	-	chr3.4:94664217-94664236	None:intergenic	30.0%
!	AAGAGAGGAGTTACATTTTA+GGG	+	chr3.4:94664438-94664457	MS.gene031181:CDS	30.0%
!	ATCATTTTGTCCATACCTTT+GGG	-	chr3.4:94663762-94663781	None:intergenic	30.0%
!	TCTTGCTAAAGCTAAGATTT+TGG	+	chr3.4:94664553-94664572	MS.gene031181:CDS	30.0%
!	TTGATGATATTGTAACTGTG+AGG	+	chr3.4:94665197-94665216	MS.gene031181:CDS	30.0%
!!	AGATATAGAACAGAGTATTG+TGG	+	chr3.4:94664379-94664398	MS.gene031181:CDS	30.0%
!!	GATTTCTGGTATTAAGGATA+TGG	+	chr3.4:94664727-94664746	MS.gene031181:CDS	30.0%
!!	TGTGAAGATTTCTGGTATTA+AGG	+	chr3.4:94664721-94664740	MS.gene031181:CDS	30.0%
	AATCTTAGCATTCTCCATTC+TGG	-	chr3.4:94664324-94664343	None:intergenic	35.0%
	AGAACTGAATCAACAGCAAT+AGG	-	chr3.4:94664155-94664174	None:intergenic	35.0%
	AGCTCAGTAACAATTGCAAT+CGG	-	chr3.4:94665022-94665041	None:intergenic	35.0%
	AGGCAAACAATTAAGAGTCT+TGG	-	chr3.4:94664618-94664637	None:intergenic	35.0%
	AGTGAATCAGAGATAACAGT+AGG	-	chr3.4:94663990-94664009	None:intergenic	35.0%
	CTCTGTTCTATATCTGTCTT+AGG	-	chr3.4:94664374-94664393	None:intergenic	35.0%
	GGTTAGTGATTATTCTCAGA+TGG	+	chr3.4:94664400-94664419	MS.gene031181:CDS	35.0%
	GTGAAGATTGTTAAGAAGCT+CGG	+	chr3.4:94664221-94664240	MS.gene031181:CDS	35.0%
	GTGAATCAGAGATAACAGTA+GGG	-	chr3.4:94663989-94664008	None:intergenic	35.0%
	GTGATTATTCTCAGATGGAT+AGG	+	chr3.4:94664405-94664424	MS.gene031181:CDS	35.0%
	TAGCACTTCGTTGAATAGTA+AGG	+	chr3.4:94664100-94664119	MS.gene031181:CDS	35.0%
	TGTTCTATATCTGTCTTAGG+AGG	-	chr3.4:94664371-94664390	None:intergenic	35.0%
!	AACATCAACAGCTTTAACAG+AGG	-	chr3.4:94664021-94664040	None:intergenic	35.0%
!	ATGATGCTTTGTGTGTTGTT+AGG	+	chr3.4:94664819-94664838	MS.gene031181:CDS	35.0%
!	GAAGAGAGGAGTTACATTTT+AGG	+	chr3.4:94664437-94664456	MS.gene031181:CDS	35.0%
!	GATCATTTTGTCCATACCTT+TGG	-	chr3.4:94663763-94663782	None:intergenic	35.0%
!	TCAGATGGATAGGATTTTGA+AGG	+	chr3.4:94664415-94664434	MS.gene031181:CDS	35.0%
!	TCATTTTGTCCATACCTTTG+GGG	-	chr3.4:94663761-94663780	None:intergenic	35.0%
!	TTTGTGTGTTGTTAGGTGTT+TGG	+	chr3.4:94664826-94664845	MS.gene031181:CDS	35.0%
!	TTTGTTATCGGTGTAGGATT+CGG	-	chr3.4:94663664-94663683	None:intergenic	35.0%
!!	ATAGGATTTTGAAGGAAGAG+AGG	+	chr3.4:94664423-94664442	MS.gene031181:CDS	35.0%
!!	ATCGTCTTTGCGTTTGTTAT+CGG	-	chr3.4:94663676-94663695	None:intergenic	35.0%
	AAACATCCTTGAGGAGAATG+TGG	+	chr3.4:94665105-94665124	MS.gene031181:CDS	40.0%
	AACTTGCATCTTGTTGAGGA+TGG	-	chr3.4:94663829-94663848	None:intergenic	40.0%
	AAGATTGTTAAGAAGCTCGG+TGG	+	chr3.4:94664224-94664243	MS.gene031181:CDS	40.0%
	ACCTGCAATCAAAAACCTCT+TGG	-	chr3.4:94664855-94664874	None:intergenic	40.0%
	ACTGGAATCAATGTCAGGAA+AGG	+	chr3.4:94665073-94665092	MS.gene031181:CDS	40.0%
	ATAGAGCTGTCAAGGCAATT+GGG	+	chr3.4:94664890-94664909	MS.gene031181:CDS	40.0%
	GAAGAACTTGCATCTTGTTG+AGG	-	chr3.4:94663833-94663852	None:intergenic	40.0%
	GAAGTTATCATCACCAACGA+CGG	+	chr3.4:94663798-94663817	MS.gene031181:CDS	40.0%
	GATGATAACTTCGTTGGAAG+AGG	-	chr3.4:94663790-94663809	None:intergenic	40.0%
	GATGATACTGAGCTTGTGAA+GGG	+	chr3.4:94664254-94664273	MS.gene031181:CDS	40.0%
	GCTCAGTAACAATTGCAATC+GGG	-	chr3.4:94665021-94665040	None:intergenic	40.0%
	GGGAAGATTGTGAAGATTTC+TGG	+	chr3.4:94664713-94664732	MS.gene031181:CDS	40.0%
	TCAACACTGGAATCAATGTC+AGG	+	chr3.4:94665068-94665087	MS.gene031181:CDS	40.0%
	TGATGATACTGAGCTTGTGA+AGG	+	chr3.4:94664253-94664272	MS.gene031181:CDS	40.0%
	TTAGCATTCTCCATTCTGGT+AGG	-	chr3.4:94664320-94664339	None:intergenic	40.0%
	TTGCAATTGTTACTGAGCTG+AGG	+	chr3.4:94665023-94665042	MS.gene031181:CDS	40.0%
	TTGTGGAAGAGCTTTCTCTT+GGG	+	chr3.4:94664687-94664706	MS.gene031181:CDS	40.0%
!	CATTTTCGTGCTGAGAAGTT+GGG	+	chr3.4:94664653-94664672	MS.gene031181:CDS	40.0%
!	GAGTTCAACGAGCATTTTAG+CGG	-	chr3.4:94663862-94663881	None:intergenic	40.0%
!!	AAGAGGTTTTTGATTGCAGG+TGG	+	chr3.4:94664854-94664873	MS.gene031181:CDS	40.0%
!!	GGGCTTGGTTTTTGATAAGA+AGG	+	chr3.4:94664274-94664293	MS.gene031181:CDS	40.0%
!!	GTTGGTGATGATAACTTCGT+TGG	-	chr3.4:94663796-94663815	None:intergenic	40.0%
!!	TTTGCGTTTGTTATCGGTGT+AGG	-	chr3.4:94663670-94663689	None:intergenic	40.0%
	AAGAGCTTTCTCTTGGGGAT+GGG	+	chr3.4:94664693-94664712	MS.gene031181:CDS	45.0%
	CAAACCTGCATTCTCAGCAA+GGG	-	chr3.4:94664996-94665015	None:intergenic	45.0%
	CTGAGGAATCGTCATGCTAA+AGG	+	chr3.4:94665040-94665059	MS.gene031181:CDS	45.0%
	CTTGTGGAAGAGCTTTCTCT+TGG	+	chr3.4:94664686-94664705	MS.gene031181:CDS	45.0%
	GAATACCATGAGAGAGAAGG+AGG	-	chr3.4:94663965-94663984	None:intergenic	45.0%
	GATAGAGCTGTCAAGGCAAT+TGG	+	chr3.4:94664889-94664908	MS.gene031181:CDS	45.0%
	GCTAAAGGTGAGATCAACAC+TGG	+	chr3.4:94665055-94665074	MS.gene031181:CDS	45.0%
	GGTGAATACCATGAGAGAGA+AGG	-	chr3.4:94663968-94663987	None:intergenic	45.0%
	GTTGGGTTATGCTGATCTTG+TGG	+	chr3.4:94664670-94664689	MS.gene031181:CDS	45.0%
	TATACCCTTGCTGAGAATGC+AGG	+	chr3.4:94664989-94665008	MS.gene031181:CDS	45.0%
	TCAAACCTGCATTCTCAGCA+AGG	-	chr3.4:94664997-94665016	None:intergenic	45.0%
	TCACGATCAGTGAGTTCAAC+CGG	-	chr3.4:94664062-94664081	None:intergenic	45.0%
	TGGAACAACTTCAAGTGCCT+CGG	-	chr3.4:94664969-94664988	None:intergenic	45.0%
	TGTGGAAGAGCTTTCTCTTG+GGG	+	chr3.4:94664688-94664707	MS.gene031181:CDS	45.0%
	TTAGGTGTTTGGTTGCCAAG+AGG	+	chr3.4:94664837-94664856	MS.gene031181:CDS	45.0%
!	AAGAAGGTTAGTCATGCTGC+TGG	+	chr3.4:94664290-94664309	MS.gene031181:CDS	45.0%
!	AAGGTTTTGCATGGGATGGA+GGG	+	chr3.4:94664923-94664942	MS.gene031181:CDS	45.0%
!	CTTGGGCTAAGGTTTTGCAT+GGG	+	chr3.4:94664915-94664934	MS.gene031181:CDS	45.0%
!	GCATTCTCAGCAAGGGTATA+TGG	-	chr3.4:94664989-94665008	None:intergenic	45.0%
!	GCATTTTCGTGCTGAGAAGT+TGG	+	chr3.4:94664652-94664671	MS.gene031181:CDS	45.0%
!	TAAGGTTTTGCATGGGATGG+AGG	+	chr3.4:94664922-94664941	MS.gene031181:CDS	45.0%
!!	ACATTTCTCGAGAAGTGCTC+CGG	-	chr3.4:94663940-94663959	None:intergenic	45.0%
!!	AGGTTTTTGATTGCAGGTGG+TGG	+	chr3.4:94664857-94664876	MS.gene031181:CDS	45.0%
!!	ATCGGTGTAGGATTCGGTTT+TGG	-	chr3.4:94663658-94663677	None:intergenic	45.0%
!!	GCCAAGAGGTTTTTGATTGC+AGG	+	chr3.4:94664851-94664870	MS.gene031181:CDS	45.0%
!!	TTCAACGAGCATTTTAGCGG+CGG	-	chr3.4:94663859-94663878	None:intergenic	45.0%
!!!	AGGATTCGGTTTTGGAGGAT+CGG	-	chr3.4:94663650-94663669	None:intergenic	45.0%
	AAATCTCAAGACTCCGCTGC+TGG	+	chr3.4:94663885-94663904	MS.gene031181:CDS	50.0%
	ACACTCTGTTGCCAAGGTGA+TGG	-	chr3.4:94665158-94665177	None:intergenic	50.0%
	ACCACAACTGTGCTTGTTCG+TGG	+	chr3.4:94664755-94664774	MS.gene031181:CDS	50.0%
	AGCAGCGGAGTCTTGAGATT+TGG	-	chr3.4:94663886-94663905	None:intergenic	50.0%
	CGGCGATGATGTTGGATTGA+CGG	-	chr3.4:94663701-94663720	None:intergenic	50.0%
	CTGTATTCGTGCATTTGCCG+AGG	+	chr3.4:94664949-94664968	MS.gene031181:CDS	50.0%
	GAAGAGCTTTCTCTTGGGGA+TGG	+	chr3.4:94664692-94664711	MS.gene031181:CDS	50.0%
	GCACTTGTGCTAACCAGCAA+TGG	-	chr3.4:94665136-94665155	None:intergenic	50.0%
	GTCAAGGCAATTGGGTGCTT+GGG	+	chr3.4:94664898-94664917	MS.gene031181:CDS	50.0%
	TACTGAGCTTGTGAAGGGCT+TGG	+	chr3.4:94664259-94664278	MS.gene031181:CDS	50.0%
	TAGCACAAGTGCCATCACCT+TGG	+	chr3.4:94665144-94665163	MS.gene031181:CDS	50.0%
	TCACGGAGATCCACCATTTC+CGG	-	chr3.4:94664200-94664219	None:intergenic	50.0%
	TCCACGAACAAGCACAGTTG+TGG	-	chr3.4:94664759-94664778	None:intergenic	50.0%
	TGCCTTGACAGCTCTATCTC+CGG	-	chr3.4:94664887-94664906	None:intergenic	50.0%
	TGTCAAGGCAATTGGGTGCT+TGG	+	chr3.4:94664897-94664916	MS.gene031181:CDS	50.0%
	TGTCTCCTCCTTCTCTCTCA+TGG	+	chr3.4:94663957-94663976	MS.gene031181:CDS	50.0%
	TGTTGATGTTCTCACCGCCA+TGG	+	chr3.4:94664031-94664050	MS.gene031181:CDS	50.0%
!	AAGGTTAGTCATGCTGCTGG+TGG	+	chr3.4:94664293-94664312	MS.gene031181:CDS	50.0%
!	GCTTGGGCTAAGGTTTTGCA+TGG	+	chr3.4:94664914-94664933	MS.gene031181:CDS	50.0%
!	GGCTAAGGTTTTGCATGGGA+TGG	+	chr3.4:94664919-94664938	MS.gene031181:CDS	50.0%
!!	GGTGTAGGATTCGGTTTTGG+AGG	-	chr3.4:94663655-94663674	None:intergenic	50.0%
!!	TCAACGAGCATTTTAGCGGC+GGG	-	chr3.4:94663858-94663877	None:intergenic	50.0%
	ACCACCGTTGTTGTCATCGC+CGG	+	chr3.4:94663918-94663937	MS.gene031181:CDS	55.0%
	ATCCACCATTTCCGGCCTAG+CGG	-	chr3.4:94664192-94664211	None:intergenic	55.0%
	CCTCACACACTCTGTTGCCA+AGG	-	chr3.4:94665164-94665183	None:intergenic	55.0%
	CCTTGGCAACAGAGTGTGTG+AGG	+	chr3.4:94665161-94665180	MS.gene031181:CDS	55.0%
	CTCCGGAGATAGAGCTGTCA+AGG	+	chr3.4:94664882-94664901	MS.gene031181:CDS	55.0%
	GAATGTGGTGCAGCCATTGC+TGG	+	chr3.4:94665120-94665139	MS.gene031181:CDS	55.0%
	GAGTTCAACCGGAACAGCCA+TGG	-	chr3.4:94664051-94664070	None:intergenic	55.0%
	GCAATTGGGTGCTTGGGCTA+AGG	+	chr3.4:94664904-94664923	MS.gene031181:CDS	55.0%
	GCTGCACCACATTCTCCTCA+AGG	-	chr3.4:94665114-94665133	None:intergenic	55.0%
	TCTCTGTCATCGATCCCGCT+AGG	+	chr3.4:94664174-94664193	MS.gene031181:CDS	55.0%
	TGCTCCGGCGATGACAACAA+CGG	-	chr3.4:94663925-94663944	None:intergenic	55.0%
	TTCAACCGGAACAGCCATGG+CGG	-	chr3.4:94664048-94664067	None:intergenic	55.0%
!	TGCTGGTGGACCTACCAGAA+TGG	+	chr3.4:94664307-94664326	MS.gene031181:CDS	55.0%
!!!	CGGTTTTGGAGGATCGGTGA+GGG	-	chr3.4:94663644-94663663	None:intergenic	55.0%
!!!	GGTTTTGGAGGATCGGTGAG+GGG	-	chr3.4:94663643-94663662	None:intergenic	55.0%
!!!	TCGGTTTTGGAGGATCGGTG+AGG	-	chr3.4:94663645-94663664	None:intergenic	55.0%
	AACGCCGTTCGCACCAGTCT+CGG	+	chr3.4:94663735-94663754	MS.gene031181:CDS	60.0%
	AACGGCGTTAGCGACGGAAC+GGG	-	chr3.4:94663724-94663743	None:intergenic	60.0%
	CAAGACTCCGCTGCTGGTGA+TGG	+	chr3.4:94663891-94663910	MS.gene031181:CDS	60.0%
	CAGTCTCGGCCCCAAAGGTA+TGG	+	chr3.4:94663749-94663768	MS.gene031181:CDS	60.0%
	GAACGGCGTTAGCGACGGAA+CGG	-	chr3.4:94663725-94663744	None:intergenic	60.0%
	GGCGATGACAACAACGGTGG+TGG	-	chr3.4:94663919-94663938	None:intergenic	60.0%
	GGTGGTTCCATCACCAGCAG+CGG	-	chr3.4:94663901-94663920	None:intergenic	60.0%
	TCCACCATTTCCGGCCTAGC+GGG	-	chr3.4:94664191-94664210	None:intergenic	60.0%
	TCCGGCGATGACAACAACGG+TGG	-	chr3.4:94663922-94663941	None:intergenic	60.0%
	TCTCACCGCCATGGCTGTTC+CGG	+	chr3.4:94664040-94664059	MS.gene031181:CDS	60.0%
	TGTCATCGATCCCGCTAGGC+CGG	+	chr3.4:94664178-94664197	MS.gene031181:CDS	60.0%
!	GATTGCAGGTGGTGGTGCTC+CGG	+	chr3.4:94664865-94664884	MS.gene031181:CDS	60.0%
!!	CATACCTTTGGGGCCGAGAC+TGG	-	chr3.4:94663751-94663770	None:intergenic	60.0%
	CGATCCCGCTAGGCCGGAAA+TGG	+	chr3.4:94664184-94664203	MS.gene031181:CDS	65.0%
	GGAACGGGCGGCGATGATGT+TGG	-	chr3.4:94663709-94663728	None:intergenic	65.0%
	GGTGCGAACGGCGTTAGCGA+CGG	-	chr3.4:94663730-94663749	None:intergenic	65.0%
	TCCCGCTAGGCCGGAAATGG+TGG	+	chr3.4:94664187-94664206	MS.gene031181:CDS	65.0%
!	GAGGATGGTAGCGCCGTCGT+TGG	-	chr3.4:94663814-94663833	None:intergenic	65.0%
	CGCACCAGTCTCGGCCCCAA+AGG	+	chr3.4:94663744-94663763	MS.gene031181:CDS	70.0%
	GGAGGATCGGTGAGGGGCTG+CGG	-	chr3.4:94663637-94663656	None:intergenic	70.0%
	GGCGTTAGCGACGGAACGGG+CGG	-	chr3.4:94663721-94663740	None:intergenic	70.0%
	GGGGCCGAGACTGGTGCGAA+CGG	-	chr3.4:94663742-94663761	None:intergenic	70.0%

Chromosome	Type	Strat	End	Strand	Name
chr3.4	gene	94663624	94665222	94663624	ID=MS.gene031181
chr3.4	mRNA	94663624	94665222	94663624	ID=MS.gene031181.t1;Parent=MS.gene031181
chr3.4	exon	94663624	94665222	94663624	ID=MS.gene031181.t1.exon1;Parent=MS.gene031181.t1
chr3.4	CDS	94663624	94665222	94663624	ID=cds.MS.gene031181.t1;Parent=MS.gene031181.t1

Gene Sequence

>MS.gene031181

ATGGCAACAACCGCAGCCCCTCACCGATCCTCCAAAACCGAATCCTACACCGATAACAAACGCAAAGACGATGTCCGTCAATCCAACATCATCGCCGCCCGTTCCGTCGCTAACGCCGTTCGCACCAGTCTCGGCCCCAAAGGTATGGACAAAATGATCTCAACCTCTTCCAACGAAGTTATCATCACCAACGACGGCGCTACCATCCTCAACAAGATGCAAGTTCTTCAACCCGCCGCTAAAATGCTCGTTGAACTCTCCAAATCTCAAGACTCCGCTGCTGGTGATGGAACCACCACCGTTGTTGTCATCGCCGGAGCACTTCTCGAGAAATGTCTCCTCCTTCTCTCTCATGGTATTCACCCTACTGTTATCTCTGATTCACTTCACAAAGCCTCTGTTAAAGCTGTTGATGTTCTCACCGCCATGGCTGTTCCGGTTGAACTCACTGATCGTGATTCACTCGTGAAATCTGCTAGCACTTCGTTGAATAGTAAGGTTGTTAGTCAATACTCTTCGCTTCTCGCTCCTATTGCTGTTGATTCAGTTCTCTCTGTCATCGATCCCGCTAGGCCGGAAATGGTGGATCTCCGTGATGTGAAGATTGTTAAGAAGCTCGGTGGAACAGTTGATGATACTGAGCTTGTGAAGGGCTTGGTTTTTGATAAGAAGGTTAGTCATGCTGCTGGTGGACCTACCAGAATGGAGAATGCTAAGATTGCTGTGATTCAGTTTCAAATTTCGCCTCCTAAGACAGATATAGAACAGAGTATTGTGGTTAGTGATTATTCTCAGATGGATAGGATTTTGAAGGAAGAGAGGAGTTACATTTTAGGGATGATTAAGAAGATTAAGGCAACCGGTTGTAATGTGTTGTTGATTCAGAAGAGTATTTTGAGAGATGCTGTTACTGATTTGTCTTTGCATTATCTTGCTAAAGCTAAGATTTTGGTGATTAAAGATGTTGAGCGTGACGAGATTGAGTTCATTACCAAGACTCTTAATTGTTTGCCTATTGCTAATATTGAGCATTTTCGTGCTGAGAAGTTGGGTTATGCTGATCTTGTGGAAGAGCTTTCTCTTGGGGATGGGAAGATTGTGAAGATTTCTGGTATTAAGGATATGGGAAAGACCACAACTGTGCTTGTTCGTGGATCTAATTTGCTTGTGCTCGATGAAGCTGAGCGAAGTCTGCATGATGCTTTGTGTGTTGTTAGGTGTTTGGTTGCCAAGAGGTTTTTGATTGCAGGTGGTGGTGCTCCGGAGATAGAGCTGTCAAGGCAATTGGGTGCTTGGGCTAAGGTTTTGCATGGGATGGAGGGTTACTGTATTCGTGCATTTGCCGAGGCACTTGAAGTTGTTCCATATACCCTTGCTGAGAATGCAGGTTTGAACCCGATTGCAATTGTTACTGAGCTGAGGAATCGTCATGCTAAAGGTGAGATCAACACTGGAATCAATGTCAGGAAAGGTCAAATTACAAACATCCTTGAGGAGAATGTGGTGCAGCCATTGCTGGTTAGCACAAGTGCCATCACCTTGGCAACAGAGTGTGTGAGGATGATTTTGAAGATTGATGATATTGTAACTGTGAGGTAG

Protein sequence

>MS.gene031181.t1

MATTAAPHRSSKTESYTDNKRKDDVRQSNIIAARSVANAVRTSLGPKGMDKMISTSSNEVIITNDGATILNKMQVLQPAAKMLVELSKSQDSAAGDGTTTVVVIAGALLEKCLLLLSHGIHPTVISDSLHKASVKAVDVLTAMAVPVELTDRDSLVKSASTSLNSKVVSQYSSLLAPIAVDSVLSVIDPARPEMVDLRDVKIVKKLGGTVDDTELVKGLVFDKKVSHAAGGPTRMENAKIAVIQFQISPPKTDIEQSIVVSDYSQMDRILKEERSYILGMIKKIKATGCNVLLIQKSILRDAVTDLSLHYLAKAKILVIKDVERDEIEFITKTLNCLPIANIEHFRAEKLGYADLVEELSLGDGKIVKISGIKDMGKTTTVLVRGSNLLVLDEAERSLHDALCVVRCLVAKRFLIAGGGAPEIELSRQLGAWAKVLHGMEGYCIRAFAEALEVVPYTLAENAGLNPIAIVTELRNRHAKGEINTGINVRKGQITNILEENVVQPLLVSTSAITLATECVRMILKIDDIVTVR