AlfalfaGEDB | MS.gene031183

M. sativa cultivar XinJiangDaYe / MS.gene031183

KEGG: K09496
GO: GO:0000166 GO:0003674 GO:0005488 GO:0005515 GO:0005524 GO:0006457 GO:0008144 GO:0008150 GO:0009987 GO:0017076 GO:0030554 GO:0032553 GO:0032555 GO:0032559 GO:0035639 GO:0036094 GO:0043167 GO:0043168 GO:0051082 GO:0097159 GO:0097367 GO:1901265 GO:1901363
PFAM: PF00118.27

Nr:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene031183.t1	XP_013461938.1	99.8	532	1	0	1	532	1	532	1.80E-278	968

Swissprot:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene031183.t1	Q9LV21	85.8	536	72	1	1	532	1	536	5.5e-252	871.3

Trembl:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene031183.t1	A0A072V3N8	99.8	532	1	0	1	532	1	532	1.3e-278	968.0

TFs/TRs:

Gene ID	Type	Classification

Protein Kinases:

Gene ID	Type	Classification

Network:

Co-expression Network:

Gene1	Gene2	correlation coefficient	p_value	FDR

PPI:

Gene1	Gene2	Type
MS.gene042598	MS.gene031183	PPI
MS.gene77617	MS.gene031183	PPI
MS.gene031183	MS.gene83135	PPI
MS.gene031183	MS.gene025228	PPI
MS.gene37845	MS.gene031183	PPI
MS.gene069339	MS.gene031183	PPI
MS.gene78457	MS.gene031183	PPI
MS.gene045180	MS.gene031183	PPI
MS.gene031183	MS.gene016844	PPI
MS.gene031183	MS.gene98781	PPI
MS.gene031183	MS.gene058828	PPI
MS.gene031183	MS.gene47857	PPI
MS.gene031183	MS.gene045185	PPI
MS.gene061963	MS.gene031183	PPI
MS.gene031183	MS.gene66973	PPI
MS.gene031183	MS.gene047578	PPI
MS.gene026610	MS.gene031183	PPI
MS.gene066566	MS.gene031183	PPI
MS.gene031183	MS.gene058827	PPI
MS.gene031183	MS.gene002442	PPI
MS.gene39837	MS.gene031183	PPI
MS.gene031183	MS.gene99406	PPI
MS.gene031183	MS.gene62993	PPI
MS.gene037185	MS.gene031183	PPI
MS.gene031183	MS.gene050877	PPI
MS.gene031183	MS.gene87976	PPI
MS.gene039012	MS.gene031183	PPI
MS.gene031183	MS.gene59146	PPI
MS.gene031183	MS.gene91774	PPI
MS.gene031183	MS.gene01091	PPI
MS.gene031183	MS.gene92155	PPI
MS.gene031183	MS.gene067072	PPI
MS.gene031183	MS.gene97876	PPI
MS.gene64440	MS.gene031183	PPI
MS.gene031183	MS.gene77306	PPI
MS.gene031183	MS.gene27902	PPI
MS.gene031183	MS.gene75537	PPI
MS.gene031183	MS.gene01425	PPI
MS.gene031183	MS.gene073967	PPI

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene031183.t1	MTR_3g109925	99.812	532	1	0	1	532	1	532	0.0	1070
MS.gene031183.t1	MTR_3g109925	85.150	532	22	5	1	532	1	475	0.0	877
MS.gene031183.t1	MTR_8g105970	73.740	377	39	7	124	495	32	353	0.0	520
MS.gene031183.t1	MTR_3g086330	37.500	512	307	7	24	530	28	531	1.62e-103	321
MS.gene031183.t1	MTR_7g113470	34.816	517	318	7	20	530	14	517	3.12e-89	284
MS.gene031183.t1	MTR_7g067470	35.029	511	313	7	26	530	20	517	1.79e-88	282
MS.gene031183.t1	MTR_8g088270	34.476	525	316	9	24	529	19	534	1.03e-84	273
MS.gene031183.t1	MTR_5g087560	32.877	511	323	8	28	529	27	526	2.59e-79	259
MS.gene031183.t1	MTR_2g013540	30.528	511	344	7	25	530	20	524	7.56e-73	242
MS.gene031183.t1	MTR_6g032870	28.571	511	351	5	23	529	20	520	7.51e-69	231
MS.gene031183.t1	MTR_1g030650	27.626	514	358	5	23	532	23	526	1.49e-68	230
MS.gene031183.t1	MTR_7g406870	27.519	516	347	10	29	529	22	525	1.04e-50	182
MS.gene031183.t1	MTR_2g013540	28.534	382	259	8	154	530	3	375	3.07e-35	137
MS.gene031183.t1	MTR_4g057020	57.658	111	13	1	294	404	54	130	9.03e-29	111
MS.gene031183.t1	MTR_7g406870	25.647	425	289	10	120	529	1	413	1.24e-27	115
MS.gene031183.t1	MTR_8g010750	25.366	410	206	12	27	383	30	392	3.81e-14	75.1

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene031183.t1	AT3G18190	87.873	536	61	1	1	532	1	536	0.0	964
MS.gene031183.t1	AT1G24510	38.447	515	304	7	21	530	25	531	2.13e-104	323
MS.gene031183.t1	AT1G24510	37.553	474	283	7	62	530	13	478	1.79e-89	283
MS.gene031183.t1	AT1G24510	36.933	463	279	7	73	530	1	455	9.21e-84	268
MS.gene031183.t1	AT3G20050	33.898	531	323	9	18	529	13	534	9.03e-83	268
MS.gene031183.t1	AT5G20890	33.656	517	324	7	20	530	14	517	6.74e-82	265
MS.gene031183.t1	AT3G11830	32.485	511	325	7	28	529	27	526	1.74e-76	251
MS.gene031183.t1	AT3G11830	32.485	511	323	8	28	529	27	524	1.02e-74	247
MS.gene031183.t1	AT3G03960	28.817	524	357	7	14	532	17	529	1.01e-71	239
MS.gene031183.t1	AT5G26360	31.311	511	340	7	25	530	20	524	2.55e-71	238
MS.gene031183.t1	AT5G16070	29.594	517	324	13	30	520	23	525	6.90e-53	188
MS.gene031183.t1	AT3G02530	28.794	514	333	11	30	520	23	526	3.28e-51	183

Find 119 sgRNAs with CRISPR-Local

Find 146 sgRNAs with CRISPR-GE

CRISPR-Local

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
GGGAAGATTGTGAAGATTTC+TGG	0.204894	3.3:+90232520	MS.gene031183:CDS
TGTGAAGATTTCTGGTATTA+AGG	0.209465	3.3:+90232528	MS.gene031183:CDS
TCTTGCTAAAGCTAAGATTT+TGG	0.234466	3.3:+90232360	MS.gene031183:CDS
GATTTCTGGTATTAAGGATA+TGG	0.239423	3.3:+90232534	MS.gene031183:CDS
ATCGTCTTTGCGTTTGTTAT+CGG	0.257624	3.3:-90231480	None:intergenic
AGGGATGATTAAGAAGATTA+AGG	0.275419	3.3:+90232264	MS.gene031183:CDS
GCATTCTCAGCAAGGGTATA+TGG	0.307049	3.3:-90232793	None:intergenic
CTTGTGGAAGAGCTTTCTCT+TGG	0.336541	3.3:+90232493	MS.gene031183:CDS
TCACGGAGATCCACCATTTC+CGG	0.339036	3.3:-90232004	None:intergenic
AGCAGCGGAGTCTTGAGATT+TGG	0.347607	3.3:-90231690	None:intergenic
CTCTGTTCTATATCTGTCTT+AGG	0.348731	3.3:-90232178	None:intergenic
TGTCAAGGCAATTGGGTGCT+TGG	0.354279	3.3:+90232704	MS.gene031183:CDS
ATCGGTGTAGGATTCGGTTT+TGG	0.362816	3.3:-90231462	None:intergenic
TCTCACCGCCATGGCTGTTC+CGG	0.362983	3.3:+90231847	MS.gene031183:CDS
GATAGAGCTGTCAAGGCAAT+TGG	0.370145	3.3:+90232696	MS.gene031183:CDS
TTGTGGAAGAGCTTTCTCTT+GGG	0.371995	3.3:+90232494	MS.gene031183:CDS
ATGATGCTTTGTGTGTTGTT+AGG	0.372583	3.3:+90232626	MS.gene031183:CDS
TTTGTTATCGGTGTAGGATT+CGG	0.375261	3.3:-90231468	None:intergenic
CATACCTTTGGGGCCGAGAC+TGG	0.392090	3.3:-90231555	None:intergenic
AATCTTAGCATTCTCCATTC+TGG	0.394765	3.3:-90232128	None:intergenic
GGAGGATCGGTGAGGGGCTG+CGG	0.401126	3.3:-90231441	None:intergenic
GTCAAGGCAATTGGGTGCTT+GGG	0.415529	3.3:+90232705	MS.gene031183:CDS
CGATCCCGCTAGGCCGGAAA+TGG	0.417675	3.3:+90231991	MS.gene031183:CDS
AGAACTGAATCAACAGCAAT+AGG	0.421556	3.3:-90231959	None:intergenic
AGCTCAGTAACAATTGCAAT+CGG	0.423035	3.3:-90232826	None:intergenic
TTTGTGTGTTGTTAGGTGTT+TGG	0.427682	3.3:+90232633	MS.gene031183:CDS
AAATGCTCAATATTAGCAAT+AGG	0.434996	3.3:-90232442	None:intergenic
ATTTCTGGTATTAAGGATAT+GGG	0.441434	3.3:+90232535	MS.gene031183:CDS
TTTGCGTTTGTTATCGGTGT+AGG	0.444094	3.3:-90231474	None:intergenic
TAGCACTTCGTTGAATAGTA+AGG	0.456781	3.3:+90231907	MS.gene031183:CDS
TCACGATCAGTGAGTTCAAC+CGG	0.461390	3.3:-90231866	None:intergenic
AACGCCGTTCGCACCAGTCT+CGG	0.462746	3.3:+90231542	MS.gene031183:CDS
ACCACAACTGTGCTTGTTCG+TGG	0.463002	3.3:+90232562	MS.gene031183:CDS
TACTGAGCTTGTGAAGGGCT+TGG	0.463815	3.3:+90232066	MS.gene031183:CDS
GTGATTATTCTCAGATGGAT+AGG	0.464278	3.3:+90232212	MS.gene031183:CDS
CAAGACTCCGCTGCTGGTGA+TGG	0.468281	3.3:+90231698	MS.gene031183:CDS
ATTAAGAAGATTAAGGCAAC+CGG	0.476085	3.3:+90232271	MS.gene031183:CDS
GAATGTGGTGCAGCCATTGC+TGG	0.481414	3.3:+90232927	MS.gene031183:CDS
GAAGAGCTTTCTCTTGGGGA+TGG	0.486289	3.3:+90232499	MS.gene031183:CDS
TCCACCATTTCCGGCCTAGC+GGG	0.488011	3.3:-90231995	None:intergenic
GCAATTGGGTGCTTGGGCTA+AGG	0.488468	3.3:+90232711	MS.gene031183:CDS
AGGCAAACAATTAAGAGTCT+TGG	0.489277	3.3:-90232422	None:intergenic
TGTCTCCTCCTTCTCTCTCA+TGG	0.491398	3.3:+90231764	MS.gene031183:CDS
TGTGGAAGAGCTTTCTCTTG+GGG	0.491536	3.3:+90232495	MS.gene031183:CDS
TATACCCTTGCTGAGAATGC+AGG	0.493053	3.3:+90232796	MS.gene031183:CDS
CAGTCTCGGCCCCAAAGGTA+TGG	0.493521	3.3:+90231556	MS.gene031183:CDS
AATCAACAACACATTACAAC+CGG	0.494792	3.3:-90232290	None:intergenic
CTGAGGAATCGTCATGCTAA+AGG	0.500255	3.3:+90232847	MS.gene031183:CDS
AACGGCGTTAGCGACGGAAC+GGG	0.500736	3.3:-90231528	None:intergenic
TGTCATCGATCCCGCTAGGC+CGG	0.501041	3.3:+90231985	MS.gene031183:CDS
TCAACACTGGAATCAATGTC+AGG	0.507995	3.3:+90232875	MS.gene031183:CDS
AAATCTCAAGACTCCGCTGC+TGG	0.512750	3.3:+90231692	MS.gene031183:CDS
ATAGAGCTGTCAAGGCAATT+GGG	0.513984	3.3:+90232697	MS.gene031183:CDS
GATTGCAGGTGGTGGTGCTC+CGG	0.514051	3.3:+90232672	MS.gene031183:CDS
TGCCTTGACAGCTCTATCTC+CGG	0.516484	3.3:-90232691	None:intergenic
GTTGGTGATGATAACTTCGT+TGG	0.525584	3.3:-90231600	None:intergenic
GGAACGGGCGGCGATGATGT+TGG	0.529719	3.3:-90231513	None:intergenic
TCCCGCTAGGCCGGAAATGG+TGG	0.531201	3.3:+90231994	MS.gene031183:CDS
AAGAGCTTTCTCTTGGGGAT+GGG	0.531234	3.3:+90232500	MS.gene031183:CDS
AACTTGCATCTTGTTGAGGA+TGG	0.540091	3.3:-90231633	None:intergenic
GGTTAGTGATTATTCTCAGA+TGG	0.543811	3.3:+90232207	MS.gene031183:CDS
ACATTTCTCGAGAAGTGCTC+CGG	0.552049	3.3:-90231744	None:intergenic
CGGCGATGATGTTGGATTGA+CGG	0.559941	3.3:-90231505	None:intergenic
GATGATAACTTCGTTGGAAG+AGG	0.560445	3.3:-90231594	None:intergenic
CTCCGGAGATAGAGCTGTCA+AGG	0.563162	3.3:+90232689	MS.gene031183:CDS
GAACGGCGTTAGCGACGGAA+CGG	0.564350	3.3:-90231529	None:intergenic
GGGGCCGAGACTGGTGCGAA+CGG	0.565754	3.3:-90231546	None:intergenic
AGTGAATCAGAGATAACAGT+AGG	0.569565	3.3:-90231794	None:intergenic
AAGGTTAGTCATGCTGCTGG+TGG	0.570337	3.3:+90232100	MS.gene031183:CDS
GGCGATGACAACAACGGTGG+TGG	0.571260	3.3:-90231723	None:intergenic
CGCACCAGTCTCGGCCCCAA+AGG	0.572245	3.3:+90231551	MS.gene031183:CDS
CCTCACACACTCTGTTGCCA+AGG	0.573445	3.3:-90232968	None:intergenic
TGGAACAACTTCAAGTGCCT+CGG	0.574575	3.3:-90232773	None:intergenic
GCTCAGTAACAATTGCAATC+GGG	0.575791	3.3:-90232825	None:intergenic
TCTCTGTCATCGATCCCGCT+AGG	0.576821	3.3:+90231981	MS.gene031183:CDS
ACCACCGTTGTTGTCATCGC+CGG	0.577312	3.3:+90231725	MS.gene031183:CDS
GAAGAACTTGCATCTTGTTG+AGG	0.580248	3.3:-90231637	None:intergenic
GGCGTTAGCGACGGAACGGG+CGG	0.589560	3.3:-90231525	None:intergenic
GTTGGGTTATGCTGATCTTG+TGG	0.590393	3.3:+90232477	MS.gene031183:CDS
GGTGGTTCCATCACCAGCAG+CGG	0.591723	3.3:-90231705	None:intergenic
GAATACCATGAGAGAGAAGG+AGG	0.591885	3.3:-90231769	None:intergenic
GCACTTGTGCTAACCAGCAA+TGG	0.592202	3.3:-90232940	None:intergenic
TCAAACCTGCATTCTCAGCA+AGG	0.593910	3.3:-90232801	None:intergenic
GAGTTCAACCGGAACAGCCA+TGG	0.594130	3.3:-90231855	None:intergenic
CTGTATTCGTGCATTTGCCG+AGG	0.594695	3.3:+90232756	MS.gene031183:CDS
GGTGCGAACGGCGTTAGCGA+CGG	0.594895	3.3:-90231534	None:intergenic
TGATGATACTGAGCTTGTGA+AGG	0.595971	3.3:+90232060	MS.gene031183:CDS
TTAGCATTCTCCATTCTGGT+AGG	0.596904	3.3:-90232124	None:intergenic
ACACTCTGTTGCCAAGGTGA+TGG	0.598855	3.3:-90232962	None:intergenic
TGCTGGTGGACCTACCAGAA+TGG	0.600235	3.3:+90232114	MS.gene031183:CDS
GCTAAAGGTGAGATCAACAC+TGG	0.604820	3.3:+90232862	MS.gene031183:CDS
TGTTCTATATCTGTCTTAGG+AGG	0.605667	3.3:-90232175	None:intergenic
GGTGAATACCATGAGAGAGA+AGG	0.606764	3.3:-90231772	None:intergenic
GAGGATGGTAGCGCCGTCGT+TGG	0.607730	3.3:-90231618	None:intergenic
GATGATACTGAGCTTGTGAA+GGG	0.610892	3.3:+90232061	MS.gene031183:CDS
TTGCAATTGTTACTGAGCTG+AGG	0.612866	3.3:+90232830	MS.gene031183:CDS
TCCACGAACAAGCACAGTTG+TGG	0.612984	3.3:-90232563	None:intergenic
GCTGCACCACATTCTCCTCA+AGG	0.613760	3.3:-90232918	None:intergenic
TAGCACAAGTGCCATCACCT+TGG	0.618089	3.3:+90232951	MS.gene031183:CDS
TCAAATTACAAACATCCTTG+AGG	0.621720	3.3:+90232903	MS.gene031183:CDS
AAGAAGGTTAGTCATGCTGC+TGG	0.624743	3.3:+90232097	MS.gene031183:CDS
ACTGGAATCAATGTCAGGAA+AGG	0.625427	3.3:+90232880	MS.gene031183:CDS
AAACATCCTTGAGGAGAATG+TGG	0.628033	3.3:+90232912	MS.gene031183:CDS
TCTTAACAATCTTCACATCA+CGG	0.628490	3.3:-90232021	None:intergenic
TGTTGATGTTCTCACCGCCA+TGG	0.628840	3.3:+90231838	MS.gene031183:CDS
AACATCAACAGCTTTAACAG+AGG	0.629483	3.3:-90231825	None:intergenic
GTGAAGATTGTTAAGAAGCT+CGG	0.630785	3.3:+90232028	MS.gene031183:CDS
TTAGGTGTTTGGTTGCCAAG+AGG	0.631658	3.3:+90232644	MS.gene031183:CDS
ATCCACCATTTCCGGCCTAG+CGG	0.644279	3.3:-90231996	None:intergenic
GTGAATCAGAGATAACAGTA+GGG	0.649997	3.3:-90231793	None:intergenic
CCTTGGCAACAGAGTGTGTG+AGG	0.652881	3.3:+90232968	MS.gene031183:CDS
CAAACCTGCATTCTCAGCAA+GGG	0.653006	3.3:-90232800	None:intergenic
AGATATAGAACAGAGTATTG+TGG	0.666081	3.3:+90232186	MS.gene031183:CDS
GAAGTTATCATCACCAACGA+CGG	0.680075	3.3:+90231605	MS.gene031183:CDS
TTCAACCGGAACAGCCATGG+CGG	0.690129	3.3:-90231852	None:intergenic
AAGATTGTTAAGAAGCTCGG+TGG	0.695277	3.3:+90232031	MS.gene031183:CDS
TGCTCCGGCGATGACAACAA+CGG	0.714797	3.3:-90231729	None:intergenic
TCCGGCGATGACAACAACGG+TGG	0.732056	3.3:-90231726	None:intergenic
TTGATGATATTGTAACTGTG+AGG	0.759737	3.3:+90233004	MS.gene031183:CDS

CRISPR-GE

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
!	AAATGCTCAATATTAGCAAT+AGG	-	chr3.3:90232445-90232464	None:intergenic	25.0%
!!!	ATTTCTGGTATTAAGGATAT+GGG	+	chr3.3:90232535-90232554	MS.gene031183:CDS	25.0%
	AATCAACAACACATTACAAC+CGG	-	chr3.3:90232293-90232312	None:intergenic	30.0%
	AGGGATGATTAAGAAGATTA+AGG	+	chr3.3:90232264-90232283	MS.gene031183:CDS	30.0%
	ATTAAGAAGATTAAGGCAAC+CGG	+	chr3.3:90232271-90232290	MS.gene031183:CDS	30.0%
	TCAAATTACAAACATCCTTG+AGG	+	chr3.3:90232903-90232922	MS.gene031183:CDS	30.0%
	TCTTAACAATCTTCACATCA+CGG	-	chr3.3:90232024-90232043	None:intergenic	30.0%
!	AAGAGAGGAGTTACATTTTA+GGG	+	chr3.3:90232245-90232264	MS.gene031183:CDS	30.0%
!	ATCATTTTGTCCATACCTTT+GGG	-	chr3.3:90231569-90231588	None:intergenic	30.0%
!	TCTTGCTAAAGCTAAGATTT+TGG	+	chr3.3:90232360-90232379	MS.gene031183:CDS	30.0%
!	TTGATGATATTGTAACTGTG+AGG	+	chr3.3:90233004-90233023	MS.gene031183:CDS	30.0%
!!	AGATATAGAACAGAGTATTG+TGG	+	chr3.3:90232186-90232205	MS.gene031183:CDS	30.0%
!!	GATTTCTGGTATTAAGGATA+TGG	+	chr3.3:90232534-90232553	MS.gene031183:CDS	30.0%
!!	TGTGAAGATTTCTGGTATTA+AGG	+	chr3.3:90232528-90232547	MS.gene031183:CDS	30.0%
	AATCTTAGCATTCTCCATTC+TGG	-	chr3.3:90232131-90232150	None:intergenic	35.0%
	AGAACTGAATCAACAGCAAT+AGG	-	chr3.3:90231962-90231981	None:intergenic	35.0%
	AGCTCAGTAACAATTGCAAT+CGG	-	chr3.3:90232829-90232848	None:intergenic	35.0%
	AGGCAAACAATTAAGAGTCT+TGG	-	chr3.3:90232425-90232444	None:intergenic	35.0%
	AGTGAATCAGAGATAACAGT+AGG	-	chr3.3:90231797-90231816	None:intergenic	35.0%
	CTCTGTTCTATATCTGTCTT+AGG	-	chr3.3:90232181-90232200	None:intergenic	35.0%
	GGTTAGTGATTATTCTCAGA+TGG	+	chr3.3:90232207-90232226	MS.gene031183:CDS	35.0%
	GTGAAGATTGTTAAGAAGCT+CGG	+	chr3.3:90232028-90232047	MS.gene031183:CDS	35.0%
	GTGAATCAGAGATAACAGTA+GGG	-	chr3.3:90231796-90231815	None:intergenic	35.0%
	GTGATTATTCTCAGATGGAT+AGG	+	chr3.3:90232212-90232231	MS.gene031183:CDS	35.0%
	TAGCACTTCGTTGAATAGTA+AGG	+	chr3.3:90231907-90231926	MS.gene031183:CDS	35.0%
	TGTTCTATATCTGTCTTAGG+AGG	-	chr3.3:90232178-90232197	None:intergenic	35.0%
!	AACATCAACAGCTTTAACAG+AGG	-	chr3.3:90231828-90231847	None:intergenic	35.0%
!	ATGATGCTTTGTGTGTTGTT+AGG	+	chr3.3:90232626-90232645	MS.gene031183:CDS	35.0%
!	GAAGAGAGGAGTTACATTTT+AGG	+	chr3.3:90232244-90232263	MS.gene031183:CDS	35.0%
!	GATCATTTTGTCCATACCTT+TGG	-	chr3.3:90231570-90231589	None:intergenic	35.0%
!	TCAGATGGATAGGATTTTGA+AGG	+	chr3.3:90232222-90232241	MS.gene031183:CDS	35.0%
!	TCATTTTGTCCATACCTTTG+GGG	-	chr3.3:90231568-90231587	None:intergenic	35.0%
!	TTTGTGTGTTGTTAGGTGTT+TGG	+	chr3.3:90232633-90232652	MS.gene031183:CDS	35.0%
!	TTTGTTATCGGTGTAGGATT+CGG	-	chr3.3:90231471-90231490	None:intergenic	35.0%
!!	ATAGGATTTTGAAGGAAGAG+AGG	+	chr3.3:90232230-90232249	MS.gene031183:CDS	35.0%
!!	ATCGTCTTTGCGTTTGTTAT+CGG	-	chr3.3:90231483-90231502	None:intergenic	35.0%
	AAACATCCTTGAGGAGAATG+TGG	+	chr3.3:90232912-90232931	MS.gene031183:CDS	40.0%
	AACTTGCATCTTGTTGAGGA+TGG	-	chr3.3:90231636-90231655	None:intergenic	40.0%
	AAGATTGTTAAGAAGCTCGG+TGG	+	chr3.3:90232031-90232050	MS.gene031183:CDS	40.0%
	ACCTGCAATCAAAAACCTCT+TGG	-	chr3.3:90232662-90232681	None:intergenic	40.0%
	ACTGGAATCAATGTCAGGAA+AGG	+	chr3.3:90232880-90232899	MS.gene031183:CDS	40.0%
	ATAGAGCTGTCAAGGCAATT+GGG	+	chr3.3:90232697-90232716	MS.gene031183:CDS	40.0%
	GAAGAACTTGCATCTTGTTG+AGG	-	chr3.3:90231640-90231659	None:intergenic	40.0%
	GAAGTTATCATCACCAACGA+CGG	+	chr3.3:90231605-90231624	MS.gene031183:CDS	40.0%
	GATGATAACTTCGTTGGAAG+AGG	-	chr3.3:90231597-90231616	None:intergenic	40.0%
	GATGATACTGAGCTTGTGAA+GGG	+	chr3.3:90232061-90232080	MS.gene031183:CDS	40.0%
	GCTCAGTAACAATTGCAATC+GGG	-	chr3.3:90232828-90232847	None:intergenic	40.0%
	GGGAAGATTGTGAAGATTTC+TGG	+	chr3.3:90232520-90232539	MS.gene031183:CDS	40.0%
	TCAACACTGGAATCAATGTC+AGG	+	chr3.3:90232875-90232894	MS.gene031183:CDS	40.0%
	TGATGATACTGAGCTTGTGA+AGG	+	chr3.3:90232060-90232079	MS.gene031183:CDS	40.0%
	TTAGCATTCTCCATTCTGGT+AGG	-	chr3.3:90232127-90232146	None:intergenic	40.0%
	TTGCAATTGTTACTGAGCTG+AGG	+	chr3.3:90232830-90232849	MS.gene031183:CDS	40.0%
	TTGTGGAAGAGCTTTCTCTT+GGG	+	chr3.3:90232494-90232513	MS.gene031183:CDS	40.0%
!	CATTTTCGTGCTGAGAAGTT+GGG	+	chr3.3:90232460-90232479	MS.gene031183:CDS	40.0%
!	GAGTTCAACGAGCATTTTAG+CGG	-	chr3.3:90231669-90231688	None:intergenic	40.0%
!!	AAGAGGTTTTTGATTGCAGG+TGG	+	chr3.3:90232661-90232680	MS.gene031183:CDS	40.0%
!!	GGGCTTGGTTTTTGATAAGA+AGG	+	chr3.3:90232081-90232100	MS.gene031183:CDS	40.0%
!!	GTTGGTGATGATAACTTCGT+TGG	-	chr3.3:90231603-90231622	None:intergenic	40.0%
!!	TTTGCGTTTGTTATCGGTGT+AGG	-	chr3.3:90231477-90231496	None:intergenic	40.0%
	AAGAGCTTTCTCTTGGGGAT+GGG	+	chr3.3:90232500-90232519	MS.gene031183:CDS	45.0%
	CAAACCTGCATTCTCAGCAA+GGG	-	chr3.3:90232803-90232822	None:intergenic	45.0%
	CTGAGGAATCGTCATGCTAA+AGG	+	chr3.3:90232847-90232866	MS.gene031183:CDS	45.0%
	CTTGTGGAAGAGCTTTCTCT+TGG	+	chr3.3:90232493-90232512	MS.gene031183:CDS	45.0%
	GAATACCATGAGAGAGAAGG+AGG	-	chr3.3:90231772-90231791	None:intergenic	45.0%
	GATAGAGCTGTCAAGGCAAT+TGG	+	chr3.3:90232696-90232715	MS.gene031183:CDS	45.0%
	GCTAAAGGTGAGATCAACAC+TGG	+	chr3.3:90232862-90232881	MS.gene031183:CDS	45.0%
	GGTGAATACCATGAGAGAGA+AGG	-	chr3.3:90231775-90231794	None:intergenic	45.0%
	GTTGGGTTATGCTGATCTTG+TGG	+	chr3.3:90232477-90232496	MS.gene031183:CDS	45.0%
	TATACCCTTGCTGAGAATGC+AGG	+	chr3.3:90232796-90232815	MS.gene031183:CDS	45.0%
	TCAAACCTGCATTCTCAGCA+AGG	-	chr3.3:90232804-90232823	None:intergenic	45.0%
	TCACGATCAGTGAGTTCAAC+CGG	-	chr3.3:90231869-90231888	None:intergenic	45.0%
	TGGAACAACTTCAAGTGCCT+CGG	-	chr3.3:90232776-90232795	None:intergenic	45.0%
	TGTGGAAGAGCTTTCTCTTG+GGG	+	chr3.3:90232495-90232514	MS.gene031183:CDS	45.0%
	TTAGGTGTTTGGTTGCCAAG+AGG	+	chr3.3:90232644-90232663	MS.gene031183:CDS	45.0%
!	AAGAAGGTTAGTCATGCTGC+TGG	+	chr3.3:90232097-90232116	MS.gene031183:CDS	45.0%
!	AAGGTTTTGCATGGGATGGA+GGG	+	chr3.3:90232730-90232749	MS.gene031183:CDS	45.0%
!	CTTGGGCTAAGGTTTTGCAT+GGG	+	chr3.3:90232722-90232741	MS.gene031183:CDS	45.0%
!	GCATTCTCAGCAAGGGTATA+TGG	-	chr3.3:90232796-90232815	None:intergenic	45.0%
!	GCATTTTCGTGCTGAGAAGT+TGG	+	chr3.3:90232459-90232478	MS.gene031183:CDS	45.0%
!	TAAGGTTTTGCATGGGATGG+AGG	+	chr3.3:90232729-90232748	MS.gene031183:CDS	45.0%
!!	ACATTTCTCGAGAAGTGCTC+CGG	-	chr3.3:90231747-90231766	None:intergenic	45.0%
!!	AGGTTTTTGATTGCAGGTGG+TGG	+	chr3.3:90232664-90232683	MS.gene031183:CDS	45.0%
!!	ATCGGTGTAGGATTCGGTTT+TGG	-	chr3.3:90231465-90231484	None:intergenic	45.0%
!!	GCCAAGAGGTTTTTGATTGC+AGG	+	chr3.3:90232658-90232677	MS.gene031183:CDS	45.0%
!!	TTCAACGAGCATTTTAGCGG+CGG	-	chr3.3:90231666-90231685	None:intergenic	45.0%
!!!	AGGATTCGGTTTTGGAGGAT+CGG	-	chr3.3:90231457-90231476	None:intergenic	45.0%
	AAATCTCAAGACTCCGCTGC+TGG	+	chr3.3:90231692-90231711	MS.gene031183:CDS	50.0%
	ACACTCTGTTGCCAAGGTGA+TGG	-	chr3.3:90232965-90232984	None:intergenic	50.0%
	ACCACAACTGTGCTTGTTCG+TGG	+	chr3.3:90232562-90232581	MS.gene031183:CDS	50.0%
	AGCAGCGGAGTCTTGAGATT+TGG	-	chr3.3:90231693-90231712	None:intergenic	50.0%
	CGGCGATGATGTTGGATTGA+CGG	-	chr3.3:90231508-90231527	None:intergenic	50.0%
	CTGTATTCGTGCATTTGCCG+AGG	+	chr3.3:90232756-90232775	MS.gene031183:CDS	50.0%
	GAAGAGCTTTCTCTTGGGGA+TGG	+	chr3.3:90232499-90232518	MS.gene031183:CDS	50.0%
	GCACTTGTGCTAACCAGCAA+TGG	-	chr3.3:90232943-90232962	None:intergenic	50.0%
	GTCAAGGCAATTGGGTGCTT+GGG	+	chr3.3:90232705-90232724	MS.gene031183:CDS	50.0%
	TACTGAGCTTGTGAAGGGCT+TGG	+	chr3.3:90232066-90232085	MS.gene031183:CDS	50.0%
	TAGCACAAGTGCCATCACCT+TGG	+	chr3.3:90232951-90232970	MS.gene031183:CDS	50.0%
	TCACGGAGATCCACCATTTC+CGG	-	chr3.3:90232007-90232026	None:intergenic	50.0%
	TCCACGAACAAGCACAGTTG+TGG	-	chr3.3:90232566-90232585	None:intergenic	50.0%
	TGCCTTGACAGCTCTATCTC+CGG	-	chr3.3:90232694-90232713	None:intergenic	50.0%
	TGTCAAGGCAATTGGGTGCT+TGG	+	chr3.3:90232704-90232723	MS.gene031183:CDS	50.0%
	TGTCTCCTCCTTCTCTCTCA+TGG	+	chr3.3:90231764-90231783	MS.gene031183:CDS	50.0%
	TGTTGATGTTCTCACCGCCA+TGG	+	chr3.3:90231838-90231857	MS.gene031183:CDS	50.0%
!	AAGGTTAGTCATGCTGCTGG+TGG	+	chr3.3:90232100-90232119	MS.gene031183:CDS	50.0%
!	GCTTGGGCTAAGGTTTTGCA+TGG	+	chr3.3:90232721-90232740	MS.gene031183:CDS	50.0%
!	GGCTAAGGTTTTGCATGGGA+TGG	+	chr3.3:90232726-90232745	MS.gene031183:CDS	50.0%
!!	GGTGTAGGATTCGGTTTTGG+AGG	-	chr3.3:90231462-90231481	None:intergenic	50.0%
!!	TCAACGAGCATTTTAGCGGC+GGG	-	chr3.3:90231665-90231684	None:intergenic	50.0%
	ACCACCGTTGTTGTCATCGC+CGG	+	chr3.3:90231725-90231744	MS.gene031183:CDS	55.0%
	ATCCACCATTTCCGGCCTAG+CGG	-	chr3.3:90231999-90232018	None:intergenic	55.0%
	CCTCACACACTCTGTTGCCA+AGG	-	chr3.3:90232971-90232990	None:intergenic	55.0%
	CCTTGGCAACAGAGTGTGTG+AGG	+	chr3.3:90232968-90232987	MS.gene031183:CDS	55.0%
	CTCCGGAGATAGAGCTGTCA+AGG	+	chr3.3:90232689-90232708	MS.gene031183:CDS	55.0%
	GAATGTGGTGCAGCCATTGC+TGG	+	chr3.3:90232927-90232946	MS.gene031183:CDS	55.0%
	GAGTTCAACCGGAACAGCCA+TGG	-	chr3.3:90231858-90231877	None:intergenic	55.0%
	GCAATTGGGTGCTTGGGCTA+AGG	+	chr3.3:90232711-90232730	MS.gene031183:CDS	55.0%
	GCTGCACCACATTCTCCTCA+AGG	-	chr3.3:90232921-90232940	None:intergenic	55.0%
	TCTCTGTCATCGATCCCGCT+AGG	+	chr3.3:90231981-90232000	MS.gene031183:CDS	55.0%
	TGCTCCGGCGATGACAACAA+CGG	-	chr3.3:90231732-90231751	None:intergenic	55.0%
	TTCAACCGGAACAGCCATGG+CGG	-	chr3.3:90231855-90231874	None:intergenic	55.0%
!	TGCTGGTGGACCTACCAGAA+TGG	+	chr3.3:90232114-90232133	MS.gene031183:CDS	55.0%
!!!	CGGTTTTGGAGGATCGGTGA+GGG	-	chr3.3:90231451-90231470	None:intergenic	55.0%
!!!	GGTTTTGGAGGATCGGTGAG+GGG	-	chr3.3:90231450-90231469	None:intergenic	55.0%
!!!	TCGGTTTTGGAGGATCGGTG+AGG	-	chr3.3:90231452-90231471	None:intergenic	55.0%
	AACGCCGTTCGCACCAGTCT+CGG	+	chr3.3:90231542-90231561	MS.gene031183:CDS	60.0%
	AACGGCGTTAGCGACGGAAC+GGG	-	chr3.3:90231531-90231550	None:intergenic	60.0%
	CAAGACTCCGCTGCTGGTGA+TGG	+	chr3.3:90231698-90231717	MS.gene031183:CDS	60.0%
	CAGTCTCGGCCCCAAAGGTA+TGG	+	chr3.3:90231556-90231575	MS.gene031183:CDS	60.0%
	GAACGGCGTTAGCGACGGAA+CGG	-	chr3.3:90231532-90231551	None:intergenic	60.0%
	GGCGATGACAACAACGGTGG+TGG	-	chr3.3:90231726-90231745	None:intergenic	60.0%
	GGTGGTTCCATCACCAGCAG+CGG	-	chr3.3:90231708-90231727	None:intergenic	60.0%
	TCCACCATTTCCGGCCTAGC+GGG	-	chr3.3:90231998-90232017	None:intergenic	60.0%
	TCCGGCGATGACAACAACGG+TGG	-	chr3.3:90231729-90231748	None:intergenic	60.0%
	TCTCACCGCCATGGCTGTTC+CGG	+	chr3.3:90231847-90231866	MS.gene031183:CDS	60.0%
	TGTCATCGATCCCGCTAGGC+CGG	+	chr3.3:90231985-90232004	MS.gene031183:CDS	60.0%
!	GATTGCAGGTGGTGGTGCTC+CGG	+	chr3.3:90232672-90232691	MS.gene031183:CDS	60.0%
!!	CATACCTTTGGGGCCGAGAC+TGG	-	chr3.3:90231558-90231577	None:intergenic	60.0%
	CGATCCCGCTAGGCCGGAAA+TGG	+	chr3.3:90231991-90232010	MS.gene031183:CDS	65.0%
	GGAACGGGCGGCGATGATGT+TGG	-	chr3.3:90231516-90231535	None:intergenic	65.0%
	GGTGCGAACGGCGTTAGCGA+CGG	-	chr3.3:90231537-90231556	None:intergenic	65.0%
	TCCCGCTAGGCCGGAAATGG+TGG	+	chr3.3:90231994-90232013	MS.gene031183:CDS	65.0%
!	GAGGATGGTAGCGCCGTCGT+TGG	-	chr3.3:90231621-90231640	None:intergenic	65.0%
	CGCACCAGTCTCGGCCCCAA+AGG	+	chr3.3:90231551-90231570	MS.gene031183:CDS	70.0%
	GGAGGATCGGTGAGGGGCTG+CGG	-	chr3.3:90231444-90231463	None:intergenic	70.0%
	GGCGTTAGCGACGGAACGGG+CGG	-	chr3.3:90231528-90231547	None:intergenic	70.0%
	GGGGCCGAGACTGGTGCGAA+CGG	-	chr3.3:90231549-90231568	None:intergenic	70.0%

Chromosome	Type	Strat	End	Strand	Name
chr3.3	gene	90231431	90233029	90231431	ID=MS.gene031183
chr3.3	mRNA	90231431	90233029	90231431	ID=MS.gene031183.t1;Parent=MS.gene031183
chr3.3	exon	90231431	90233029	90231431	ID=MS.gene031183.t1.exon1;Parent=MS.gene031183.t1
chr3.3	CDS	90231431	90233029	90231431	ID=cds.MS.gene031183.t1;Parent=MS.gene031183.t1

Gene Sequence

>MS.gene031183

ATGGCAACAACCGCAGCCCCTCACCGATCCTCCAAAACCGAATCCTACACCGATAACAAACGCAAAGACGATGTCCGTCAATCCAACATCATCGCCGCCCGTTCCGTCGCTAACGCCGTTCGCACCAGTCTCGGCCCCAAAGGTATGGACAAAATGATCTCAACCTCTTCCAACGAAGTTATCATCACCAACGACGGCGCTACCATCCTCAACAAGATGCAAGTTCTTCAACCCGCCGCTAAAATGCTCGTTGAACTCTCCAAATCTCAAGACTCCGCTGCTGGTGATGGAACCACCACCGTTGTTGTCATCGCCGGAGCACTTCTCGAGAAATGTCTCCTCCTTCTCTCTCATGGTATTCACCCTACTGTTATCTCTGATTCACTTCACAAAGCCTCTGTTAAAGCTGTTGATGTTCTCACCGCCATGGCTGTTCCGGTTGAACTCACTGATCGTGATTCACTCGTGAAATCTGCTAGCACTTCGTTGAATAGTAAGGTTGTTAGTCAATACTCTTCGCTTCTCGCTCCTATTGCTGTTGATTCAGTTCTCTCTGTCATCGATCCCGCTAGGCCGGAAATGGTGGATCTCCGTGATGTGAAGATTGTTAAGAAGCTCGGTGGAACAGTTGATGATACTGAGCTTGTGAAGGGCTTGGTTTTTGATAAGAAGGTTAGTCATGCTGCTGGTGGACCTACCAGAATGGAGAATGCTAAGATTGCTGTGATTCAGTTTCAAATTTCGCCTCCTAAGACAGATATAGAACAGAGTATTGTGGTTAGTGATTATTCTCAGATGGATAGGATTTTGAAGGAAGAGAGGAGTTACATTTTAGGGATGATTAAGAAGATTAAGGCAACCGGTTGTAATGTGTTGTTGATTCAGAAGAGTATTTTGAGAGATGCTGTTACTGATTTGTCTTTGCATTATCTTGCTAAAGCTAAGATTTTGGTGATTAAAGATGTTGAGCGTGACGAGATTGAGTTCATTACCAAGACTCTTAATTGTTTGCCTATTGCTAATATTGAGCATTTTCGTGCTGAGAAGTTGGGTTATGCTGATCTTGTGGAAGAGCTTTCTCTTGGGGATGGGAAGATTGTGAAGATTTCTGGTATTAAGGATATGGGAAAGACCACAACTGTGCTTGTTCGTGGATCTAATTTGCTTGTGCTCGATGAAGCTGAGCGAAGTCTGCATGATGCTTTGTGTGTTGTTAGGTGTTTGGTTGCCAAGAGGTTTTTGATTGCAGGTGGTGGTGCTCCGGAGATAGAGCTGTCAAGGCAATTGGGTGCTTGGGCTAAGGTTTTGCATGGGATGGAGGGTTACTGTATTCGTGCATTTGCCGAGGCACTTGAAGTTGTTCCATATACCCTTGCTGAGAATGCAGGTTTGAACCCGATTGCAATTGTTACTGAGCTGAGGAATCGTCATGCTAAAGGTGAGATCAACACTGGAATCAATGTCAGGAAAGGTCAAATTACAAACATCCTTGAGGAGAATGTGGTGCAGCCATTGCTGGTTAGCACAAGTGCCATCACCTTGGCAACAGAGTGTGTGAGGATGATTTTGAAGATTGATGATATTGTAACTGTGAGGTAG

Protein sequence

>MS.gene031183.t1

MATTAAPHRSSKTESYTDNKRKDDVRQSNIIAARSVANAVRTSLGPKGMDKMISTSSNEVIITNDGATILNKMQVLQPAAKMLVELSKSQDSAAGDGTTTVVVIAGALLEKCLLLLSHGIHPTVISDSLHKASVKAVDVLTAMAVPVELTDRDSLVKSASTSLNSKVVSQYSSLLAPIAVDSVLSVIDPARPEMVDLRDVKIVKKLGGTVDDTELVKGLVFDKKVSHAAGGPTRMENAKIAVIQFQISPPKTDIEQSIVVSDYSQMDRILKEERSYILGMIKKIKATGCNVLLIQKSILRDAVTDLSLHYLAKAKILVIKDVERDEIEFITKTLNCLPIANIEHFRAEKLGYADLVEELSLGDGKIVKISGIKDMGKTTTVLVRGSNLLVLDEAERSLHDALCVVRCLVAKRFLIAGGGAPEIELSRQLGAWAKVLHGMEGYCIRAFAEALEVVPYTLAENAGLNPIAIVTELRNRHAKGEINTGINVRKGQITNILEENVVQPLLVSTSAITLATECVRMILKIDDIVTVR