AlfalfaGEDB | MS.gene031184

M. sativa cultivar XinJiangDaYe / MS.gene031184

KEGG: K09496
GO: GO:0000166 GO:0003674 GO:0005488 GO:0005515 GO:0005524 GO:0006457 GO:0008144 GO:0008150 GO:0009987 GO:0017076 GO:0030554 GO:0032553 GO:0032555 GO:0032559 GO:0035639 GO:0036094 GO:0043167 GO:0043168 GO:0051082 GO:0097159 GO:0097367 GO:1901265 GO:1901363
PFAM: PF00118.27

Nr:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene031184.t1	XP_013461938.1	99.8	532	1	0	1	532	1	532	1.80E-278	968

Swissprot:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene031184.t1	Q9LV21	85.8	536	72	1	1	532	1	536	5.5e-252	871.3

Trembl:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene031184.t1	A0A072V3N8	99.8	532	1	0	1	532	1	532	1.3e-278	968.0

TFs/TRs:

Gene ID	Type	Classification

Protein Kinases:

Gene ID	Type	Classification

Network:

Co-expression Network:

Gene1	Gene2	correlation coefficient	p_value	FDR

PPI:

Gene1	Gene2	Type
MS.gene39837	MS.gene031184	PPI
MS.gene031184	MS.gene47857	PPI
MS.gene75537	MS.gene031184	PPI
MS.gene002442	MS.gene031184	PPI
MS.gene031184	MS.gene025228	PPI
MS.gene64440	MS.gene031184	PPI
MS.gene031184	MS.gene047578	PPI
MS.gene042598	MS.gene031184	PPI
MS.gene77617	MS.gene031184	PPI
MS.gene031184	MS.gene98781	PPI
MS.gene031184	MS.gene62993	PPI
MS.gene058828	MS.gene031184	PPI
MS.gene031184	MS.gene045185	PPI
MS.gene031184	MS.gene66973	PPI
MS.gene031184	MS.gene058827	PPI
MS.gene031184	MS.gene87976	PPI
MS.gene37845	MS.gene031184	PPI
MS.gene069339	MS.gene031184	PPI
MS.gene045180	MS.gene031184	PPI
MS.gene031184	MS.gene91774	PPI
MS.gene031184	MS.gene01091	PPI
MS.gene031184	MS.gene99406	PPI
MS.gene031184	MS.gene067072	PPI
MS.gene031184	MS.gene97876	PPI
MS.gene031184	MS.gene77306	PPI
MS.gene031184	MS.gene27902	PPI
MS.gene031184	MS.gene050877	PPI
MS.gene061963	MS.gene031184	PPI
MS.gene026610	MS.gene031184	PPI
MS.gene066566	MS.gene031184	PPI
MS.gene031184	MS.gene59146	PPI
MS.gene78457	MS.gene031184	PPI
MS.gene031184	MS.gene83135	PPI
MS.gene031184	MS.gene92155	PPI
MS.gene037185	MS.gene031184	PPI
MS.gene031184	MS.gene01425	PPI
MS.gene031184	MS.gene073967	PPI
MS.gene031184	MS.gene016844	PPI
MS.gene039012	MS.gene031184	PPI

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene031184.t1	MTR_3g109925	99.812	532	1	0	1	532	1	532	0.0	1070
MS.gene031184.t1	MTR_3g109925	85.150	532	22	5	1	532	1	475	0.0	877
MS.gene031184.t1	MTR_8g105970	73.740	377	39	7	124	495	32	353	0.0	520
MS.gene031184.t1	MTR_3g086330	37.500	512	307	7	24	530	28	531	1.62e-103	321
MS.gene031184.t1	MTR_7g113470	34.816	517	318	7	20	530	14	517	3.12e-89	284
MS.gene031184.t1	MTR_7g067470	35.029	511	313	7	26	530	20	517	1.79e-88	282
MS.gene031184.t1	MTR_8g088270	34.476	525	316	9	24	529	19	534	1.03e-84	273
MS.gene031184.t1	MTR_5g087560	32.877	511	323	8	28	529	27	526	2.59e-79	259
MS.gene031184.t1	MTR_2g013540	30.528	511	344	7	25	530	20	524	7.56e-73	242
MS.gene031184.t1	MTR_6g032870	28.571	511	351	5	23	529	20	520	7.51e-69	231
MS.gene031184.t1	MTR_1g030650	27.626	514	358	5	23	532	23	526	1.49e-68	230
MS.gene031184.t1	MTR_7g406870	27.519	516	347	10	29	529	22	525	1.04e-50	182
MS.gene031184.t1	MTR_2g013540	28.534	382	259	8	154	530	3	375	3.07e-35	137
MS.gene031184.t1	MTR_4g057020	57.658	111	13	1	294	404	54	130	9.03e-29	111
MS.gene031184.t1	MTR_7g406870	25.647	425	289	10	120	529	1	413	1.24e-27	115
MS.gene031184.t1	MTR_8g010750	25.366	410	206	12	27	383	30	392	3.81e-14	75.1

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene031184.t1	AT3G18190	87.873	536	61	1	1	532	1	536	0.0	964
MS.gene031184.t1	AT1G24510	38.447	515	304	7	21	530	25	531	2.13e-104	323
MS.gene031184.t1	AT1G24510	37.553	474	283	7	62	530	13	478	1.79e-89	283
MS.gene031184.t1	AT1G24510	36.933	463	279	7	73	530	1	455	9.21e-84	268
MS.gene031184.t1	AT3G20050	33.898	531	323	9	18	529	13	534	9.03e-83	268
MS.gene031184.t1	AT5G20890	33.656	517	324	7	20	530	14	517	6.74e-82	265
MS.gene031184.t1	AT3G11830	32.485	511	325	7	28	529	27	526	1.74e-76	251
MS.gene031184.t1	AT3G11830	32.485	511	323	8	28	529	27	524	1.02e-74	247
MS.gene031184.t1	AT3G03960	28.817	524	357	7	14	532	17	529	1.01e-71	239
MS.gene031184.t1	AT5G26360	31.311	511	340	7	25	530	20	524	2.55e-71	238
MS.gene031184.t1	AT5G16070	29.594	517	324	13	30	520	23	525	6.90e-53	188
MS.gene031184.t1	AT3G02530	28.794	514	333	11	30	520	23	526	3.28e-51	183

Find 119 sgRNAs with CRISPR-Local

Find 146 sgRNAs with CRISPR-GE

CRISPR-Local

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
GGGAAGATTGTGAAGATTTC+TGG	0.204894	3.3:-90221199	MS.gene031184:CDS
TGTGAAGATTTCTGGTATTA+AGG	0.209465	3.3:-90221191	MS.gene031184:CDS
TCTTGCTAAAGCTAAGATTT+TGG	0.234466	3.3:-90221359	MS.gene031184:CDS
GATTTCTGGTATTAAGGATA+TGG	0.239423	3.3:-90221185	MS.gene031184:CDS
ATCGTCTTTGCGTTTGTTAT+CGG	0.257624	3.3:+90222239	None:intergenic
AGGGATGATTAAGAAGATTA+AGG	0.275419	3.3:-90221455	MS.gene031184:CDS
GCATTCTCAGCAAGGGTATA+TGG	0.307049	3.3:+90220926	None:intergenic
CTTGTGGAAGAGCTTTCTCT+TGG	0.336541	3.3:-90221226	MS.gene031184:CDS
TCACGGAGATCCACCATTTC+CGG	0.339036	3.3:+90221715	None:intergenic
AGCAGCGGAGTCTTGAGATT+TGG	0.347607	3.3:+90222029	None:intergenic
CTCTGTTCTATATCTGTCTT+AGG	0.348731	3.3:+90221541	None:intergenic
TGTCAAGGCAATTGGGTGCT+TGG	0.354279	3.3:-90221015	MS.gene031184:CDS
ATCGGTGTAGGATTCGGTTT+TGG	0.362816	3.3:+90222257	None:intergenic
TCTCACCGCCATGGCTGTTC+CGG	0.362983	3.3:-90221872	MS.gene031184:CDS
GATAGAGCTGTCAAGGCAAT+TGG	0.370145	3.3:-90221023	MS.gene031184:CDS
TTGTGGAAGAGCTTTCTCTT+GGG	0.371995	3.3:-90221225	MS.gene031184:CDS
ATGATGCTTTGTGTGTTGTT+AGG	0.372583	3.3:-90221093	MS.gene031184:CDS
TTTGTTATCGGTGTAGGATT+CGG	0.375261	3.3:+90222251	None:intergenic
CATACCTTTGGGGCCGAGAC+TGG	0.392090	3.3:+90222164	None:intergenic
AATCTTAGCATTCTCCATTC+TGG	0.394765	3.3:+90221591	None:intergenic
GGAGGATCGGTGAGGGGCTG+CGG	0.401126	3.3:+90222278	None:intergenic
GTCAAGGCAATTGGGTGCTT+GGG	0.415529	3.3:-90221014	MS.gene031184:CDS
CGATCCCGCTAGGCCGGAAA+TGG	0.417675	3.3:-90221728	MS.gene031184:CDS
AGAACTGAATCAACAGCAAT+AGG	0.421556	3.3:+90221760	None:intergenic
AGCTCAGTAACAATTGCAAT+CGG	0.423035	3.3:+90220893	None:intergenic
TTTGTGTGTTGTTAGGTGTT+TGG	0.427682	3.3:-90221086	MS.gene031184:CDS
AAATGCTCAATATTAGCAAT+AGG	0.434996	3.3:+90221277	None:intergenic
ATTTCTGGTATTAAGGATAT+GGG	0.441434	3.3:-90221184	MS.gene031184:CDS
TTTGCGTTTGTTATCGGTGT+AGG	0.444094	3.3:+90222245	None:intergenic
TAGCACTTCGTTGAATAGTA+AGG	0.456781	3.3:-90221812	MS.gene031184:CDS
TCACGATCAGTGAGTTCAAC+CGG	0.461390	3.3:+90221853	None:intergenic
AACGCCGTTCGCACCAGTCT+CGG	0.462746	3.3:-90222177	MS.gene031184:CDS
ACCACAACTGTGCTTGTTCG+TGG	0.463002	3.3:-90221157	MS.gene031184:CDS
TACTGAGCTTGTGAAGGGCT+TGG	0.463815	3.3:-90221653	MS.gene031184:CDS
GTGATTATTCTCAGATGGAT+AGG	0.464278	3.3:-90221507	MS.gene031184:CDS
CAAGACTCCGCTGCTGGTGA+TGG	0.468281	3.3:-90222021	MS.gene031184:CDS
ATTAAGAAGATTAAGGCAAC+CGG	0.476085	3.3:-90221448	MS.gene031184:CDS
GAATGTGGTGCAGCCATTGC+TGG	0.481414	3.3:-90220792	MS.gene031184:CDS
GAAGAGCTTTCTCTTGGGGA+TGG	0.486289	3.3:-90221220	MS.gene031184:CDS
TCCACCATTTCCGGCCTAGC+GGG	0.488011	3.3:+90221724	None:intergenic
GCAATTGGGTGCTTGGGCTA+AGG	0.488468	3.3:-90221008	MS.gene031184:CDS
AGGCAAACAATTAAGAGTCT+TGG	0.489277	3.3:+90221297	None:intergenic
TGTCTCCTCCTTCTCTCTCA+TGG	0.491398	3.3:-90221955	MS.gene031184:CDS
TGTGGAAGAGCTTTCTCTTG+GGG	0.491536	3.3:-90221224	MS.gene031184:CDS
TATACCCTTGCTGAGAATGC+AGG	0.493053	3.3:-90220923	MS.gene031184:CDS
CAGTCTCGGCCCCAAAGGTA+TGG	0.493521	3.3:-90222163	MS.gene031184:CDS
AATCAACAACACATTACAAC+CGG	0.494792	3.3:+90221429	None:intergenic
CTGAGGAATCGTCATGCTAA+AGG	0.500255	3.3:-90220872	MS.gene031184:CDS
AACGGCGTTAGCGACGGAAC+GGG	0.500736	3.3:+90222191	None:intergenic
TGTCATCGATCCCGCTAGGC+CGG	0.501041	3.3:-90221734	MS.gene031184:CDS
TCAACACTGGAATCAATGTC+AGG	0.507995	3.3:-90220844	MS.gene031184:CDS
AAATCTCAAGACTCCGCTGC+TGG	0.512750	3.3:-90222027	MS.gene031184:CDS
ATAGAGCTGTCAAGGCAATT+GGG	0.513984	3.3:-90221022	MS.gene031184:CDS
GATTGCAGGTGGTGGTGCTC+CGG	0.514051	3.3:-90221047	MS.gene031184:CDS
TGCCTTGACAGCTCTATCTC+CGG	0.516484	3.3:+90221028	None:intergenic
GTTGGTGATGATAACTTCGT+TGG	0.525584	3.3:+90222119	None:intergenic
GGAACGGGCGGCGATGATGT+TGG	0.529719	3.3:+90222206	None:intergenic
TCCCGCTAGGCCGGAAATGG+TGG	0.531201	3.3:-90221725	MS.gene031184:CDS
AAGAGCTTTCTCTTGGGGAT+GGG	0.531234	3.3:-90221219	MS.gene031184:CDS
AACTTGCATCTTGTTGAGGA+TGG	0.540091	3.3:+90222086	None:intergenic
GGTTAGTGATTATTCTCAGA+TGG	0.543811	3.3:-90221512	MS.gene031184:CDS
ACATTTCTCGAGAAGTGCTC+CGG	0.552049	3.3:+90221975	None:intergenic
CGGCGATGATGTTGGATTGA+CGG	0.559941	3.3:+90222214	None:intergenic
GATGATAACTTCGTTGGAAG+AGG	0.560445	3.3:+90222125	None:intergenic
CTCCGGAGATAGAGCTGTCA+AGG	0.563162	3.3:-90221030	MS.gene031184:CDS
GAACGGCGTTAGCGACGGAA+CGG	0.564350	3.3:+90222190	None:intergenic
GGGGCCGAGACTGGTGCGAA+CGG	0.565754	3.3:+90222173	None:intergenic
AGTGAATCAGAGATAACAGT+AGG	0.569565	3.3:+90221925	None:intergenic
AAGGTTAGTCATGCTGCTGG+TGG	0.570337	3.3:-90221619	MS.gene031184:CDS
GGCGATGACAACAACGGTGG+TGG	0.571260	3.3:+90221996	None:intergenic
CGCACCAGTCTCGGCCCCAA+AGG	0.572245	3.3:-90222168	MS.gene031184:CDS
CCTCACACACTCTGTTGCCA+AGG	0.573445	3.3:+90220751	None:intergenic
TGGAACAACTTCAAGTGCCT+CGG	0.574575	3.3:+90220946	None:intergenic
GCTCAGTAACAATTGCAATC+GGG	0.575791	3.3:+90220894	None:intergenic
TCTCTGTCATCGATCCCGCT+AGG	0.576821	3.3:-90221738	MS.gene031184:CDS
ACCACCGTTGTTGTCATCGC+CGG	0.577312	3.3:-90221994	MS.gene031184:CDS
GAAGAACTTGCATCTTGTTG+AGG	0.580248	3.3:+90222082	None:intergenic
GGCGTTAGCGACGGAACGGG+CGG	0.589560	3.3:+90222194	None:intergenic
GTTGGGTTATGCTGATCTTG+TGG	0.590393	3.3:-90221242	MS.gene031184:CDS
GGTGGTTCCATCACCAGCAG+CGG	0.591723	3.3:+90222014	None:intergenic
GAATACCATGAGAGAGAAGG+AGG	0.591885	3.3:+90221950	None:intergenic
GCACTTGTGCTAACCAGCAA+TGG	0.592202	3.3:+90220779	None:intergenic
TCAAACCTGCATTCTCAGCA+AGG	0.593910	3.3:+90220918	None:intergenic
GAGTTCAACCGGAACAGCCA+TGG	0.594130	3.3:+90221864	None:intergenic
CTGTATTCGTGCATTTGCCG+AGG	0.594695	3.3:-90220963	MS.gene031184:CDS
GGTGCGAACGGCGTTAGCGA+CGG	0.594895	3.3:+90222185	None:intergenic
TGATGATACTGAGCTTGTGA+AGG	0.595971	3.3:-90221659	MS.gene031184:CDS
TTAGCATTCTCCATTCTGGT+AGG	0.596904	3.3:+90221595	None:intergenic
ACACTCTGTTGCCAAGGTGA+TGG	0.598855	3.3:+90220757	None:intergenic
TGCTGGTGGACCTACCAGAA+TGG	0.600235	3.3:-90221605	MS.gene031184:CDS
GCTAAAGGTGAGATCAACAC+TGG	0.604820	3.3:-90220857	MS.gene031184:CDS
TGTTCTATATCTGTCTTAGG+AGG	0.605667	3.3:+90221544	None:intergenic
GGTGAATACCATGAGAGAGA+AGG	0.606764	3.3:+90221947	None:intergenic
GAGGATGGTAGCGCCGTCGT+TGG	0.607730	3.3:+90222101	None:intergenic
GATGATACTGAGCTTGTGAA+GGG	0.610892	3.3:-90221658	MS.gene031184:CDS
TTGCAATTGTTACTGAGCTG+AGG	0.612866	3.3:-90220889	MS.gene031184:CDS
TCCACGAACAAGCACAGTTG+TGG	0.612984	3.3:+90221156	None:intergenic
GCTGCACCACATTCTCCTCA+AGG	0.613760	3.3:+90220801	None:intergenic
TAGCACAAGTGCCATCACCT+TGG	0.618089	3.3:-90220768	MS.gene031184:CDS
TCAAATTACAAACATCCTTG+AGG	0.621720	3.3:-90220816	MS.gene031184:CDS
AAGAAGGTTAGTCATGCTGC+TGG	0.624743	3.3:-90221622	MS.gene031184:CDS
ACTGGAATCAATGTCAGGAA+AGG	0.625427	3.3:-90220839	MS.gene031184:CDS
AAACATCCTTGAGGAGAATG+TGG	0.628033	3.3:-90220807	MS.gene031184:CDS
TCTTAACAATCTTCACATCA+CGG	0.628490	3.3:+90221698	None:intergenic
TGTTGATGTTCTCACCGCCA+TGG	0.628840	3.3:-90221881	MS.gene031184:CDS
AACATCAACAGCTTTAACAG+AGG	0.629483	3.3:+90221894	None:intergenic
GTGAAGATTGTTAAGAAGCT+CGG	0.630785	3.3:-90221691	MS.gene031184:CDS
TTAGGTGTTTGGTTGCCAAG+AGG	0.631658	3.3:-90221075	MS.gene031184:CDS
ATCCACCATTTCCGGCCTAG+CGG	0.644279	3.3:+90221723	None:intergenic
GTGAATCAGAGATAACAGTA+GGG	0.649997	3.3:+90221926	None:intergenic
CCTTGGCAACAGAGTGTGTG+AGG	0.652881	3.3:-90220751	MS.gene031184:CDS
CAAACCTGCATTCTCAGCAA+GGG	0.653006	3.3:+90220919	None:intergenic
AGATATAGAACAGAGTATTG+TGG	0.666081	3.3:-90221533	MS.gene031184:CDS
GAAGTTATCATCACCAACGA+CGG	0.680075	3.3:-90222114	MS.gene031184:CDS
TTCAACCGGAACAGCCATGG+CGG	0.690129	3.3:+90221867	None:intergenic
AAGATTGTTAAGAAGCTCGG+TGG	0.695277	3.3:-90221688	MS.gene031184:CDS
TGCTCCGGCGATGACAACAA+CGG	0.714797	3.3:+90221990	None:intergenic
TCCGGCGATGACAACAACGG+TGG	0.732056	3.3:+90221993	None:intergenic
TTGATGATATTGTAACTGTG+AGG	0.759737	3.3:-90220715	MS.gene031184:CDS

CRISPR-GE

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
!	AAATGCTCAATATTAGCAAT+AGG	+	chr3.3:90221726-90221745	None:intergenic	25.0%
!!!	ATTTCTGGTATTAAGGATAT+GGG	-	chr3.3:90221816-90221835	MS.gene031184:CDS	25.0%
	AATCAACAACACATTACAAC+CGG	+	chr3.3:90221574-90221593	None:intergenic	30.0%
	AGGGATGATTAAGAAGATTA+AGG	-	chr3.3:90221545-90221564	MS.gene031184:CDS	30.0%
	ATTAAGAAGATTAAGGCAAC+CGG	-	chr3.3:90221552-90221571	MS.gene031184:CDS	30.0%
	TCAAATTACAAACATCCTTG+AGG	-	chr3.3:90222184-90222203	MS.gene031184:CDS	30.0%
	TCTTAACAATCTTCACATCA+CGG	+	chr3.3:90221305-90221324	None:intergenic	30.0%
!	AAGAGAGGAGTTACATTTTA+GGG	-	chr3.3:90221526-90221545	MS.gene031184:CDS	30.0%
!	ATCATTTTGTCCATACCTTT+GGG	+	chr3.3:90220850-90220869	None:intergenic	30.0%
!	TCTTGCTAAAGCTAAGATTT+TGG	-	chr3.3:90221641-90221660	MS.gene031184:CDS	30.0%
!	TTGATGATATTGTAACTGTG+AGG	-	chr3.3:90222285-90222304	MS.gene031184:CDS	30.0%
!!	AGATATAGAACAGAGTATTG+TGG	-	chr3.3:90221467-90221486	MS.gene031184:CDS	30.0%
!!	GATTTCTGGTATTAAGGATA+TGG	-	chr3.3:90221815-90221834	MS.gene031184:CDS	30.0%
!!	TGTGAAGATTTCTGGTATTA+AGG	-	chr3.3:90221809-90221828	MS.gene031184:CDS	30.0%
	AATCTTAGCATTCTCCATTC+TGG	+	chr3.3:90221412-90221431	None:intergenic	35.0%
	AGAACTGAATCAACAGCAAT+AGG	+	chr3.3:90221243-90221262	None:intergenic	35.0%
	AGCTCAGTAACAATTGCAAT+CGG	+	chr3.3:90222110-90222129	None:intergenic	35.0%
	AGGCAAACAATTAAGAGTCT+TGG	+	chr3.3:90221706-90221725	None:intergenic	35.0%
	AGTGAATCAGAGATAACAGT+AGG	+	chr3.3:90221078-90221097	None:intergenic	35.0%
	CTCTGTTCTATATCTGTCTT+AGG	+	chr3.3:90221462-90221481	None:intergenic	35.0%
	GGTTAGTGATTATTCTCAGA+TGG	-	chr3.3:90221488-90221507	MS.gene031184:CDS	35.0%
	GTGAAGATTGTTAAGAAGCT+CGG	-	chr3.3:90221309-90221328	MS.gene031184:CDS	35.0%
	GTGAATCAGAGATAACAGTA+GGG	+	chr3.3:90221077-90221096	None:intergenic	35.0%
	GTGATTATTCTCAGATGGAT+AGG	-	chr3.3:90221493-90221512	MS.gene031184:CDS	35.0%
	TAGCACTTCGTTGAATAGTA+AGG	-	chr3.3:90221188-90221207	MS.gene031184:CDS	35.0%
	TGTTCTATATCTGTCTTAGG+AGG	+	chr3.3:90221459-90221478	None:intergenic	35.0%
!	AACATCAACAGCTTTAACAG+AGG	+	chr3.3:90221109-90221128	None:intergenic	35.0%
!	ATGATGCTTTGTGTGTTGTT+AGG	-	chr3.3:90221907-90221926	MS.gene031184:CDS	35.0%
!	GAAGAGAGGAGTTACATTTT+AGG	-	chr3.3:90221525-90221544	MS.gene031184:CDS	35.0%
!	GATCATTTTGTCCATACCTT+TGG	+	chr3.3:90220851-90220870	None:intergenic	35.0%
!	TCAGATGGATAGGATTTTGA+AGG	-	chr3.3:90221503-90221522	MS.gene031184:CDS	35.0%
!	TCATTTTGTCCATACCTTTG+GGG	+	chr3.3:90220849-90220868	None:intergenic	35.0%
!	TTTGTGTGTTGTTAGGTGTT+TGG	-	chr3.3:90221914-90221933	MS.gene031184:CDS	35.0%
!	TTTGTTATCGGTGTAGGATT+CGG	+	chr3.3:90220752-90220771	None:intergenic	35.0%
!!	ATAGGATTTTGAAGGAAGAG+AGG	-	chr3.3:90221511-90221530	MS.gene031184:CDS	35.0%
!!	ATCGTCTTTGCGTTTGTTAT+CGG	+	chr3.3:90220764-90220783	None:intergenic	35.0%
	AAACATCCTTGAGGAGAATG+TGG	-	chr3.3:90222193-90222212	MS.gene031184:CDS	40.0%
	AACTTGCATCTTGTTGAGGA+TGG	+	chr3.3:90220917-90220936	None:intergenic	40.0%
	AAGATTGTTAAGAAGCTCGG+TGG	-	chr3.3:90221312-90221331	MS.gene031184:CDS	40.0%
	ACCTGCAATCAAAAACCTCT+TGG	+	chr3.3:90221943-90221962	None:intergenic	40.0%
	ACTGGAATCAATGTCAGGAA+AGG	-	chr3.3:90222161-90222180	MS.gene031184:CDS	40.0%
	ATAGAGCTGTCAAGGCAATT+GGG	-	chr3.3:90221978-90221997	MS.gene031184:CDS	40.0%
	GAAGAACTTGCATCTTGTTG+AGG	+	chr3.3:90220921-90220940	None:intergenic	40.0%
	GAAGTTATCATCACCAACGA+CGG	-	chr3.3:90220886-90220905	MS.gene031184:CDS	40.0%
	GATGATAACTTCGTTGGAAG+AGG	+	chr3.3:90220878-90220897	None:intergenic	40.0%
	GATGATACTGAGCTTGTGAA+GGG	-	chr3.3:90221342-90221361	MS.gene031184:CDS	40.0%
	GCTCAGTAACAATTGCAATC+GGG	+	chr3.3:90222109-90222128	None:intergenic	40.0%
	GGGAAGATTGTGAAGATTTC+TGG	-	chr3.3:90221801-90221820	MS.gene031184:CDS	40.0%
	TCAACACTGGAATCAATGTC+AGG	-	chr3.3:90222156-90222175	MS.gene031184:CDS	40.0%
	TGATGATACTGAGCTTGTGA+AGG	-	chr3.3:90221341-90221360	MS.gene031184:CDS	40.0%
	TTAGCATTCTCCATTCTGGT+AGG	+	chr3.3:90221408-90221427	None:intergenic	40.0%
	TTGCAATTGTTACTGAGCTG+AGG	-	chr3.3:90222111-90222130	MS.gene031184:CDS	40.0%
	TTGTGGAAGAGCTTTCTCTT+GGG	-	chr3.3:90221775-90221794	MS.gene031184:CDS	40.0%
!	CATTTTCGTGCTGAGAAGTT+GGG	-	chr3.3:90221741-90221760	MS.gene031184:CDS	40.0%
!	GAGTTCAACGAGCATTTTAG+CGG	+	chr3.3:90220950-90220969	None:intergenic	40.0%
!!	AAGAGGTTTTTGATTGCAGG+TGG	-	chr3.3:90221942-90221961	MS.gene031184:CDS	40.0%
!!	GGGCTTGGTTTTTGATAAGA+AGG	-	chr3.3:90221362-90221381	MS.gene031184:CDS	40.0%
!!	GTTGGTGATGATAACTTCGT+TGG	+	chr3.3:90220884-90220903	None:intergenic	40.0%
!!	TTTGCGTTTGTTATCGGTGT+AGG	+	chr3.3:90220758-90220777	None:intergenic	40.0%
	AAGAGCTTTCTCTTGGGGAT+GGG	-	chr3.3:90221781-90221800	MS.gene031184:CDS	45.0%
	CAAACCTGCATTCTCAGCAA+GGG	+	chr3.3:90222084-90222103	None:intergenic	45.0%
	CTGAGGAATCGTCATGCTAA+AGG	-	chr3.3:90222128-90222147	MS.gene031184:CDS	45.0%
	CTTGTGGAAGAGCTTTCTCT+TGG	-	chr3.3:90221774-90221793	MS.gene031184:CDS	45.0%
	GAATACCATGAGAGAGAAGG+AGG	+	chr3.3:90221053-90221072	None:intergenic	45.0%
	GATAGAGCTGTCAAGGCAAT+TGG	-	chr3.3:90221977-90221996	MS.gene031184:CDS	45.0%
	GCTAAAGGTGAGATCAACAC+TGG	-	chr3.3:90222143-90222162	MS.gene031184:CDS	45.0%
	GGTGAATACCATGAGAGAGA+AGG	+	chr3.3:90221056-90221075	None:intergenic	45.0%
	GTTGGGTTATGCTGATCTTG+TGG	-	chr3.3:90221758-90221777	MS.gene031184:CDS	45.0%
	TATACCCTTGCTGAGAATGC+AGG	-	chr3.3:90222077-90222096	MS.gene031184:CDS	45.0%
	TCAAACCTGCATTCTCAGCA+AGG	+	chr3.3:90222085-90222104	None:intergenic	45.0%
	TCACGATCAGTGAGTTCAAC+CGG	+	chr3.3:90221150-90221169	None:intergenic	45.0%
	TGGAACAACTTCAAGTGCCT+CGG	+	chr3.3:90222057-90222076	None:intergenic	45.0%
	TGTGGAAGAGCTTTCTCTTG+GGG	-	chr3.3:90221776-90221795	MS.gene031184:CDS	45.0%
	TTAGGTGTTTGGTTGCCAAG+AGG	-	chr3.3:90221925-90221944	MS.gene031184:CDS	45.0%
!	AAGAAGGTTAGTCATGCTGC+TGG	-	chr3.3:90221378-90221397	MS.gene031184:CDS	45.0%
!	AAGGTTTTGCATGGGATGGA+GGG	-	chr3.3:90222011-90222030	MS.gene031184:CDS	45.0%
!	CTTGGGCTAAGGTTTTGCAT+GGG	-	chr3.3:90222003-90222022	MS.gene031184:CDS	45.0%
!	GCATTCTCAGCAAGGGTATA+TGG	+	chr3.3:90222077-90222096	None:intergenic	45.0%
!	GCATTTTCGTGCTGAGAAGT+TGG	-	chr3.3:90221740-90221759	MS.gene031184:CDS	45.0%
!	TAAGGTTTTGCATGGGATGG+AGG	-	chr3.3:90222010-90222029	MS.gene031184:CDS	45.0%
!!	ACATTTCTCGAGAAGTGCTC+CGG	+	chr3.3:90221028-90221047	None:intergenic	45.0%
!!	AGGTTTTTGATTGCAGGTGG+TGG	-	chr3.3:90221945-90221964	MS.gene031184:CDS	45.0%
!!	ATCGGTGTAGGATTCGGTTT+TGG	+	chr3.3:90220746-90220765	None:intergenic	45.0%
!!	GCCAAGAGGTTTTTGATTGC+AGG	-	chr3.3:90221939-90221958	MS.gene031184:CDS	45.0%
!!	TTCAACGAGCATTTTAGCGG+CGG	+	chr3.3:90220947-90220966	None:intergenic	45.0%
!!!	AGGATTCGGTTTTGGAGGAT+CGG	+	chr3.3:90220738-90220757	None:intergenic	45.0%
	AAATCTCAAGACTCCGCTGC+TGG	-	chr3.3:90220973-90220992	MS.gene031184:CDS	50.0%
	ACACTCTGTTGCCAAGGTGA+TGG	+	chr3.3:90222246-90222265	None:intergenic	50.0%
	ACCACAACTGTGCTTGTTCG+TGG	-	chr3.3:90221843-90221862	MS.gene031184:CDS	50.0%
	AGCAGCGGAGTCTTGAGATT+TGG	+	chr3.3:90220974-90220993	None:intergenic	50.0%
	CGGCGATGATGTTGGATTGA+CGG	+	chr3.3:90220789-90220808	None:intergenic	50.0%
	CTGTATTCGTGCATTTGCCG+AGG	-	chr3.3:90222037-90222056	MS.gene031184:CDS	50.0%
	GAAGAGCTTTCTCTTGGGGA+TGG	-	chr3.3:90221780-90221799	MS.gene031184:CDS	50.0%
	GCACTTGTGCTAACCAGCAA+TGG	+	chr3.3:90222224-90222243	None:intergenic	50.0%
	GTCAAGGCAATTGGGTGCTT+GGG	-	chr3.3:90221986-90222005	MS.gene031184:CDS	50.0%
	TACTGAGCTTGTGAAGGGCT+TGG	-	chr3.3:90221347-90221366	MS.gene031184:CDS	50.0%
	TAGCACAAGTGCCATCACCT+TGG	-	chr3.3:90222232-90222251	MS.gene031184:CDS	50.0%
	TCACGGAGATCCACCATTTC+CGG	+	chr3.3:90221288-90221307	None:intergenic	50.0%
	TCCACGAACAAGCACAGTTG+TGG	+	chr3.3:90221847-90221866	None:intergenic	50.0%
	TGCCTTGACAGCTCTATCTC+CGG	+	chr3.3:90221975-90221994	None:intergenic	50.0%
	TGTCAAGGCAATTGGGTGCT+TGG	-	chr3.3:90221985-90222004	MS.gene031184:CDS	50.0%
	TGTCTCCTCCTTCTCTCTCA+TGG	-	chr3.3:90221045-90221064	MS.gene031184:CDS	50.0%
	TGTTGATGTTCTCACCGCCA+TGG	-	chr3.3:90221119-90221138	MS.gene031184:CDS	50.0%
!	AAGGTTAGTCATGCTGCTGG+TGG	-	chr3.3:90221381-90221400	MS.gene031184:CDS	50.0%
!	GCTTGGGCTAAGGTTTTGCA+TGG	-	chr3.3:90222002-90222021	MS.gene031184:CDS	50.0%
!	GGCTAAGGTTTTGCATGGGA+TGG	-	chr3.3:90222007-90222026	MS.gene031184:CDS	50.0%
!!	GGTGTAGGATTCGGTTTTGG+AGG	+	chr3.3:90220743-90220762	None:intergenic	50.0%
!!	TCAACGAGCATTTTAGCGGC+GGG	+	chr3.3:90220946-90220965	None:intergenic	50.0%
	ACCACCGTTGTTGTCATCGC+CGG	-	chr3.3:90221006-90221025	MS.gene031184:CDS	55.0%
	ATCCACCATTTCCGGCCTAG+CGG	+	chr3.3:90221280-90221299	None:intergenic	55.0%
	CCTCACACACTCTGTTGCCA+AGG	+	chr3.3:90222252-90222271	None:intergenic	55.0%
	CCTTGGCAACAGAGTGTGTG+AGG	-	chr3.3:90222249-90222268	MS.gene031184:CDS	55.0%
	CTCCGGAGATAGAGCTGTCA+AGG	-	chr3.3:90221970-90221989	MS.gene031184:CDS	55.0%
	GAATGTGGTGCAGCCATTGC+TGG	-	chr3.3:90222208-90222227	MS.gene031184:CDS	55.0%
	GAGTTCAACCGGAACAGCCA+TGG	+	chr3.3:90221139-90221158	None:intergenic	55.0%
	GCAATTGGGTGCTTGGGCTA+AGG	-	chr3.3:90221992-90222011	MS.gene031184:CDS	55.0%
	GCTGCACCACATTCTCCTCA+AGG	+	chr3.3:90222202-90222221	None:intergenic	55.0%
	TCTCTGTCATCGATCCCGCT+AGG	-	chr3.3:90221262-90221281	MS.gene031184:CDS	55.0%
	TGCTCCGGCGATGACAACAA+CGG	+	chr3.3:90221013-90221032	None:intergenic	55.0%
	TTCAACCGGAACAGCCATGG+CGG	+	chr3.3:90221136-90221155	None:intergenic	55.0%
!	TGCTGGTGGACCTACCAGAA+TGG	-	chr3.3:90221395-90221414	MS.gene031184:CDS	55.0%
!!!	CGGTTTTGGAGGATCGGTGA+GGG	+	chr3.3:90220732-90220751	None:intergenic	55.0%
!!!	GGTTTTGGAGGATCGGTGAG+GGG	+	chr3.3:90220731-90220750	None:intergenic	55.0%
!!!	TCGGTTTTGGAGGATCGGTG+AGG	+	chr3.3:90220733-90220752	None:intergenic	55.0%
	AACGCCGTTCGCACCAGTCT+CGG	-	chr3.3:90220823-90220842	MS.gene031184:CDS	60.0%
	AACGGCGTTAGCGACGGAAC+GGG	+	chr3.3:90220812-90220831	None:intergenic	60.0%
	CAAGACTCCGCTGCTGGTGA+TGG	-	chr3.3:90220979-90220998	MS.gene031184:CDS	60.0%
	CAGTCTCGGCCCCAAAGGTA+TGG	-	chr3.3:90220837-90220856	MS.gene031184:CDS	60.0%
	GAACGGCGTTAGCGACGGAA+CGG	+	chr3.3:90220813-90220832	None:intergenic	60.0%
	GGCGATGACAACAACGGTGG+TGG	+	chr3.3:90221007-90221026	None:intergenic	60.0%
	GGTGGTTCCATCACCAGCAG+CGG	+	chr3.3:90220989-90221008	None:intergenic	60.0%
	TCCACCATTTCCGGCCTAGC+GGG	+	chr3.3:90221279-90221298	None:intergenic	60.0%
	TCCGGCGATGACAACAACGG+TGG	+	chr3.3:90221010-90221029	None:intergenic	60.0%
	TCTCACCGCCATGGCTGTTC+CGG	-	chr3.3:90221128-90221147	MS.gene031184:CDS	60.0%
	TGTCATCGATCCCGCTAGGC+CGG	-	chr3.3:90221266-90221285	MS.gene031184:CDS	60.0%
!	GATTGCAGGTGGTGGTGCTC+CGG	-	chr3.3:90221953-90221972	MS.gene031184:CDS	60.0%
!!	CATACCTTTGGGGCCGAGAC+TGG	+	chr3.3:90220839-90220858	None:intergenic	60.0%
	CGATCCCGCTAGGCCGGAAA+TGG	-	chr3.3:90221272-90221291	MS.gene031184:CDS	65.0%
	GGAACGGGCGGCGATGATGT+TGG	+	chr3.3:90220797-90220816	None:intergenic	65.0%
	GGTGCGAACGGCGTTAGCGA+CGG	+	chr3.3:90220818-90220837	None:intergenic	65.0%
	TCCCGCTAGGCCGGAAATGG+TGG	-	chr3.3:90221275-90221294	MS.gene031184:CDS	65.0%
!	GAGGATGGTAGCGCCGTCGT+TGG	+	chr3.3:90220902-90220921	None:intergenic	65.0%
	CGCACCAGTCTCGGCCCCAA+AGG	-	chr3.3:90220832-90220851	MS.gene031184:CDS	70.0%
	GGAGGATCGGTGAGGGGCTG+CGG	+	chr3.3:90220725-90220744	None:intergenic	70.0%
	GGCGTTAGCGACGGAACGGG+CGG	+	chr3.3:90220809-90220828	None:intergenic	70.0%
	GGGGCCGAGACTGGTGCGAA+CGG	+	chr3.3:90220830-90220849	None:intergenic	70.0%

Chromosome	Type	Strat	End	Strand	Name
chr3.3	gene	90220712	90222310	90220712	ID=MS.gene031184
chr3.3	mRNA	90220712	90222310	90220712	ID=MS.gene031184.t1;Parent=MS.gene031184
chr3.3	exon	90220712	90222310	90220712	ID=MS.gene031184.t1.exon1;Parent=MS.gene031184.t1
chr3.3	CDS	90220712	90222310	90220712	ID=cds.MS.gene031184.t1;Parent=MS.gene031184.t1

Gene Sequence

>MS.gene031184

ATGGCAACAACCGCAGCCCCTCACCGATCCTCCAAAACCGAATCCTACACCGATAACAAACGCAAAGACGATGTCCGTCAATCCAACATCATCGCCGCCCGTTCCGTCGCTAACGCCGTTCGCACCAGTCTCGGCCCCAAAGGTATGGACAAAATGATCTCAACCTCTTCCAACGAAGTTATCATCACCAACGACGGCGCTACCATCCTCAACAAGATGCAAGTTCTTCAACCCGCCGCTAAAATGCTCGTTGAACTCTCCAAATCTCAAGACTCCGCTGCTGGTGATGGAACCACCACCGTTGTTGTCATCGCCGGAGCACTTCTCGAGAAATGTCTCCTCCTTCTCTCTCATGGTATTCACCCTACTGTTATCTCTGATTCACTTCACAAAGCCTCTGTTAAAGCTGTTGATGTTCTCACCGCCATGGCTGTTCCGGTTGAACTCACTGATCGTGATTCACTCGTGAAATCTGCTAGCACTTCGTTGAATAGTAAGGTTGTTAGTCAATACTCTTCGCTTCTCGCTCCTATTGCTGTTGATTCAGTTCTCTCTGTCATCGATCCCGCTAGGCCGGAAATGGTGGATCTCCGTGATGTGAAGATTGTTAAGAAGCTCGGTGGAACAGTTGATGATACTGAGCTTGTGAAGGGCTTGGTTTTTGATAAGAAGGTTAGTCATGCTGCTGGTGGACCTACCAGAATGGAGAATGCTAAGATTGCTGTGATTCAGTTTCAAATTTCGCCTCCTAAGACAGATATAGAACAGAGTATTGTGGTTAGTGATTATTCTCAGATGGATAGGATTTTGAAGGAAGAGAGGAGTTACATTTTAGGGATGATTAAGAAGATTAAGGCAACCGGTTGTAATGTGTTGTTGATTCAGAAGAGTATTTTGAGAGATGCTGTTACTGATTTGTCTTTGCATTATCTTGCTAAAGCTAAGATTTTGGTGATTAAAGATGTTGAGCGTGACGAGATTGAGTTCATTACCAAGACTCTTAATTGTTTGCCTATTGCTAATATTGAGCATTTTCGTGCTGAGAAGTTGGGTTATGCTGATCTTGTGGAAGAGCTTTCTCTTGGGGATGGGAAGATTGTGAAGATTTCTGGTATTAAGGATATGGGAAAGACCACAACTGTGCTTGTTCGTGGATCTAATTTGCTTGTGCTCGATGAAGCTGAGCGAAGTCTGCATGATGCTTTGTGTGTTGTTAGGTGTTTGGTTGCCAAGAGGTTTTTGATTGCAGGTGGTGGTGCTCCGGAGATAGAGCTGTCAAGGCAATTGGGTGCTTGGGCTAAGGTTTTGCATGGGATGGAGGGTTACTGTATTCGTGCATTTGCCGAGGCACTTGAAGTTGTTCCATATACCCTTGCTGAGAATGCAGGTTTGAACCCGATTGCAATTGTTACTGAGCTGAGGAATCGTCATGCTAAAGGTGAGATCAACACTGGAATCAATGTCAGGAAAGGTCAAATTACAAACATCCTTGAGGAGAATGTGGTGCAGCCATTGCTGGTTAGCACAAGTGCCATCACCTTGGCAACAGAGTGTGTGAGGATGATTTTGAAGATTGATGATATTGTAACTGTGAGGTAG

Protein sequence

>MS.gene031184.t1

MATTAAPHRSSKTESYTDNKRKDDVRQSNIIAARSVANAVRTSLGPKGMDKMISTSSNEVIITNDGATILNKMQVLQPAAKMLVELSKSQDSAAGDGTTTVVVIAGALLEKCLLLLSHGIHPTVISDSLHKASVKAVDVLTAMAVPVELTDRDSLVKSASTSLNSKVVSQYSSLLAPIAVDSVLSVIDPARPEMVDLRDVKIVKKLGGTVDDTELVKGLVFDKKVSHAAGGPTRMENAKIAVIQFQISPPKTDIEQSIVVSDYSQMDRILKEERSYILGMIKKIKATGCNVLLIQKSILRDAVTDLSLHYLAKAKILVIKDVERDEIEFITKTLNCLPIANIEHFRAEKLGYADLVEELSLGDGKIVKISGIKDMGKTTTVLVRGSNLLVLDEAERSLHDALCVVRCLVAKRFLIAGGGAPEIELSRQLGAWAKVLHGMEGYCIRAFAEALEVVPYTLAENAGLNPIAIVTELRNRHAKGEINTGINVRKGQITNILEENVVQPLLVSTSAITLATECVRMILKIDDIVTVR