AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene032830

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene032830.t1 MTR_5g039390 98.319 476 8 0 1 476 1 476 0.0 972
MS.gene032830.t1 MTR_8g468030 73.870 509 88 7 1 476 1 497 0.0 734
MS.gene032830.t1 MTR_4g108280 63.760 367 128 2 112 476 17 380 5.42e-173 491
MS.gene032830.t1 MTR_4g022260 60.656 366 143 1 111 476 53 417 6.10e-161 462
MS.gene032830.t1 MTR_0345s0010 61.190 353 136 1 124 476 84 435 7.17e-161 462
MS.gene032830.t1 MTR_0105s0130 61.190 353 136 1 124 476 84 435 2.02e-160 461
MS.gene032830.t1 MTR_0105s0170 60.907 353 137 1 124 476 97 448 9.58e-160 460
MS.gene032830.t1 MTR_0105s0020 60.340 353 139 1 124 476 84 435 3.15e-159 458
MS.gene032830.t1 MTR_0105s0040 60.907 353 137 1 124 476 182 533 4.02e-159 461
MS.gene032830.t1 MTR_0496s0010 59.563 366 141 3 111 476 53 411 6.89e-158 454
MS.gene032830.t1 MTR_1330s0010 60.807 347 135 1 124 470 97 442 6.18e-156 450
MS.gene032830.t1 MTR_4g022400 59.322 354 143 1 123 476 62 414 1.04e-151 438
MS.gene032830.t1 MTR_2g094093 50.282 354 163 4 128 476 19 364 2.87e-115 343
MS.gene032830.t1 MTR_7g029290 38.596 342 193 9 142 474 68 401 2.06e-66 219
MS.gene032830.t1 MTR_6g023805 37.534 365 190 9 130 474 57 403 2.40e-63 211
MS.gene032830.t1 MTR_0105s0060 56.044 91 40 0 386 476 15 105 6.31e-35 126
MS.gene032830.t1 MTR_3g085570 28.980 245 149 7 125 352 31 267 9.75e-22 97.1
MS.gene032830.t1 MTR_8g080370 26.446 242 159 5 125 352 47 283 2.16e-16 81.3
MS.gene032830.t1 MTR_3g073640 23.851 348 191 11 129 408 43 384 1.34e-15 79.3
MS.gene032830.t1 MTR_8g085600 26.408 284 181 9 129 401 77 343 2.76e-15 78.2
MS.gene032830.t1 MTR_4g114110 25.243 309 201 11 105 401 57 347 5.28e-15 77.4
MS.gene032830.t1 MTR_2g008440 23.810 357 191 12 125 408 39 387 1.47e-13 73.2
MS.gene032830.t1 MTR_4g011900 24.800 250 162 5 129 352 5 254 2.00e-13 72.0
MS.gene032830.t1 MTR_7g095220 22.511 231 161 4 138 351 13 242 5.72e-12 67.4
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene032830.t1 AT2G02870 60.700 486 162 9 1 476 1 467 0.0 568
MS.gene032830.t1 AT2G02870 60.700 486 162 9 1 476 1 467 0.0 568
MS.gene032830.t1 AT2G02870 60.700 486 162 9 1 476 1 467 0.0 568
MS.gene032830.t1 AT1G14330 59.290 479 154 8 1 476 1 441 0.0 550
MS.gene032830.t1 AT1G26930 68.378 370 114 1 110 476 52 421 0.0 531
MS.gene032830.t1 AT1G74510 65.169 356 115 2 130 476 96 451 3.05e-169 484
MS.gene032830.t1 AT1G74510 65.169 356 115 2 130 476 96 451 3.05e-169 484
MS.gene032830.t1 AT1G74510 65.169 356 115 2 130 476 96 451 3.05e-169 484
MS.gene032830.t1 AT1G26930 57.838 370 101 2 110 476 52 369 4.88e-149 430
MS.gene032830.t1 AT5G60570 45.430 372 188 6 111 476 31 393 4.14e-107 324
MS.gene032830.t1 AT5G60570 45.430 372 188 6 111 476 31 393 4.14e-107 324
MS.gene032830.t1 AT5G60570 45.430 372 188 6 111 476 31 393 4.14e-107 324
MS.gene032830.t1 AT3G27150 37.673 361 198 10 130 474 71 420 9.55e-67 220
MS.gene032830.t1 AT3G27150 37.673 361 198 10 130 474 71 420 9.55e-67 220
MS.gene032830.t1 AT5G40680 35.119 336 206 4 107 437 43 371 4.92e-61 205
MS.gene032830.t1 AT1G16250 26.061 330 208 10 128 433 7 324 2.97e-24 104
MS.gene032830.t1 AT1G16250 26.061 330 208 10 128 433 7 324 2.97e-24 104
MS.gene032830.t1 AT1G67480 29.614 233 145 5 129 347 39 266 2.45e-21 95.9
MS.gene032830.t1 AT1G67480 29.614 233 145 5 129 347 39 266 2.45e-21 95.9
MS.gene032830.t1 AT1G67480 29.614 233 145 5 129 347 39 266 2.45e-21 95.9
MS.gene032830.t1 AT1G15670 25.648 347 209 14 129 445 3 330 7.49e-17 82.4
MS.gene032830.t1 AT1G55270 26.496 234 157 5 129 352 78 306 1.71e-16 82.0
MS.gene032830.t1 AT3G61350 23.054 334 215 12 115 432 6 313 2.20e-14 74.7
MS.gene032830.t1 AT3G61350 23.054 334 215 12 115 432 6 313 2.20e-14 74.7
MS.gene032830.t1 AT1G80440 24.540 326 208 11 129 432 3 312 7.52e-14 73.2
MS.gene032830.t1 AT1G22040 25.862 348 183 11 129 408 43 383 7.56e-14 73.9
MS.gene032830.t1 AT1G27420 24.206 252 150 7 124 350 5 240 4.60e-12 67.8
MS.gene032830.t1 AT3G63220 23.113 212 145 4 129 323 4 214 2.97e-11 65.1
MS.gene032830.t1 AT3G63220 23.113 212 145 4 129 323 11 221 3.01e-11 65.1
MS.gene032830.t1 AT3G63220 23.113 212 145 4 129 323 11 221 3.01e-11 65.1

Find 120 sgRNAs with CRISPR-Local

Find 130 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GCTGGAGATTCGTCGGATTC+TGG 0.248232 5.2:+29427352 MS.gene032830:CDS
TGCATCCACCTTTGGCGAAT+TGG 0.251940 5.2:-29427583 None:intergenic
ATGGTTGGGGTCTTGCATTT+AGG 0.276947 5.2:+29428238 MS.gene032830:CDS
TGGTTGGGGTCTTGCATTTA+GGG 0.285142 5.2:+29428239 MS.gene032830:CDS
GGAAATATGCTCATTGTTAT+TGG 0.306561 5.2:+29428267 MS.gene032830:CDS
CATGAAGTACATGCTGGATT+TGG 0.313702 5.2:+29427069 MS.gene032830:CDS
TTCATCGACATCGCTCGTTC+TGG 0.316008 5.2:-29428216 None:intergenic
GGAACCGAACTTCTTGTGTT+TGG 0.324378 5.2:+29427667 MS.gene032830:CDS
GTTTCATTGAACTCAATTCT+TGG 0.330175 5.2:+29428313 MS.gene032830:CDS
AGGAATTTCTGTCCATGTTC+TGG 0.338733 5.2:-29428025 None:intergenic
ATCTATAAACCTCGCCGCTT+CGG 0.350189 5.2:-29427486 None:intergenic
ATGCTGACATGGAAGTTAAA+AGG 0.357590 5.2:+29428151 MS.gene032830:CDS
GAACCGAACTTCTTGTGTTT+GGG 0.358419 5.2:+29427668 MS.gene032830:CDS
GCATCCACCTTTGGCGAATT+GGG 0.360483 5.2:-29427582 None:intergenic
CGCTGTTCAAGGTCTGATTA+TGG 0.366547 5.2:+29427424 MS.gene032830:CDS
TGTGTCTCAGTCGCTGTTCA+AGG 0.376165 5.2:+29427413 MS.gene032830:CDS
TCTCGTGTGCCCTCCTTGAA+TGG 0.387707 5.2:+29427548 MS.gene032830:CDS
TTTCATTGAACTCAATTCTT+GGG 0.403492 5.2:+29428314 MS.gene032830:CDS
TTGACAAATTCATGGTCCTC+TGG 0.419803 5.2:+29427730 MS.gene032830:CDS
TCGGCAAATGCATCCACCTT+TGG 0.425014 5.2:-29427591 None:intergenic
CGTTTATAATTGTGCTGTGA+TGG 0.426012 5.2:+29428395 MS.gene032830:CDS
ACAAACATTCAAGGGCTCAT+TGG 0.427663 5.2:-29427254 None:intergenic
CTCGTGTGCCCTCCTTGAAT+GGG 0.432187 5.2:+29427549 MS.gene032830:CDS
TTCCTCGGTTTATTCATGCT+CGG 0.436739 5.2:-29427898 None:intergenic
GGCGGTGCCTCGGTTGCAGC+AGG 0.445232 5.2:-29428087 None:intergenic
AAACCGAGGAAGATGTGTTC+TGG 0.445291 5.2:+29427910 MS.gene032830:CDS
ATTAGCAGGTGGTTGTGATT+CGG 0.446104 5.2:+29427813 MS.gene032830:CDS
TCCTCGGTTTATTCATGCTC+GGG 0.446460 5.2:-29427897 None:intergenic
GGATTCTGTTCTTTCTCAAA+CGG 0.450478 5.2:+29427222 MS.gene032830:CDS
AGCGATGTCGATGAATGGTT+GGG 0.451823 5.2:+29428224 MS.gene032830:CDS
AAACGGTATCATGGAACATT+GGG 0.454394 5.2:+29427519 MS.gene032830:CDS
ACAATTATAAACGAAGTTAC+CGG 0.457419 5.2:-29428385 None:intergenic
GGTCGTACGCTTCCCATTCA+AGG 0.463650 5.2:-29427561 None:intergenic
GATGTGTTCTGGTGTATTCA+TGG 0.466838 5.2:+29427921 MS.gene032830:CDS
AGAACCCCTACTACTTCGTC+CGG 0.468311 5.2:-29428058 None:intergenic
TGAGAAAGAACAGAATCCTT+AGG 0.471913 5.2:-29427217 None:intergenic
AACTCCTTGACAAACATTCA+AGG 0.473412 5.2:-29427263 None:intergenic
AATGCTCCAAGATGTTTGTT+CGG 0.474359 5.2:+29427763 MS.gene032830:CDS
CGCCGCTTCGGATTATTTCA+CGG 0.477509 5.2:-29427474 None:intergenic
GAGCGATGTCGATGAATGGT+TGG 0.478296 5.2:+29428223 MS.gene032830:CDS
ATCTTGTCACATAGTTGAAA+CGG 0.478670 5.2:+29427174 MS.gene032830:CDS
TATTTCGTTGCAACATCCTA+AGG 0.480105 5.2:+29427201 MS.gene032830:CDS
GTCGTTGCTGTGTTGTTTCG+AGG 0.487767 5.2:+29427005 MS.gene032830:CDS
TGAGATGCCTGCTGCAACCG+AGG 0.492241 5.2:+29428080 MS.gene032830:CDS
GAAGCGGCGAGGTTTATAGA+TGG 0.493954 5.2:+29427488 MS.gene032830:CDS
GGTGAGATTGCGATATTAGC+AGG 0.494746 5.2:+29427799 MS.gene032830:CDS
AAACCTTCACCATGAGTCCT+AGG 0.500082 5.2:-29428294 None:intergenic
GATAAAGAATCTTTAGCTGT+AGG 0.501866 5.2:+29427646 MS.gene032830:CDS
GTCTTACATGAAGTACATGC+TGG 0.509303 5.2:+29427063 MS.gene032830:CDS
GGCAATGAGAGGCGGTGCCT+CGG 0.509621 5.2:-29428097 None:intergenic
AACATCTTAGTACACTTCCT+AGG 0.510935 5.2:-29427148 None:intergenic
AATATGCTCATTGTTATTGG+TGG 0.514731 5.2:+29428270 MS.gene032830:CDS
CCGAACTTCTTGTGTTTGGG+AGG 0.516315 5.2:+29427671 MS.gene032830:CDS
TCTGATGAGGAGCAGCATGC+TGG 0.518838 5.2:+29427334 MS.gene032830:CDS
CCTCCCAAACACAAGAAGTT+CGG 0.521950 5.2:-29427671 None:intergenic
GTGGATGCATTTGCCGAGGA+TGG 0.521975 5.2:+29427597 MS.gene032830:CDS
GCAGAGCCGAACAAACATCT+TGG 0.522841 5.2:-29427769 None:intergenic
CTGAGGATGAACATCATCCT+AGG 0.526740 5.2:+29427131 MS.gene032830:CDS
TATAGATGGAGGAGACTAAA+CGG 0.529185 5.2:+29427502 MS.gene032830:CDS
GTTTATAATTGTGCTGTGAT+GGG 0.533513 5.2:+29428396 MS.gene032830:CDS
TAAACGGTATCATGGAACAT+TGG 0.533894 5.2:+29427518 MS.gene032830:CDS
GAGGAGACTAAACGGTATCA+TGG 0.537620 5.2:+29427510 MS.gene032830:CDS
GAACGAGCGATGTCGATGAA+TGG 0.544102 5.2:+29428219 MS.gene032830:CDS
CGAACTTCTTGTGTTTGGGA+GGG 0.544855 5.2:+29427672 MS.gene032830:CDS
TAGGAAGTGTACTAAGATGT+TGG 0.544939 5.2:+29427150 MS.gene032830:CDS
GAACCCCTACTACTTCGTCC+GGG 0.545858 5.2:-29428057 None:intergenic
ACACCAGAACACATCTTCCT+CGG 0.549483 5.2:-29427913 None:intergenic
GACACACGATTGAGCTGTCT+CGG 0.549997 5.2:-29427396 None:intergenic
TTGTTCGGCTCTGCAAGCCT+TGG 0.557116 5.2:+29427778 MS.gene032830:CDS
CATTGCGGAGGTCCTTCACT+AGG 0.564491 5.2:-29428339 None:intergenic
CTACTAGCTCGAAAACGATC+CGG 0.564520 5.2:+29428366 MS.gene032830:CDS
GAAATTCCTGACATGTCCCC+CGG 0.564869 5.2:+29428039 MS.gene032830:CDS
CTTGTGAAACAGAGAACGAT+TGG 0.567058 5.2:+29427041 MS.gene032830:CDS
GAGCTGTCTCGGTTCATCCT+CGG 0.567515 5.2:-29427385 None:intergenic
AGCAGGTGGTTGTGATTCGG+AGG 0.569771 5.2:+29427816 MS.gene032830:CDS
CAATCGTTTGAAGCCATCCT+CGG 0.574471 5.2:-29427610 None:intergenic
TGTTCTGGTGTATTCATGGA+TGG 0.587848 5.2:+29427925 MS.gene032830:CDS
AGAAAACTGTGGATTACTGT+TGG 0.588100 5.2:+29428186 MS.gene032830:CDS
TGAAATAATCCGAAGCGGCG+AGG 0.588835 5.2:+29427477 MS.gene032830:CDS
ACGACCCAATTCGCCAAAGG+TGG 0.595170 5.2:+29427578 MS.gene032830:CDS
AATTCTTGGGTGCCTAGTGA+AGG 0.596232 5.2:+29428327 MS.gene032830:CDS
GCAGCATGCTGGAGATTCGT+CGG 0.597982 5.2:+29427345 MS.gene032830:CDS
TGCTGCTGATTATGCTGACA+TGG 0.602364 5.2:+29428140 MS.gene032830:CDS
GCGATGTCGATGAATGGTTG+GGG 0.603196 5.2:+29428225 MS.gene032830:CDS
AGCATTCATTCTCATTCCAG+AGG 0.606098 5.2:-29427746 None:intergenic
TGTTATTCAGCAATCTGATG+AGG 0.609072 5.2:+29427321 MS.gene032830:CDS
GTTTGTCAAGGAGTTCATGA+TGG 0.609659 5.2:+29427271 MS.gene032830:CDS
ACTCCTTGACAAACATTCAA+GGG 0.609745 5.2:-29427262 None:intergenic
TCAGCAGAATCAATATTCAT+CGG 0.615157 5.2:-29427112 None:intergenic
GAGCCCTTGAATGTTTGTCA+AGG 0.615186 5.2:+29427259 MS.gene032830:CDS
GGTCTTGCATTTAGGGCATG+CGG 0.616506 5.2:+29428246 MS.gene032830:CDS
ATTGGTGGACCTAGGACTCA+TGG 0.617047 5.2:+29428285 MS.gene032830:CDS
AACCCCTACTACTTCGTCCG+GGG 0.618769 5.2:-29428056 None:intergenic
ATAATTTACAAACCAGAACA+TGG 0.619596 5.2:+29428013 MS.gene032830:CDS
CTCAGAATTGTATAGTTCAG+CGG 0.626222 5.2:-29427854 None:intergenic
CTAGTGAAGGACCTCCGCAA+TGG 0.629280 5.2:+29428340 MS.gene032830:CDS
ACCCCTACTACTTCGTCCGG+GGG 0.630121 5.2:-29428055 None:intergenic
CGAGCTAGTAGACGCCATTG+CGG 0.631973 5.2:-29428354 None:intergenic
TTATCTACAACGGCAATGAG+AGG 0.633005 5.2:-29428108 None:intergenic
GCAGGTGGTTGTGATTCGGA+GGG 0.633783 5.2:+29427817 MS.gene032830:CDS
TCATTGTTATTGGTGGACCT+AGG 0.638584 5.2:+29428277 MS.gene032830:CDS
GGACCTAGGACTCATGGTGA+AGG 0.644982 5.2:+29428291 MS.gene032830:CDS
TTCCGTGAAATAATCCGAAG+CGG 0.645763 5.2:+29427472 MS.gene032830:CDS
GCGGCGAGGTTTATAGATGG+AGG 0.647194 5.2:+29427491 MS.gene032830:CDS
CGTACGACCCAATTCGCCAA+AGG 0.656928 5.2:+29427575 MS.gene032830:CDS
AAAGGTGGATGCATTTGCCG+AGG 0.658304 5.2:+29427593 MS.gene032830:CDS
GCTAGTAGACGCCATTGCGG+AGG 0.660404 5.2:-29428351 None:intergenic
ATACAATTCATTATCTACAA+CGG 0.661324 5.2:-29428118 None:intergenic
TGTCAAGGAGTTCATGATGG+TGG 0.663431 5.2:+29427274 MS.gene032830:CDS
TATGTTGTAGGTGGAATCGG+CGG 0.671001 5.2:+29427955 MS.gene032830:CDS
CGTACGCTTCCCATTCAAGG+AGG 0.678294 5.2:-29427558 None:intergenic
GTACGCTTCCCATTCAAGGA+GGG 0.679998 5.2:-29427557 None:intergenic
TCTACAACGGCAATGAGAGG+CGG 0.681780 5.2:-29428105 None:intergenic
GGAAGTTAAAAGGTATGACA+AGG 0.683430 5.2:+29428161 MS.gene032830:CDS
GATGAATATTGATTCTGCTG+AGG 0.684071 5.2:+29427114 MS.gene032830:CDS
CTAATATCGCAATCTCACCA+AGG 0.689793 5.2:-29427795 None:intergenic
ATGACAAGGAAAGAAAACTG+TGG 0.706266 5.2:+29428175 MS.gene032830:CDS
TCCCGAGCATGAATAAACCG+AGG 0.713762 5.2:+29427896 MS.gene032830:CDS
GATTCAAAGCTTCTTACATG+CGG 0.719497 5.2:+29427982 MS.gene032830:CDS
GAGATTGCGATATTAGCAGG+TGG 0.734472 5.2:+29427802 MS.gene032830:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATACAATTCATTATCTACAA+CGG - chr5.2:29428121-29428140 None:intergenic 20.0%
! ACAATTATAAACGAAGTTAC+CGG - chr5.2:29428388-29428407 None:intergenic 25.0%
! ATAATTTACAAACCAGAACA+TGG + chr5.2:29428013-29428032 MS.gene032830:CDS 25.0%
! TTTCATTGAACTCAATTCTT+GGG + chr5.2:29428314-29428333 MS.gene032830:CDS 25.0%
!! GATGGAAAATTTTATGTTGT+AGG + chr5.2:29427943-29427962 MS.gene032830:CDS 25.0%
ATCTTGTCACATAGTTGAAA+CGG + chr5.2:29427174-29427193 MS.gene032830:CDS 30.0%
GATAAAGAATCTTTAGCTGT+AGG + chr5.2:29427646-29427665 MS.gene032830:CDS 30.0%
GGAAATATGCTCATTGTTAT+TGG + chr5.2:29428267-29428286 MS.gene032830:CDS 30.0%
GTTTATAATTGTGCTGTGAT+GGG + chr5.2:29428396-29428415 MS.gene032830:CDS 30.0%
GTTTCATTGAACTCAATTCT+TGG + chr5.2:29428313-29428332 MS.gene032830:CDS 30.0%
TCAGCAGAATCAATATTCAT+CGG - chr5.2:29427115-29427134 None:intergenic 30.0%
! AATATGCTCATTGTTATTGG+TGG + chr5.2:29428270-29428289 MS.gene032830:CDS 30.0%
! ACAGTCTTTTGACAAATTCA+TGG + chr5.2:29427722-29427741 MS.gene032830:CDS 30.0%
! GGAAAATTTTATGTTGTAGG+TGG + chr5.2:29427946-29427965 MS.gene032830:CDS 30.0%
! TTTTATGTTGTAGGTGGAAT+CGG + chr5.2:29427952-29427971 MS.gene032830:CDS 30.0%
AAACGGTATCATGGAACATT+GGG + chr5.2:29427519-29427538 MS.gene032830:CDS 35.0%
AACATCTTAGTACACTTCCT+AGG - chr5.2:29427151-29427170 None:intergenic 35.0%
AACTCCTTGACAAACATTCA+AGG - chr5.2:29427266-29427285 None:intergenic 35.0%
AATGCTCCAAGATGTTTGTT+CGG + chr5.2:29427763-29427782 MS.gene032830:CDS 35.0%
ACTCCTTGACAAACATTCAA+GGG - chr5.2:29427265-29427284 None:intergenic 35.0%
ATGACAAGGAAAGAAAACTG+TGG + chr5.2:29428175-29428194 MS.gene032830:CDS 35.0%
ATGCTGACATGGAAGTTAAA+AGG + chr5.2:29428151-29428170 MS.gene032830:CDS 35.0%
CGTTTATAATTGTGCTGTGA+TGG + chr5.2:29428395-29428414 MS.gene032830:CDS 35.0%
CTCAGAATTGTATAGTTCAG+CGG - chr5.2:29427857-29427876 None:intergenic 35.0%
CTGGATTTGGACATCAAAAA+TGG + chr5.2:29427082-29427101 MS.gene032830:CDS 35.0%
GATTCAAAGCTTCTTACATG+CGG + chr5.2:29427982-29428001 MS.gene032830:CDS 35.0%
GGATTCTGTTCTTTCTCAAA+CGG + chr5.2:29427222-29427241 MS.gene032830:CDS 35.0%
TAAACGGTATCATGGAACAT+TGG + chr5.2:29427518-29427537 MS.gene032830:CDS 35.0%
TATAGATGGAGGAGACTAAA+CGG + chr5.2:29427502-29427521 MS.gene032830:CDS 35.0%
TATTTCGTTGCAACATCCTA+AGG + chr5.2:29427201-29427220 MS.gene032830:CDS 35.0%
TGAGAAAGAACAGAATCCTT+AGG - chr5.2:29427220-29427239 None:intergenic 35.0%
TGTTATTCAGCAATCTGATG+AGG + chr5.2:29427321-29427340 MS.gene032830:CDS 35.0%
! AGAAAACTGTGGATTACTGT+TGG + chr5.2:29428186-29428205 MS.gene032830:CDS 35.0%
! GGAAGTTAAAAGGTATGACA+AGG + chr5.2:29428161-29428180 MS.gene032830:CDS 35.0%
! TAGGAAGTGTACTAAGATGT+TGG + chr5.2:29427150-29427169 MS.gene032830:CDS 35.0%
!! GATGAATATTGATTCTGCTG+AGG + chr5.2:29427114-29427133 MS.gene032830:CDS 35.0%
ACAAACATTCAAGGGCTCAT+TGG - chr5.2:29427257-29427276 None:intergenic 40.0%
AGCATTCATTCTCATTCCAG+AGG - chr5.2:29427749-29427768 None:intergenic 40.0%
AGGAATTTCTGTCCATGTTC+TGG - chr5.2:29428028-29428047 None:intergenic 40.0%
ATTAGCAGGTGGTTGTGATT+CGG + chr5.2:29427813-29427832 MS.gene032830:CDS 40.0%
CATGAAGTACATGCTGGATT+TGG + chr5.2:29427069-29427088 MS.gene032830:CDS 40.0%
CTAATATCGCAATCTCACCA+AGG - chr5.2:29427798-29427817 None:intergenic 40.0%
CTTGTGAAACAGAGAACGAT+TGG + chr5.2:29427041-29427060 MS.gene032830:CDS 40.0%
GAACCGAACTTCTTGTGTTT+GGG + chr5.2:29427668-29427687 MS.gene032830:CDS 40.0%
GATGTGTTCTGGTGTATTCA+TGG + chr5.2:29427921-29427940 MS.gene032830:CDS 40.0%
GTCTTACATGAAGTACATGC+TGG + chr5.2:29427063-29427082 MS.gene032830:CDS 40.0%
GTTTGTCAAGGAGTTCATGA+TGG + chr5.2:29427271-29427290 MS.gene032830:CDS 40.0%
TGTTCTGGTGTATTCATGGA+TGG + chr5.2:29427925-29427944 MS.gene032830:CDS 40.0%
TTATCTACAACGGCAATGAG+AGG - chr5.2:29428111-29428130 None:intergenic 40.0%
TTCCGTGAAATAATCCGAAG+CGG + chr5.2:29427472-29427491 MS.gene032830:CDS 40.0%
TTCCTCGGTTTATTCATGCT+CGG - chr5.2:29427901-29427920 None:intergenic 40.0%
TTGACAAATTCATGGTCCTC+TGG + chr5.2:29427730-29427749 MS.gene032830:CDS 40.0%
! TCATTGTTATTGGTGGACCT+AGG + chr5.2:29428277-29428296 MS.gene032830:CDS 40.0%
!!! ATTCTGGTTCTCTTTTACCG+AGG + chr5.2:29427368-29427387 MS.gene032830:CDS 40.0%
AAACCGAGGAAGATGTGTTC+TGG + chr5.2:29427910-29427929 MS.gene032830:CDS 45.0%
AAACCTTCACCATGAGTCCT+AGG - chr5.2:29428297-29428316 None:intergenic 45.0%
AATTCTTGGGTGCCTAGTGA+AGG + chr5.2:29428327-29428346 MS.gene032830:CDS 45.0%
ACACCAGAACACATCTTCCT+CGG - chr5.2:29427916-29427935 None:intergenic 45.0%
AGCGATGTCGATGAATGGTT+GGG + chr5.2:29428224-29428243 MS.gene032830:CDS 45.0%
ATCTATAAACCTCGCCGCTT+CGG - chr5.2:29427489-29427508 None:intergenic 45.0%
ATGGTTGGGGTCTTGCATTT+AGG + chr5.2:29428238-29428257 MS.gene032830:CDS 45.0%
CCTCCCAAACACAAGAAGTT+CGG - chr5.2:29427674-29427693 None:intergenic 45.0%
CGAACTTCTTGTGTTTGGGA+GGG + chr5.2:29427672-29427691 MS.gene032830:CDS 45.0%
CGCTGTTCAAGGTCTGATTA+TGG + chr5.2:29427424-29427443 MS.gene032830:CDS 45.0%
CTACTAGCTCGAAAACGATC+CGG + chr5.2:29428366-29428385 MS.gene032830:CDS 45.0%
CTGAGGATGAACATCATCCT+AGG + chr5.2:29427131-29427150 MS.gene032830:CDS 45.0%
GAGATTGCGATATTAGCAGG+TGG + chr5.2:29427802-29427821 MS.gene032830:CDS 45.0%
GAGCCCTTGAATGTTTGTCA+AGG + chr5.2:29427259-29427278 MS.gene032830:CDS 45.0%
GAGGAGACTAAACGGTATCA+TGG + chr5.2:29427510-29427529 MS.gene032830:CDS 45.0%
GGAACCGAACTTCTTGTGTT+TGG + chr5.2:29427667-29427686 MS.gene032830:CDS 45.0%
GGTGAGATTGCGATATTAGC+AGG + chr5.2:29427799-29427818 MS.gene032830:CDS 45.0%
TATGTTGTAGGTGGAATCGG+CGG + chr5.2:29427955-29427974 MS.gene032830:CDS 45.0%
TCCTCGGTTTATTCATGCTC+GGG - chr5.2:29427900-29427919 None:intergenic 45.0%
TGGTTGGGGTCTTGCATTTA+GGG + chr5.2:29428239-29428258 MS.gene032830:CDS 45.0%
TGTCAAGGAGTTCATGATGG+TGG + chr5.2:29427274-29427293 MS.gene032830:CDS 45.0%
! CAATCGTTTGAAGCCATCCT+CGG - chr5.2:29427613-29427632 None:intergenic 45.0%
! TGCTGCTGATTATGCTGACA+TGG + chr5.2:29428140-29428159 MS.gene032830:CDS 45.0%
AAAGGTGGATGCATTTGCCG+AGG + chr5.2:29427593-29427612 MS.gene032830:CDS 50.0%
AGAACCCCTACTACTTCGTC+CGG - chr5.2:29428061-29428080 None:intergenic 50.0%
CCGAACTTCTTGTGTTTGGG+AGG + chr5.2:29427671-29427690 MS.gene032830:CDS 50.0%
CGCCGCTTCGGATTATTTCA+CGG - chr5.2:29427477-29427496 None:intergenic 50.0%
GAAATTCCTGACATGTCCCC+CGG + chr5.2:29428039-29428058 MS.gene032830:CDS 50.0%
GAACGAGCGATGTCGATGAA+TGG + chr5.2:29428219-29428238 MS.gene032830:CDS 50.0%
GAAGCGGCGAGGTTTATAGA+TGG + chr5.2:29427488-29427507 MS.gene032830:CDS 50.0%
GACACACGATTGAGCTGTCT+CGG - chr5.2:29427399-29427418 None:intergenic 50.0%
GAGCGATGTCGATGAATGGT+TGG + chr5.2:29428223-29428242 MS.gene032830:CDS 50.0%
GCAGAGCCGAACAAACATCT+TGG - chr5.2:29427772-29427791 None:intergenic 50.0%
GCATCCACCTTTGGCGAATT+GGG - chr5.2:29427585-29427604 None:intergenic 50.0%
GCGATGTCGATGAATGGTTG+GGG + chr5.2:29428225-29428244 MS.gene032830:CDS 50.0%
GTACGCTTCCCATTCAAGGA+GGG - chr5.2:29427560-29427579 None:intergenic 50.0%
TCCCGAGCATGAATAAACCG+AGG + chr5.2:29427896-29427915 MS.gene032830:CDS 50.0%
TCGGCAAATGCATCCACCTT+TGG - chr5.2:29427594-29427613 None:intergenic 50.0%
TCTACAACGGCAATGAGAGG+CGG - chr5.2:29428108-29428127 None:intergenic 50.0%
TGAAATAATCCGAAGCGGCG+AGG + chr5.2:29427477-29427496 MS.gene032830:CDS 50.0%
TGCATCCACCTTTGGCGAAT+TGG - chr5.2:29427586-29427605 None:intergenic 50.0%
TGTGTCTCAGTCGCTGTTCA+AGG + chr5.2:29427413-29427432 MS.gene032830:CDS 50.0%
TTCATCGACATCGCTCGTTC+TGG - chr5.2:29428219-29428238 None:intergenic 50.0%
! ATTGGTGGACCTAGGACTCA+TGG + chr5.2:29428285-29428304 MS.gene032830:CDS 50.0%
! GGTCTTGCATTTAGGGCATG+CGG + chr5.2:29428246-29428265 MS.gene032830:CDS 50.0%
!! GTCGTTGCTGTGTTGTTTCG+AGG + chr5.2:29427005-29427024 MS.gene032830:CDS 50.0%
AACCCCTACTACTTCGTCCG+GGG - chr5.2:29428059-29428078 None:intergenic 55.0%
ACGACCCAATTCGCCAAAGG+TGG + chr5.2:29427578-29427597 MS.gene032830:CDS 55.0%
CATTGCGGAGGTCCTTCACT+AGG - chr5.2:29428342-29428361 None:intergenic 55.0%
CGAGCTAGTAGACGCCATTG+CGG - chr5.2:29428357-29428376 None:intergenic 55.0%
CGTACGACCCAATTCGCCAA+AGG + chr5.2:29427575-29427594 MS.gene032830:CDS 55.0%
CGTACGCTTCCCATTCAAGG+AGG - chr5.2:29427561-29427580 None:intergenic 55.0%
CTAGTGAAGGACCTCCGCAA+TGG + chr5.2:29428340-29428359 MS.gene032830:CDS 55.0%
CTCGTGTGCCCTCCTTGAAT+GGG + chr5.2:29427549-29427568 MS.gene032830:CDS 55.0%
GAACCCCTACTACTTCGTCC+GGG - chr5.2:29428060-29428079 None:intergenic 55.0%
GAGCTGTCTCGGTTCATCCT+CGG - chr5.2:29427388-29427407 None:intergenic 55.0%
GCAGCATGCTGGAGATTCGT+CGG + chr5.2:29427345-29427364 MS.gene032830:CDS 55.0%
GCGGCGAGGTTTATAGATGG+AGG + chr5.2:29427491-29427510 MS.gene032830:CDS 55.0%
GCTGGAGATTCGTCGGATTC+TGG + chr5.2:29427352-29427371 MS.gene032830:CDS 55.0%
GGACCTAGGACTCATGGTGA+AGG + chr5.2:29428291-29428310 MS.gene032830:CDS 55.0%
GGTCGTACGCTTCCCATTCA+AGG - chr5.2:29427564-29427583 None:intergenic 55.0%
GTGGATGCATTTGCCGAGGA+TGG + chr5.2:29427597-29427616 MS.gene032830:CDS 55.0%
TCTCGTGTGCCCTCCTTGAA+TGG + chr5.2:29427548-29427567 MS.gene032830:CDS 55.0%
TCTGATGAGGAGCAGCATGC+TGG + chr5.2:29427334-29427353 MS.gene032830:CDS 55.0%
TTGTTCGGCTCTGCAAGCCT+TGG + chr5.2:29427778-29427797 MS.gene032830:CDS 55.0%
! AGCAGGTGGTTGTGATTCGG+AGG + chr5.2:29427816-29427835 MS.gene032830:CDS 55.0%
! GCAGGTGGTTGTGATTCGGA+GGG + chr5.2:29427817-29427836 MS.gene032830:CDS 55.0%
ACCCCTACTACTTCGTCCGG+GGG - chr5.2:29428058-29428077 None:intergenic 60.0%
GCTAGTAGACGCCATTGCGG+AGG - chr5.2:29428354-29428373 None:intergenic 60.0%
GTCCCCCGGACGAAGTAGTA+GGG + chr5.2:29428053-29428072 MS.gene032830:CDS 60.0%
TCCCCCGGACGAAGTAGTAG+GGG + chr5.2:29428054-29428073 MS.gene032830:CDS 60.0%
TGAGATGCCTGCTGCAACCG+AGG + chr5.2:29428080-29428099 MS.gene032830:CDS 60.0%
TGTCCCCCGGACGAAGTAGT+AGG + chr5.2:29428052-29428071 MS.gene032830:CDS 60.0%
CTTCGTCCGGGGGACATGTC+AGG - chr5.2:29428048-29428067 None:intergenic 65.0%
GGCAATGAGAGGCGGTGCCT+CGG - chr5.2:29428100-29428119 None:intergenic 65.0%
GGCGGTGCCTCGGTTGCAGC+AGG - chr5.2:29428090-29428109 None:intergenic 75.0%


Chromosome Type Strat End Strand Name
chr5.2 gene 29426995 29428425 29426995 ID=MS.gene032830
chr5.2 mRNA 29426995 29428425 29426995 ID=MS.gene032830.t1;Parent=MS.gene032830
chr5.2 exon 29426995 29428425 29426995 ID=MS.gene032830.t1.exon1;Parent=MS.gene032830.t1
chr5.2 CDS 29426995 29428425 29426995 ID=cds.MS.gene032830.t1;Parent=MS.gene032830.t1
Gene Sequence

>MS.gene032830

ATGTTGGAGGGTCGTTGCTGTGTTGTTTCGAGGTTGTTTTGTAGCACTTGTGAAACAGAGAACGATTGGTCTTACATGAAGTACATGCTGGATTTGGACATCAAAAATGGCAAAAGACCGATGAATATTGATTCTGCTGAGGATGAACATCATCCTAGGAAGTGTACTAAGATGTTGGAATCTTGTCACATAGTTGAAACGGTTTGTATTTCGTTGCAACATCCTAAGGATTCTGTTCTTTCTCAAACGGATCAGAAAACCAATGAGCCCTTGAATGTTTGTCAAGGAGTTCATGATGGTGGTGATTCAATAGATTCATCAGATTCTGTTATTCAGCAATCTGATGAGGAGCAGCATGCTGGAGATTCGTCGGATTCTGGTTCTCTTTTACCGAGGATGAACCGAGACAGCTCAATCGTGTGTCTCAGTCGCTGTTCAAGGTCTGATTATGGTTCGCTTGCTTCGCTGAATAGAAGCTTCCGTGAAATAATCCGAAGCGGCGAGGTTTATAGATGGAGGAGACTAAACGGTATCATGGAACATTGGGTTTATTTCTCGTGTGCCCTCCTTGAATGGGAAGCGTACGACCCAATTCGCCAAAGGTGGATGCATTTGCCGAGGATGGCTTCAAACGATTGTTTCATGTGTTCTGATAAAGAATCTTTAGCTGTAGGAACCGAACTTCTTGTGTTTGGGAGGGAGCTTAGATCTCATGTGATATATAGATACAGTCTTTTGACAAATTCATGGTCCTCTGGAATGAGAATGAATGCTCCAAGATGTTTGTTCGGCTCTGCAAGCCTTGGTGAGATTGCGATATTAGCAGGTGGTTGTGATTCGGAGGGACGTATACTTGACTCCGCTGAACTATACAATTCTGAGACGCAAACATTTGAACTACTCCCGAGCATGAATAAACCGAGGAAGATGTGTTCTGGTGTATTCATGGATGGAAAATTTTATGTTGTAGGTGGAATCGGCGGACGCGATTCAAAGCTTCTTACATGCGGTGAAGAGTATAATTTACAAACCAGAACATGGACAGAAATTCCTGACATGTCCCCCGGACGAAGTAGTAGGGGTTCTGAGATGCCTGCTGCAACCGAGGCACCGCCTCTCATTGCCGTTGTAGATAATGAATTGTATGCTGCTGATTATGCTGACATGGAAGTTAAAAGGTATGACAAGGAAAGAAAACTGTGGATTACTGTTGGTAGACTTCCAGAACGAGCGATGTCGATGAATGGTTGGGGTCTTGCATTTAGGGCATGCGGAAATATGCTCATTGTTATTGGTGGACCTAGGACTCATGGTGAAGGTTTCATTGAACTCAATTCTTGGGTGCCTAGTGAAGGACCTCCGCAATGGCGTCTACTAGCTCGAAAACGATCCGGTAACTTCGTTTATAATTGTGCTGTGATGGGTTGCTGA
Protein sequence

>MS.gene032830.t1

MLEGRCCVVSRLFCSTCETENDWSYMKYMLDLDIKNGKRPMNIDSAEDEHHPRKCTKMLESCHIVETVCISLQHPKDSVLSQTDQKTNEPLNVCQGVHDGGDSIDSSDSVIQQSDEEQHAGDSSDSGSLLPRMNRDSSIVCLSRCSRSDYGSLASLNRSFREIIRSGEVYRWRRLNGIMEHWVYFSCALLEWEAYDPIRQRWMHLPRMASNDCFMCSDKESLAVGTELLVFGRELRSHVIYRYSLLTNSWSSGMRMNAPRCLFGSASLGEIAILAGGCDSEGRILDSAELYNSETQTFELLPSMNKPRKMCSGVFMDGKFYVVGGIGGRDSKLLTCGEEYNLQTRTWTEIPDMSPGRSSRGSEMPAATEAPPLIAVVDNELYAADYADMEVKRYDKERKLWITVGRLPERAMSMNGWGLAFRACGNMLIVIGGPRTHGEGFIELNSWVPSEGPPQWRLLARKRSGNFVYNCAVMGC