Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene032887.t1 | XP_003613754.1 | 93.3 | 225 | 15 | 0 | 1 | 225 | 1 | 225 | 4.70E-119 | 437.2 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene032887.t1 | Q9FUT0 | 44.1 | 222 | 121 | 2 | 3 | 221 | 4 | 225 | 4.2e-52 | 206.1 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene032887.t1 | G7KDY4 | 93.3 | 225 | 15 | 0 | 1 | 225 | 1 | 225 | 3.4e-119 | 437.2 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene032887 | MS.gene070564 | PPI |
| MS.gene032887 | MS.gene95067 | PPI |
| MS.gene032887 | MS.gene012776 | PPI |
| MS.gene032887 | MS.gene032888 | PPI |
| MS.gene032887 | MS.gene042064 | PPI |
| MS.gene032887 | MS.gene85927 | PPI |
| MS.gene032887 | MS.gene77424 | PPI |
| MS.gene032887 | MS.gene77425 | PPI |
| MS.gene032887 | MS.gene53154 | PPI |
| MS.gene032887 | MS.gene012777 | PPI |
| MS.gene032887 | MS.gene43462 | PPI |
| MS.gene032887 | MS.gene95066 | PPI |
| MS.gene032887 | MS.gene43463 | PPI |
| MS.gene032887 | MS.gene55353 | PPI |
| MS.gene78610 | MS.gene032887 | PPI |
| MS.gene032887 | MS.gene042063 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene032887.t1 | MTR_5g040430 | 93.333 | 225 | 15 | 0 | 1 | 225 | 1 | 225 | 3.41e-158 | 437 |
| MS.gene032887.t1 | MTR_4g019780 | 49.767 | 215 | 102 | 2 | 7 | 221 | 8 | 216 | 1.60e-67 | 207 |
| MS.gene032887.t1 | MTR_4g019790 | 43.243 | 222 | 118 | 4 | 1 | 221 | 1 | 215 | 1.34e-60 | 189 |
| MS.gene032887.t1 | MTR_7g065660 | 41.892 | 222 | 121 | 3 | 1 | 221 | 1 | 215 | 9.03e-58 | 182 |
| MS.gene032887.t1 | MTR_7g065600 | 41.892 | 222 | 121 | 3 | 1 | 221 | 1 | 215 | 1.20e-56 | 179 |
| MS.gene032887.t1 | MTR_7g065630 | 40.991 | 222 | 119 | 4 | 1 | 221 | 19 | 229 | 2.22e-56 | 179 |
| MS.gene032887.t1 | MTR_1g090070 | 40.359 | 223 | 124 | 4 | 4 | 223 | 6 | 222 | 3.55e-56 | 179 |
| MS.gene032887.t1 | MTR_7g065720 | 41.256 | 223 | 122 | 3 | 1 | 221 | 1 | 216 | 8.46e-56 | 177 |
| MS.gene032887.t1 | MTR_1g090060 | 42.202 | 218 | 122 | 2 | 6 | 223 | 2 | 215 | 1.42e-55 | 177 |
| MS.gene032887.t1 | MTR_3g099757 | 42.986 | 221 | 118 | 3 | 1 | 221 | 1 | 213 | 1.68e-55 | 177 |
| MS.gene032887.t1 | MTR_7g065590 | 40.991 | 222 | 123 | 3 | 1 | 221 | 1 | 215 | 1.72e-55 | 177 |
| MS.gene032887.t1 | MTR_7g065750 | 43.049 | 223 | 118 | 4 | 1 | 221 | 1 | 216 | 2.55e-55 | 176 |
| MS.gene032887.t1 | MTR_7g065740 | 40.807 | 223 | 123 | 3 | 1 | 221 | 1 | 216 | 1.71e-54 | 174 |
| MS.gene032887.t1 | MTR_7g065230 | 42.793 | 222 | 114 | 4 | 1 | 221 | 1 | 210 | 2.09e-54 | 174 |
| MS.gene032887.t1 | MTR_4g059730 | 43.182 | 220 | 119 | 5 | 5 | 223 | 2 | 216 | 2.09e-54 | 174 |
| MS.gene032887.t1 | MTR_7g065290 | 41.892 | 222 | 121 | 3 | 1 | 221 | 1 | 215 | 3.08e-54 | 173 |
| MS.gene032887.t1 | MTR_7g065265 | 41.284 | 218 | 120 | 3 | 1 | 217 | 1 | 211 | 9.43e-54 | 172 |
| MS.gene032887.t1 | MTR_8g087410 | 42.130 | 216 | 117 | 3 | 1 | 216 | 2 | 209 | 3.61e-53 | 171 |
| MS.gene032887.t1 | MTR_7g065270 | 40.826 | 218 | 121 | 3 | 1 | 217 | 1 | 211 | 3.89e-52 | 168 |
| MS.gene032887.t1 | MTR_8g087425 | 39.631 | 217 | 125 | 2 | 5 | 221 | 3 | 213 | 3.37e-51 | 166 |
| MS.gene032887.t1 | MTR_1g090100 | 41.204 | 216 | 123 | 2 | 8 | 223 | 3 | 214 | 8.63e-51 | 164 |
| MS.gene032887.t1 | MTR_2g070150 | 37.619 | 210 | 124 | 2 | 5 | 214 | 2 | 204 | 1.62e-50 | 163 |
| MS.gene032887.t1 | MTR_7g065260 | 41.038 | 212 | 119 | 2 | 1 | 212 | 8 | 213 | 6.24e-50 | 162 |
| MS.gene032887.t1 | MTR_2g070060 | 36.323 | 223 | 132 | 3 | 5 | 224 | 2 | 217 | 1.24e-49 | 161 |
| MS.gene032887.t1 | MTR_7g065640 | 40.090 | 222 | 107 | 4 | 1 | 221 | 1 | 197 | 1.73e-49 | 160 |
| MS.gene032887.t1 | MTR_2g070200 | 37.799 | 209 | 122 | 3 | 5 | 212 | 2 | 203 | 6.65e-49 | 160 |
| MS.gene032887.t1 | MTR_6g080440 | 40.284 | 211 | 120 | 2 | 6 | 216 | 2 | 206 | 8.38e-49 | 159 |
| MS.gene032887.t1 | MTR_1g090150 | 40.187 | 214 | 123 | 3 | 7 | 220 | 3 | 211 | 9.76e-49 | 159 |
| MS.gene032887.t1 | MTR_2g070180 | 36.019 | 211 | 128 | 2 | 5 | 215 | 2 | 205 | 1.59e-48 | 159 |
| MS.gene032887.t1 | MTR_2g070130 | 36.323 | 223 | 132 | 3 | 5 | 224 | 2 | 217 | 2.09e-48 | 158 |
| MS.gene032887.t1 | MTR_1g090090 | 40.187 | 214 | 120 | 4 | 6 | 217 | 2 | 209 | 8.35e-48 | 157 |
| MS.gene032887.t1 | MTR_7g065710 | 38.462 | 208 | 116 | 4 | 8 | 214 | 5 | 201 | 1.79e-47 | 156 |
| MS.gene032887.t1 | MTR_2g070120 | 39.151 | 212 | 120 | 4 | 5 | 215 | 2 | 205 | 5.61e-47 | 155 |
| MS.gene032887.t1 | MTR_2g070140 | 37.129 | 202 | 120 | 2 | 21 | 222 | 2 | 196 | 3.17e-46 | 152 |
| MS.gene032887.t1 | MTR_7g065680 | 40.090 | 222 | 121 | 4 | 1 | 221 | 1 | 211 | 4.35e-46 | 152 |
| MS.gene032887.t1 | MTR_8g061950 | 39.545 | 220 | 129 | 3 | 6 | 222 | 4 | 222 | 6.59e-46 | 152 |
| MS.gene032887.t1 | MTR_5g037380 | 36.744 | 215 | 132 | 3 | 5 | 216 | 3 | 216 | 1.22e-45 | 151 |
| MS.gene032887.t1 | MTR_7g065700 | 41.860 | 215 | 113 | 5 | 1 | 214 | 1 | 204 | 1.58e-45 | 151 |
| MS.gene032887.t1 | MTR_2g070210 | 35.111 | 225 | 134 | 4 | 5 | 224 | 2 | 219 | 2.82e-44 | 148 |
| MS.gene032887.t1 | MTR_1g115195 | 35.780 | 218 | 131 | 4 | 6 | 220 | 2 | 213 | 7.53e-44 | 147 |
| MS.gene032887.t1 | MTR_2g070070 | 35.426 | 223 | 134 | 3 | 5 | 224 | 2 | 217 | 4.09e-43 | 145 |
| MS.gene032887.t1 | MTR_8g056940 | 36.098 | 205 | 124 | 2 | 5 | 209 | 2 | 199 | 8.71e-43 | 144 |
| MS.gene032887.t1 | MTR_2g070110 | 36.771 | 223 | 130 | 5 | 5 | 224 | 2 | 216 | 7.25e-42 | 141 |
| MS.gene032887.t1 | MTR_5g076900 | 36.364 | 209 | 124 | 4 | 8 | 215 | 7 | 207 | 1.37e-40 | 138 |
| MS.gene032887.t1 | MTR_3g467420 | 33.173 | 208 | 131 | 3 | 6 | 212 | 8 | 208 | 2.22e-40 | 138 |
| MS.gene032887.t1 | MTR_3g467430 | 33.333 | 210 | 132 | 3 | 4 | 212 | 6 | 208 | 3.84e-39 | 135 |
| MS.gene032887.t1 | MTR_0186s0030 | 44.444 | 135 | 75 | 0 | 5 | 139 | 2 | 136 | 2.16e-37 | 127 |
| MS.gene032887.t1 | MTR_4g124130 | 38.919 | 185 | 105 | 3 | 6 | 187 | 3 | 182 | 3.29e-37 | 130 |
| MS.gene032887.t1 | MTR_2g072120 | 44.286 | 70 | 39 | 0 | 51 | 120 | 2 | 71 | 2.44e-20 | 82.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene032887.t1 | AT1G74590 | 42.727 | 220 | 125 | 1 | 1 | 220 | 1 | 219 | 2.36e-66 | 204 |
| MS.gene032887.t1 | AT5G62480 | 44.444 | 225 | 121 | 3 | 1 | 221 | 1 | 225 | 8.41e-66 | 203 |
| MS.gene032887.t1 | AT3G09270 | 42.466 | 219 | 120 | 2 | 8 | 225 | 7 | 220 | 2.54e-58 | 184 |
| MS.gene032887.t1 | AT2G29450 | 45.622 | 217 | 106 | 6 | 4 | 216 | 3 | 211 | 1.53e-54 | 174 |
| MS.gene032887.t1 | AT2G29490 | 38.767 | 227 | 130 | 4 | 1 | 225 | 1 | 220 | 1.41e-53 | 172 |
| MS.gene032887.t1 | AT2G29480 | 39.556 | 225 | 127 | 4 | 1 | 223 | 1 | 218 | 3.62e-53 | 171 |
| MS.gene032887.t1 | AT2G29460 | 37.333 | 225 | 132 | 4 | 1 | 223 | 1 | 218 | 1.81e-52 | 169 |
| MS.gene032887.t1 | AT2G29440 | 41.071 | 224 | 122 | 6 | 1 | 222 | 1 | 216 | 4.36e-52 | 168 |
| MS.gene032887.t1 | AT2G29420 | 38.073 | 218 | 127 | 3 | 5 | 221 | 7 | 217 | 4.53e-51 | 166 |
| MS.gene032887.t1 | AT2G29470 | 38.326 | 227 | 130 | 5 | 1 | 224 | 1 | 220 | 4.58e-50 | 163 |
| MS.gene032887.t1 | AT5G62480 | 38.222 | 225 | 109 | 4 | 1 | 221 | 1 | 199 | 1.26e-48 | 159 |
| MS.gene032887.t1 | AT5G62480 | 37.778 | 225 | 109 | 4 | 1 | 221 | 1 | 198 | 6.58e-48 | 157 |
| MS.gene032887.t1 | AT1G78380 | 34.434 | 212 | 132 | 2 | 5 | 216 | 2 | 206 | 7.13e-47 | 154 |
| MS.gene032887.t1 | AT1G10370 | 37.900 | 219 | 135 | 1 | 5 | 222 | 3 | 221 | 2.15e-46 | 154 |
| MS.gene032887.t1 | AT1G78320 | 34.742 | 213 | 132 | 2 | 7 | 219 | 4 | 209 | 6.53e-46 | 152 |
| MS.gene032887.t1 | AT1G17180 | 35.849 | 212 | 129 | 2 | 5 | 216 | 2 | 206 | 1.20e-45 | 151 |
| MS.gene032887.t1 | AT1G10360 | 37.850 | 214 | 130 | 3 | 5 | 216 | 3 | 215 | 1.52e-44 | 149 |
| MS.gene032887.t1 | AT1G53680 | 38.428 | 229 | 129 | 5 | 1 | 224 | 1 | 222 | 2.27e-44 | 148 |
| MS.gene032887.t1 | AT1G78340 | 36.872 | 179 | 108 | 1 | 5 | 183 | 2 | 175 | 4.18e-44 | 147 |
| MS.gene032887.t1 | AT1G27130 | 36.406 | 217 | 134 | 3 | 4 | 217 | 3 | 218 | 5.50e-44 | 147 |
| MS.gene032887.t1 | AT1G17170 | 36.279 | 215 | 129 | 3 | 5 | 219 | 2 | 208 | 6.09e-44 | 147 |
| MS.gene032887.t1 | AT1G78370 | 32.057 | 209 | 135 | 2 | 9 | 217 | 6 | 207 | 1.65e-43 | 145 |
| MS.gene032887.t1 | AT1G69930 | 36.190 | 210 | 132 | 2 | 8 | 216 | 13 | 221 | 7.40e-43 | 145 |
| MS.gene032887.t1 | AT3G43800 | 34.513 | 226 | 137 | 5 | 1 | 223 | 1 | 218 | 2.13e-42 | 143 |
| MS.gene032887.t1 | AT1G59670 | 37.220 | 223 | 125 | 6 | 1 | 215 | 1 | 216 | 1.49e-41 | 141 |
| MS.gene032887.t1 | AT1G78360 | 33.796 | 216 | 135 | 4 | 5 | 219 | 2 | 210 | 1.06e-40 | 139 |
| MS.gene032887.t1 | AT1G69920 | 34.906 | 212 | 133 | 4 | 2 | 210 | 30 | 239 | 1.02e-39 | 137 |
| MS.gene032887.t1 | AT1G17190 | 31.604 | 212 | 138 | 2 | 5 | 216 | 3 | 207 | 2.45e-39 | 135 |
| MS.gene032887.t1 | AT1G59700 | 37.900 | 219 | 131 | 5 | 1 | 216 | 1 | 217 | 4.72e-39 | 135 |
| MS.gene032887.t1 | AT1G27140 | 33.482 | 224 | 144 | 3 | 4 | 223 | 3 | 225 | 1.15e-37 | 131 |
| MS.gene032887.t1 | AT1G78320 | 29.108 | 213 | 117 | 3 | 7 | 219 | 4 | 182 | 1.75e-30 | 111 |
Find 61 sgRNAs with CRISPR-Local
Find 111 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTGAATACATCGATGAAATT+TGG | 0.107039 | 5.4:+30105941 | MS.gene032887:CDS |
| CTTCCTTTGTGCACAAGAAT+TGG | 0.239157 | 5.4:-30105892 | None:intergenic |
| AAGGTATACCCTTCACTTTA+AGG | 0.271772 | 5.4:-30105795 | None:intergenic |
| TTCTCTCTTCTCCTCGAGAT+TGG | 0.307184 | 5.4:-30106698 | None:intergenic |
| TGAATACATCGATGAAATTT+GGG | 0.316149 | 5.4:+30105942 | MS.gene032887:CDS |
| TCACCAGAGGATGTTCCTTC+AGG | 0.317622 | 5.4:-30106941 | None:intergenic |
| AGGATCCTCTGGCAAGAGTT+TGG | 0.331001 | 5.4:-30105974 | None:intergenic |
| AAGTTGTGTTGTTGGGAAAC+TGG | 0.356374 | 5.4:+30105740 | MS.gene032887:CDS |
| GCGTTTCGCCATTGAAGAAT+TGG | 0.361541 | 5.4:-30106797 | None:intergenic |
| GTACAATCCTGTCCATAAAA+AGG | 0.369292 | 5.4:+30105867 | MS.gene032887:CDS |
| AGGTATACCCTTCACTTTAA+GGG | 0.391035 | 5.4:-30105794 | None:intergenic |
| GGACAGGATTGTACTTTAAG+AGG | 0.391747 | 5.4:-30105858 | None:intergenic |
| GGATCCTCTGGCAAGAGTTT+GGG | 0.395079 | 5.4:-30105973 | None:intergenic |
| TTCCTTTGTGCACAAGAATT+GGG | 0.404729 | 5.4:-30105891 | None:intergenic |
| CGGACTTTAGCCCTTTGATA+AGG | 0.406040 | 5.4:-30105994 | None:intergenic |
| GCCCTTTGATAAGGATCCTC+TGG | 0.413467 | 5.4:-30105985 | None:intergenic |
| ATACTTGGGGTGTTTGAAGA+AGG | 0.446735 | 5.4:+30106747 | MS.gene032887:CDS |
| TTTAAGGGCTAGTTCTACTT+TGG | 0.446812 | 5.4:-30105779 | None:intergenic |
| TACTTGGGGTGTTTGAAGAA+GGG | 0.448054 | 5.4:+30106748 | MS.gene032887:CDS |
| AAGCAATTCCAATTCTTCAA+TGG | 0.449699 | 5.4:+30106789 | MS.gene032887:CDS |
| CACCAGAGGATGTTCCTTCA+GGG | 0.461065 | 5.4:-30106940 | None:intergenic |
| TGCCCTGAAGGAACATCCTC+TGG | 0.468440 | 5.4:+30106938 | MS.gene032887:CDS |
| TGGAATATGCGGTAGCTACT+AGG | 0.468988 | 5.4:-30106678 | None:intergenic |
| GGCCTCTTGAAATGCTTCAT+AGG | 0.472305 | 5.4:-30106859 | None:intergenic |
| TCACTTGTTTCTTCACCCAT+TGG | 0.476720 | 5.4:-30105718 | None:intergenic |
| TACTTTCTGATCAAAGTAGT+TGG | 0.483393 | 5.4:-30106025 | None:intergenic |
| AACAAGTGAAGTTGTGTTGT+TGG | 0.484549 | 5.4:+30105732 | MS.gene032887:CDS |
| GAAGACATGGAAGAGATACT+TGG | 0.494020 | 5.4:+30106732 | MS.gene032887:CDS |
| ACAAGTGAAGTTGTGTTGTT+GGG | 0.494791 | 5.4:+30105733 | MS.gene032887:CDS |
| TCTTCGTCCACATACTTGTA+AGG | 0.502980 | 5.4:-30105814 | None:intergenic |
| ACTTGGGGTGTTTGAAGAAG+GGG | 0.504475 | 5.4:+30106749 | MS.gene032887:CDS |
| GCCAGAGGATCCTTATCAAA+GGG | 0.523043 | 5.4:+30105984 | MS.gene032887:CDS |
| AGTTGTGTTGTTGGGAAACT+GGG | 0.523666 | 5.4:+30105741 | MS.gene032887:CDS |
| GACAGGATTGTACTTTAAGA+GGG | 0.528461 | 5.4:-30105857 | None:intergenic |
| AAAGAAAGCTGCAGAAGACA+TGG | 0.529969 | 5.4:+30106719 | MS.gene032887:CDS |
| GGTGTTTGAAGAAGGGGTTA+AGG | 0.532545 | 5.4:+30106755 | MS.gene032887:CDS |
| AAGACATGGAAGAGATACTT+GGG | 0.539650 | 5.4:+30106733 | MS.gene032887:CDS |
| ACTTCCTCCTCATGACAAGT+TGG | 0.553330 | 5.4:+30106971 | MS.gene032887:CDS |
| CAATTCTTGTGCACAAAGGA+AGG | 0.554742 | 5.4:+30105893 | MS.gene032887:CDS |
| GGGTATACCTTACAAGTATG+TGG | 0.561613 | 5.4:+30105807 | MS.gene032887:CDS |
| AGAACTAGCCCTTAAAGTGA+AGG | 0.562510 | 5.4:+30105786 | MS.gene032887:CDS |
| TCCTCCTCATGACAAGTTGG+TGG | 0.565432 | 5.4:+30106974 | MS.gene032887:CDS |
| CACCTATGAAGCATTTCAAG+AGG | 0.567937 | 5.4:+30106857 | MS.gene032887:CDS |
| TGCCAGAGGATCCTTATCAA+AGG | 0.569024 | 5.4:+30105983 | MS.gene032887:CDS |
| GAAGGAACATCCTCTGGTGA+AGG | 0.571290 | 5.4:+30106944 | MS.gene032887:CDS |
| GAACTAGCCCTTAAAGTGAA+GGG | 0.575201 | 5.4:+30105787 | MS.gene032887:CDS |
| TTCTTCAATGGCGAAACGCT+AGG | 0.575394 | 5.4:+30106801 | MS.gene032887:CDS |
| GCCACCAACTTGTCATGAGG+AGG | 0.584492 | 5.4:-30106975 | None:intergenic |
| CGTGAAGACCTCTACATCAC+AGG | 0.591485 | 5.4:-30106880 | None:intergenic |
| CATGTGGGTGAATGCCCTGA+AGG | 0.604982 | 5.4:+30106926 | MS.gene032887:CDS |
| TCAAGAGGCCTGTGATGTAG+AGG | 0.605424 | 5.4:+30106872 | MS.gene032887:CDS |
| TTGGCCACCAACTTGTCATG+AGG | 0.608148 | 5.4:-30106978 | None:intergenic |
| TTCATAGGTGCAAGAAGTCG+CGG | 0.631066 | 5.4:-30106844 | None:intergenic |
| GCTAGGACTCCTCGACATTG+TGG | 0.631683 | 5.4:+30106818 | MS.gene032887:CDS |
| GTCCCAATTCTTGTGCACAA+AGG | 0.633741 | 5.4:+30105889 | MS.gene032887:CDS |
| CTCCTCGAGATTGGAATATG+CGG | 0.637949 | 5.4:-30106689 | None:intergenic |
| GGAAGTGTTTCCTTCACCAG+AGG | 0.655838 | 5.4:-30106954 | None:intergenic |
| TACCGCATATTCCAATCTCG+AGG | 0.668331 | 5.4:+30106687 | MS.gene032887:CDS |
| TAGTCCCAAACTCTTGCCAG+AGG | 0.676520 | 5.4:+30105969 | MS.gene032887:CDS |
| TCGCGGCTACCACAATGTCG+AGG | 0.706634 | 5.4:-30106827 | None:intergenic |
| AGACATGGAAGAGATACTTG+GGG | 0.746381 | 5.4:+30106734 | MS.gene032887:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATTTAAATATAAGTAGAAAA+GGG | - | chr5.4:30106121-30106140 | None:intergenic | 10.0% |
| !! | TATTTAAATATAAGTAGAAA+AGG | - | chr5.4:30106122-30106141 | None:intergenic | 10.0% |
| !!! | TCCAATAATACTTTTTATTT+TGG | - | chr5.4:30107000-30107019 | None:intergenic | 15.0% |
| !! | ATTGGTAAGTTACTTAAAAT+TGG | - | chr5.4:30106386-30106405 | None:intergenic | 20.0% |
| !!! | AGATTCTAAAAACATTATCT+TGG | + | chr5.4:30106244-30106263 | MS.gene032887:intron | 20.0% |
| !!! | GCCAAAATAAAAAGTATTAT+TGG | + | chr5.4:30106996-30107015 | MS.gene032887:CDS | 20.0% |
| !!! | TGCTCTAACAAATATTTTAA+CGG | - | chr5.4:30106363-30106382 | None:intergenic | 20.0% |
| !!! | TGTCTTCTCTTAATAATTTT+AGG | - | chr5.4:30106284-30106303 | None:intergenic | 20.0% |
| ! | AAGTAACTTACCAATAGTTA+TGG | + | chr5.4:30106391-30106410 | MS.gene032887:intron | 25.0% |
| ! | AATAGTTATGGAGGTAAAAT+AGG | + | chr5.4:30106403-30106422 | MS.gene032887:intron | 25.0% |
| ! | TGAATACATCGATGAAATTT+GGG | + | chr5.4:30105942-30105961 | MS.gene032887:CDS | 25.0% |
| ! | TTGAATACATCGATGAAATT+TGG | + | chr5.4:30105941-30105960 | MS.gene032887:CDS | 25.0% |
| !! | TAAGTCTCTAAGGATAAAAT+TGG | - | chr5.4:30106616-30106635 | None:intergenic | 25.0% |
| !! | TATTTTACCTCCATAACTAT+TGG | - | chr5.4:30106404-30106423 | None:intergenic | 25.0% |
| !!! | GCTCTAACAAATATTTTAAC+GGG | - | chr5.4:30106362-30106381 | None:intergenic | 25.0% |
| AAGCAATTCCAATTCTTCAA+TGG | + | chr5.4:30106789-30106808 | MS.gene032887:CDS | 30.0% | |
| TAACTTACCAATAGTTATGG+AGG | + | chr5.4:30106394-30106413 | MS.gene032887:intron | 30.0% | |
| TAAGGATAAAATTGGCTACT+AGG | - | chr5.4:30106608-30106627 | None:intergenic | 30.0% | |
| TACTTTCTGATCAAAGTAGT+TGG | - | chr5.4:30106028-30106047 | None:intergenic | 30.0% | |
| TTATCCTTAGAGACTTAACT+TGG | + | chr5.4:30106619-30106638 | MS.gene032887:intron | 30.0% | |
| TTCACCCACATGAAAAATTT+CGG | - | chr5.4:30106918-30106937 | None:intergenic | 30.0% | |
| TTGTATCTAACCACTCAAAT+TGG | + | chr5.4:30106474-30106493 | MS.gene032887:intron | 30.0% | |
| ! | AAAAATTTCGGCATCTTTTC+GGG | - | chr5.4:30106906-30106925 | None:intergenic | 30.0% |
| ! | CATTATCTTGGTAGTCAATT+TGG | + | chr5.4:30106256-30106275 | MS.gene032887:intron | 30.0% |
| ! | GAAAAATTTCGGCATCTTTT+CGG | - | chr5.4:30106907-30106926 | None:intergenic | 30.0% |
| ! | TGTTTTCACTATAGTCATGA+AGG | - | chr5.4:30106334-30106353 | None:intergenic | 30.0% |
| AACAAGTGAAGTTGTGTTGT+TGG | + | chr5.4:30105732-30105751 | MS.gene032887:CDS | 35.0% | |
| AACACCAAGTTAAGTCTCTA+AGG | - | chr5.4:30106626-30106645 | None:intergenic | 35.0% | |
| AAGACATGGAAGAGATACTT+GGG | + | chr5.4:30106733-30106752 | MS.gene032887:CDS | 35.0% | |
| AAGGTATACCCTTCACTTTA+AGG | - | chr5.4:30105798-30105817 | None:intergenic | 35.0% | |
| AGGTATACCCTTCACTTTAA+GGG | - | chr5.4:30105797-30105816 | None:intergenic | 35.0% | |
| CTTTATCCACTAAAGGAACA+AGG | + | chr5.4:30106506-30106525 | MS.gene032887:intron | 35.0% | |
| GTACAATCCTGTCCATAAAA+AGG | + | chr5.4:30105867-30105886 | MS.gene032887:CDS | 35.0% | |
| TTCCTTTGTGCACAAGAATT+GGG | - | chr5.4:30105894-30105913 | None:intergenic | 35.0% | |
| ! | ACAAGTGAAGTTGTGTTGTT+GGG | + | chr5.4:30105733-30105752 | MS.gene032887:CDS | 35.0% |
| ! | AGATGCCGAAATTTTTCATG+TGG | + | chr5.4:30106910-30106929 | MS.gene032887:CDS | 35.0% |
| ! | CAAGAATTGGGACCTTTTTA+TGG | - | chr5.4:30105882-30105901 | None:intergenic | 35.0% |
| ! | GACAGGATTGTACTTTAAGA+GGG | - | chr5.4:30105860-30105879 | None:intergenic | 35.0% |
| ! | GATGCCGAAATTTTTCATGT+GGG | + | chr5.4:30106911-30106930 | MS.gene032887:CDS | 35.0% |
| ! | TTCCTTTAGTGGATAAAGTG+AGG | - | chr5.4:30106504-30106523 | None:intergenic | 35.0% |
| !! | TTTAAGGGCTAGTTCTACTT+TGG | - | chr5.4:30105782-30105801 | None:intergenic | 35.0% |
| AAAGAAAGCTGCAGAAGACA+TGG | + | chr5.4:30106719-30106738 | MS.gene032887:CDS | 40.0% | |
| AACCTATTAGCTAGGTACGA+CGG | + | chr5.4:30106443-30106462 | MS.gene032887:intron | 40.0% | |
| ACTAAAGGAACAAGGTGGAT+AGG | + | chr5.4:30106514-30106533 | MS.gene032887:intron | 40.0% | |
| AGAACTAGCCCTTAAAGTGA+AGG | + | chr5.4:30105786-30105805 | MS.gene032887:CDS | 40.0% | |
| AGACATGGAAGAGATACTTG+GGG | + | chr5.4:30106734-30106753 | MS.gene032887:CDS | 40.0% | |
| CAAAGTAGTTGGCCCAAAAA+CGG | - | chr5.4:30106017-30106036 | None:intergenic | 40.0% | |
| CAATTCTTGTGCACAAAGGA+AGG | + | chr5.4:30105893-30105912 | MS.gene032887:CDS | 40.0% | |
| CTAAAGGAACAAGGTGGATA+GGG | + | chr5.4:30106515-30106534 | MS.gene032887:intron | 40.0% | |
| CTTCCTTTGTGCACAAGAAT+TGG | - | chr5.4:30105895-30105914 | None:intergenic | 40.0% | |
| GAACTAGCCCTTAAAGTGAA+GGG | + | chr5.4:30105787-30105806 | MS.gene032887:CDS | 40.0% | |
| GAAGACATGGAAGAGATACT+TGG | + | chr5.4:30106732-30106751 | MS.gene032887:CDS | 40.0% | |
| GGACAGGATTGTACTTTAAG+AGG | - | chr5.4:30105861-30105880 | None:intergenic | 40.0% | |
| GGGTATACCTTACAAGTATG+TGG | + | chr5.4:30105807-30105826 | MS.gene032887:CDS | 40.0% | |
| TATCCACCTTGTTCCTTTAG+TGG | - | chr5.4:30106515-30106534 | None:intergenic | 40.0% | |
| TATCCACTAAAGGAACAAGG+TGG | + | chr5.4:30106509-30106528 | MS.gene032887:intron | 40.0% | |
| TCTTCGTCCACATACTTGTA+AGG | - | chr5.4:30105817-30105836 | None:intergenic | 40.0% | |
| TGCCTCACTTTATCCACTAA+AGG | + | chr5.4:30106499-30106518 | MS.gene032887:intron | 40.0% | |
| ! | AAAGGGCTAAAGTCCGTTTT+TGG | + | chr5.4:30106001-30106020 | MS.gene032887:CDS | 40.0% |
| ! | AAGTTGTGTTGTTGGGAAAC+TGG | + | chr5.4:30105740-30105759 | MS.gene032887:CDS | 40.0% |
| ! | AGTTGTGTTGTTGGGAAACT+GGG | + | chr5.4:30105741-30105760 | MS.gene032887:CDS | 40.0% |
| ! | ATACTTGGGGTGTTTGAAGA+AGG | + | chr5.4:30106747-30106766 | MS.gene032887:CDS | 40.0% |
| ! | ATTGGGACCTTTTTATGGAC+AGG | - | chr5.4:30105877-30105896 | None:intergenic | 40.0% |
| ! | CACCTATGAAGCATTTCAAG+AGG | + | chr5.4:30106857-30106876 | MS.gene032887:CDS | 40.0% |
| ! | TACTTGGGGTGTTTGAAGAA+GGG | + | chr5.4:30106748-30106767 | MS.gene032887:CDS | 40.0% |
| !! | AAGGGCTAAAGTCCGTTTTT+GGG | + | chr5.4:30106002-30106021 | MS.gene032887:CDS | 40.0% |
| ACTTCCTCCTCATGACAAGT+TGG | + | chr5.4:30106971-30106990 | MS.gene032887:CDS | 45.0% | |
| AGCTAATAGGTTAAACCCGC+TGG | - | chr5.4:30106435-30106454 | None:intergenic | 45.0% | |
| ATCCGTCGTACCTAGCTAAT+AGG | - | chr5.4:30106448-30106467 | None:intergenic | 45.0% | |
| CGGACTTTAGCCCTTTGATA+AGG | - | chr5.4:30105997-30106016 | None:intergenic | 45.0% | |
| CTCCTCGAGATTGGAATATG+CGG | - | chr5.4:30106692-30106711 | None:intergenic | 45.0% | |
| GCCAGAGGATCCTTATCAAA+GGG | + | chr5.4:30105984-30106003 | MS.gene032887:CDS | 45.0% | |
| GCGGGTTTAACCTATTAGCT+AGG | + | chr5.4:30106435-30106454 | MS.gene032887:intron | 45.0% | |
| GCGTTTCGCCATTGAAGAAT+TGG | - | chr5.4:30106800-30106819 | None:intergenic | 45.0% | |
| GCTAATAGGTTAAACCCGCT+GGG | - | chr5.4:30106434-30106453 | None:intergenic | 45.0% | |
| GGCCTCTTGAAATGCTTCAT+AGG | - | chr5.4:30106862-30106881 | None:intergenic | 45.0% | |
| GGTGTTTGAAGAAGGGGTTA+AGG | + | chr5.4:30106755-30106774 | MS.gene032887:CDS | 45.0% | |
| GTCCCAATTCTTGTGCACAA+AGG | + | chr5.4:30105889-30105908 | MS.gene032887:CDS | 45.0% | |
| GTGAGGCAAACCAATTTGAG+TGG | - | chr5.4:30106487-30106506 | None:intergenic | 45.0% | |
| TACCGCATATTCCAATCTCG+AGG | + | chr5.4:30106687-30106706 | MS.gene032887:CDS | 45.0% | |
| TGCCAGAGGATCCTTATCAA+AGG | + | chr5.4:30105983-30106002 | MS.gene032887:CDS | 45.0% | |
| TGGAATATGCGGTAGCTACT+AGG | - | chr5.4:30106681-30106700 | None:intergenic | 45.0% | |
| TTCATAGGTGCAAGAAGTCG+CGG | - | chr5.4:30106847-30106866 | None:intergenic | 45.0% | |
| TTCTCTCTTCTCCTCGAGAT+TGG | - | chr5.4:30106701-30106720 | None:intergenic | 45.0% | |
| TTCTTCAATGGCGAAACGCT+AGG | + | chr5.4:30106801-30106820 | MS.gene032887:CDS | 45.0% | |
| ! | ACTTGGGGTGTTTGAAGAAG+GGG | + | chr5.4:30106749-30106768 | MS.gene032887:CDS | 45.0% |
| ! | GTAAAATAGGTTGAGCCCAG+CGG | + | chr5.4:30106416-30106435 | MS.gene032887:intron | 45.0% |
| ! | TAAAATAGGTTGAGCCCAGC+GGG | + | chr5.4:30106417-30106436 | MS.gene032887:intron | 45.0% |
| !! | TAGCTAGGTACGACGGATTA+AGG | + | chr5.4:30106450-30106469 | MS.gene032887:intron | 45.0% |
| !!! | AATATAATTTGTTTTTTTTA+AGG | + | chr5.4:30106138-30106157 | MS.gene032887:intron | 5.0% |
| !!! | ATATAATTTGTTTTTTTTAA+GGG | + | chr5.4:30106139-30106158 | MS.gene032887:intron | 5.0% |
| AGGAACAAGGTGGATAGGGT+TGG | + | chr5.4:30106519-30106538 | MS.gene032887:intron | 50.0% | |
| AGGATCCTCTGGCAAGAGTT+TGG | - | chr5.4:30105977-30105996 | None:intergenic | 50.0% | |
| CACCAGAGGATGTTCCTTCA+GGG | - | chr5.4:30106943-30106962 | None:intergenic | 50.0% | |
| CGTGAAGACCTCTACATCAC+AGG | - | chr5.4:30106883-30106902 | None:intergenic | 50.0% | |
| GAAGGAACATCCTCTGGTGA+AGG | + | chr5.4:30106944-30106963 | MS.gene032887:CDS | 50.0% | |
| GCCCTTTGATAAGGATCCTC+TGG | - | chr5.4:30105988-30106007 | None:intergenic | 50.0% | |
| GGATCCTCTGGCAAGAGTTT+GGG | - | chr5.4:30105976-30105995 | None:intergenic | 50.0% | |
| TAGTCCCAAACTCTTGCCAG+AGG | + | chr5.4:30105969-30105988 | MS.gene032887:CDS | 50.0% | |
| TCAAGAGGCCTGTGATGTAG+AGG | + | chr5.4:30106872-30106891 | MS.gene032887:CDS | 50.0% | |
| TCACCAGAGGATGTTCCTTC+AGG | - | chr5.4:30106944-30106963 | None:intergenic | 50.0% | |
| TTGGCCACCAACTTGTCATG+AGG | - | chr5.4:30106981-30107000 | None:intergenic | 50.0% | |
| ! | TCCTCCTCATGACAAGTTGG+TGG | + | chr5.4:30106974-30106993 | MS.gene032887:CDS | 50.0% |
| !! | GGAAGTGTTTCCTTCACCAG+AGG | - | chr5.4:30106957-30106976 | None:intergenic | 50.0% |
| CATGTGGGTGAATGCCCTGA+AGG | + | chr5.4:30106926-30106945 | MS.gene032887:CDS | 55.0% | |
| GCCACCAACTTGTCATGAGG+AGG | - | chr5.4:30106978-30106997 | None:intergenic | 55.0% | |
| GCTAGGACTCCTCGACATTG+TGG | + | chr5.4:30106818-30106837 | MS.gene032887:CDS | 55.0% | |
| TGCCCTGAAGGAACATCCTC+TGG | + | chr5.4:30106938-30106957 | MS.gene032887:CDS | 55.0% | |
| !! | GGTGGATAGGGTTGGCTCAT+CGG | + | chr5.4:30106527-30106546 | MS.gene032887:intron | 55.0% |
| !! | GTGGATAGGGTTGGCTCATC+GGG | + | chr5.4:30106528-30106547 | MS.gene032887:intron | 55.0% |
| TCGCGGCTACCACAATGTCG+AGG | - | chr5.4:30106830-30106849 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.4 | gene | 30105721 | 30107025 | 30105721 | ID=MS.gene032887 |
| chr5.4 | mRNA | 30105721 | 30107025 | 30105721 | ID=MS.gene032887.t1;Parent=MS.gene032887 |
| chr5.4 | exon | 30105721 | 30106044 | 30105721 | ID=MS.gene032887.t1.exon1;Parent=MS.gene032887.t1 |
| chr5.4 | CDS | 30105721 | 30106044 | 30105721 | ID=cds.MS.gene032887.t1;Parent=MS.gene032887.t1 |
| chr5.4 | exon | 30106672 | 30107025 | 30106672 | ID=MS.gene032887.t1.exon2;Parent=MS.gene032887.t1 |
| chr5.4 | CDS | 30106672 | 30107025 | 30106672 | ID=cds.MS.gene032887.t1;Parent=MS.gene032887.t1 |
| Gene Sequence |
| Protein sequence |
