Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene032888.t1 | XP_003613754.1 | 78.5 | 223 | 37 | 1 | 1 | 212 | 1 | 223 | 5.40E-93 | 350.5 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene032888.t1 | Q9FUT0 | 41.7 | 228 | 112 | 4 | 1 | 210 | 1 | 225 | 8.0e-45 | 181.8 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene032888.t1 | G7KDY4 | 78.5 | 223 | 37 | 1 | 1 | 212 | 1 | 223 | 3.9e-93 | 350.5 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene070564 | MS.gene032888 | PPI |
| MS.gene042063 | MS.gene032888 | PPI |
| MS.gene95067 | MS.gene032888 | PPI |
| MS.gene55353 | MS.gene032888 | PPI |
| MS.gene77425 | MS.gene032888 | PPI |
| MS.gene95066 | MS.gene032888 | PPI |
| MS.gene042064 | MS.gene032888 | PPI |
| MS.gene032887 | MS.gene032888 | PPI |
| MS.gene43462 | MS.gene032888 | PPI |
| MS.gene78610 | MS.gene032888 | PPI |
| MS.gene032888 | MS.gene77424 | PPI |
| MS.gene012776 | MS.gene032888 | PPI |
| MS.gene012777 | MS.gene032888 | PPI |
| MS.gene85927 | MS.gene032888 | PPI |
| MS.gene032888 | MS.gene53154 | PPI |
| MS.gene032888 | MS.gene070564 | PPI |
| MS.gene43463 | MS.gene032888 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene032888.t1 | MTR_5g040430 | 78.475 | 223 | 37 | 1 | 1 | 212 | 1 | 223 | 2.63e-124 | 350 |
| MS.gene032888.t1 | MTR_4g019780 | 45.581 | 215 | 100 | 3 | 7 | 210 | 8 | 216 | 2.99e-56 | 178 |
| MS.gene032888.t1 | MTR_4g019790 | 38.739 | 222 | 117 | 4 | 1 | 210 | 1 | 215 | 2.61e-50 | 163 |
| MS.gene032888.t1 | MTR_4g059730 | 39.269 | 219 | 118 | 4 | 5 | 212 | 2 | 216 | 6.16e-48 | 157 |
| MS.gene032888.t1 | MTR_7g065590 | 38.889 | 216 | 113 | 3 | 7 | 210 | 7 | 215 | 1.90e-47 | 155 |
| MS.gene032888.t1 | MTR_7g065600 | 38.288 | 222 | 118 | 3 | 1 | 210 | 1 | 215 | 2.27e-46 | 153 |
| MS.gene032888.t1 | MTR_7g065660 | 37.557 | 221 | 119 | 4 | 1 | 209 | 1 | 214 | 5.09e-46 | 152 |
| MS.gene032888.t1 | MTR_7g065750 | 39.013 | 223 | 116 | 5 | 1 | 210 | 1 | 216 | 1.09e-45 | 151 |
| MS.gene032888.t1 | MTR_1g090060 | 38.532 | 218 | 119 | 4 | 6 | 212 | 2 | 215 | 1.90e-45 | 150 |
| MS.gene032888.t1 | MTR_7g065230 | 39.732 | 224 | 111 | 5 | 1 | 212 | 1 | 212 | 5.69e-45 | 149 |
| MS.gene032888.t1 | MTR_1g090070 | 36.199 | 221 | 125 | 4 | 4 | 212 | 6 | 222 | 2.04e-44 | 148 |
| MS.gene032888.t1 | MTR_7g065290 | 37.838 | 222 | 119 | 3 | 1 | 210 | 1 | 215 | 3.78e-44 | 147 |
| MS.gene032888.t1 | MTR_3g099757 | 38.785 | 214 | 114 | 3 | 8 | 210 | 6 | 213 | 9.62e-44 | 146 |
| MS.gene032888.t1 | MTR_7g065720 | 36.771 | 223 | 121 | 4 | 1 | 210 | 1 | 216 | 1.52e-43 | 145 |
| MS.gene032888.t1 | MTR_7g065265 | 36.697 | 218 | 119 | 4 | 1 | 206 | 1 | 211 | 2.06e-42 | 142 |
| MS.gene032888.t1 | MTR_7g065740 | 35.874 | 223 | 123 | 5 | 1 | 210 | 1 | 216 | 2.30e-42 | 142 |
| MS.gene032888.t1 | MTR_7g065630 | 36.937 | 222 | 117 | 4 | 1 | 210 | 19 | 229 | 3.00e-42 | 142 |
| MS.gene032888.t1 | MTR_7g065270 | 36.239 | 218 | 120 | 4 | 1 | 206 | 1 | 211 | 8.90e-41 | 138 |
| MS.gene032888.t1 | MTR_1g090100 | 36.111 | 216 | 123 | 4 | 8 | 212 | 3 | 214 | 4.27e-40 | 137 |
| MS.gene032888.t1 | MTR_6g080440 | 37.915 | 211 | 114 | 3 | 6 | 205 | 2 | 206 | 4.71e-40 | 137 |
| MS.gene032888.t1 | MTR_1g090090 | 37.736 | 212 | 117 | 4 | 6 | 206 | 2 | 209 | 5.72e-40 | 136 |
| MS.gene032888.t1 | MTR_8g087425 | 35.023 | 217 | 124 | 3 | 5 | 210 | 3 | 213 | 9.23e-40 | 136 |
| MS.gene032888.t1 | MTR_2g070150 | 34.762 | 210 | 119 | 3 | 5 | 203 | 2 | 204 | 2.12e-39 | 134 |
| MS.gene032888.t1 | MTR_7g065260 | 36.792 | 212 | 117 | 3 | 1 | 201 | 8 | 213 | 2.23e-39 | 135 |
| MS.gene032888.t1 | MTR_8g087410 | 37.264 | 212 | 116 | 3 | 5 | 205 | 4 | 209 | 5.15e-39 | 134 |
| MS.gene032888.t1 | MTR_1g090150 | 35.681 | 213 | 123 | 4 | 7 | 209 | 3 | 211 | 1.14e-38 | 133 |
| MS.gene032888.t1 | MTR_2g070200 | 36.493 | 211 | 111 | 5 | 5 | 201 | 2 | 203 | 2.28e-38 | 132 |
| MS.gene032888.t1 | MTR_1g115195 | 35.023 | 217 | 123 | 5 | 6 | 209 | 2 | 213 | 3.35e-38 | 132 |
| MS.gene032888.t1 | MTR_7g065640 | 35.586 | 222 | 106 | 5 | 1 | 210 | 1 | 197 | 4.48e-38 | 131 |
| MS.gene032888.t1 | MTR_2g070060 | 33.945 | 218 | 126 | 3 | 5 | 211 | 2 | 212 | 1.27e-37 | 130 |
| MS.gene032888.t1 | MTR_2g070180 | 33.175 | 211 | 123 | 3 | 5 | 204 | 2 | 205 | 2.89e-37 | 129 |
| MS.gene032888.t1 | MTR_2g070130 | 34.597 | 211 | 120 | 4 | 5 | 204 | 2 | 205 | 3.29e-37 | 129 |
| MS.gene032888.t1 | MTR_7g065710 | 34.135 | 208 | 114 | 4 | 8 | 203 | 5 | 201 | 8.29e-35 | 123 |
| MS.gene032888.t1 | MTR_2g070120 | 35.377 | 212 | 117 | 5 | 5 | 204 | 2 | 205 | 8.79e-35 | 123 |
| MS.gene032888.t1 | MTR_2g070210 | 35.185 | 216 | 114 | 6 | 5 | 204 | 2 | 207 | 1.16e-34 | 122 |
| MS.gene032888.t1 | MTR_7g065680 | 36.574 | 216 | 114 | 4 | 7 | 210 | 7 | 211 | 3.28e-34 | 121 |
| MS.gene032888.t1 | MTR_2g070110 | 34.762 | 210 | 120 | 6 | 5 | 204 | 2 | 204 | 5.78e-34 | 120 |
| MS.gene032888.t1 | MTR_2g070140 | 33.846 | 195 | 111 | 3 | 21 | 204 | 2 | 189 | 1.53e-33 | 119 |
| MS.gene032888.t1 | MTR_7g065700 | 37.073 | 205 | 106 | 5 | 7 | 199 | 7 | 200 | 2.26e-33 | 119 |
| MS.gene032888.t1 | MTR_2g070070 | 34.579 | 214 | 116 | 6 | 5 | 204 | 2 | 205 | 1.85e-32 | 117 |
| MS.gene032888.t1 | MTR_5g037380 | 34.234 | 222 | 117 | 7 | 5 | 205 | 3 | 216 | 2.08e-32 | 117 |
| MS.gene032888.t1 | MTR_8g061950 | 32.727 | 220 | 133 | 4 | 6 | 211 | 4 | 222 | 9.94e-32 | 115 |
| MS.gene032888.t1 | MTR_8g056940 | 34.000 | 200 | 124 | 2 | 5 | 198 | 2 | 199 | 1.23e-31 | 115 |
| MS.gene032888.t1 | MTR_5g076900 | 32.381 | 210 | 122 | 5 | 7 | 204 | 6 | 207 | 2.56e-31 | 114 |
| MS.gene032888.t1 | MTR_3g467420 | 33.649 | 211 | 115 | 7 | 6 | 201 | 8 | 208 | 2.26e-30 | 112 |
| MS.gene032888.t1 | MTR_3g467430 | 31.455 | 213 | 125 | 5 | 1 | 201 | 5 | 208 | 2.33e-30 | 112 |
| MS.gene032888.t1 | MTR_0186s0030 | 53.763 | 93 | 43 | 0 | 5 | 97 | 2 | 94 | 7.09e-30 | 108 |
| MS.gene032888.t1 | MTR_4g124130 | 54.839 | 93 | 41 | 1 | 6 | 97 | 3 | 95 | 2.45e-27 | 103 |
| MS.gene032888.t1 | MTR_2g072120 | 51.064 | 47 | 23 | 0 | 51 | 97 | 2 | 48 | 9.63e-15 | 67.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene032888.t1 | AT5G62480 | 42.105 | 228 | 111 | 5 | 1 | 210 | 1 | 225 | 1.38e-56 | 179 |
| MS.gene032888.t1 | AT1G74590 | 39.631 | 217 | 119 | 2 | 1 | 206 | 1 | 216 | 2.08e-55 | 176 |
| MS.gene032888.t1 | AT3G09270 | 38.839 | 224 | 119 | 4 | 1 | 212 | 1 | 218 | 2.55e-47 | 155 |
| MS.gene032888.t1 | AT2G29450 | 40.553 | 217 | 106 | 5 | 4 | 205 | 3 | 211 | 1.70e-46 | 153 |
| MS.gene032888.t1 | AT2G29440 | 38.565 | 223 | 113 | 6 | 4 | 211 | 3 | 216 | 3.27e-45 | 150 |
| MS.gene032888.t1 | AT2G29460 | 34.821 | 224 | 128 | 4 | 1 | 212 | 1 | 218 | 2.80e-44 | 147 |
| MS.gene032888.t1 | AT2G29490 | 35.426 | 223 | 126 | 4 | 1 | 211 | 1 | 217 | 1.74e-43 | 145 |
| MS.gene032888.t1 | AT2G29480 | 35.268 | 224 | 127 | 4 | 1 | 212 | 1 | 218 | 3.03e-42 | 142 |
| MS.gene032888.t1 | AT2G29420 | 35.407 | 209 | 118 | 3 | 5 | 202 | 7 | 209 | 1.50e-41 | 140 |
| MS.gene032888.t1 | AT5G62480 | 35.526 | 228 | 100 | 5 | 1 | 210 | 1 | 199 | 1.76e-39 | 135 |
| MS.gene032888.t1 | AT5G62480 | 35.088 | 228 | 100 | 5 | 1 | 210 | 1 | 198 | 9.03e-39 | 133 |
| MS.gene032888.t1 | AT2G29470 | 37.333 | 225 | 122 | 7 | 1 | 212 | 1 | 219 | 1.90e-38 | 132 |
| MS.gene032888.t1 | AT1G78380 | 33.019 | 212 | 124 | 3 | 5 | 205 | 2 | 206 | 1.17e-36 | 128 |
| MS.gene032888.t1 | AT1G78320 | 35.185 | 216 | 119 | 5 | 7 | 211 | 4 | 209 | 7.49e-36 | 125 |
| MS.gene032888.t1 | AT1G17180 | 34.906 | 212 | 120 | 3 | 5 | 205 | 2 | 206 | 1.04e-35 | 125 |
| MS.gene032888.t1 | AT1G10370 | 34.842 | 221 | 130 | 4 | 5 | 212 | 3 | 222 | 2.19e-35 | 125 |
| MS.gene032888.t1 | AT1G10360 | 35.047 | 214 | 125 | 4 | 5 | 205 | 3 | 215 | 9.94e-35 | 123 |
| MS.gene032888.t1 | AT1G78340 | 35.196 | 179 | 100 | 2 | 5 | 172 | 2 | 175 | 1.65e-34 | 122 |
| MS.gene032888.t1 | AT1G69930 | 34.259 | 216 | 127 | 4 | 8 | 209 | 13 | 227 | 3.21e-34 | 122 |
| MS.gene032888.t1 | AT1G17170 | 33.962 | 212 | 121 | 4 | 5 | 205 | 2 | 205 | 1.89e-33 | 119 |
| MS.gene032888.t1 | AT1G78370 | 29.665 | 209 | 129 | 3 | 9 | 206 | 6 | 207 | 3.58e-33 | 119 |
| MS.gene032888.t1 | AT1G27130 | 31.797 | 217 | 133 | 4 | 4 | 206 | 3 | 218 | 3.84e-33 | 119 |
| MS.gene032888.t1 | AT1G59670 | 35.616 | 219 | 125 | 6 | 4 | 208 | 3 | 219 | 1.15e-32 | 118 |
| MS.gene032888.t1 | AT1G53680 | 34.211 | 228 | 127 | 5 | 1 | 212 | 1 | 221 | 1.22e-31 | 115 |
| MS.gene032888.t1 | AT1G59700 | 37.104 | 221 | 126 | 5 | 4 | 211 | 3 | 223 | 1.32e-31 | 115 |
| MS.gene032888.t1 | AT3G43800 | 32.159 | 227 | 130 | 7 | 1 | 212 | 1 | 218 | 1.31e-30 | 112 |
| MS.gene032888.t1 | AT1G78360 | 31.776 | 214 | 127 | 4 | 5 | 206 | 2 | 208 | 7.10e-30 | 110 |
| MS.gene032888.t1 | AT1G17190 | 30.660 | 212 | 129 | 3 | 5 | 205 | 3 | 207 | 1.17e-29 | 110 |
| MS.gene032888.t1 | AT1G69920 | 30.189 | 212 | 133 | 4 | 2 | 199 | 29 | 239 | 7.88e-29 | 108 |
| MS.gene032888.t1 | AT1G27140 | 32.719 | 217 | 118 | 5 | 4 | 199 | 3 | 212 | 8.41e-29 | 108 |
| MS.gene032888.t1 | AT1G78320 | 29.630 | 216 | 104 | 6 | 7 | 211 | 4 | 182 | 1.56e-20 | 85.5 |
Find 55 sgRNAs with CRISPR-Local
Find 168 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTTAAGGGCTAGTTCTATTT+TGG | 0.203611 | 5.4:-30112997 | None:intergenic |
| TTGAATACATCGATGAGATT+TGG | 0.246469 | 5.4:+30113159 | MS.gene032888:CDS |
| CTTCCTTTGTGCAAGAGAAT+TGG | 0.277475 | 5.4:-30113110 | None:intergenic |
| AAGGTATGCCCTTCAGTTTA+AGG | 0.285977 | 5.4:-30113013 | None:intergenic |
| AAGTTGTGTTGTTGGGATAC+TGG | 0.319134 | 5.4:+30112958 | MS.gene032888:CDS |
| TCACCAGTAGATGTTCCTTC+AGG | 0.322164 | 5.4:-30114815 | None:intergenic |
| ACTTCCTCCTCATGACAAAT+TGG | 0.323192 | 5.4:+30114845 | MS.gene032888:CDS |
| TGAATACATCGATGAGATTT+GGG | 0.346681 | 5.4:+30113160 | MS.gene032888:CDS |
| GTGTTTCGCCGTTGAAGAAT+TGG | 0.357431 | 5.4:-30114671 | None:intergenic |
| TTCCTTTGTGCAAGAGAATT+GGG | 0.371798 | 5.4:-30113109 | None:intergenic |
| AGGATCCTCTGGCAACAGTT+TGG | 0.380589 | 5.4:-30113192 | None:intergenic |
| GGATCCTCTGGCAACAGTTT+GGG | 0.396541 | 5.4:-30113191 | None:intergenic |
| TTGAAAATGCGATAGGTACT+AGG | 0.416294 | 5.4:-30114552 | None:intergenic |
| AGGTATGCCCTTCAGTTTAA+GGG | 0.425909 | 5.4:-30113012 | None:intergenic |
| AGTTGTGTTGTTGGGATACT+GGG | 0.457322 | 5.4:+30112959 | MS.gene032888:CDS |
| GCCCTTTGATAAGGATCCTC+TGG | 0.462325 | 5.4:-30113203 | None:intergenic |
| GAAGAAAGAACGAAAGCTAT+AGG | 0.471887 | 5.4:+30114585 | MS.gene032888:CDS |
| ATACTTGGGGTGTTTGAAGA+AGG | 0.473234 | 5.4:+30114621 | MS.gene032888:CDS |
| CGAACTCTAGCCCTTTGATA+AGG | 0.473508 | 5.4:-30113212 | None:intergenic |
| CACCAGTAGATGTTCCTTCA+GGG | 0.479309 | 5.4:-30114814 | None:intergenic |
| TCACTAGTTTCCTCATCCAT+TGG | 0.481224 | 5.4:-30112936 | None:intergenic |
| TCTTCCTCCACATACTTGTA+AGG | 0.488405 | 5.4:-30113032 | None:intergenic |
| AACTAGTGAAGTTGTGTTGT+TGG | 0.493019 | 5.4:+30112950 | MS.gene032888:CDS |
| TGCCCTGAAGGAACATCTAC+TGG | 0.496298 | 5.4:+30114812 | MS.gene032888:CDS |
| TTTGAAGAAGGGGTCAAGGA+AGG | 0.500006 | 5.4:+30114633 | MS.gene032888:CDS |
| ACTAGTGAAGTTGTGTTGTT+GGG | 0.505894 | 5.4:+30112951 | MS.gene032888:CDS |
| GGTGAAGATCTCTATGTGTA+AGG | 0.513987 | 5.4:-30114754 | None:intergenic |
| ACCACAATGTCAAGGAGTCC+TGG | 0.519758 | 5.4:-30114693 | None:intergenic |
| GGAGACGTGGAAGACATACT+TGG | 0.522869 | 5.4:+30114606 | MS.gene032888:CDS |
| GGTGTTTGAAGAAGGGGTCA+AGG | 0.531277 | 5.4:+30114629 | MS.gene032888:CDS |
| GCCAGAGGATCCTTATCAAA+GGG | 0.533785 | 5.4:+30113202 | MS.gene032888:CDS |
| TACTTGGGGTGTTTGAAGAA+GGG | 0.536003 | 5.4:+30114622 | MS.gene032888:CDS |
| TTCTTCAACGGCGAAACACC+AGG | 0.546665 | 5.4:+30114675 | MS.gene032888:CDS |
| CGCCTTTGAAGCATTTCATG+AGG | 0.555517 | 5.4:+30114731 | MS.gene032888:CDS |
| GGGCATACCTTACAAGTATG+TGG | 0.561593 | 5.4:+30113025 | MS.gene032888:CDS |
| GAGACGTGGAAGACATACTT+GGG | 0.563262 | 5.4:+30114607 | MS.gene032888:CDS |
| AGAACTAGCCCTTAAACTGA+AGG | 0.563951 | 5.4:+30113004 | MS.gene032888:CDS |
| TTCATCATAACCAATGGATG+AGG | 0.566045 | 5.4:+30112926 | None:intergenic |
| ACTTGGGGTGTTTGAAGAAG+GGG | 0.568438 | 5.4:+30114623 | MS.gene032888:CDS |
| GAAGGAACATCTACTGGTGA+AGG | 0.571924 | 5.4:+30114818 | MS.gene032888:CDS |
| TCCTCCTCATGACAAATTGG+TGG | 0.572868 | 5.4:+30114848 | MS.gene032888:CDS |
| GCCACCAATTTGTCATGAGG+AGG | 0.575692 | 5.4:-30114849 | None:intergenic |
| GGCCTCATGAAATGCTTCAA+AGG | 0.582172 | 5.4:-30114733 | None:intergenic |
| TGCCAGAGGATCCTTATCAA+AGG | 0.585447 | 5.4:+30113201 | MS.gene032888:CDS |
| TTGGCCACCAATTTGTCATG+AGG | 0.586013 | 5.4:-30114852 | None:intergenic |
| GAACTAGCCCTTAAACTGAA+GGG | 0.588107 | 5.4:+30113005 | MS.gene032888:CDS |
| ACCAGGACTCCTTGACATTG+TGG | 0.589042 | 5.4:+30114692 | MS.gene032888:CDS |
| GAGCAATTCCAATTCTTCAA+CGG | 0.594334 | 5.4:+30114663 | MS.gene032888:CDS |
| CATGTGGGTGAATGCCCTGA+AGG | 0.604982 | 5.4:+30114800 | MS.gene032888:CDS |
| CTCCCAATTCTCTTGCACAA+AGG | 0.623171 | 5.4:+30113107 | MS.gene032888:CDS |
| AACGAAAGCTATAGGAGACG+TGG | 0.647606 | 5.4:+30114593 | MS.gene032888:CDS |
| TCGCAGCTACCACAATGTCA+AGG | 0.665866 | 5.4:-30114701 | None:intergenic |
| TAGTCCCAAACTGTTGCCAG+AGG | 0.679003 | 5.4:+30113187 | MS.gene032888:CDS |
| CATACCTTACAAGTATGTGG+AGG | 0.730124 | 5.4:+30113028 | MS.gene032888:CDS |
| AGACGTGGAAGACATACTTG+GGG | 0.775678 | 5.4:+30114608 | MS.gene032888:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AAAAATAAAACGTATTTTTA+TGG | + | chr5.4:30113901-30113920 | MS.gene032888:intron | 10.0% |
| !!! | AAAATAAAACGTATTTTTAT+GGG | + | chr5.4:30113902-30113921 | MS.gene032888:intron | 10.0% |
| !!! | TTTTTTTTCTTTTTAGTTAT+TGG | + | chr5.4:30113554-30113573 | MS.gene032888:intron | 10.0% |
| !! | TATCAAAATTGTAAAAACAT+TGG | + | chr5.4:30113425-30113444 | MS.gene032888:intron | 15.0% |
| !! | TTATTTCGTTTCTATTTAGA+CGG | + | chr5.4:30113503-30113522 | MS.gene032888:intron | 20.0% |
| !! | TTTACAAAAGAGATATCAAT+GGG | - | chr5.4:30114189-30114208 | None:intergenic | 20.0% |
| !! | TTTACTCAATAACAAAGAAT+AGG | - | chr5.4:30113354-30113373 | None:intergenic | 20.0% |
| ! | ATTTACCATATTGAATGTGA+AGG | + | chr5.4:30113380-30113399 | MS.gene032888:intron | 25.0% |
| ! | CTTTACAAAAGAGATATCAA+TGG | - | chr5.4:30114190-30114209 | None:intergenic | 25.0% |
| ! | GTTTGTATAGAGTTTATTCT+TGG | + | chr5.4:30114044-30114063 | MS.gene032888:intron | 25.0% |
| ! | TTTACCATATTGAATGTGAA+GGG | + | chr5.4:30113381-30113400 | MS.gene032888:intron | 25.0% |
| ! | TTTATGTTGTTACGACAATT+CGG | - | chr5.4:30113884-30113903 | None:intergenic | 25.0% |
| !! | AAATTTGTTTATACCCAGTT+TGG | - | chr5.4:30114274-30114293 | None:intergenic | 25.0% |
| !!! | AGATTTGTTGCAATTTTATG+AGG | + | chr5.4:30113926-30113945 | MS.gene032888:intron | 25.0% |
| !!! | GATTTGTTGCAATTTTATGA+GGG | + | chr5.4:30113927-30113946 | MS.gene032888:intron | 25.0% |
| !!! | TAACTTCCATACACTTTTTT+TGG | + | chr5.4:30114348-30114367 | MS.gene032888:intron | 25.0% |
| !!! | TTACAATATGCTTTTGAGTT+TGG | - | chr5.4:30114874-30114893 | None:intergenic | 25.0% |
| !!! | TTCTTTTTAGTTATTGGCAA+AGG | + | chr5.4:30113560-30113579 | MS.gene032888:intron | 25.0% |
| !!! | TTTTGATTCGACATTTTTCT+GGG | + | chr5.4:30113836-30113855 | MS.gene032888:intron | 25.0% |
| AAAGTTACTCATCATTACAG+TGG | + | chr5.4:30114206-30114225 | MS.gene032888:intron | 30.0% | |
| AATCAAAAGTCTCCAAAAAC+AGG | - | chr5.4:30113824-30113843 | None:intergenic | 30.0% | |
| ACCAATAAATACTTGATGTG+TGG | - | chr5.4:30114394-30114413 | None:intergenic | 30.0% | |
| ACTTTCGCAACAAAAACAAT+AGG | - | chr5.4:30113721-30113740 | None:intergenic | 30.0% | |
| AGATGTAAATCTTGAGATAG+AGG | + | chr5.4:30113981-30114000 | MS.gene032888:intron | 30.0% | |
| AGTAGTCAACACAAAAACTA+GGG | + | chr5.4:30114022-30114041 | MS.gene032888:intron | 30.0% | |
| ATGTAAATCTTGAGATAGAG+GGG | + | chr5.4:30113983-30114002 | MS.gene032888:intron | 30.0% | |
| CAAGATTTACATCTGATACA+AGG | - | chr5.4:30113975-30113994 | None:intergenic | 30.0% | |
| GATGTAAATCTTGAGATAGA+GGG | + | chr5.4:30113982-30114001 | MS.gene032888:intron | 30.0% | |
| TACTTTCTCATCAAAGTAGT+TGG | - | chr5.4:30113246-30113265 | None:intergenic | 30.0% | |
| TAGTAGTCAACACAAAAACT+AGG | + | chr5.4:30114021-30114040 | MS.gene032888:intron | 30.0% | |
| TCCACACATCAAGTATTTAT+TGG | + | chr5.4:30114390-30114409 | MS.gene032888:intron | 30.0% | |
| TGAATACATCGATGAGATTT+GGG | + | chr5.4:30113160-30113179 | MS.gene032888:CDS | 30.0% | |
| TTATGTTGTTACGACAATTC+GGG | - | chr5.4:30113883-30113902 | None:intergenic | 30.0% | |
| TTCACCCACATGAAAAATTT+CGG | - | chr5.4:30114792-30114811 | None:intergenic | 30.0% | |
| TTGAATACATCGATGAGATT+TGG | + | chr5.4:30113159-30113178 | MS.gene032888:CDS | 30.0% | |
| TTTGCTGAATCTGTCAAAAT+CGG | + | chr5.4:30113764-30113783 | MS.gene032888:intron | 30.0% | |
| ! | AAGCAACCAAAAAAAGTGTA+TGG | - | chr5.4:30114357-30114376 | None:intergenic | 30.0% |
| ! | ATCGCATTTTCAAAACACAA+GGG | + | chr5.4:30114562-30114581 | MS.gene032888:CDS | 30.0% |
| ! | TATCGCATTTTCAAAACACA+AGG | + | chr5.4:30114561-30114580 | MS.gene032888:CDS | 30.0% |
| !! | CTTTTGATTCGACATTTTTC+TGG | + | chr5.4:30113835-30113854 | MS.gene032888:intron | 30.0% |
| !!! | TTCAACCCACCTATTTTAAT+TGG | + | chr5.4:30113615-30113634 | MS.gene032888:intron | 30.0% |
| !!! | TTGTGTTTTGAAAATGCGAT+AGG | - | chr5.4:30114562-30114581 | None:intergenic | 30.0% |
| !!! | TTTAAGGGCTAGTTCTATTT+TGG | - | chr5.4:30113000-30113019 | None:intergenic | 30.0% |
| AAATCCCTACAATGAAGAGA+AGG | + | chr5.4:30113464-30113483 | MS.gene032888:intron | 35.0% | |
| AACTAGTGAAGTTGTGTTGT+TGG | + | chr5.4:30112950-30112969 | MS.gene032888:CDS | 35.0% | |
| AACTTGTCTCAACACAAGTT+GGG | - | chr5.4:30113645-30113664 | None:intergenic | 35.0% | |
| AATCCTAATAGTGTTTCCCA+AGG | - | chr5.4:30114099-30114118 | None:intergenic | 35.0% | |
| ACAACCCTTCACATTCAATA+TGG | - | chr5.4:30113388-30113407 | None:intergenic | 35.0% | |
| ACTATTAGGATTGAGTCTCT+TGG | + | chr5.4:30114107-30114126 | MS.gene032888:intron | 35.0% | |
| AGGTATAGATGTGACAAAAC+AGG | - | chr5.4:30113701-30113720 | None:intergenic | 35.0% | |
| ATTCTTGGCAACAAACACTA+GGG | + | chr5.4:30114059-30114078 | MS.gene032888:intron | 35.0% | |
| CTCCAAAAACAGGCAAAATT+CGG | - | chr5.4:30113814-30113833 | None:intergenic | 35.0% | |
| GAAGAAAGAACGAAAGCTAT+AGG | + | chr5.4:30114585-30114604 | MS.gene032888:CDS | 35.0% | |
| GAGCAATTCCAATTCTTCAA+CGG | + | chr5.4:30114663-30114682 | MS.gene032888:CDS | 35.0% | |
| GTTCAAAATTGACCTAGTCT+GGG | - | chr5.4:30114252-30114271 | None:intergenic | 35.0% | |
| TACTCATCATTACAGTGGAA+CGG | + | chr5.4:30114211-30114230 | MS.gene032888:intron | 35.0% | |
| TATGCCTTCTCTTCATTGTA+GGG | - | chr5.4:30113471-30113490 | None:intergenic | 35.0% | |
| TATTCTTGGCAACAAACACT+AGG | + | chr5.4:30114058-30114077 | MS.gene032888:intron | 35.0% | |
| TCCAAAAACAGGCAAAATTC+GGG | - | chr5.4:30113813-30113832 | None:intergenic | 35.0% | |
| TTATGCCTTCTCTTCATTGT+AGG | - | chr5.4:30113472-30113491 | None:intergenic | 35.0% | |
| TTCAAAATTGACCTAGTCTG+GGG | - | chr5.4:30114251-30114270 | None:intergenic | 35.0% | |
| TTCCTTTGTGCAAGAGAATT+GGG | - | chr5.4:30113112-30113131 | None:intergenic | 35.0% | |
| TTCTCTTCATTGTAGGGATT+TGG | - | chr5.4:30113465-30113484 | None:intergenic | 35.0% | |
| TTGAAAATGCGATAGGTACT+AGG | - | chr5.4:30114555-30114574 | None:intergenic | 35.0% | |
| TTGCTGAATCTGTCAAAATC+GGG | + | chr5.4:30113765-30113784 | MS.gene032888:intron | 35.0% | |
| ! | ACTAGTGAAGTTGTGTTGTT+GGG | + | chr5.4:30112951-30112970 | MS.gene032888:CDS | 35.0% |
| ! | AGGTCAATTTTGAACCAAAC+TGG | + | chr5.4:30114257-30114276 | MS.gene032888:intron | 35.0% |
| ! | ATTGGGAGCTTTTTATGAAC+AGG | - | chr5.4:30113095-30113114 | None:intergenic | 35.0% |
| ! | GAAAAATTTCGGCGTCTTTT+CGG | - | chr5.4:30114781-30114800 | None:intergenic | 35.0% |
| ! | GGTCAATTTTGAACCAAACT+GGG | + | chr5.4:30114258-30114277 | MS.gene032888:intron | 35.0% |
| ! | TACAATGAAGAGAAGGCATA+AGG | + | chr5.4:30113471-30113490 | MS.gene032888:intron | 35.0% |
| ! | TCGCATTTTCAAAACACAAG+GGG | + | chr5.4:30114563-30114582 | MS.gene032888:CDS | 35.0% |
| ! | TTGGGAGCTTTTTATGAACA+GGG | - | chr5.4:30113094-30113113 | None:intergenic | 35.0% |
| AAGGTATGCCCTTCAGTTTA+AGG | - | chr5.4:30113016-30113035 | None:intergenic | 40.0% | |
| ACTTCCTCCTCATGACAAAT+TGG | + | chr5.4:30114845-30114864 | MS.gene032888:CDS | 40.0% | |
| ACTTGTCTCAACACAAGTTG+GGG | - | chr5.4:30113644-30113663 | None:intergenic | 40.0% | |
| AGAACTAGCCCTTAAACTGA+AGG | + | chr5.4:30113004-30113023 | MS.gene032888:CDS | 40.0% | |
| AGGTATGCCCTTCAGTTTAA+GGG | - | chr5.4:30113015-30113034 | None:intergenic | 40.0% | |
| CAACTTGTCTCAACACAAGT+TGG | - | chr5.4:30113646-30113665 | None:intergenic | 40.0% | |
| CAACTTGTGTTGAGACAAGT+TGG | + | chr5.4:30113644-30113663 | MS.gene032888:intron | 40.0% | |
| CATACCTTACAAGTATGTGG+AGG | + | chr5.4:30113028-30113047 | MS.gene032888:CDS | 40.0% | |
| CTTCCTTTGTGCAAGAGAAT+TGG | - | chr5.4:30113113-30113132 | None:intergenic | 40.0% | |
| GAACTAGCCCTTAAACTGAA+GGG | + | chr5.4:30113005-30113024 | MS.gene032888:CDS | 40.0% | |
| GGTGAAGATCTCTATGTGTA+AGG | - | chr5.4:30114757-30114776 | None:intergenic | 40.0% | |
| GGTTCAAAATTGACCTAGTC+TGG | - | chr5.4:30114253-30114272 | None:intergenic | 40.0% | |
| TCAAAATTGACCTAGTCTGG+GGG | - | chr5.4:30114250-30114269 | None:intergenic | 40.0% | |
| TCACCTTGGGAAACACTATT+AGG | + | chr5.4:30114093-30114112 | MS.gene032888:intron | 40.0% | |
| TCTTCCTCCACATACTTGTA+AGG | - | chr5.4:30113035-30113054 | None:intergenic | 40.0% | |
| TGCTGAATCTGTCAAAATCG+GGG | + | chr5.4:30113766-30113785 | MS.gene032888:intron | 40.0% | |
| ! | AAGTTGTGTTGTTGGGATAC+TGG | + | chr5.4:30112958-30112977 | MS.gene032888:CDS | 40.0% |
| ! | AGACGCCGAAATTTTTCATG+TGG | + | chr5.4:30114784-30114803 | MS.gene032888:CDS | 40.0% |
| ! | AGTTGTGTTGTTGGGATACT+GGG | + | chr5.4:30112959-30112978 | MS.gene032888:CDS | 40.0% |
| ! | ATACTTGGGGTGTTTGAAGA+AGG | + | chr5.4:30114621-30114640 | MS.gene032888:CDS | 40.0% |
| ! | ATGAAGAGAAGGCATAAGGT+CGG | + | chr5.4:30113475-30113494 | MS.gene032888:intron | 40.0% |
| ! | GACGCCGAAATTTTTCATGT+GGG | + | chr5.4:30114785-30114804 | MS.gene032888:CDS | 40.0% |
| ! | GGTTGAAGTTGATTCACCTT+GGG | + | chr5.4:30114080-30114099 | MS.gene032888:intron | 40.0% |
| ! | TACTTGGGGTGTTTGAAGAA+GGG | + | chr5.4:30114622-30114641 | MS.gene032888:CDS | 40.0% |
| !! | AAGGGCTAGAGTTCGTTTTT+AGG | + | chr5.4:30113220-30113239 | MS.gene032888:intron | 40.0% |
| !! | CAGGTAAACTTGTTCCGTTT+TGG | - | chr5.4:30113682-30113701 | None:intergenic | 40.0% |
| !! | CTCTCGCTGTTTTCTACTTT+TGG | + | chr5.4:30114315-30114334 | MS.gene032888:intron | 40.0% |
| !!! | TATTTTGGTGCAGTAAGAGC+TGG | - | chr5.4:30112985-30113004 | None:intergenic | 40.0% |
| AACGAAAGCTATAGGAGACG+TGG | + | chr5.4:30114593-30114612 | MS.gene032888:CDS | 45.0% | |
| AAGGACAAGTCAACCTGTCA+TGG | + | chr5.4:30113579-30113598 | MS.gene032888:intron | 45.0% | |
| AGACGTGGAAGACATACTTG+GGG | + | chr5.4:30114608-30114627 | MS.gene032888:CDS | 45.0% | |
| AGATAGAGGGGACTGAAACA+AGG | + | chr5.4:30113995-30114014 | MS.gene032888:intron | 45.0% | |
| AGGACAAGTCAACCTGTCAT+GGG | + | chr5.4:30113580-30113599 | MS.gene032888:intron | 45.0% | |
| CACCAGTAGATGTTCCTTCA+GGG | - | chr5.4:30114817-30114836 | None:intergenic | 45.0% | |
| CATCATTACAGTGGAACGGA+GGG | + | chr5.4:30114215-30114234 | MS.gene032888:intron | 45.0% | |
| CGAACTCTAGCCCTTTGATA+AGG | - | chr5.4:30113215-30113234 | None:intergenic | 45.0% | |
| CTCCCAATTCTCTTGCACAA+AGG | + | chr5.4:30113107-30113126 | MS.gene032888:CDS | 45.0% | |
| CTTGGTCACAGACAGAGATT+GGG | + | chr5.4:30114125-30114144 | MS.gene032888:intron | 45.0% | |
| GAAGGAACATCTACTGGTGA+AGG | + | chr5.4:30114818-30114837 | MS.gene032888:CDS | 45.0% | |
| GAGACGTGGAAGACATACTT+GGG | + | chr5.4:30114607-30114626 | MS.gene032888:CDS | 45.0% | |
| GATAGAGGGGACTGAAACAA+GGG | + | chr5.4:30113996-30114015 | MS.gene032888:intron | 45.0% | |
| GCCAGAGGATCCTTATCAAA+GGG | + | chr5.4:30113202-30113221 | MS.gene032888:CDS | 45.0% | |
| GGCCTCATGAAATGCTTCAA+AGG | - | chr5.4:30114736-30114755 | None:intergenic | 45.0% | |
| GGCGGCCAATTAAAATAGGT+GGG | - | chr5.4:30113623-30113642 | None:intergenic | 45.0% | |
| GGGCATACCTTACAAGTATG+TGG | + | chr5.4:30113025-30113044 | MS.gene032888:CDS | 45.0% | |
| GTGTTTCGCCGTTGAAGAAT+TGG | - | chr5.4:30114674-30114693 | None:intergenic | 45.0% | |
| TCACCAGTAGATGTTCCTTC+AGG | - | chr5.4:30114818-30114837 | None:intergenic | 45.0% | |
| TCATCATTACAGTGGAACGG+AGG | + | chr5.4:30114214-30114233 | MS.gene032888:intron | 45.0% | |
| TCCTCCTCATGACAAATTGG+TGG | + | chr5.4:30114848-30114867 | MS.gene032888:CDS | 45.0% | |
| TCTTGGTCACAGACAGAGAT+TGG | + | chr5.4:30114124-30114143 | MS.gene032888:intron | 45.0% | |
| TGCCAGAGGATCCTTATCAA+AGG | + | chr5.4:30113201-30113220 | MS.gene032888:CDS | 45.0% | |
| TTGGCCACCAATTTGTCATG+AGG | - | chr5.4:30114855-30114874 | None:intergenic | 45.0% | |
| TTGGGGCGGCCAATTAAAAT+AGG | - | chr5.4:30113627-30113646 | None:intergenic | 45.0% | |
| TTGGTCACAGACAGAGATTG+GGG | + | chr5.4:30114126-30114145 | MS.gene032888:intron | 45.0% | |
| TTTGAAGAAGGGGTCAAGGA+AGG | + | chr5.4:30114633-30114652 | MS.gene032888:CDS | 45.0% | |
| ! | AAATTTCGGCGTCTTTTCGG+AGG | - | chr5.4:30114778-30114797 | None:intergenic | 45.0% |
| ! | ACTTGGGGTGTTTGAAGAAG+GGG | + | chr5.4:30114623-30114642 | MS.gene032888:CDS | 45.0% |
| ! | CTTGTGTTGAGACAAGTTGG+TGG | + | chr5.4:30113647-30113666 | MS.gene032888:intron | 45.0% |
| ! | GCCCGAATTTTGCCTGTTTT+TGG | + | chr5.4:30113809-30113828 | MS.gene032888:intron | 45.0% |
| ! | GGGTTGAAGTTGATTCACCT+TGG | + | chr5.4:30114079-30114098 | MS.gene032888:intron | 45.0% |
| !! | CGCCTTTGAAGCATTTCATG+AGG | + | chr5.4:30114731-30114750 | MS.gene032888:CDS | 45.0% |
| !! | GGCTTTGGGTAGAATTAAGC+AGG | + | chr5.4:30114147-30114166 | MS.gene032888:intron | 45.0% |
| ACAAGTCAACCTGTCATGGG+TGG | + | chr5.4:30113583-30113602 | MS.gene032888:intron | 50.0% | |
| ACAGACAGAGATTGGGGCTT+TGG | + | chr5.4:30114132-30114151 | MS.gene032888:intron | 50.0% | |
| ACCACAATGTCAAGGAGTCC+TGG | - | chr5.4:30114696-30114715 | None:intergenic | 50.0% | |
| ACCAGGACTCCTTGACATTG+TGG | + | chr5.4:30114692-30114711 | MS.gene032888:CDS | 50.0% | |
| ACTCTCAATCCACCCATGAC+AGG | - | chr5.4:30113595-30113614 | None:intergenic | 50.0% | |
| AGGATCCTCTGGCAACAGTT+TGG | - | chr5.4:30113195-30113214 | None:intergenic | 50.0% | |
| CAGACAGAGATTGGGGCTTT+GGG | + | chr5.4:30114133-30114152 | MS.gene032888:intron | 50.0% | |
| GCCACCAATTTGTCATGAGG+AGG | - | chr5.4:30114852-30114871 | None:intergenic | 50.0% | |
| GCCCTTTGATAAGGATCCTC+TGG | - | chr5.4:30113206-30113225 | None:intergenic | 50.0% | |
| GGAGACGTGGAAGACATACT+TGG | + | chr5.4:30114606-30114625 | MS.gene032888:CDS | 50.0% | |
| GGATCCTCTGGCAACAGTTT+GGG | - | chr5.4:30113194-30113213 | None:intergenic | 50.0% | |
| GGGCGGCCAATTAAAATAGG+TGG | - | chr5.4:30113624-30113643 | None:intergenic | 50.0% | |
| GGTGTTTGAAGAAGGGGTCA+AGG | + | chr5.4:30114629-30114648 | MS.gene032888:CDS | 50.0% | |
| TAGTCCCAAACTGTTGCCAG+AGG | + | chr5.4:30113187-30113206 | MS.gene032888:CDS | 50.0% | |
| TCGCAGCTACCACAATGTCA+AGG | - | chr5.4:30114704-30114723 | None:intergenic | 50.0% | |
| TGCCCTGAAGGAACATCTAC+TGG | + | chr5.4:30114812-30114831 | MS.gene032888:CDS | 50.0% | |
| TTCTTCAACGGCGAAACACC+AGG | + | chr5.4:30114675-30114694 | MS.gene032888:CDS | 50.0% | |
| ! | GACATTTTTCTGGGCCCGAA+TGG | + | chr5.4:30113845-30113864 | MS.gene032888:intron | 50.0% |
| ! | TGTCTCAACACAAGTTGGGG+CGG | - | chr5.4:30113641-30113660 | None:intergenic | 50.0% |
| !!! | GGCGCTGATTTTGACCATTC+GGG | - | chr5.4:30113862-30113881 | None:intergenic | 50.0% |
| !!! | GGGCGCTGATTTTGACCATT+CGG | - | chr5.4:30113863-30113882 | None:intergenic | 50.0% |
| AACAGGCAAAATTCGGGCCC+AGG | - | chr5.4:30113807-30113826 | None:intergenic | 55.0% | |
| CATGTGGGTGAATGCCCTGA+AGG | + | chr5.4:30114800-30114819 | MS.gene032888:CDS | 55.0% | |
| TGTCAAAATCGGGGCCCGAT+TGG | + | chr5.4:30113775-30113794 | MS.gene032888:intron | 55.0% | |
| !! | AGACAAGTTGGTGGCGTGGT+GGG | + | chr5.4:30113656-30113675 | MS.gene032888:intron | 55.0% |
| !! | GTTGAGACAAGTTGGTGGCG+TGG | + | chr5.4:30113652-30113671 | MS.gene032888:intron | 55.0% |
| GGCCCAGGACAGAACCAATC+GGG | - | chr5.4:30113792-30113811 | None:intergenic | 60.0% | |
| GGGCCCAGGACAGAACCAAT+CGG | - | chr5.4:30113793-30113812 | None:intergenic | 60.0% | |
| !! | GAGACAAGTTGGTGGCGTGG+TGG | + | chr5.4:30113655-30113674 | MS.gene032888:intron | 60.0% |
| !! | GGCCCGATTGGTTCTGTCCT+GGG | + | chr5.4:30113787-30113806 | MS.gene032888:intron | 60.0% |
| GCTGCTCTCTCCCCCAGACT+AGG | + | chr5.4:30114237-30114256 | MS.gene032888:intron | 65.0% | |
| !! | GGGCCCGATTGGTTCTGTCC+TGG | + | chr5.4:30113786-30113805 | MS.gene032888:intron | 65.0% |
| !! | GGTGGCGTGGTGGGCCAAAA+CGG | + | chr5.4:30113665-30113684 | MS.gene032888:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.4 | gene | 30112939 | 30114893 | 30112939 | ID=MS.gene032888 |
| chr5.4 | mRNA | 30112939 | 30114893 | 30112939 | ID=MS.gene032888.t1;Parent=MS.gene032888 |
| chr5.4 | exon | 30112939 | 30113229 | 30112939 | ID=MS.gene032888.t1.exon1;Parent=MS.gene032888.t1 |
| chr5.4 | CDS | 30112939 | 30113229 | 30112939 | ID=cds.MS.gene032888.t1;Parent=MS.gene032888.t1 |
| chr5.4 | exon | 30114546 | 30114893 | 30114546 | ID=MS.gene032888.t1.exon2;Parent=MS.gene032888.t1 |
| chr5.4 | CDS | 30114546 | 30114893 | 30114546 | ID=cds.MS.gene032888.t1;Parent=MS.gene032888.t1 |
| Gene Sequence |
| Protein sequence |
