Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene95066.t1 | XP_013458694.1 | 96.2 | 209 | 8 | 0 | 19 | 227 | 18 | 226 | 3.00E-113 | 417.9 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene95066.t1 | P57108 | 67.6 | 207 | 66 | 1 | 19 | 225 | 14 | 219 | 3.1e-79 | 296.2 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene95066.t1 | I3T1N4 | 96.2 | 209 | 8 | 0 | 19 | 227 | 18 | 226 | 2.1e-113 | 417.9 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene95066.t1 | MTR_4g134380 | 93.833 | 227 | 11 | 1 | 1 | 227 | 3 | 226 | 1.43e-159 | 441 |
MS.gene95066.t1 | MTR_4g134370 | 83.406 | 229 | 33 | 2 | 1 | 227 | 1 | 226 | 1.27e-139 | 390 |
MS.gene95066.t1 | MTR_4g134380 | 92.045 | 176 | 11 | 1 | 1 | 176 | 3 | 175 | 8.40e-118 | 333 |
MS.gene95066.t1 | MTR_4g134360 | 81.752 | 137 | 22 | 1 | 8 | 144 | 5 | 138 | 6.14e-75 | 223 |
MS.gene95066.t1 | MTR_2g070210 | 30.516 | 213 | 129 | 8 | 16 | 221 | 4 | 204 | 6.64e-16 | 73.9 |
MS.gene95066.t1 | MTR_2g070150 | 32.749 | 171 | 96 | 5 | 16 | 182 | 4 | 159 | 1.65e-15 | 72.8 |
MS.gene95066.t1 | MTR_2g070180 | 31.176 | 170 | 100 | 5 | 16 | 182 | 4 | 159 | 1.48e-14 | 70.5 |
MS.gene95066.t1 | MTR_2g070200 | 31.765 | 170 | 100 | 4 | 16 | 182 | 4 | 160 | 1.36e-13 | 67.8 |
MS.gene95066.t1 | MTR_4g124130 | 32.353 | 170 | 103 | 5 | 14 | 182 | 2 | 160 | 1.77e-13 | 67.4 |
MS.gene95066.t1 | MTR_8g061950 | 28.440 | 218 | 130 | 8 | 19 | 222 | 8 | 213 | 4.97e-13 | 66.6 |
MS.gene95066.t1 | MTR_3g064700 | 29.851 | 201 | 122 | 5 | 19 | 203 | 5 | 202 | 2.74e-12 | 63.9 |
MS.gene95066.t1 | MTR_2g070140 | 32.911 | 158 | 87 | 5 | 29 | 182 | 1 | 143 | 3.37e-12 | 63.5 |
MS.gene95066.t1 | MTR_3g450930 | 31.361 | 169 | 101 | 5 | 26 | 185 | 11 | 173 | 3.37e-12 | 63.9 |
MS.gene95066.t1 | MTR_7g065660 | 29.952 | 207 | 113 | 8 | 30 | 223 | 21 | 208 | 7.57e-12 | 63.2 |
MS.gene95066.t1 | MTR_2g070130 | 29.825 | 171 | 101 | 6 | 16 | 182 | 4 | 159 | 1.51e-11 | 62.0 |
MS.gene95066.t1 | MTR_0186s0030 | 36.170 | 94 | 56 | 2 | 15 | 107 | 3 | 93 | 2.48e-11 | 60.1 |
MS.gene95066.t1 | MTR_5g090910 | 31.447 | 159 | 101 | 5 | 30 | 182 | 15 | 171 | 2.64e-11 | 61.2 |
MS.gene95066.t1 | MTR_8g056940 | 28.070 | 171 | 106 | 5 | 15 | 182 | 3 | 159 | 4.97e-11 | 60.8 |
MS.gene95066.t1 | MTR_7g065720 | 25.728 | 206 | 124 | 7 | 30 | 223 | 21 | 209 | 5.55e-11 | 60.5 |
MS.gene95066.t1 | MTR_2g070120 | 29.412 | 170 | 103 | 6 | 16 | 182 | 4 | 159 | 7.99e-11 | 60.1 |
MS.gene95066.t1 | MTR_1g088845 | 26.190 | 168 | 113 | 3 | 25 | 185 | 12 | 175 | 8.55e-11 | 60.1 |
MS.gene95066.t1 | MTR_3g450790 | 29.747 | 158 | 96 | 5 | 30 | 178 | 15 | 166 | 8.66e-11 | 60.1 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene95066.t1 | AT2G02380 | 61.792 | 212 | 80 | 1 | 14 | 225 | 9 | 219 | 6.04e-95 | 277 |
MS.gene95066.t1 | AT2G02390 | 60.849 | 212 | 82 | 1 | 14 | 225 | 6 | 216 | 3.91e-92 | 270 |
MS.gene95066.t1 | AT2G02390 | 58.904 | 219 | 82 | 2 | 14 | 225 | 6 | 223 | 3.61e-89 | 263 |
MS.gene95066.t1 | AT2G02390 | 61.622 | 185 | 70 | 1 | 14 | 198 | 6 | 189 | 2.77e-78 | 233 |
MS.gene95066.t1 | AT2G02390 | 58.333 | 168 | 69 | 1 | 58 | 225 | 21 | 187 | 3.73e-68 | 208 |
MS.gene95066.t1 | AT2G30870 | 33.333 | 162 | 93 | 4 | 26 | 178 | 11 | 166 | 1.13e-15 | 73.6 |
MS.gene95066.t1 | AT2G30860 | 32.911 | 158 | 91 | 5 | 30 | 178 | 15 | 166 | 1.11e-12 | 65.1 |
MS.gene95066.t1 | AT2G29460 | 27.189 | 217 | 135 | 6 | 12 | 219 | 3 | 205 | 1.42e-12 | 65.1 |
MS.gene95066.t1 | AT1G78320 | 36.842 | 95 | 56 | 2 | 14 | 107 | 2 | 93 | 1.80e-12 | 64.7 |
MS.gene95066.t1 | AT2G30860 | 35.897 | 117 | 71 | 3 | 30 | 142 | 15 | 131 | 5.39e-12 | 62.4 |
MS.gene95066.t1 | AT2G29490 | 28.111 | 217 | 133 | 6 | 12 | 219 | 3 | 205 | 6.04e-12 | 63.2 |
MS.gene95066.t1 | AT2G29480 | 28.571 | 217 | 132 | 6 | 12 | 219 | 3 | 205 | 3.88e-11 | 61.2 |
MS.gene95066.t1 | AT2G29450 | 39.583 | 96 | 53 | 3 | 13 | 107 | 3 | 94 | 6.73e-11 | 60.5 |
Find 45 sgRNAs with CRISPR-Local
Find 243 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
GCTTACATACCAGGAGATTT+AGG | 0.267068 | 8.2:+460728 | None:intergenic |
ACTGCATCTGGCTGATTCTC+TGG | 0.358392 | 8.2:+458402 | None:intergenic |
ATTATGAGATCCCAGCATTC+CGG | 0.359242 | 8.2:-458434 | MS.gene95066:CDS |
GGCAAAGCATCCCGGAATGC+TGG | 0.381164 | 8.2:+458423 | None:intergenic |
ATCAGCTAGCCTACTGCATC+TGG | 0.405955 | 8.2:+458390 | None:intergenic |
GCAGGGCAATCGACGAGAAC+AGG | 0.414471 | 8.2:+461166 | None:intergenic |
TTATGAGATCCCAGCATTCC+GGG | 0.439574 | 8.2:-458433 | MS.gene95066:CDS |
TCCCTAATGATATTCACAAA+AGG | 0.442381 | 8.2:-461001 | MS.gene95066:CDS |
CCAGGAGATTTAGGTTATGA+AGG | 0.442586 | 8.2:+460737 | None:intergenic |
AGAACAGGAACAAAACCAAC+AGG | 0.454426 | 8.2:+461181 | None:intergenic |
CTTTGAGGTTGAGAGCGATT+CGG | 0.455342 | 8.2:+461972 | None:intergenic |
AGCTGATCCTGTATTCGTAT+TGG | 0.458748 | 8.2:-462018 | MS.gene95066:CDS |
CAAAACCAACAGGGTTGAGC+TGG | 0.462938 | 8.2:+461191 | None:intergenic |
TCATGTAATCTTGATAGAAT+AGG | 0.464979 | 8.2:+458462 | None:intergenic |
AACTCCTCCAATACGAATAC+AGG | 0.470145 | 8.2:+462011 | None:intergenic |
TGACTCTTTCGCTATTATCA+TGG | 0.474922 | 8.2:-461134 | MS.gene95066:intron |
CCCTAATGATATTCACAAAA+GGG | 0.476284 | 8.2:-461000 | MS.gene95066:CDS |
CAAAGCAGTTAATCTGTTGA+AGG | 0.481213 | 8.2:-461328 | MS.gene95066:CDS |
CAGGAGATTTAGGTTATGAA+GGG | 0.506586 | 8.2:+460738 | None:intergenic |
TGTTTGCAGAAGTACATTGA+GGG | 0.510685 | 8.2:-460579 | MS.gene95066:intron |
TGATCCTGTATTCGTATTGG+AGG | 0.521935 | 8.2:-462015 | MS.gene95066:CDS |
AAGTACATTGAGGGAAAAGT+TGG | 0.525087 | 8.2:-460570 | MS.gene95066:CDS |
GGGAGCAAAGGATGTTGTTG+AGG | 0.525664 | 8.2:+461020 | None:intergenic |
TTTCTCCAGCTCAACCCTGT+TGG | 0.527912 | 8.2:-461196 | MS.gene95066:CDS |
GCAAAGCATCCCGGAATGCT+GGG | 0.530141 | 8.2:+458424 | None:intergenic |
CTGTTTGCAGAAGTACATTG+AGG | 0.532003 | 8.2:-460580 | MS.gene95066:intron |
GCATTGCTCGCAGTATTTGG+AGG | 0.532414 | 8.2:-461051 | MS.gene95066:intron |
AGGGAAGCAACCTACCTTTG+AGG | 0.540551 | 8.2:+461957 | None:intergenic |
CCTTCATAACCTAAATCTCC+TGG | 0.540614 | 8.2:-460737 | MS.gene95066:intron |
GATTCTCTGGCAAAGCATCC+CGG | 0.545884 | 8.2:+458415 | None:intergenic |
TTGATTACATTCTGGACCCA+TGG | 0.553283 | 8.2:+460531 | None:intergenic |
CACACTGGGAGGTATGCTAC+TGG | 0.560769 | 8.2:-459455 | MS.gene95066:CDS |
TGAATATCATTAGGGAGCAA+AGG | 0.562718 | 8.2:+461008 | None:intergenic |
GAGAGCGATTCGGACTCGAA+AGG | 0.587399 | 8.2:+461982 | None:intergenic |
AAGGGAGAACAATCTCATCC+TGG | 0.593330 | 8.2:-461309 | MS.gene95066:intron |
AGCTATTGAAAGAACACACT+GGG | 0.605194 | 8.2:-459469 | MS.gene95066:CDS |
CGAATCGCTCTCAACCTCAA+AGG | 0.606649 | 8.2:-461971 | MS.gene95066:intron |
AAAGCAGTTAATCTGTTGAA+GGG | 0.615542 | 8.2:-461327 | MS.gene95066:CDS |
GAGAATCAGCCAGATGCAGT+AGG | 0.616368 | 8.2:-458399 | MS.gene95066:CDS |
AGGAGATTTAGGTTATGAAG+GGG | 0.629231 | 8.2:+460739 | None:intergenic |
AAGCTATTGAAAGAACACAC+TGG | 0.632858 | 8.2:-459470 | MS.gene95066:CDS |
TTAGATGCAGCATGTAACTG+AGG | 0.670877 | 8.2:+459095 | None:intergenic |
TATTGAAAGAACACACTGGG+AGG | 0.700146 | 8.2:-459466 | MS.gene95066:CDS |
TAAGAGATTCAACATTCACA+TGG | 0.722671 | 8.2:-459075 | MS.gene95066:intron |
GAACAGGAACAAAACCAACA+GGG | 0.722903 | 8.2:+461182 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | ACATTCAATTATAAAAATAT+TGG | + | chr8.2:461054-461073 | None:intergenic | 10.0% |
!! | ACCAAAAATAAAATAAAAAT+AGG | - | chr8.2:460502-460521 | MS.gene95066:intron | 10.0% |
!!! | AAAAAAAATTTTTGTTTGTT+AGG | - | chr8.2:460960-460979 | MS.gene95066:intron | 10.0% |
!!! | TAATTTTATTTTTTAGTATC+CGG | - | chr8.2:459129-459148 | MS.gene95066:intron | 10.0% |
!!! | TCCTATTTTTATTTTATTTT+TGG | + | chr8.2:460506-460525 | None:intergenic | 10.0% |
!! | ATTTCACTATAGAAAATAAA+AGG | + | chr8.2:461996-462015 | None:intergenic | 15.0% |
!! | GTATGTAAAAAAAAACAAAT+CGG | - | chr8.2:458795-458814 | MS.gene95066:intron | 15.0% |
!!! | AAAATTTTTTTTATCTGTGA+AGG | + | chr8.2:460952-460971 | None:intergenic | 15.0% |
!!! | AATTTTATTTTTTAGTATCC+GGG | - | chr8.2:459130-459149 | MS.gene95066:intron | 15.0% |
!!! | ACAAGTTTTTGAAAATTAAT+AGG | - | chr8.2:461313-461332 | MS.gene95066:CDS | 15.0% |
!!! | CAAGTTTTTGAAAATTAATA+GGG | - | chr8.2:461314-461333 | MS.gene95066:CDS | 15.0% |
!!! | TCAAAAAAGTTTCTTTTTTT+TGG | + | chr8.2:459063-459082 | None:intergenic | 15.0% |
!! | AAATTGGAAGAATTTATTGA+TGG | - | chr8.2:458880-458899 | MS.gene95066:intron | 20.0% |
!! | AATAAAAATAGGAACATATG+AGG | - | chr8.2:460513-460532 | MS.gene95066:intron | 20.0% |
!! | AATAAAAATATAAAGGAGTG+AGG | + | chr8.2:460804-460823 | None:intergenic | 20.0% |
!! | AATATAAGAGAAACCATTTA+CGG | + | chr8.2:459756-459775 | None:intergenic | 20.0% |
!! | ACTTAATTACTTATAGTATG+TGG | + | chr8.2:459611-459630 | None:intergenic | 20.0% |
!! | AGTATAGTTAGTAATATGTT+GGG | - | chr8.2:460843-460862 | MS.gene95066:intron | 20.0% |
!! | ATAAATTATGACATAGGTTA+GGG | + | chr8.2:459300-459319 | None:intergenic | 20.0% |
!! | GATACTATAAATTATGACAT+AGG | + | chr8.2:459306-459325 | None:intergenic | 20.0% |
!! | TACATTTCTTGATAAACATT+TGG | - | chr8.2:460442-460461 | MS.gene95066:intron | 20.0% |
!! | TAGTATAGTTAGTAATATGT+TGG | - | chr8.2:460842-460861 | MS.gene95066:intron | 20.0% |
!! | TATAAATTATGACATAGGTT+AGG | + | chr8.2:459301-459320 | None:intergenic | 20.0% |
!! | TGTTGAATTGATGTTAAAAA+GGG | + | chr8.2:458624-458643 | None:intergenic | 20.0% |
!!! | ATTGATTTGAATTTTGAACA+AGG | - | chr8.2:458476-458495 | MS.gene95066:intron | 20.0% |
!!! | ATTTTAACGACACTTAAAAA+AGG | - | chr8.2:458970-458989 | MS.gene95066:intron | 20.0% |
!!! | ATTTTATTTTTTAGTATCCG+GGG | - | chr8.2:459131-459150 | MS.gene95066:intron | 20.0% |
!!! | TAAATTCTTTCTAAAGCTAT+TGG | + | chr8.2:460091-460110 | None:intergenic | 20.0% |
!!! | TAAATTTTTGCAAAAGTACA+TGG | - | chr8.2:461814-461833 | MS.gene95066:intron | 20.0% |
!!! | TCTTTCTTGGAATATATTTT+TGG | - | chr8.2:461367-461386 | MS.gene95066:intron | 20.0% |
!!! | TGTTTTGCTGTTATTTAAAA+GGG | - | chr8.2:459886-459905 | MS.gene95066:intron | 20.0% |
!!! | TTTTAACGACACTTAAAAAA+GGG | - | chr8.2:458971-458990 | MS.gene95066:intron | 20.0% |
! | AAATTCAATCTTTCGTAAGT+TGG | - | chr8.2:460542-460561 | MS.gene95066:CDS | 25.0% |
! | AACTTACGAAAGATTGAATT+TGG | + | chr8.2:460543-460562 | None:intergenic | 25.0% |
! | AAGTAGAAGTTTCATCTAAA+TGG | - | chr8.2:460271-460290 | MS.gene95066:intron | 25.0% |
! | AATGAAACACATACGAAATT+TGG | - | chr8.2:460343-460362 | MS.gene95066:intron | 25.0% |
! | ACACGTTTATTATCATTTGT+AGG | - | chr8.2:461424-461443 | MS.gene95066:intron | 25.0% |
! | AGACATTGTAGATTTAGAAA+AGG | + | chr8.2:459462-459481 | None:intergenic | 25.0% |
! | AGTGAGTCTTAATTTCTTTA+AGG | + | chr8.2:459174-459193 | None:intergenic | 25.0% |
! | ATATAAGAGAAACCATTTAC+GGG | + | chr8.2:459755-459774 | None:intergenic | 25.0% |
! | CAAATGATAATAAACGTGTT+AGG | + | chr8.2:461423-461442 | None:intergenic | 25.0% |
! | GTGAGTCTTAATTTCTTTAA+GGG | + | chr8.2:459173-459192 | None:intergenic | 25.0% |
! | GTGTTGAATTGATGTTAAAA+AGG | + | chr8.2:458625-458644 | None:intergenic | 25.0% |
! | GTTAAAAAAAGAAGAAAGAG+CGG | - | chr8.2:458750-458769 | MS.gene95066:intron | 25.0% |
! | TAAATTATGACATAGGTTAG+GGG | + | chr8.2:459299-459318 | None:intergenic | 25.0% |
! | TACTAAAAGCTTAAGCAAAT+AGG | + | chr8.2:461681-461700 | None:intergenic | 25.0% |
! | TCATGTAATCTTGATAGAAT+AGG | + | chr8.2:462100-462119 | None:intergenic | 25.0% |
! | TTTAACCTTTACATTCATTC+AGG | - | chr8.2:459193-459212 | MS.gene95066:intron | 25.0% |
! | TTTCTCTCTCTCAAAATTAT+AGG | - | chr8.2:459862-459881 | MS.gene95066:intron | 25.0% |
! | TTTGAAGAACACAAAATGAA+AGG | + | chr8.2:461729-461748 | None:intergenic | 25.0% |
!! | ATGATTTTGAACCTAACAAA+TGG | - | chr8.2:460632-460651 | MS.gene95066:intron | 25.0% |
!! | ATTAAAACGAGAGTATAACA+AGG | - | chr8.2:458903-458922 | MS.gene95066:intron | 25.0% |
!! | TGTTATTTAAAAGGGAGAAA+AGG | - | chr8.2:459894-459913 | MS.gene95066:intron | 25.0% |
!! | TTCTTTCAATAGCTTTTCAA+GGG | + | chr8.2:461084-461103 | None:intergenic | 25.0% |
!!! | CTGTTTTGCTGTTATTTAAA+AGG | - | chr8.2:459885-459904 | MS.gene95066:intron | 25.0% |
!!! | TTTTATTTTTTAGTATCCGG+GGG | - | chr8.2:459132-459151 | MS.gene95066:intron | 25.0% |
!!! | TTTTTTTTATCTGTGAAGGA+CGG | + | chr8.2:460948-460967 | None:intergenic | 25.0% |
AAAAAATCCACTATCTCAGT+TGG | - | chr8.2:458939-458958 | MS.gene95066:intron | 30.0% | |
AAAAACTTGTGATCTGACTT+TGG | + | chr8.2:461303-461322 | None:intergenic | 30.0% | |
AAACATTTGGACTTAATCTG+TGG | - | chr8.2:460455-460474 | MS.gene95066:intron | 30.0% | |
AAACCTATCTCTAGTAAGTA+GGG | + | chr8.2:460987-461006 | None:intergenic | 30.0% | |
AAAGAGGATGCATTCATTTA+AGG | - | chr8.2:461919-461938 | MS.gene95066:intron | 30.0% | |
AAAGAGTCAAAAATAACAGC+AGG | + | chr8.2:459414-459433 | None:intergenic | 30.0% | |
AAAGATTCACTCCATTTGTT+AGG | + | chr8.2:460646-460665 | None:intergenic | 30.0% | |
AAAGCAGTTAATCTGTTGAA+GGG | - | chr8.2:459232-459251 | MS.gene95066:intron | 30.0% | |
AACATGACCCTTTCTTTAAT+TGG | + | chr8.2:459001-459020 | None:intergenic | 30.0% | |
AAGAGGATGCATTCATTTAA+GGG | - | chr8.2:461920-461939 | MS.gene95066:intron | 30.0% | |
AAGAGTCAAAAATAACAGCA+GGG | + | chr8.2:459413-459432 | None:intergenic | 30.0% | |
ACGAAATTTGGCTATTACAA+TGG | - | chr8.2:460355-460374 | MS.gene95066:intron | 30.0% | |
ATAGAATAGGAAACTCATTC+TGG | + | chr8.2:462087-462106 | None:intergenic | 30.0% | |
ATTCACATGGTAGTATTCTA+TGG | - | chr8.2:461497-461516 | MS.gene95066:intron | 30.0% | |
CAACGTTTCAAAGATCAAAT+TGG | - | chr8.2:461884-461903 | MS.gene95066:intron | 30.0% | |
CAATCAAAGAGCTAAAGTAA+TGG | + | chr8.2:461589-461608 | None:intergenic | 30.0% | |
CCCTAATGATATTCACAAAA+GGG | - | chr8.2:459559-459578 | MS.gene95066:intron | 30.0% | |
CGTTTATTATCATTTGTAGG+CGG | - | chr8.2:461427-461446 | MS.gene95066:intron | 30.0% | |
GACATAATTGACACTAATGA+TGG | + | chr8.2:460140-460159 | None:intergenic | 30.0% | |
GAGCGATACATCAAATTTAT+TGG | - | chr8.2:458831-458850 | MS.gene95066:intron | 30.0% | |
GTCCAGAATGTAATCAAAAA+AGG | - | chr8.2:460034-460053 | MS.gene95066:intron | 30.0% | |
TAAGAGATTCAACATTCACA+TGG | - | chr8.2:461484-461503 | MS.gene95066:intron | 30.0% | |
TCCCTAATGATATTCACAAA+AGG | - | chr8.2:459558-459577 | MS.gene95066:intron | 30.0% | |
TGTTAGGTTCAAAATCATTG+AGG | + | chr8.2:460630-460649 | None:intergenic | 30.0% | |
TTCACATGGTAGTATTCTAT+GGG | - | chr8.2:461498-461517 | MS.gene95066:intron | 30.0% | |
! | ACATTGCTAGCCAAAAATTT+TGG | + | chr8.2:461194-461213 | None:intergenic | 30.0% |
! | CATTCTGGTTGAACAATTAA+GGG | + | chr8.2:462072-462091 | None:intergenic | 30.0% |
! | CATTGCTAGCCAAAAATTTT+GGG | + | chr8.2:461193-461212 | None:intergenic | 30.0% |
! | CCCTTTTGTGAATATCATTA+GGG | + | chr8.2:459562-459581 | None:intergenic | 30.0% |
! | GTTCTTTCAATAGCTTTTCA+AGG | + | chr8.2:461085-461104 | None:intergenic | 30.0% |
! | TCATTCTGGTTGAACAATTA+AGG | + | chr8.2:462073-462092 | None:intergenic | 30.0% |
! | TGAAACTTCTACTTCTCTTT+TGG | + | chr8.2:460265-460284 | None:intergenic | 30.0% |
! | TTGGTTTCTCTTCTTATTTC+TGG | + | chr8.2:460487-460506 | None:intergenic | 30.0% |
! | TTTTTGCTTTAACCACTTGT+TGG | - | chr8.2:461839-461858 | MS.gene95066:intron | 30.0% |
!! | ATATTTTTGTGCGGGAATAA+GGG | - | chr8.2:461527-461546 | MS.gene95066:intron | 30.0% |
!! | CTTATATTGATTTCATCCAC+AGG | - | chr8.2:459768-459787 | MS.gene95066:intron | 30.0% |
!! | TATATTTTTGTGCGGGAATA+AGG | - | chr8.2:461526-461545 | MS.gene95066:intron | 30.0% |
!! | TGGAGTTAGTTCTGTTAAAA+GGG | - | chr8.2:461159-461178 | MS.gene95066:CDS | 30.0% |
!! | TTACTTTAGCTCTTTGATTG+AGG | - | chr8.2:461589-461608 | MS.gene95066:intron | 30.0% |
!! | TTGGAGTTAGTTCTGTTAAA+AGG | - | chr8.2:461158-461177 | MS.gene95066:CDS | 30.0% |
!!! | AGCCTTTTTTGATTACATTC+TGG | + | chr8.2:460039-460058 | None:intergenic | 30.0% |
!!! | TTTTTTTATCTGTGAAGGAC+GGG | + | chr8.2:460947-460966 | None:intergenic | 30.0% |
AAGCTATTGAAAGAACACAC+TGG | - | chr8.2:461089-461108 | MS.gene95066:intron | 35.0% | |
AAGCTTAAGCAAATAGGCAA+TGG | + | chr8.2:461675-461694 | None:intergenic | 35.0% | |
AAGTACATTGAGGGAAAAGT+TGG | - | chr8.2:459989-460008 | MS.gene95066:intron | 35.0% | |
AATGGAGTGAATCTTTCGAT+TGG | - | chr8.2:460650-460669 | MS.gene95066:intron | 35.0% | |
ACTGAAACTCGTATCTAGTA+AGG | + | chr8.2:461010-461029 | None:intergenic | 35.0% | |
AGAGGATATCTATCTCCTTT+AGG | - | chr8.2:460603-460622 | MS.gene95066:intron | 35.0% | |
AGAGGATGCATTCATTTAAG+GGG | - | chr8.2:461921-461940 | MS.gene95066:intron | 35.0% | |
AGCTATTGAAAGAACACACT+GGG | - | chr8.2:461090-461109 | MS.gene95066:intron | 35.0% | |
AGGGGTTGTAATGAAACATA+TGG | - | chr8.2:461546-461565 | MS.gene95066:intron | 35.0% | |
AGTACGTCATGTGATGAATT+TGG | + | chr8.2:462046-462065 | None:intergenic | 35.0% | |
AGTGCATGCAAACGAAAAAT+TGG | - | chr8.2:458864-458883 | MS.gene95066:intron | 35.0% | |
AGTTAGTAATATGTTGGGAG+TGG | - | chr8.2:460848-460867 | MS.gene95066:intron | 35.0% | |
ATATCAACCAGTTGTATTGC+TGG | - | chr8.2:460579-460598 | MS.gene95066:intron | 35.0% | |
ATCTAAATGGCATGGAAATG+AGG | - | chr8.2:460284-460303 | MS.gene95066:intron | 35.0% | |
ATGGATAAAACCAGTCATTG+TGG | - | chr8.2:461951-461970 | MS.gene95066:intron | 35.0% | |
CAAAATCATTGAGGTCCTAA+AGG | + | chr8.2:460621-460640 | None:intergenic | 35.0% | |
CAAAGCAGTTAATCTGTTGA+AGG | - | chr8.2:459231-459250 | MS.gene95066:intron | 35.0% | |
CACTAGATTTGCATCTTTCT+TGG | - | chr8.2:461354-461373 | MS.gene95066:intron | 35.0% | |
CATGGTATGTTGCTAATGAT+TGG | - | chr8.2:461139-461158 | MS.gene95066:CDS | 35.0% | |
CTGTAAATCCACAAAATGGT+TGG | + | chr8.2:459926-459945 | None:intergenic | 35.0% | |
CTGTTAAAGTGATGACAAGT+TGG | - | chr8.2:459655-459674 | MS.gene95066:intron | 35.0% | |
GAAACCTATCTCTAGTAAGT+AGG | + | chr8.2:460988-461007 | None:intergenic | 35.0% | |
GAAGTTTCATCTAAATGGCA+TGG | - | chr8.2:460276-460295 | MS.gene95066:intron | 35.0% | |
GGATTTACAGTGCATATGAT+AGG | - | chr8.2:459936-459955 | MS.gene95066:intron | 35.0% | |
GTAATCAAAAAAGGCTTCAC+AGG | - | chr8.2:460043-460062 | MS.gene95066:intron | 35.0% | |
GTACGTCATGTGATGAATTT+GGG | + | chr8.2:462045-462064 | None:intergenic | 35.0% | |
GTTAGTAATATGTTGGGAGT+GGG | - | chr8.2:460849-460868 | MS.gene95066:intron | 35.0% | |
TCATTTAAGGGGGTTCAATA+TGG | - | chr8.2:461932-461951 | MS.gene95066:intron | 35.0% | |
TCCAGAACATGAATTTGAAC+AGG | + | chr8.2:459712-459731 | None:intergenic | 35.0% | |
TCCTCAATTTAACCCGTAAA+TGG | - | chr8.2:459740-459759 | MS.gene95066:intron | 35.0% | |
TCCTGTTCAAATTCATGTTC+TGG | - | chr8.2:459708-459727 | MS.gene95066:intron | 35.0% | |
TGAATATCATTAGGGAGCAA+AGG | + | chr8.2:459554-459573 | None:intergenic | 35.0% | |
TGACTCTTTCGCTATTATCA+TGG | - | chr8.2:459425-459444 | MS.gene95066:intron | 35.0% | |
TGAGACCTGAATGAATGTAA+AGG | + | chr8.2:459201-459220 | None:intergenic | 35.0% | |
TGCACTGTAAATCCACAAAA+TGG | + | chr8.2:459930-459949 | None:intergenic | 35.0% | |
TTAGTAATATGTTGGGAGTG+GGG | - | chr8.2:460850-460869 | MS.gene95066:intron | 35.0% | |
TTGAGAGAGAGAAAAAGAGA+TGG | + | chr8.2:459856-459875 | None:intergenic | 35.0% | |
TTGGTCATTCAATCAGAAAG+AGG | - | chr8.2:461903-461922 | MS.gene95066:intron | 35.0% | |
! | ACATATGGCTTTTATTGCTG+TGG | - | chr8.2:461561-461580 | MS.gene95066:intron | 35.0% |
! | ACCATTTACGGGTTAAATTG+AGG | + | chr8.2:459744-459763 | None:intergenic | 35.0% |
! | AGGAGATTTAGGTTATGAAG+GGG | + | chr8.2:459823-459842 | None:intergenic | 35.0% |
! | CAAAAGGGCTATCAATTTTC+AGG | - | chr8.2:459574-459593 | MS.gene95066:intron | 35.0% |
! | CAGGAGATTTAGGTTATGAA+GGG | + | chr8.2:459824-459843 | None:intergenic | 35.0% |
! | GCCCTTTTGTGAATATCATT+AGG | + | chr8.2:459563-459582 | None:intergenic | 35.0% |
! | GTTTACTTTCTCGATCCTTT+TGG | - | chr8.2:460238-460257 | MS.gene95066:intron | 35.0% |
! | TACTGGAGACAAAGTTTTCA+TGG | - | chr8.2:461121-461140 | MS.gene95066:intron | 35.0% |
! | TACTTCTCTTTTGGACCAAA+AGG | + | chr8.2:460256-460275 | None:intergenic | 35.0% |
! | TCTTTAAGGGAAATGCTAAC+CGG | + | chr8.2:459160-459179 | None:intergenic | 35.0% |
! | TGAATCTTTCGATTGGTCAA+AGG | - | chr8.2:460657-460676 | MS.gene95066:intron | 35.0% |
! | TGTTTGCAGAAGTACATTGA+GGG | - | chr8.2:459980-459999 | MS.gene95066:intron | 35.0% |
!! | AGGGAGTACCAATTAAAGAA+AGG | - | chr8.2:458990-459009 | MS.gene95066:intron | 35.0% |
!! | GGGAGTACCAATTAAAGAAA+GGG | - | chr8.2:458991-459010 | MS.gene95066:intron | 35.0% |
!! | TATTTTTGTGCGGGAATAAG+GGG | - | chr8.2:461528-461547 | MS.gene95066:intron | 35.0% |
!! | TGACAAATGTTATTTCCACC+AGG | + | chr8.2:460695-460714 | None:intergenic | 35.0% |
AAAAAAGAGAGGATCGAACC+AGG | + | chr8.2:459271-459290 | None:intergenic | 40.0% | |
AAAGAGATGGCTTACATACC+AGG | + | chr8.2:459843-459862 | None:intergenic | 40.0% | |
AACACAAGGCTAAAACTGAC+AGG | + | chr8.2:461634-461653 | None:intergenic | 40.0% | |
AACTCCTCCAATACGAATAC+AGG | + | chr8.2:458551-458570 | None:intergenic | 40.0% | |
ACACAAGGCTAAAACTGACA+GGG | + | chr8.2:461633-461652 | None:intergenic | 40.0% | |
AGAACAGGAACAAAACCAAC+AGG | + | chr8.2:459381-459400 | None:intergenic | 40.0% | |
AGCTGATCCTGTATTCGTAT+TGG | - | chr8.2:458541-458560 | MS.gene95066:intron | 40.0% | |
ATTATGAGATCCCAGCATTC+CGG | - | chr8.2:462125-462144 | MS.gene95066:intron | 40.0% | |
ATTTGTCAGCTTGAGCATTC+AGG | - | chr8.2:460707-460726 | MS.gene95066:intron | 40.0% | |
CCCTGATGAAAAACTTCCAT+GGG | - | chr8.2:460012-460031 | MS.gene95066:intron | 40.0% | |
CCTTCATAACCTAAATCTCC+TGG | - | chr8.2:459822-459841 | MS.gene95066:intron | 40.0% | |
GAACAGGAACAAAACCAACA+GGG | + | chr8.2:459380-459399 | None:intergenic | 40.0% | |
GAGGATGCATTCATTTAAGG+GGG | - | chr8.2:461922-461941 | MS.gene95066:intron | 40.0% | |
GCTTACATACCAGGAGATTT+AGG | + | chr8.2:459834-459853 | None:intergenic | 40.0% | |
TAAATGGCATGGAAATGAGG+TGG | - | chr8.2:460287-460306 | MS.gene95066:intron | 40.0% | |
TAGGGGTAAGGAAAAAAGAG+AGG | + | chr8.2:459282-459301 | None:intergenic | 40.0% | |
TATGACATAGGTTAGGGGTA+AGG | + | chr8.2:459294-459313 | None:intergenic | 40.0% | |
TATGCATTGCTCGCAGTATT+TGG | - | chr8.2:459505-459524 | MS.gene95066:intron | 40.0% | |
TATTGAAAGAACACACTGGG+AGG | - | chr8.2:461093-461112 | MS.gene95066:intron | 40.0% | |
TCAATGCGATGAGAGCAATT+GGG | - | chr8.2:460401-460420 | MS.gene95066:intron | 40.0% | |
TGAAGGACGGGATATAATGT+TGG | + | chr8.2:460935-460954 | None:intergenic | 40.0% | |
TGATCCTGTATTCGTATTGG+AGG | - | chr8.2:458544-458563 | MS.gene95066:intron | 40.0% | |
TTAGATGCAGCATGTAACTG+AGG | + | chr8.2:461467-461486 | None:intergenic | 40.0% | |
TTGATTACATTCTGGACCCA+TGG | + | chr8.2:460031-460050 | None:intergenic | 40.0% | |
TTTGAGAGTTCCACAATGAC+TGG | + | chr8.2:461964-461983 | None:intergenic | 40.0% | |
! | ACCCATGGAAGTTTTTCATC+AGG | + | chr8.2:460016-460035 | None:intergenic | 40.0% |
! | AGCCAAAAATTTTGGGCTAC+TGG | + | chr8.2:461186-461205 | None:intergenic | 40.0% |
! | AGGAGTGTGAACAAAACACA+AGG | + | chr8.2:461648-461667 | None:intergenic | 40.0% |
! | CAAAGGTATACTAGTAGACC+TGG | - | chr8.2:460674-460693 | MS.gene95066:intron | 40.0% |
! | CCAGGAGATTTAGGTTATGA+AGG | + | chr8.2:459825-459844 | None:intergenic | 40.0% |
! | CCCATGGAAGTTTTTCATCA+GGG | + | chr8.2:460015-460034 | None:intergenic | 40.0% |
! | CTGTTTGCAGAAGTACATTG+AGG | - | chr8.2:459979-459998 | MS.gene95066:intron | 40.0% |
! | GGAACAAACCAACCATTTTG+TGG | - | chr8.2:459915-459934 | MS.gene95066:intron | 40.0% |
! | GTCCAGTAGCCCAAAATTTT+TGG | - | chr8.2:461181-461200 | MS.gene95066:CDS | 40.0% |
! | TACGGGTTAAATTGAGGAAC+AGG | + | chr8.2:459738-459757 | None:intergenic | 40.0% |
!! | GGCTCGATATATTTTTGTGC+GGG | - | chr8.2:461519-461538 | MS.gene95066:intron | 40.0% |
!! | GGGCTCGATATATTTTTGTG+CGG | - | chr8.2:461518-461537 | MS.gene95066:intron | 40.0% |
!! | GTGTTTTGTTCACACTCCTT+TGG | - | chr8.2:461649-461668 | MS.gene95066:intron | 40.0% |
AAGGGAGAACAATCTCATCC+TGG | - | chr8.2:459250-459269 | MS.gene95066:intron | 45.0% | |
AGCAAATAGGCAATGGCCAA+AGG | + | chr8.2:461668-461687 | None:intergenic | 45.0% | |
AGGTATACTAGTAGACCTGG+TGG | - | chr8.2:460677-460696 | MS.gene95066:intron | 45.0% | |
CAAGAAGTGGAGTGATACAG+AGG | + | chr8.2:460889-460908 | None:intergenic | 45.0% | |
CTTCACTAACAGCCAACAAG+TGG | + | chr8.2:461854-461873 | None:intergenic | 45.0% | |
GAAACAATACTGACAGCCTG+TGG | + | chr8.2:459787-459806 | None:intergenic | 45.0% | |
GCCCTGATGAAAAACTTCCA+TGG | - | chr8.2:460011-460030 | MS.gene95066:intron | 45.0% | |
GGTCCCTACTTACTAGAGAT+AGG | - | chr8.2:460981-461000 | MS.gene95066:intron | 45.0% | |
GTACACTCCAACTGAGATAG+TGG | + | chr8.2:458949-458968 | None:intergenic | 45.0% | |
GTCAATGCGATGAGAGCAAT+TGG | - | chr8.2:460400-460419 | MS.gene95066:intron | 45.0% | |
TACGAGTTTCAGTGTGTTGC+TGG | - | chr8.2:461017-461036 | MS.gene95066:CDS | 45.0% | |
TGGAGTGATACAGAGGTCAA+TGG | + | chr8.2:460882-460901 | None:intergenic | 45.0% | |
TGGTATCCTTAACCAGTGTC+CGG | + | chr8.2:459043-459062 | None:intergenic | 45.0% | |
TTATGAGATCCCAGCATTCC+GGG | - | chr8.2:462126-462145 | MS.gene95066:intron | 45.0% | |
! | GGGATATAATGTTGGCCTGA+TGG | + | chr8.2:460927-460946 | None:intergenic | 45.0% |
!! | CTTTGAGGTTGAGAGCGATT+CGG | + | chr8.2:458590-458609 | None:intergenic | 45.0% |
!! | CATAAAAATAAAAATAAAAA+AGG | + | chr8.2:458440-458459 | None:intergenic | 5.0% |
!! | TCATAAAAATAAAAATATAA+AGG | + | chr8.2:460811-460830 | None:intergenic | 5.0% |
!!! | CTTTTTTATTTTTATTTTTA+TGG | - | chr8.2:458438-458457 | MS.gene95066:CDS | 5.0% |
ACCAGTTGTATTGCTGGCAG+AGG | - | chr8.2:460585-460604 | MS.gene95066:intron | 50.0% | |
AGGGAAGCAACCTACCTTTG+AGG | + | chr8.2:458605-458624 | None:intergenic | 50.0% | |
CAAAACCAACAGGGTTGAGC+TGG | + | chr8.2:459371-459390 | None:intergenic | 50.0% | |
CGAATCGCTCTCAACCTCAA+AGG | - | chr8.2:458588-458607 | MS.gene95066:intron | 50.0% | |
GAGAATCAGCCAGATGCAGT+AGG | - | chr8.2:462160-462179 | MS.gene95066:intron | 50.0% | |
GAGGTGGGGAAATCAAGAAG+TGG | + | chr8.2:460902-460921 | None:intergenic | 50.0% | |
GCATTGCTCGCAGTATTTGG+AGG | - | chr8.2:459508-459527 | MS.gene95066:intron | 50.0% | |
GGGAGCAAAGGATGTTGTTG+AGG | + | chr8.2:459542-459561 | None:intergenic | 50.0% | |
GGTATCCTTAACCAGTGTCC+GGG | + | chr8.2:459042-459061 | None:intergenic | 50.0% | |
TCCTCTGCCAGCAATACAAC+TGG | + | chr8.2:460589-460608 | None:intergenic | 50.0% | |
TCGCTCTCAACCTCAAAGGT+AGG | - | chr8.2:458592-458611 | MS.gene95066:intron | 50.0% | |
TTTCTCCAGCTCAACCCTGT+TGG | - | chr8.2:459363-459382 | MS.gene95066:intron | 50.0% | |
! | ACTGCATCTGGCTGATTCTC+TGG | + | chr8.2:462160-462179 | None:intergenic | 50.0% |
! | GATTCTCTGGCAAAGCATCC+CGG | + | chr8.2:462147-462166 | None:intergenic | 50.0% |
! | TAATGTTGGCCTGATGGTCG+AGG | + | chr8.2:460921-460940 | None:intergenic | 50.0% |
!! | TTTTTAGTATCCGGGGGCTC+CGG | - | chr8.2:459138-459157 | MS.gene95066:intron | 50.0% |
ATCCTTAACCAGTGTCCGGG+CGG | + | chr8.2:459039-459058 | None:intergenic | 55.0% | |
ATTTCCCCACCTCGACCATC+AGG | - | chr8.2:460909-460928 | MS.gene95066:intron | 55.0% | |
! | CACACTGGGAGGTATGCTAC+TGG | - | chr8.2:461104-461123 | MS.gene95066:intron | 55.0% |
! | GAGAGCGATTCGGACTCGAA+AGG | + | chr8.2:458580-458599 | None:intergenic | 55.0% |
! | GCAAAGCATCCCGGAATGCT+GGG | + | chr8.2:462138-462157 | None:intergenic | 55.0% |
GAAATGCTAACCGGAGCCCC+CGG | + | chr8.2:459151-459170 | None:intergenic | 60.0% | |
GCAGGGCAATCGACGAGAAC+AGG | + | chr8.2:459396-459415 | None:intergenic | 60.0% | |
TCCTTAACCAGTGTCCGGGC+GGG | + | chr8.2:459038-459057 | None:intergenic | 60.0% | |
TTGGCCTGATGGTCGAGGTG+GGG | + | chr8.2:460916-460935 | None:intergenic | 60.0% | |
! | GGCAAAGCATCCCGGAATGC+TGG | + | chr8.2:462139-462158 | None:intergenic | 60.0% |
! | GTTGGCCTGATGGTCGAGGT+GGG | + | chr8.2:460917-460936 | None:intergenic | 60.0% |
! | TGTTGGCCTGATGGTCGAGG+TGG | + | chr8.2:460918-460937 | None:intergenic | 60.0% |
CATGTTAACCCGTGCCCGCC+CGG | - | chr8.2:459021-459040 | MS.gene95066:intron | 65.0% | |
AACCAGTGTCCGGGCGGGCA+CGG | + | chr8.2:459033-459052 | None:intergenic | 70.0% | |
! | GCCCGCCCGGACACTGGTTA+AGG | - | chr8.2:459034-459053 | MS.gene95066:intron | 70.0% |
ACCAGTGTCCGGGCGGGCAC+GGG | + | chr8.2:459032-459051 | None:intergenic | 75.0% | |
! | ACCCGTGCCCGCCCGGACAC+TGG | - | chr8.2:459028-459047 | MS.gene95066:intron | 80.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr8.2 | gene | 458395 | 462186 | 458395 | ID=MS.gene95066 |
chr8.2 | mRNA | 458395 | 462186 | 458395 | ID=MS.gene95066.t1;Parent=MS.gene95066 |
chr8.2 | exon | 462184 | 462186 | 462184 | ID=MS.gene95066.t1.exon1;Parent=MS.gene95066.t1 |
chr8.2 | CDS | 462184 | 462186 | 462184 | ID=cds.MS.gene95066.t1;Parent=MS.gene95066.t1 |
chr8.2 | exon | 461972 | 462083 | 461972 | ID=MS.gene95066.t1.exon2;Parent=MS.gene95066.t1 |
chr8.2 | CDS | 461972 | 462083 | 461972 | ID=cds.MS.gene95066.t1;Parent=MS.gene95066.t1 |
chr8.2 | exon | 461310 | 461366 | 461310 | ID=MS.gene95066.t1.exon3;Parent=MS.gene95066.t1 |
chr8.2 | CDS | 461310 | 461366 | 461310 | ID=cds.MS.gene95066.t1;Parent=MS.gene95066.t1 |
chr8.2 | exon | 461135 | 461220 | 461135 | ID=MS.gene95066.t1.exon4;Parent=MS.gene95066.t1 |
chr8.2 | CDS | 461135 | 461220 | 461135 | ID=cds.MS.gene95066.t1;Parent=MS.gene95066.t1 |
chr8.2 | exon | 460986 | 461060 | 460986 | ID=MS.gene95066.t1.exon5;Parent=MS.gene95066.t1 |
chr8.2 | CDS | 460986 | 461060 | 460986 | ID=cds.MS.gene95066.t1;Parent=MS.gene95066.t1 |
chr8.2 | exon | 460738 | 460791 | 460738 | ID=MS.gene95066.t1.exon6;Parent=MS.gene95066.t1 |
chr8.2 | CDS | 460738 | 460791 | 460738 | ID=cds.MS.gene95066.t1;Parent=MS.gene95066.t1 |
chr8.2 | exon | 460517 | 460592 | 460517 | ID=MS.gene95066.t1.exon7;Parent=MS.gene95066.t1 |
chr8.2 | CDS | 460517 | 460592 | 460517 | ID=cds.MS.gene95066.t1;Parent=MS.gene95066.t1 |
chr8.2 | exon | 459439 | 459500 | 459439 | ID=MS.gene95066.t1.exon8;Parent=MS.gene95066.t1 |
chr8.2 | CDS | 459439 | 459500 | 459439 | ID=cds.MS.gene95066.t1;Parent=MS.gene95066.t1 |
chr8.2 | exon | 459076 | 459135 | 459076 | ID=MS.gene95066.t1.exon9;Parent=MS.gene95066.t1 |
chr8.2 | CDS | 459076 | 459135 | 459076 | ID=cds.MS.gene95066.t1;Parent=MS.gene95066.t1 |
chr8.2 | exon | 458395 | 458493 | 458395 | ID=MS.gene95066.t1.exon10;Parent=MS.gene95066.t1 |
chr8.2 | CDS | 458395 | 458493 | 458395 | ID=cds.MS.gene95066.t1;Parent=MS.gene95066.t1 |
Gene Sequence |
Protein sequence |