Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene77424.t1 | XP_003613754.1 | 92 | 225 | 18 | 0 | 1 | 225 | 1 | 225 | 1.50E-117 | 432.2 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene77424.t1 | Q9FUT0 | 44.0 | 218 | 119 | 2 | 7 | 221 | 8 | 225 | 1.2e-51 | 204.5 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene77424.t1 | G7KDY4 | 92.0 | 225 | 18 | 0 | 1 | 225 | 1 | 225 | 1.1e-117 | 432.2 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene012776 | MS.gene77424 | PPI |
| MS.gene012777 | MS.gene77424 | PPI |
| MS.gene85927 | MS.gene77424 | PPI |
| MS.gene43463 | MS.gene77424 | PPI |
| MS.gene070564 | MS.gene77424 | PPI |
| MS.gene042063 | MS.gene77424 | PPI |
| MS.gene95067 | MS.gene77424 | PPI |
| MS.gene55353 | MS.gene77424 | PPI |
| MS.gene77425 | MS.gene77424 | PPI |
| MS.gene78610 | MS.gene77424 | PPI |
| MS.gene95066 | MS.gene77424 | PPI |
| MS.gene53154 | MS.gene77424 | PPI |
| MS.gene042064 | MS.gene77424 | PPI |
| MS.gene032888 | MS.gene77424 | PPI |
| MS.gene032887 | MS.gene77424 | PPI |
| MS.gene43462 | MS.gene77424 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene77424.t1 | MTR_5g040430 | 92.000 | 225 | 18 | 0 | 1 | 225 | 1 | 225 | 4.80e-156 | 431 |
| MS.gene77424.t1 | MTR_4g019780 | 50.233 | 215 | 101 | 2 | 7 | 221 | 8 | 216 | 8.97e-68 | 207 |
| MS.gene77424.t1 | MTR_4g019790 | 43.243 | 222 | 118 | 4 | 1 | 221 | 1 | 215 | 4.95e-60 | 188 |
| MS.gene77424.t1 | MTR_7g065660 | 42.342 | 222 | 120 | 3 | 1 | 221 | 1 | 215 | 1.29e-57 | 182 |
| MS.gene77424.t1 | MTR_7g065720 | 42.152 | 223 | 120 | 3 | 1 | 221 | 1 | 216 | 2.00e-56 | 179 |
| MS.gene77424.t1 | MTR_7g065630 | 41.441 | 222 | 118 | 4 | 1 | 221 | 19 | 229 | 3.35e-56 | 179 |
| MS.gene77424.t1 | MTR_7g065600 | 41.892 | 222 | 121 | 3 | 1 | 221 | 1 | 215 | 4.77e-56 | 178 |
| MS.gene77424.t1 | MTR_3g099757 | 42.986 | 221 | 118 | 3 | 1 | 221 | 1 | 213 | 5.10e-56 | 178 |
| MS.gene77424.t1 | MTR_1g090070 | 40.909 | 220 | 121 | 4 | 7 | 223 | 9 | 222 | 6.53e-56 | 178 |
| MS.gene77424.t1 | MTR_7g065750 | 42.601 | 223 | 119 | 3 | 1 | 221 | 1 | 216 | 1.52e-55 | 177 |
| MS.gene77424.t1 | MTR_7g065590 | 42.130 | 216 | 117 | 3 | 7 | 221 | 7 | 215 | 2.28e-55 | 176 |
| MS.gene77424.t1 | MTR_1g090060 | 42.396 | 217 | 121 | 2 | 7 | 223 | 3 | 215 | 3.08e-55 | 176 |
| MS.gene77424.t1 | MTR_4g059730 | 44.037 | 218 | 116 | 5 | 7 | 223 | 4 | 216 | 5.82e-55 | 175 |
| MS.gene77424.t1 | MTR_7g065740 | 41.256 | 223 | 122 | 3 | 1 | 221 | 1 | 216 | 6.02e-55 | 175 |
| MS.gene77424.t1 | MTR_7g065230 | 43.243 | 222 | 113 | 4 | 1 | 221 | 1 | 210 | 3.52e-54 | 173 |
| MS.gene77424.t1 | MTR_8g087410 | 42.593 | 216 | 116 | 3 | 1 | 216 | 2 | 209 | 6.72e-54 | 172 |
| MS.gene77424.t1 | MTR_7g065290 | 41.892 | 222 | 121 | 3 | 1 | 221 | 1 | 215 | 1.06e-53 | 172 |
| MS.gene77424.t1 | MTR_7g065265 | 41.284 | 218 | 120 | 3 | 1 | 217 | 1 | 211 | 2.13e-53 | 171 |
| MS.gene77424.t1 | MTR_7g065270 | 40.826 | 218 | 121 | 3 | 1 | 217 | 1 | 211 | 3.33e-51 | 166 |
| MS.gene77424.t1 | MTR_8g087425 | 39.819 | 221 | 125 | 3 | 1 | 221 | 1 | 213 | 4.41e-51 | 165 |
| MS.gene77424.t1 | MTR_1g090100 | 40.826 | 218 | 125 | 2 | 6 | 223 | 1 | 214 | 7.18e-51 | 165 |
| MS.gene77424.t1 | MTR_2g070150 | 37.981 | 208 | 122 | 2 | 7 | 214 | 4 | 204 | 1.70e-50 | 163 |
| MS.gene77424.t1 | MTR_7g065260 | 40.566 | 212 | 120 | 2 | 1 | 212 | 8 | 213 | 1.82e-49 | 161 |
| MS.gene77424.t1 | MTR_2g070060 | 36.652 | 221 | 130 | 3 | 7 | 224 | 4 | 217 | 2.34e-49 | 160 |
| MS.gene77424.t1 | MTR_7g065640 | 40.541 | 222 | 106 | 4 | 1 | 221 | 1 | 197 | 3.11e-49 | 160 |
| MS.gene77424.t1 | MTR_6g080440 | 40.000 | 210 | 120 | 2 | 7 | 216 | 3 | 206 | 1.66e-48 | 159 |
| MS.gene77424.t1 | MTR_2g070180 | 36.364 | 209 | 126 | 2 | 7 | 215 | 4 | 205 | 1.86e-48 | 158 |
| MS.gene77424.t1 | MTR_2g070130 | 36.652 | 221 | 130 | 3 | 7 | 224 | 4 | 217 | 2.20e-48 | 158 |
| MS.gene77424.t1 | MTR_2g070120 | 40.476 | 210 | 116 | 4 | 7 | 215 | 4 | 205 | 3.83e-48 | 157 |
| MS.gene77424.t1 | MTR_1g090150 | 39.720 | 214 | 124 | 3 | 7 | 220 | 3 | 211 | 4.59e-48 | 157 |
| MS.gene77424.t1 | MTR_7g065710 | 38.942 | 208 | 115 | 4 | 8 | 214 | 5 | 201 | 9.27e-48 | 157 |
| MS.gene77424.t1 | MTR_1g090090 | 40.376 | 213 | 119 | 4 | 7 | 217 | 3 | 209 | 1.25e-47 | 156 |
| MS.gene77424.t1 | MTR_2g070200 | 37.198 | 207 | 122 | 3 | 7 | 212 | 4 | 203 | 1.49e-47 | 156 |
| MS.gene77424.t1 | MTR_7g065680 | 41.204 | 216 | 115 | 4 | 7 | 221 | 7 | 211 | 2.37e-46 | 153 |
| MS.gene77424.t1 | MTR_2g070140 | 37.129 | 202 | 120 | 2 | 21 | 222 | 2 | 196 | 3.65e-46 | 152 |
| MS.gene77424.t1 | MTR_8g061950 | 39.726 | 219 | 128 | 3 | 7 | 222 | 5 | 222 | 5.42e-46 | 152 |
| MS.gene77424.t1 | MTR_7g065700 | 43.062 | 209 | 107 | 5 | 7 | 214 | 7 | 204 | 7.98e-46 | 152 |
| MS.gene77424.t1 | MTR_1g115195 | 36.866 | 217 | 128 | 4 | 7 | 220 | 3 | 213 | 8.31e-45 | 149 |
| MS.gene77424.t1 | MTR_5g037380 | 36.279 | 215 | 133 | 3 | 5 | 216 | 3 | 216 | 1.28e-44 | 149 |
| MS.gene77424.t1 | MTR_2g070210 | 35.426 | 223 | 132 | 4 | 7 | 224 | 4 | 219 | 2.67e-44 | 148 |
| MS.gene77424.t1 | MTR_8g056940 | 37.438 | 203 | 120 | 2 | 7 | 209 | 4 | 199 | 7.67e-44 | 147 |
| MS.gene77424.t1 | MTR_2g070070 | 35.747 | 221 | 132 | 3 | 7 | 224 | 4 | 217 | 2.09e-43 | 145 |
| MS.gene77424.t1 | MTR_2g070110 | 37.104 | 221 | 128 | 5 | 7 | 224 | 4 | 216 | 3.84e-42 | 142 |
| MS.gene77424.t1 | MTR_5g076900 | 36.364 | 209 | 124 | 4 | 8 | 215 | 7 | 207 | 1.45e-40 | 138 |
| MS.gene77424.t1 | MTR_3g467420 | 33.010 | 206 | 130 | 3 | 8 | 212 | 10 | 208 | 3.49e-40 | 137 |
| MS.gene77424.t1 | MTR_3g467430 | 33.495 | 206 | 129 | 3 | 8 | 212 | 10 | 208 | 6.37e-39 | 134 |
| MS.gene77424.t1 | MTR_0186s0030 | 46.617 | 133 | 71 | 0 | 7 | 139 | 4 | 136 | 1.85e-38 | 130 |
| MS.gene77424.t1 | MTR_4g124130 | 39.674 | 184 | 103 | 3 | 7 | 187 | 4 | 182 | 8.98e-38 | 131 |
| MS.gene77424.t1 | MTR_2g072120 | 44.286 | 70 | 39 | 0 | 51 | 120 | 2 | 71 | 2.65e-20 | 82.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene77424.t1 | AT1G74590 | 42.273 | 220 | 126 | 1 | 1 | 220 | 1 | 219 | 2.58e-65 | 202 |
| MS.gene77424.t1 | AT5G62480 | 44.037 | 218 | 119 | 2 | 7 | 221 | 8 | 225 | 4.08e-65 | 202 |
| MS.gene77424.t1 | AT3G09270 | 42.922 | 219 | 119 | 2 | 8 | 225 | 7 | 220 | 9.26e-59 | 185 |
| MS.gene77424.t1 | AT2G29450 | 46.729 | 214 | 102 | 6 | 7 | 216 | 6 | 211 | 4.58e-55 | 176 |
| MS.gene77424.t1 | AT2G29490 | 39.207 | 227 | 129 | 4 | 1 | 225 | 1 | 220 | 2.65e-53 | 171 |
| MS.gene77424.t1 | AT2G29480 | 40.000 | 225 | 126 | 4 | 1 | 223 | 1 | 218 | 6.36e-53 | 170 |
| MS.gene77424.t1 | AT2G29440 | 41.743 | 218 | 118 | 5 | 7 | 222 | 6 | 216 | 2.92e-52 | 168 |
| MS.gene77424.t1 | AT2G29460 | 37.778 | 225 | 131 | 4 | 1 | 223 | 1 | 218 | 3.25e-52 | 168 |
| MS.gene77424.t1 | AT2G29420 | 38.889 | 216 | 124 | 3 | 7 | 221 | 9 | 217 | 3.13e-51 | 166 |
| MS.gene77424.t1 | AT2G29470 | 37.885 | 227 | 131 | 5 | 1 | 224 | 1 | 220 | 1.48e-48 | 159 |
| MS.gene77424.t1 | AT5G62480 | 37.615 | 218 | 107 | 3 | 7 | 221 | 8 | 199 | 5.52e-48 | 157 |
| MS.gene77424.t1 | AT5G62480 | 37.156 | 218 | 107 | 3 | 7 | 221 | 8 | 198 | 3.57e-47 | 155 |
| MS.gene77424.t1 | AT1G78380 | 34.762 | 210 | 130 | 2 | 7 | 216 | 4 | 206 | 1.20e-46 | 154 |
| MS.gene77424.t1 | AT1G78320 | 34.742 | 213 | 132 | 2 | 7 | 219 | 4 | 209 | 6.60e-46 | 152 |
| MS.gene77424.t1 | AT1G17180 | 36.190 | 210 | 127 | 2 | 7 | 216 | 4 | 206 | 1.51e-45 | 151 |
| MS.gene77424.t1 | AT1G10370 | 37.327 | 217 | 135 | 1 | 7 | 222 | 5 | 221 | 2.56e-45 | 150 |
| MS.gene77424.t1 | AT1G10360 | 38.318 | 214 | 129 | 3 | 5 | 216 | 3 | 215 | 4.21e-45 | 150 |
| MS.gene77424.t1 | AT1G78340 | 37.288 | 177 | 106 | 1 | 7 | 183 | 4 | 175 | 4.31e-44 | 147 |
| MS.gene77424.t1 | AT1G27130 | 37.089 | 213 | 130 | 3 | 8 | 217 | 7 | 218 | 7.05e-44 | 147 |
| MS.gene77424.t1 | AT1G17170 | 36.620 | 213 | 127 | 3 | 7 | 219 | 4 | 208 | 7.65e-44 | 147 |
| MS.gene77424.t1 | AT1G78370 | 32.057 | 209 | 135 | 2 | 9 | 217 | 6 | 207 | 1.64e-43 | 146 |
| MS.gene77424.t1 | AT1G53680 | 37.991 | 229 | 130 | 4 | 1 | 224 | 1 | 222 | 2.01e-43 | 145 |
| MS.gene77424.t1 | AT1G69930 | 36.190 | 210 | 132 | 2 | 8 | 216 | 13 | 221 | 8.42e-43 | 144 |
| MS.gene77424.t1 | AT3G43800 | 34.956 | 226 | 136 | 5 | 1 | 223 | 1 | 218 | 1.12e-42 | 144 |
| MS.gene77424.t1 | AT1G59670 | 37.220 | 223 | 125 | 6 | 1 | 215 | 1 | 216 | 1.71e-41 | 141 |
| MS.gene77424.t1 | AT1G69920 | 35.922 | 206 | 128 | 3 | 8 | 210 | 35 | 239 | 9.64e-41 | 140 |
| MS.gene77424.t1 | AT1G78360 | 34.112 | 214 | 133 | 4 | 7 | 219 | 4 | 210 | 2.15e-40 | 138 |
| MS.gene77424.t1 | AT1G17190 | 31.905 | 210 | 136 | 2 | 7 | 216 | 5 | 207 | 2.48e-39 | 135 |
| MS.gene77424.t1 | AT1G59700 | 37.900 | 219 | 131 | 5 | 1 | 216 | 1 | 217 | 3.89e-39 | 135 |
| MS.gene77424.t1 | AT1G27140 | 34.545 | 220 | 139 | 3 | 8 | 223 | 7 | 225 | 2.21e-38 | 133 |
| MS.gene77424.t1 | AT1G78320 | 29.108 | 213 | 117 | 3 | 7 | 219 | 4 | 182 | 1.71e-30 | 112 |
Find 62 sgRNAs with CRISPR-Local
Find 112 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTGAATACATCGATGAAATT+TGG | 0.107039 | 5.1:+30519921 | MS.gene77424:CDS |
| CTTCCTTTGTGCACAAGAAT+TGG | 0.239157 | 5.1:-30519872 | None:intergenic |
| AAGGTATACCCTTCACTTTA+AGG | 0.260399 | 5.1:-30519775 | None:intergenic |
| AGGATCCTCTGGCAGGAGTT+TGG | 0.311457 | 5.1:-30519954 | None:intergenic |
| TGAATACATCGATGAAATTT+GGG | 0.316149 | 5.1:+30519922 | MS.gene77424:CDS |
| TCACCAGAGGATGTTCCTTC+AGG | 0.317622 | 5.1:-30520923 | None:intergenic |
| TCCTCCTCCACATACTTATA+AGG | 0.330006 | 5.1:-30519794 | None:intergenic |
| AGGTATACCCTTCACTTTAA+GGG | 0.348321 | 5.1:-30519774 | None:intergenic |
| GGATCCTCTGGCAGGAGTTT+GGG | 0.351320 | 5.1:-30519953 | None:intergenic |
| AAGTTGTGTTGTTGGGAAAC+TGG | 0.352723 | 5.1:+30519720 | MS.gene77424:CDS |
| TTCTCTCATCTCCTCGAGAT+TGG | 0.355447 | 5.1:-30520680 | None:intergenic |
| GCGTTTCGCCATTGAAGAAT+TGG | 0.361541 | 5.1:-30520779 | None:intergenic |
| GTACAATCCTGTCCATAAAA+AGG | 0.369292 | 5.1:+30519847 | MS.gene77424:CDS |
| TTCCTTTGTGCACAAGAATT+GGG | 0.404729 | 5.1:-30519871 | None:intergenic |
| CGGACTTTAGCCCTTTGATA+AGG | 0.406040 | 5.1:-30519974 | None:intergenic |
| GCCCTTTGATAAGGATCCTC+TGG | 0.433066 | 5.1:-30519965 | None:intergenic |
| ATACTTGGGGTGTTTGAAGA+AGG | 0.446735 | 5.1:+30520729 | MS.gene77424:CDS |
| TTTAAGGGCTAGTTCTACTT+TGG | 0.446812 | 5.1:-30519759 | None:intergenic |
| AACAATTGAAGTTGTGTTGT+TGG | 0.447018 | 5.1:+30519712 | MS.gene77424:CDS |
| TACTTGGGGTGTTTGAAGAA+GGG | 0.448054 | 5.1:+30520730 | MS.gene77424:CDS |
| AAGCAATTCCAATTCTTCAA+TGG | 0.449699 | 5.1:+30520771 | MS.gene77424:CDS |
| CACCAGAGGATGTTCCTTCA+GGG | 0.461065 | 5.1:-30520922 | None:intergenic |
| ACAATTGAAGTTGTGTTGTT+GGG | 0.465774 | 5.1:+30519713 | MS.gene77424:CDS |
| TGCCCTGAAGGAACATCCTC+TGG | 0.468440 | 5.1:+30520920 | MS.gene77424:CDS |
| TGGAATATGCGGTAGCTACT+AGG | 0.468988 | 5.1:-30520660 | None:intergenic |
| TCAATTGTTTCTTCACCCAT+TGG | 0.469545 | 5.1:-30519698 | None:intergenic |
| GGCCTCTTGAAATGCTTCAT+AGG | 0.472305 | 5.1:-30520841 | None:intergenic |
| TACTTTCTGATCAAAGTAGT+TGG | 0.476161 | 5.1:-30520005 | None:intergenic |
| GAAGACATGGAAGAGATACT+TGG | 0.494020 | 5.1:+30520714 | MS.gene77424:CDS |
| ACTTGGGGTGTTTGAAGAAG+GGG | 0.504475 | 5.1:+30520731 | MS.gene77424:CDS |
| ACCTTATAAGTATGTGGAGG+AGG | 0.505083 | 5.1:+30519793 | MS.gene77424:CDS |
| GCCAGAGGATCCTTATCAAA+GGG | 0.523043 | 5.1:+30519964 | MS.gene77424:CDS |
| AGTTGTGTTGTTGGGAAACT+GGG | 0.527134 | 5.1:+30519721 | MS.gene77424:CDS |
| TTTGATAAGGATCCTCTGGC+AGG | 0.529287 | 5.1:-30519961 | None:intergenic |
| AAAGAAAGCTGCAGAAGACA+TGG | 0.529969 | 5.1:+30520701 | MS.gene77424:CDS |
| GGTGTTTGAAGAAGGGGTTA+AGG | 0.532545 | 5.1:+30520737 | MS.gene77424:CDS |
| AAGACATGGAAGAGATACTT+GGG | 0.539650 | 5.1:+30520715 | MS.gene77424:CDS |
| ACTTCCTCCTCATGACAAGT+TGG | 0.553330 | 5.1:+30520953 | MS.gene77424:CDS |
| CAATTCTTGTGCACAAAGGA+AGG | 0.554742 | 5.1:+30519873 | MS.gene77424:CDS |
| AGAACTAGCCCTTAAAGTGA+AGG | 0.562510 | 5.1:+30519766 | MS.gene77424:CDS |
| TCCTCCTCATGACAAGTTGG+TGG | 0.565432 | 5.1:+30520956 | MS.gene77424:CDS |
| CACCTATGAAGCATTTCAAG+AGG | 0.567937 | 5.1:+30520839 | MS.gene77424:CDS |
| GGGTATACCTTATAAGTATG+TGG | 0.568824 | 5.1:+30519787 | MS.gene77424:CDS |
| TGCCAGAGGATCCTTATCAA+AGG | 0.569024 | 5.1:+30519963 | MS.gene77424:CDS |
| GAAGGAACATCCTCTGGTGA+AGG | 0.571290 | 5.1:+30520926 | MS.gene77424:CDS |
| GAACTAGCCCTTAAAGTGAA+GGG | 0.575201 | 5.1:+30519767 | MS.gene77424:CDS |
| TTCTTCAATGGCGAAACGCT+AGG | 0.575394 | 5.1:+30520783 | MS.gene77424:CDS |
| GCCACCAACTTGTCATGAGG+AGG | 0.584492 | 5.1:-30520957 | None:intergenic |
| CGTGAAGACCTCTACATCAC+AGG | 0.591485 | 5.1:-30520862 | None:intergenic |
| CATGTGGGTGAATGCCCTGA+AGG | 0.604982 | 5.1:+30520908 | MS.gene77424:CDS |
| TCAAGAGGCCTGTGATGTAG+AGG | 0.605424 | 5.1:+30520854 | MS.gene77424:CDS |
| TTGGCCACCAACTTGTCATG+AGG | 0.608148 | 5.1:-30520960 | None:intergenic |
| CTCCTCGAGATTGGAATATG+CGG | 0.625651 | 5.1:-30520671 | None:intergenic |
| TTCATAGGTGCAAGAAGTCG+CGG | 0.631066 | 5.1:-30520826 | None:intergenic |
| GCTAGGACTCCTCGACATTG+TGG | 0.631683 | 5.1:+30520800 | MS.gene77424:CDS |
| GTCCCAATTCTTGTGCACAA+AGG | 0.633741 | 5.1:+30519869 | MS.gene77424:CDS |
| GGAAGTGTTTCCTTCACCAG+AGG | 0.655838 | 5.1:-30520936 | None:intergenic |
| TACCGCATATTCCAATCTCG+AGG | 0.668331 | 5.1:+30520669 | MS.gene77424:CDS |
| TAGTCCCAAACTCCTGCCAG+AGG | 0.676520 | 5.1:+30519949 | MS.gene77424:CDS |
| TATACCTTATAAGTATGTGG+AGG | 0.683481 | 5.1:+30519790 | MS.gene77424:CDS |
| TCGCGGCTACCACAATGTCG+AGG | 0.706634 | 5.1:-30520809 | None:intergenic |
| AGACATGGAAGAGATACTTG+GGG | 0.746381 | 5.1:+30520716 | MS.gene77424:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATTTAAATATAAGTAGAAAA+GGG | - | chr5.1:30520103-30520122 | None:intergenic | 10.0% |
| !! | TATTTAAATATAAGTAGAAA+AGG | - | chr5.1:30520104-30520123 | None:intergenic | 10.0% |
| !!! | TCCAATAATACTTTTTATTT+TGG | - | chr5.1:30520982-30521001 | None:intergenic | 15.0% |
| !! | ATTGGTAAGTTACTTAAAAT+TGG | - | chr5.1:30520368-30520387 | None:intergenic | 20.0% |
| !!! | AGATTCTAAAAACATTATCT+TGG | + | chr5.1:30520226-30520245 | MS.gene77424:intron | 20.0% |
| !!! | GCCAAAATAAAAAGTATTAT+TGG | + | chr5.1:30520978-30520997 | MS.gene77424:CDS | 20.0% |
| !!! | TGCTCTAACAAATATTTTAA+CGG | - | chr5.1:30520345-30520364 | None:intergenic | 20.0% |
| !!! | TGTCTTCTCTTAATAATTTT+AGG | - | chr5.1:30520266-30520285 | None:intergenic | 20.0% |
| ! | AAGTAACTTACCAATAGTTA+TGG | + | chr5.1:30520373-30520392 | MS.gene77424:intron | 25.0% |
| ! | AATAGTTATGGAGGTAAAAT+AGG | + | chr5.1:30520385-30520404 | MS.gene77424:intron | 25.0% |
| ! | TGAATACATCGATGAAATTT+GGG | + | chr5.1:30519922-30519941 | MS.gene77424:CDS | 25.0% |
| ! | TTGAATACATCGATGAAATT+TGG | + | chr5.1:30519921-30519940 | MS.gene77424:CDS | 25.0% |
| !! | TAAGTCTCTAAGGATAAAAT+TGG | - | chr5.1:30520598-30520617 | None:intergenic | 25.0% |
| !! | TATTTTACCTCCATAACTAT+TGG | - | chr5.1:30520386-30520405 | None:intergenic | 25.0% |
| !!! | AAAAATTTTGGCATCTTTTC+GGG | - | chr5.1:30520888-30520907 | None:intergenic | 25.0% |
| !!! | GAAAAATTTTGGCATCTTTT+CGG | - | chr5.1:30520889-30520908 | None:intergenic | 25.0% |
| !!! | GCTCTAACAAATATTTTAAC+GGG | - | chr5.1:30520344-30520363 | None:intergenic | 25.0% |
| AACAATTGAAGTTGTGTTGT+TGG | + | chr5.1:30519712-30519731 | MS.gene77424:CDS | 30.0% | |
| AAGCAATTCCAATTCTTCAA+TGG | + | chr5.1:30520771-30520790 | MS.gene77424:CDS | 30.0% | |
| TAACTTACCAATAGTTATGG+AGG | + | chr5.1:30520376-30520395 | MS.gene77424:intron | 30.0% | |
| TAAGGATAAAATTGGCTACT+AGG | - | chr5.1:30520590-30520609 | None:intergenic | 30.0% | |
| TACTTTCTGATCAAAGTAGT+TGG | - | chr5.1:30520008-30520027 | None:intergenic | 30.0% | |
| TATACCTTATAAGTATGTGG+AGG | + | chr5.1:30519790-30519809 | MS.gene77424:CDS | 30.0% | |
| TTATCCTTAGAGACTTAACT+TGG | + | chr5.1:30520601-30520620 | MS.gene77424:intron | 30.0% | |
| TTGTATCTAACCACTCAAAT+TGG | + | chr5.1:30520456-30520475 | MS.gene77424:intron | 30.0% | |
| ! | ACAATTGAAGTTGTGTTGTT+GGG | + | chr5.1:30519713-30519732 | MS.gene77424:CDS | 30.0% |
| ! | AGATGCCAAAATTTTTCATG+TGG | + | chr5.1:30520892-30520911 | MS.gene77424:CDS | 30.0% |
| ! | CATTATCTTGGTAGTCAATT+TGG | + | chr5.1:30520238-30520257 | MS.gene77424:intron | 30.0% |
| ! | GATGCCAAAATTTTTCATGT+GGG | + | chr5.1:30520893-30520912 | MS.gene77424:CDS | 30.0% |
| ! | TGTTTTCACTATAGTCATGA+AGG | - | chr5.1:30520316-30520335 | None:intergenic | 30.0% |
| ! | TTCACCCACATGAAAAATTT+TGG | - | chr5.1:30520900-30520919 | None:intergenic | 30.0% |
| AACACCAAGTTAAGTCTCTA+AGG | - | chr5.1:30520608-30520627 | None:intergenic | 35.0% | |
| AAGACATGGAAGAGATACTT+GGG | + | chr5.1:30520715-30520734 | MS.gene77424:CDS | 35.0% | |
| AAGGTATACCCTTCACTTTA+AGG | - | chr5.1:30519778-30519797 | None:intergenic | 35.0% | |
| AGGTATACCCTTCACTTTAA+GGG | - | chr5.1:30519777-30519796 | None:intergenic | 35.0% | |
| CTTTATCCACTAAAGGAACA+AGG | + | chr5.1:30520488-30520507 | MS.gene77424:intron | 35.0% | |
| GGGTATACCTTATAAGTATG+TGG | + | chr5.1:30519787-30519806 | MS.gene77424:CDS | 35.0% | |
| GTACAATCCTGTCCATAAAA+AGG | + | chr5.1:30519847-30519866 | MS.gene77424:CDS | 35.0% | |
| TTCCTTTGTGCACAAGAATT+GGG | - | chr5.1:30519874-30519893 | None:intergenic | 35.0% | |
| ! | CAAGAATTGGGACCTTTTTA+TGG | - | chr5.1:30519862-30519881 | None:intergenic | 35.0% |
| ! | TTCCTTTAGTGGATAAAGTG+AGG | - | chr5.1:30520486-30520505 | None:intergenic | 35.0% |
| !! | TTTAAGGGCTAGTTCTACTT+TGG | - | chr5.1:30519762-30519781 | None:intergenic | 35.0% |
| AAAGAAAGCTGCAGAAGACA+TGG | + | chr5.1:30520701-30520720 | MS.gene77424:CDS | 40.0% | |
| AACCTATTAGCTAGGTACGA+CGG | + | chr5.1:30520425-30520444 | MS.gene77424:intron | 40.0% | |
| ACCTTATAAGTATGTGGAGG+AGG | + | chr5.1:30519793-30519812 | MS.gene77424:CDS | 40.0% | |
| ACTAAAGGAACAAGGTGGAT+AGG | + | chr5.1:30520496-30520515 | MS.gene77424:intron | 40.0% | |
| AGAACTAGCCCTTAAAGTGA+AGG | + | chr5.1:30519766-30519785 | MS.gene77424:CDS | 40.0% | |
| AGACATGGAAGAGATACTTG+GGG | + | chr5.1:30520716-30520735 | MS.gene77424:CDS | 40.0% | |
| CAAAGTAGTTGGCCCAAAAA+CGG | - | chr5.1:30519997-30520016 | None:intergenic | 40.0% | |
| CAATTCTTGTGCACAAAGGA+AGG | + | chr5.1:30519873-30519892 | MS.gene77424:CDS | 40.0% | |
| CTAAAGGAACAAGGTGGATA+GGG | + | chr5.1:30520497-30520516 | MS.gene77424:intron | 40.0% | |
| CTTCCTTTGTGCACAAGAAT+TGG | - | chr5.1:30519875-30519894 | None:intergenic | 40.0% | |
| GAACTAGCCCTTAAAGTGAA+GGG | + | chr5.1:30519767-30519786 | MS.gene77424:CDS | 40.0% | |
| GAAGACATGGAAGAGATACT+TGG | + | chr5.1:30520714-30520733 | MS.gene77424:CDS | 40.0% | |
| TATCCACCTTGTTCCTTTAG+TGG | - | chr5.1:30520497-30520516 | None:intergenic | 40.0% | |
| TATCCACTAAAGGAACAAGG+TGG | + | chr5.1:30520491-30520510 | MS.gene77424:intron | 40.0% | |
| TCCTCCTCCACATACTTATA+AGG | - | chr5.1:30519797-30519816 | None:intergenic | 40.0% | |
| TGCCTCACTTTATCCACTAA+AGG | + | chr5.1:30520481-30520500 | MS.gene77424:intron | 40.0% | |
| ! | AAAGGGCTAAAGTCCGTTTT+TGG | + | chr5.1:30519981-30520000 | MS.gene77424:CDS | 40.0% |
| ! | AAGTTGTGTTGTTGGGAAAC+TGG | + | chr5.1:30519720-30519739 | MS.gene77424:CDS | 40.0% |
| ! | AGTTGTGTTGTTGGGAAACT+GGG | + | chr5.1:30519721-30519740 | MS.gene77424:CDS | 40.0% |
| ! | ATACTTGGGGTGTTTGAAGA+AGG | + | chr5.1:30520729-30520748 | MS.gene77424:CDS | 40.0% |
| ! | ATTGGGACCTTTTTATGGAC+AGG | - | chr5.1:30519857-30519876 | None:intergenic | 40.0% |
| ! | CACCTATGAAGCATTTCAAG+AGG | + | chr5.1:30520839-30520858 | MS.gene77424:CDS | 40.0% |
| ! | TACTTGGGGTGTTTGAAGAA+GGG | + | chr5.1:30520730-30520749 | MS.gene77424:CDS | 40.0% |
| !! | AAGGGCTAAAGTCCGTTTTT+GGG | + | chr5.1:30519982-30520001 | MS.gene77424:CDS | 40.0% |
| ACTTCCTCCTCATGACAAGT+TGG | + | chr5.1:30520953-30520972 | MS.gene77424:CDS | 45.0% | |
| AGCTAATAGGTTAAACCCGC+TGG | - | chr5.1:30520417-30520436 | None:intergenic | 45.0% | |
| ATCCGTCGTACCTAGCTAAT+AGG | - | chr5.1:30520430-30520449 | None:intergenic | 45.0% | |
| CGGACTTTAGCCCTTTGATA+AGG | - | chr5.1:30519977-30519996 | None:intergenic | 45.0% | |
| CTCCTCGAGATTGGAATATG+CGG | - | chr5.1:30520674-30520693 | None:intergenic | 45.0% | |
| GCCAGAGGATCCTTATCAAA+GGG | + | chr5.1:30519964-30519983 | MS.gene77424:CDS | 45.0% | |
| GCGGGTTTAACCTATTAGCT+AGG | + | chr5.1:30520417-30520436 | MS.gene77424:intron | 45.0% | |
| GCGTTTCGCCATTGAAGAAT+TGG | - | chr5.1:30520782-30520801 | None:intergenic | 45.0% | |
| GCTAATAGGTTAAACCCGCT+GGG | - | chr5.1:30520416-30520435 | None:intergenic | 45.0% | |
| GGCCTCTTGAAATGCTTCAT+AGG | - | chr5.1:30520844-30520863 | None:intergenic | 45.0% | |
| GGTGTTTGAAGAAGGGGTTA+AGG | + | chr5.1:30520737-30520756 | MS.gene77424:CDS | 45.0% | |
| GTCCCAATTCTTGTGCACAA+AGG | + | chr5.1:30519869-30519888 | MS.gene77424:CDS | 45.0% | |
| GTGAGGCAAACCAATTTGAG+TGG | - | chr5.1:30520469-30520488 | None:intergenic | 45.0% | |
| TACCGCATATTCCAATCTCG+AGG | + | chr5.1:30520669-30520688 | MS.gene77424:CDS | 45.0% | |
| TGCCAGAGGATCCTTATCAA+AGG | + | chr5.1:30519963-30519982 | MS.gene77424:CDS | 45.0% | |
| TGGAATATGCGGTAGCTACT+AGG | - | chr5.1:30520663-30520682 | None:intergenic | 45.0% | |
| TTCATAGGTGCAAGAAGTCG+CGG | - | chr5.1:30520829-30520848 | None:intergenic | 45.0% | |
| TTCTCTCATCTCCTCGAGAT+TGG | - | chr5.1:30520683-30520702 | None:intergenic | 45.0% | |
| TTCTTCAATGGCGAAACGCT+AGG | + | chr5.1:30520783-30520802 | MS.gene77424:CDS | 45.0% | |
| TTTGATAAGGATCCTCTGGC+AGG | - | chr5.1:30519964-30519983 | None:intergenic | 45.0% | |
| ! | ACTTGGGGTGTTTGAAGAAG+GGG | + | chr5.1:30520731-30520750 | MS.gene77424:CDS | 45.0% |
| ! | GTAAAATAGGTTGAGCCCAG+CGG | + | chr5.1:30520398-30520417 | MS.gene77424:intron | 45.0% |
| ! | TAAAATAGGTTGAGCCCAGC+GGG | + | chr5.1:30520399-30520418 | MS.gene77424:intron | 45.0% |
| !! | TAGCTAGGTACGACGGATTA+AGG | + | chr5.1:30520432-30520451 | MS.gene77424:intron | 45.0% |
| !!! | AATATAATTTGTTTTTTTTA+AGG | + | chr5.1:30520120-30520139 | MS.gene77424:intron | 5.0% |
| !!! | ATATAATTTGTTTTTTTTAA+GGG | + | chr5.1:30520121-30520140 | MS.gene77424:intron | 5.0% |
| AGGAACAAGGTGGATAGGGT+TGG | + | chr5.1:30520501-30520520 | MS.gene77424:intron | 50.0% | |
| CACCAGAGGATGTTCCTTCA+GGG | - | chr5.1:30520925-30520944 | None:intergenic | 50.0% | |
| CGTGAAGACCTCTACATCAC+AGG | - | chr5.1:30520865-30520884 | None:intergenic | 50.0% | |
| GAAGGAACATCCTCTGGTGA+AGG | + | chr5.1:30520926-30520945 | MS.gene77424:CDS | 50.0% | |
| GCCCTTTGATAAGGATCCTC+TGG | - | chr5.1:30519968-30519987 | None:intergenic | 50.0% | |
| TCAAGAGGCCTGTGATGTAG+AGG | + | chr5.1:30520854-30520873 | MS.gene77424:CDS | 50.0% | |
| TCACCAGAGGATGTTCCTTC+AGG | - | chr5.1:30520926-30520945 | None:intergenic | 50.0% | |
| TTGGCCACCAACTTGTCATG+AGG | - | chr5.1:30520963-30520982 | None:intergenic | 50.0% | |
| ! | TCCTCCTCATGACAAGTTGG+TGG | + | chr5.1:30520956-30520975 | MS.gene77424:CDS | 50.0% |
| !! | GGAAGTGTTTCCTTCACCAG+AGG | - | chr5.1:30520939-30520958 | None:intergenic | 50.0% |
| AGGATCCTCTGGCAGGAGTT+TGG | - | chr5.1:30519957-30519976 | None:intergenic | 55.0% | |
| CATGTGGGTGAATGCCCTGA+AGG | + | chr5.1:30520908-30520927 | MS.gene77424:CDS | 55.0% | |
| GCCACCAACTTGTCATGAGG+AGG | - | chr5.1:30520960-30520979 | None:intergenic | 55.0% | |
| GCTAGGACTCCTCGACATTG+TGG | + | chr5.1:30520800-30520819 | MS.gene77424:CDS | 55.0% | |
| GGATCCTCTGGCAGGAGTTT+GGG | - | chr5.1:30519956-30519975 | None:intergenic | 55.0% | |
| TAGTCCCAAACTCCTGCCAG+AGG | + | chr5.1:30519949-30519968 | MS.gene77424:CDS | 55.0% | |
| TGCCCTGAAGGAACATCCTC+TGG | + | chr5.1:30520920-30520939 | MS.gene77424:CDS | 55.0% | |
| !! | GGTGGATAGGGTTGGCTCAT+CGG | + | chr5.1:30520509-30520528 | MS.gene77424:intron | 55.0% |
| !! | GTGGATAGGGTTGGCTCATC+GGG | + | chr5.1:30520510-30520529 | MS.gene77424:intron | 55.0% |
| TCGCGGCTACCACAATGTCG+AGG | - | chr5.1:30520812-30520831 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.1 | gene | 30519701 | 30521007 | 30519701 | ID=MS.gene77424 |
| chr5.1 | mRNA | 30519701 | 30521007 | 30519701 | ID=MS.gene77424.t1;Parent=MS.gene77424 |
| chr5.1 | exon | 30519701 | 30520024 | 30519701 | ID=MS.gene77424.t1.exon1;Parent=MS.gene77424.t1 |
| chr5.1 | CDS | 30519701 | 30520024 | 30519701 | ID=cds.MS.gene77424.t1;Parent=MS.gene77424.t1 |
| chr5.1 | exon | 30520654 | 30521007 | 30520654 | ID=MS.gene77424.t1.exon2;Parent=MS.gene77424.t1 |
| chr5.1 | CDS | 30520654 | 30521007 | 30520654 | ID=cds.MS.gene77424.t1;Parent=MS.gene77424.t1 |
| Gene Sequence |
| Protein sequence |
