Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene77425.t1 | XP_003613754.1 | 77.6 | 223 | 39 | 1 | 1 | 212 | 1 | 223 | 2.30E-91 | 345.1 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene77425.t1 | Q9FUT0 | 41.7 | 228 | 112 | 4 | 1 | 210 | 1 | 225 | 3.0e-44 | 179.9 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene77425.t1 | G7KDY4 | 77.6 | 223 | 39 | 1 | 1 | 212 | 1 | 223 | 1.6e-91 | 345.1 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene77425 | MS.gene032888 | PPI |
| MS.gene77425 | MS.gene85927 | PPI |
| MS.gene77425 | MS.gene012777 | PPI |
| MS.gene77425 | MS.gene95066 | PPI |
| MS.gene77425 | MS.gene77424 | PPI |
| MS.gene042063 | MS.gene77425 | PPI |
| MS.gene042064 | MS.gene77425 | PPI |
| MS.gene77425 | MS.gene53154 | PPI |
| MS.gene77425 | MS.gene43463 | PPI |
| MS.gene77425 | MS.gene55353 | PPI |
| MS.gene78610 | MS.gene77425 | PPI |
| MS.gene032887 | MS.gene77425 | PPI |
| MS.gene77425 | MS.gene070564 | PPI |
| MS.gene43462 | MS.gene77425 | PPI |
| MS.gene012776 | MS.gene77425 | PPI |
| MS.gene77425 | MS.gene95067 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene77425.t1 | MTR_5g040430 | 77.578 | 223 | 39 | 1 | 1 | 212 | 1 | 223 | 2.08e-122 | 346 |
| MS.gene77425.t1 | MTR_4g019780 | 45.581 | 215 | 100 | 3 | 7 | 210 | 8 | 216 | 1.92e-55 | 176 |
| MS.gene77425.t1 | MTR_4g019790 | 38.739 | 222 | 117 | 4 | 1 | 210 | 1 | 215 | 1.38e-49 | 161 |
| MS.gene77425.t1 | MTR_4g059730 | 39.269 | 219 | 118 | 4 | 5 | 212 | 2 | 216 | 5.62e-47 | 154 |
| MS.gene77425.t1 | MTR_7g065590 | 38.889 | 216 | 113 | 3 | 7 | 210 | 7 | 215 | 1.39e-46 | 153 |
| MS.gene77425.t1 | MTR_7g065600 | 38.288 | 222 | 118 | 3 | 1 | 210 | 1 | 215 | 1.81e-45 | 150 |
| MS.gene77425.t1 | MTR_7g065660 | 37.557 | 221 | 119 | 4 | 1 | 209 | 1 | 214 | 3.68e-45 | 150 |
| MS.gene77425.t1 | MTR_7g065750 | 39.013 | 223 | 116 | 5 | 1 | 210 | 1 | 216 | 5.77e-45 | 149 |
| MS.gene77425.t1 | MTR_1g090060 | 38.073 | 218 | 120 | 4 | 6 | 212 | 2 | 215 | 4.33e-44 | 147 |
| MS.gene77425.t1 | MTR_7g065230 | 39.732 | 224 | 111 | 5 | 1 | 212 | 1 | 212 | 5.12e-44 | 147 |
| MS.gene77425.t1 | MTR_1g090070 | 36.199 | 221 | 125 | 4 | 4 | 212 | 6 | 222 | 1.62e-43 | 145 |
| MS.gene77425.t1 | MTR_7g065290 | 37.838 | 222 | 119 | 3 | 1 | 210 | 1 | 215 | 2.76e-43 | 145 |
| MS.gene77425.t1 | MTR_3g099757 | 38.785 | 214 | 114 | 3 | 8 | 210 | 6 | 213 | 8.62e-43 | 144 |
| MS.gene77425.t1 | MTR_7g065720 | 36.771 | 223 | 121 | 4 | 1 | 210 | 1 | 216 | 1.04e-42 | 143 |
| MS.gene77425.t1 | MTR_7g065740 | 35.874 | 223 | 123 | 5 | 1 | 210 | 1 | 216 | 1.52e-41 | 140 |
| MS.gene77425.t1 | MTR_7g065265 | 36.697 | 218 | 119 | 4 | 1 | 206 | 1 | 211 | 1.65e-41 | 140 |
| MS.gene77425.t1 | MTR_7g065630 | 36.937 | 222 | 117 | 4 | 1 | 210 | 19 | 229 | 2.33e-41 | 140 |
| MS.gene77425.t1 | MTR_6g080440 | 37.915 | 211 | 114 | 3 | 6 | 205 | 2 | 206 | 2.46e-40 | 137 |
| MS.gene77425.t1 | MTR_7g065270 | 36.036 | 222 | 123 | 4 | 1 | 210 | 1 | 215 | 6.40e-40 | 136 |
| MS.gene77425.t1 | MTR_1g090100 | 36.111 | 216 | 123 | 4 | 8 | 212 | 3 | 214 | 3.35e-39 | 134 |
| MS.gene77425.t1 | MTR_1g090090 | 37.736 | 212 | 117 | 4 | 6 | 206 | 2 | 209 | 4.38e-39 | 134 |
| MS.gene77425.t1 | MTR_8g087425 | 35.023 | 217 | 124 | 3 | 5 | 210 | 3 | 213 | 6.63e-39 | 134 |
| MS.gene77425.t1 | MTR_8g087410 | 37.264 | 212 | 116 | 3 | 5 | 205 | 4 | 209 | 9.72e-39 | 133 |
| MS.gene77425.t1 | MTR_7g065260 | 36.792 | 212 | 117 | 3 | 1 | 201 | 8 | 213 | 1.98e-38 | 132 |
| MS.gene77425.t1 | MTR_2g070150 | 34.762 | 210 | 119 | 3 | 5 | 203 | 2 | 204 | 2.02e-38 | 132 |
| MS.gene77425.t1 | MTR_1g090150 | 35.211 | 213 | 124 | 4 | 7 | 209 | 3 | 211 | 2.14e-37 | 130 |
| MS.gene77425.t1 | MTR_7g065640 | 35.586 | 222 | 106 | 5 | 1 | 210 | 1 | 197 | 2.59e-37 | 129 |
| MS.gene77425.t1 | MTR_1g115195 | 35.023 | 217 | 123 | 5 | 6 | 209 | 2 | 213 | 2.86e-37 | 129 |
| MS.gene77425.t1 | MTR_2g070200 | 36.019 | 211 | 112 | 5 | 5 | 201 | 2 | 203 | 5.05e-37 | 129 |
| MS.gene77425.t1 | MTR_2g070060 | 33.945 | 218 | 126 | 3 | 5 | 211 | 2 | 212 | 9.23e-37 | 128 |
| MS.gene77425.t1 | MTR_2g070130 | 34.597 | 211 | 120 | 4 | 5 | 204 | 2 | 205 | 2.38e-36 | 127 |
| MS.gene77425.t1 | MTR_2g070180 | 33.175 | 211 | 123 | 3 | 5 | 204 | 2 | 205 | 2.68e-36 | 127 |
| MS.gene77425.t1 | MTR_7g065710 | 34.135 | 208 | 114 | 4 | 8 | 203 | 5 | 201 | 5.72e-34 | 121 |
| MS.gene77425.t1 | MTR_2g070210 | 35.185 | 216 | 114 | 6 | 5 | 204 | 2 | 207 | 1.07e-33 | 120 |
| MS.gene77425.t1 | MTR_2g070120 | 34.906 | 212 | 118 | 5 | 5 | 204 | 2 | 205 | 1.81e-33 | 119 |
| MS.gene77425.t1 | MTR_2g070140 | 33.846 | 195 | 111 | 3 | 21 | 204 | 2 | 189 | 2.02e-33 | 119 |
| MS.gene77425.t1 | MTR_7g065680 | 36.574 | 216 | 114 | 4 | 7 | 210 | 7 | 211 | 2.08e-33 | 119 |
| MS.gene77425.t1 | MTR_2g070110 | 34.762 | 210 | 120 | 6 | 5 | 204 | 2 | 204 | 4.34e-33 | 119 |
| MS.gene77425.t1 | MTR_7g065700 | 37.073 | 205 | 106 | 5 | 7 | 199 | 7 | 200 | 1.69e-32 | 117 |
| MS.gene77425.t1 | MTR_2g070070 | 34.579 | 214 | 116 | 6 | 5 | 204 | 2 | 205 | 1.26e-31 | 115 |
| MS.gene77425.t1 | MTR_5g037380 | 34.234 | 222 | 117 | 7 | 5 | 205 | 3 | 216 | 2.35e-31 | 114 |
| MS.gene77425.t1 | MTR_8g056940 | 34.000 | 200 | 124 | 2 | 5 | 198 | 2 | 199 | 1.10e-30 | 112 |
| MS.gene77425.t1 | MTR_5g076900 | 32.381 | 210 | 122 | 5 | 7 | 204 | 6 | 207 | 3.36e-30 | 111 |
| MS.gene77425.t1 | MTR_8g061950 | 32.287 | 223 | 130 | 5 | 6 | 211 | 4 | 222 | 3.58e-30 | 111 |
| MS.gene77425.t1 | MTR_0186s0030 | 53.763 | 93 | 43 | 0 | 5 | 97 | 2 | 94 | 4.72e-29 | 106 |
| MS.gene77425.t1 | MTR_3g467420 | 33.175 | 211 | 116 | 7 | 6 | 201 | 8 | 208 | 4.92e-29 | 108 |
| MS.gene77425.t1 | MTR_3g467430 | 30.986 | 213 | 126 | 5 | 1 | 201 | 5 | 208 | 6.29e-29 | 108 |
| MS.gene77425.t1 | MTR_4g124130 | 54.839 | 93 | 41 | 1 | 6 | 97 | 3 | 95 | 1.38e-26 | 102 |
| MS.gene77425.t1 | MTR_2g072120 | 51.064 | 47 | 23 | 0 | 51 | 97 | 2 | 48 | 9.04e-15 | 67.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene77425.t1 | AT5G62480 | 42.105 | 228 | 111 | 5 | 1 | 210 | 1 | 225 | 5.35e-56 | 178 |
| MS.gene77425.t1 | AT1G74590 | 38.710 | 217 | 121 | 2 | 1 | 206 | 1 | 216 | 7.09e-54 | 172 |
| MS.gene77425.t1 | AT3G09270 | 38.839 | 224 | 119 | 4 | 1 | 212 | 1 | 218 | 1.95e-46 | 153 |
| MS.gene77425.t1 | AT2G29450 | 39.819 | 221 | 110 | 5 | 4 | 209 | 3 | 215 | 1.76e-45 | 150 |
| MS.gene77425.t1 | AT2G29440 | 38.565 | 223 | 113 | 6 | 4 | 211 | 3 | 216 | 2.88e-44 | 147 |
| MS.gene77425.t1 | AT2G29460 | 34.821 | 224 | 128 | 4 | 1 | 212 | 1 | 218 | 2.36e-43 | 145 |
| MS.gene77425.t1 | AT2G29490 | 35.426 | 223 | 126 | 4 | 1 | 211 | 1 | 217 | 1.78e-42 | 143 |
| MS.gene77425.t1 | AT2G29480 | 35.268 | 224 | 127 | 4 | 1 | 212 | 1 | 218 | 3.05e-41 | 140 |
| MS.gene77425.t1 | AT2G29420 | 35.238 | 210 | 119 | 3 | 4 | 202 | 6 | 209 | 1.75e-40 | 138 |
| MS.gene77425.t1 | AT5G62480 | 35.965 | 228 | 99 | 6 | 1 | 210 | 1 | 199 | 5.65e-39 | 134 |
| MS.gene77425.t1 | AT5G62480 | 35.526 | 228 | 99 | 6 | 1 | 210 | 1 | 198 | 3.47e-38 | 131 |
| MS.gene77425.t1 | AT2G29470 | 37.333 | 225 | 122 | 7 | 1 | 212 | 1 | 219 | 1.90e-37 | 130 |
| MS.gene77425.t1 | AT1G78380 | 33.019 | 212 | 124 | 3 | 5 | 205 | 2 | 206 | 1.03e-35 | 125 |
| MS.gene77425.t1 | AT1G17180 | 34.906 | 212 | 120 | 3 | 5 | 205 | 2 | 206 | 9.80e-35 | 123 |
| MS.gene77425.t1 | AT1G78320 | 34.722 | 216 | 120 | 5 | 7 | 211 | 4 | 209 | 2.28e-34 | 122 |
| MS.gene77425.t1 | AT1G10370 | 34.389 | 221 | 131 | 4 | 5 | 212 | 3 | 222 | 8.85e-34 | 120 |
| MS.gene77425.t1 | AT1G78340 | 35.196 | 179 | 100 | 2 | 5 | 172 | 2 | 175 | 1.38e-33 | 120 |
| MS.gene77425.t1 | AT1G69930 | 34.259 | 216 | 127 | 4 | 8 | 209 | 13 | 227 | 2.76e-33 | 119 |
| MS.gene77425.t1 | AT1G10360 | 34.112 | 214 | 127 | 4 | 5 | 205 | 3 | 215 | 1.26e-32 | 117 |
| MS.gene77425.t1 | AT1G17170 | 33.962 | 212 | 121 | 4 | 5 | 205 | 2 | 205 | 2.02e-32 | 117 |
| MS.gene77425.t1 | AT1G59670 | 35.616 | 219 | 125 | 6 | 4 | 208 | 3 | 219 | 2.44e-32 | 117 |
| MS.gene77425.t1 | AT1G78370 | 29.665 | 209 | 129 | 3 | 9 | 206 | 6 | 207 | 4.25e-32 | 116 |
| MS.gene77425.t1 | AT1G27130 | 31.336 | 217 | 134 | 4 | 4 | 206 | 3 | 218 | 1.38e-31 | 115 |
| MS.gene77425.t1 | AT1G53680 | 33.772 | 228 | 128 | 5 | 1 | 212 | 1 | 221 | 3.63e-30 | 111 |
| MS.gene77425.t1 | AT1G59700 | 36.652 | 221 | 127 | 5 | 4 | 211 | 3 | 223 | 4.90e-30 | 111 |
| MS.gene77425.t1 | AT3G43800 | 32.159 | 227 | 130 | 7 | 1 | 212 | 1 | 218 | 1.27e-29 | 110 |
| MS.gene77425.t1 | AT1G78360 | 31.776 | 214 | 127 | 4 | 5 | 206 | 2 | 208 | 4.59e-29 | 108 |
| MS.gene77425.t1 | AT1G17190 | 30.660 | 212 | 129 | 3 | 5 | 205 | 3 | 207 | 9.78e-29 | 107 |
| MS.gene77425.t1 | AT1G69920 | 30.189 | 212 | 133 | 4 | 2 | 199 | 29 | 239 | 1.10e-27 | 105 |
| MS.gene77425.t1 | AT1G27140 | 32.719 | 217 | 118 | 5 | 4 | 199 | 3 | 212 | 1.20e-27 | 105 |
| MS.gene77425.t1 | AT1G78320 | 29.167 | 216 | 105 | 6 | 7 | 211 | 4 | 182 | 4.34e-19 | 81.6 |
Find 55 sgRNAs with CRISPR-Local
Find 170 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTTAAGGGCTAGTTCTATTT+TGG | 0.203611 | 5.1:-30533015 | None:intergenic |
| TTGAATACATCGATGAGATT+TGG | 0.246469 | 5.1:+30533177 | MS.gene77425:CDS |
| CTTCCTTTGTGCAAGAGAAT+TGG | 0.277475 | 5.1:-30533128 | None:intergenic |
| AAGGTATGCCCTTCAGTTTA+AGG | 0.285977 | 5.1:-30533031 | None:intergenic |
| AAGTTGTGTTGTTGGGATAC+TGG | 0.319134 | 5.1:+30532976 | MS.gene77425:CDS |
| TCACCAGTAGATGTTCCTTC+AGG | 0.322164 | 5.1:-30534829 | None:intergenic |
| ACTTCCTCCTCATGACAAAT+TGG | 0.323192 | 5.1:+30534859 | MS.gene77425:CDS |
| GTGTTTCGCCGTCGAAGAAT+TGG | 0.346437 | 5.1:-30534685 | None:intergenic |
| TGAATACATCGATGAGATTT+GGG | 0.346681 | 5.1:+30533178 | MS.gene77425:CDS |
| TTCCTTTGTGCAAGAGAATT+GGG | 0.371798 | 5.1:-30533127 | None:intergenic |
| AGGATCCTCTGGCAACAGTT+TGG | 0.380589 | 5.1:-30533210 | None:intergenic |
| GGATCCTCTGGCAACAGTTT+GGG | 0.396541 | 5.1:-30533209 | None:intergenic |
| TTGAAAATGCGATAGGTACT+AGG | 0.416294 | 5.1:-30534566 | None:intergenic |
| AGGTATGCCCTTCAGTTTAA+GGG | 0.425909 | 5.1:-30533030 | None:intergenic |
| AGTTGTGTTGTTGGGATACT+GGG | 0.457322 | 5.1:+30532977 | MS.gene77425:CDS |
| GCCCTTTGATAAGGATCCTC+TGG | 0.462325 | 5.1:-30533221 | None:intergenic |
| GAAGAAAGAACGAAAGCTAT+AGG | 0.471887 | 5.1:+30534599 | MS.gene77425:CDS |
| ATACTTGGGGTGTTTGAAGA+AGG | 0.473234 | 5.1:+30534635 | MS.gene77425:CDS |
| CGAACTCTAGCCCTTTGATA+AGG | 0.473508 | 5.1:-30533230 | None:intergenic |
| CACCAGTAGATGTTCCTTCA+GGG | 0.479309 | 5.1:-30534828 | None:intergenic |
| TCACTAGTTTCCTCATCCAT+TGG | 0.481224 | 5.1:-30532954 | None:intergenic |
| TCTTCCTCCACATACTTGTA+AGG | 0.488405 | 5.1:-30533050 | None:intergenic |
| AACTAGTGAAGTTGTGTTGT+TGG | 0.493019 | 5.1:+30532968 | MS.gene77425:CDS |
| TGCCCTGAAGGAACATCTAC+TGG | 0.496298 | 5.1:+30534826 | MS.gene77425:CDS |
| TTTGAAGAAGGGGTCAAGGA+AGG | 0.500006 | 5.1:+30534647 | MS.gene77425:CDS |
| ACTAGTGAAGTTGTGTTGTT+GGG | 0.505894 | 5.1:+30532969 | MS.gene77425:CDS |
| GGTGAAGATCTCTATGTGTA+AGG | 0.513987 | 5.1:-30534768 | None:intergenic |
| ACCACAATGTCAAGGAGTCC+TGG | 0.519758 | 5.1:-30534707 | None:intergenic |
| GGAGACGTGGAAGACATACT+TGG | 0.522869 | 5.1:+30534620 | MS.gene77425:CDS |
| GGTGTTTGAAGAAGGGGTCA+AGG | 0.531277 | 5.1:+30534643 | MS.gene77425:CDS |
| GCCAGAGGATCCTTATCAAA+GGG | 0.533785 | 5.1:+30533220 | MS.gene77425:CDS |
| TACTTGGGGTGTTTGAAGAA+GGG | 0.536003 | 5.1:+30534636 | MS.gene77425:CDS |
| CGCCTTTGAAGCATTTCATG+AGG | 0.555517 | 5.1:+30534745 | MS.gene77425:CDS |
| GGGCATACCTTACAAGTATG+TGG | 0.561593 | 5.1:+30533043 | MS.gene77425:CDS |
| GAGACGTGGAAGACATACTT+GGG | 0.563262 | 5.1:+30534621 | MS.gene77425:CDS |
| TTCTTCGACGGCGAAACACC+AGG | 0.563917 | 5.1:+30534689 | MS.gene77425:CDS |
| AGAACTAGCCCTTAAACTGA+AGG | 0.563951 | 5.1:+30533022 | MS.gene77425:CDS |
| TTCATCATAACCAATGGATG+AGG | 0.566045 | 5.1:+30532944 | None:intergenic |
| ACTTGGGGTGTTTGAAGAAG+GGG | 0.568438 | 5.1:+30534637 | MS.gene77425:CDS |
| GAAGGAACATCTACTGGTGA+AGG | 0.571924 | 5.1:+30534832 | MS.gene77425:CDS |
| TCCTCCTCATGACAAATTGG+TGG | 0.572868 | 5.1:+30534862 | MS.gene77425:CDS |
| GCCACCAATTTGTCATGAGG+AGG | 0.575692 | 5.1:-30534863 | None:intergenic |
| GGCCTCATGAAATGCTTCAA+AGG | 0.582172 | 5.1:-30534747 | None:intergenic |
| TGCCAGAGGATCCTTATCAA+AGG | 0.585447 | 5.1:+30533219 | MS.gene77425:CDS |
| TTGGCCACCAATTTGTCATG+AGG | 0.586013 | 5.1:-30534866 | None:intergenic |
| GAACTAGCCCTTAAACTGAA+GGG | 0.588107 | 5.1:+30533023 | MS.gene77425:CDS |
| ACCAGGACTCCTTGACATTG+TGG | 0.589042 | 5.1:+30534706 | MS.gene77425:CDS |
| CATGTGGGTGAATGCCCTGA+AGG | 0.604982 | 5.1:+30534814 | MS.gene77425:CDS |
| GAGCAATTCCAATTCTTCGA+CGG | 0.607664 | 5.1:+30534677 | MS.gene77425:CDS |
| CTCCCAATTCTCTTGCACAA+AGG | 0.623171 | 5.1:+30533125 | MS.gene77425:CDS |
| AACGAAAGCTATAGGAGACG+TGG | 0.647606 | 5.1:+30534607 | MS.gene77425:CDS |
| TCGCAGCTACCACAATGTCA+AGG | 0.665866 | 5.1:-30534715 | None:intergenic |
| TAGTCCCAAACTGTTGCCAG+AGG | 0.679003 | 5.1:+30533205 | MS.gene77425:CDS |
| CATACCTTACAAGTATGTGG+AGG | 0.730124 | 5.1:+30533046 | MS.gene77425:CDS |
| AGACGTGGAAGACATACTTG+GGG | 0.775678 | 5.1:+30534622 | MS.gene77425:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AAAAATAAAACGTATTTTTA+TGG | + | chr5.1:30533919-30533938 | MS.gene77425:intron | 10.0% |
| !!! | AAAATAAAACGTATTTTTAT+GGG | + | chr5.1:30533920-30533939 | MS.gene77425:intron | 10.0% |
| !!! | TTTTTTTTCTTTTTAGTTAT+TGG | + | chr5.1:30533572-30533591 | MS.gene77425:intron | 10.0% |
| !! | TATCAAAATTGTAAAAACAT+TGG | + | chr5.1:30533443-30533462 | MS.gene77425:intron | 15.0% |
| !! | TTATTTCGTTTCTATTTAGA+CGG | + | chr5.1:30533521-30533540 | MS.gene77425:intron | 20.0% |
| !! | TTTACAAAAGAGATATCAAT+GGG | - | chr5.1:30534207-30534226 | None:intergenic | 20.0% |
| !! | TTTACTCAATAACAAAGAAT+AGG | - | chr5.1:30533372-30533391 | None:intergenic | 20.0% |
| ! | ATTTACCAAATTGAATGTGA+AGG | + | chr5.1:30533398-30533417 | MS.gene77425:intron | 25.0% |
| ! | CTTTACAAAAGAGATATCAA+TGG | - | chr5.1:30534208-30534227 | None:intergenic | 25.0% |
| ! | GTTTGTATAGAGTTTATTCT+TGG | + | chr5.1:30534062-30534081 | MS.gene77425:intron | 25.0% |
| ! | TTTACCAAATTGAATGTGAA+GGG | + | chr5.1:30533399-30533418 | MS.gene77425:intron | 25.0% |
| ! | TTTATAACTTCCATACACTT+TGG | + | chr5.1:30534362-30534381 | MS.gene77425:intron | 25.0% |
| ! | TTTATGTTGTTACGACAATT+CGG | - | chr5.1:30533902-30533921 | None:intergenic | 25.0% |
| !! | AAATTTGTTTATACCCAGTT+TGG | - | chr5.1:30534292-30534311 | None:intergenic | 25.0% |
| !!! | AGATTTGTTGCAATTTTATG+AGG | + | chr5.1:30533944-30533963 | MS.gene77425:intron | 25.0% |
| !!! | GATTTGTTGCAATTTTATGA+GGG | + | chr5.1:30533945-30533964 | MS.gene77425:intron | 25.0% |
| !!! | TCTTTTTAGTTATTGGCAAA+GGG | + | chr5.1:30533579-30533598 | MS.gene77425:intron | 25.0% |
| !!! | TTACAATATGCTTTTGAGTT+TGG | - | chr5.1:30534888-30534907 | None:intergenic | 25.0% |
| !!! | TTCTTTTTAGTTATTGGCAA+AGG | + | chr5.1:30533578-30533597 | MS.gene77425:intron | 25.0% |
| !!! | TTTTGATTCGACATTTTTCT+GGG | + | chr5.1:30533854-30533873 | MS.gene77425:intron | 25.0% |
| AAAGTTACTCATCATTACAG+TGG | + | chr5.1:30534224-30534243 | MS.gene77425:intron | 30.0% | |
| AATCAAAAGTCTCCAAAAAC+AGG | - | chr5.1:30533842-30533861 | None:intergenic | 30.0% | |
| ACCAATAAATACTTGATGTG+TGG | - | chr5.1:30534408-30534427 | None:intergenic | 30.0% | |
| ACTTTCGCAACAAAAACAAT+AGG | - | chr5.1:30533739-30533758 | None:intergenic | 30.0% | |
| AGATGTAAATCTTGAGATAG+AGG | + | chr5.1:30533999-30534018 | MS.gene77425:intron | 30.0% | |
| AGTAGTCAACACAAAAACTA+GGG | + | chr5.1:30534040-30534059 | MS.gene77425:intron | 30.0% | |
| ATGTAAATCTTGAGATAGAG+GGG | + | chr5.1:30534001-30534020 | MS.gene77425:intron | 30.0% | |
| CAAGATTTACATCTGATACA+AGG | - | chr5.1:30533993-30534012 | None:intergenic | 30.0% | |
| GATGTAAATCTTGAGATAGA+GGG | + | chr5.1:30534000-30534019 | MS.gene77425:intron | 30.0% | |
| TACTTTCTCATCAAAGTAGT+TGG | - | chr5.1:30533264-30533283 | None:intergenic | 30.0% | |
| TAGTAGTCAACACAAAAACT+AGG | + | chr5.1:30534039-30534058 | MS.gene77425:intron | 30.0% | |
| TCCACACATCAAGTATTTAT+TGG | + | chr5.1:30534404-30534423 | MS.gene77425:intron | 30.0% | |
| TGAATACATCGATGAGATTT+GGG | + | chr5.1:30533178-30533197 | MS.gene77425:CDS | 30.0% | |
| TTATGTTGTTACGACAATTC+GGG | - | chr5.1:30533901-30533920 | None:intergenic | 30.0% | |
| TTCACCCACATGAAAAATTT+CGG | - | chr5.1:30534806-30534825 | None:intergenic | 30.0% | |
| TTGAATACATCGATGAGATT+TGG | + | chr5.1:30533177-30533196 | MS.gene77425:CDS | 30.0% | |
| TTTGCTGAATCTGTCAAAAT+CGG | + | chr5.1:30533782-30533801 | MS.gene77425:intron | 30.0% | |
| ! | ATCGCATTTTCAAAACACAA+GGG | + | chr5.1:30534576-30534595 | MS.gene77425:CDS | 30.0% |
| ! | TATCGCATTTTCAAAACACA+AGG | + | chr5.1:30534575-30534594 | MS.gene77425:CDS | 30.0% |
| !! | CTTTTGATTCGACATTTTTC+TGG | + | chr5.1:30533853-30533872 | MS.gene77425:intron | 30.0% |
| !!! | TTCAACCCACCTATTTTAAT+TGG | + | chr5.1:30533633-30533652 | MS.gene77425:intron | 30.0% |
| !!! | TTGTGTTTTGAAAATGCGAT+AGG | - | chr5.1:30534576-30534595 | None:intergenic | 30.0% |
| !!! | TTTAAGGGCTAGTTCTATTT+TGG | - | chr5.1:30533018-30533037 | None:intergenic | 30.0% |
| AAATCCCTACAATGAAGAGA+AGG | + | chr5.1:30533482-30533501 | MS.gene77425:intron | 35.0% | |
| AACTAGTGAAGTTGTGTTGT+TGG | + | chr5.1:30532968-30532987 | MS.gene77425:CDS | 35.0% | |
| AACTTGTCTCAACACAAGTT+GGG | - | chr5.1:30533663-30533682 | None:intergenic | 35.0% | |
| AATCAAGCAACCAAAGTGTA+TGG | - | chr5.1:30534375-30534394 | None:intergenic | 35.0% | |
| AATCCTAATAGTGTTTCCCA+AGG | - | chr5.1:30534117-30534136 | None:intergenic | 35.0% | |
| ACAACCCTTCACATTCAATT+TGG | - | chr5.1:30533406-30533425 | None:intergenic | 35.0% | |
| ACTATTAGGATTGAGTCTCT+TGG | + | chr5.1:30534125-30534144 | MS.gene77425:intron | 35.0% | |
| AGGTATAGATGTGACAAAAC+AGG | - | chr5.1:30533719-30533738 | None:intergenic | 35.0% | |
| ATTCTTGGCAACAAACACTA+GGG | + | chr5.1:30534077-30534096 | MS.gene77425:intron | 35.0% | |
| CTCCAAAAACAGGCAAAATT+CGG | - | chr5.1:30533832-30533851 | None:intergenic | 35.0% | |
| GAAGAAAGAACGAAAGCTAT+AGG | + | chr5.1:30534599-30534618 | MS.gene77425:CDS | 35.0% | |
| GTTCAAAATTGACCTAGTCT+GGG | - | chr5.1:30534270-30534289 | None:intergenic | 35.0% | |
| TACTCATCATTACAGTGGAA+CGG | + | chr5.1:30534229-30534248 | MS.gene77425:intron | 35.0% | |
| TATGCCTTCTCTTCATTGTA+GGG | - | chr5.1:30533489-30533508 | None:intergenic | 35.0% | |
| TATTCTTGGCAACAAACACT+AGG | + | chr5.1:30534076-30534095 | MS.gene77425:intron | 35.0% | |
| TCCAAAAACAGGCAAAATTC+GGG | - | chr5.1:30533831-30533850 | None:intergenic | 35.0% | |
| TTATGCCTTCTCTTCATTGT+AGG | - | chr5.1:30533490-30533509 | None:intergenic | 35.0% | |
| TTCAAAATTGACCTAGTCTG+GGG | - | chr5.1:30534269-30534288 | None:intergenic | 35.0% | |
| TTCCTTTGTGCAAGAGAATT+GGG | - | chr5.1:30533130-30533149 | None:intergenic | 35.0% | |
| TTCTCTTCATTGTAGGGATT+TGG | - | chr5.1:30533483-30533502 | None:intergenic | 35.0% | |
| TTGAAAATGCGATAGGTACT+AGG | - | chr5.1:30534569-30534588 | None:intergenic | 35.0% | |
| TTGCTGAATCTGTCAAAATC+GGG | + | chr5.1:30533783-30533802 | MS.gene77425:intron | 35.0% | |
| ! | ACTAGTGAAGTTGTGTTGTT+GGG | + | chr5.1:30532969-30532988 | MS.gene77425:CDS | 35.0% |
| ! | AGGTCAATTTTGAACCAAAC+TGG | + | chr5.1:30534275-30534294 | MS.gene77425:intron | 35.0% |
| ! | ATTGGGAGCTTTTTATGAAC+AGG | - | chr5.1:30533113-30533132 | None:intergenic | 35.0% |
| ! | GAAAAATTTCGGCGTCTTTT+CGG | - | chr5.1:30534795-30534814 | None:intergenic | 35.0% |
| ! | GGTCAATTTTGAACCAAACT+GGG | + | chr5.1:30534276-30534295 | MS.gene77425:intron | 35.0% |
| ! | TACAATGAAGAGAAGGCATA+AGG | + | chr5.1:30533489-30533508 | MS.gene77425:intron | 35.0% |
| ! | TCGCATTTTCAAAACACAAG+GGG | + | chr5.1:30534577-30534596 | MS.gene77425:CDS | 35.0% |
| ! | TTGGGAGCTTTTTATGAACA+GGG | - | chr5.1:30533112-30533131 | None:intergenic | 35.0% |
| AAGGTATGCCCTTCAGTTTA+AGG | - | chr5.1:30533034-30533053 | None:intergenic | 40.0% | |
| ACTTCCTCCTCATGACAAAT+TGG | + | chr5.1:30534859-30534878 | MS.gene77425:CDS | 40.0% | |
| ACTTGTCTCAACACAAGTTG+GGG | - | chr5.1:30533662-30533681 | None:intergenic | 40.0% | |
| AGAACTAGCCCTTAAACTGA+AGG | + | chr5.1:30533022-30533041 | MS.gene77425:CDS | 40.0% | |
| AGGTATGCCCTTCAGTTTAA+GGG | - | chr5.1:30533033-30533052 | None:intergenic | 40.0% | |
| CAACTTGTCTCAACACAAGT+TGG | - | chr5.1:30533664-30533683 | None:intergenic | 40.0% | |
| CAACTTGTGTTGAGACAAGT+TGG | + | chr5.1:30533662-30533681 | MS.gene77425:intron | 40.0% | |
| CATACCTTACAAGTATGTGG+AGG | + | chr5.1:30533046-30533065 | MS.gene77425:CDS | 40.0% | |
| CTTCCTTTGTGCAAGAGAAT+TGG | - | chr5.1:30533131-30533150 | None:intergenic | 40.0% | |
| GAACTAGCCCTTAAACTGAA+GGG | + | chr5.1:30533023-30533042 | MS.gene77425:CDS | 40.0% | |
| GAGCAATTCCAATTCTTCGA+CGG | + | chr5.1:30534677-30534696 | MS.gene77425:CDS | 40.0% | |
| GGTGAAGATCTCTATGTGTA+AGG | - | chr5.1:30534771-30534790 | None:intergenic | 40.0% | |
| GGTTCAAAATTGACCTAGTC+TGG | - | chr5.1:30534271-30534290 | None:intergenic | 40.0% | |
| TCAAAATTGACCTAGTCTGG+GGG | - | chr5.1:30534268-30534287 | None:intergenic | 40.0% | |
| TCACCTTGGGAAACACTATT+AGG | + | chr5.1:30534111-30534130 | MS.gene77425:intron | 40.0% | |
| TCTTCCTCCACATACTTGTA+AGG | - | chr5.1:30533053-30533072 | None:intergenic | 40.0% | |
| TGCTGAATCTGTCAAAATCG+GGG | + | chr5.1:30533784-30533803 | MS.gene77425:intron | 40.0% | |
| ! | AAGTTGTGTTGTTGGGATAC+TGG | + | chr5.1:30532976-30532995 | MS.gene77425:CDS | 40.0% |
| ! | AGACGCCGAAATTTTTCATG+TGG | + | chr5.1:30534798-30534817 | MS.gene77425:CDS | 40.0% |
| ! | AGTTGTGTTGTTGGGATACT+GGG | + | chr5.1:30532977-30532996 | MS.gene77425:CDS | 40.0% |
| ! | ATACTTGGGGTGTTTGAAGA+AGG | + | chr5.1:30534635-30534654 | MS.gene77425:CDS | 40.0% |
| ! | ATGAAGAGAAGGCATAAGGT+CGG | + | chr5.1:30533493-30533512 | MS.gene77425:intron | 40.0% |
| ! | GACGCCGAAATTTTTCATGT+GGG | + | chr5.1:30534799-30534818 | MS.gene77425:CDS | 40.0% |
| ! | GGTTGAAGTTGATTCACCTT+GGG | + | chr5.1:30534098-30534117 | MS.gene77425:intron | 40.0% |
| ! | TACTTGGGGTGTTTGAAGAA+GGG | + | chr5.1:30534636-30534655 | MS.gene77425:CDS | 40.0% |
| !! | AAGGGCTAGAGTTCGTTTTT+AGG | + | chr5.1:30533238-30533257 | MS.gene77425:intron | 40.0% |
| !! | CAGGTAAACTTGTTCCGTTT+TGG | - | chr5.1:30533700-30533719 | None:intergenic | 40.0% |
| !! | CTCTCGCTGTTTTCTACTTT+TGG | + | chr5.1:30534333-30534352 | MS.gene77425:intron | 40.0% |
| AACGAAAGCTATAGGAGACG+TGG | + | chr5.1:30534607-30534626 | MS.gene77425:CDS | 45.0% | |
| AGACGTGGAAGACATACTTG+GGG | + | chr5.1:30534622-30534641 | MS.gene77425:CDS | 45.0% | |
| AGATAGAGGGGACTGAAACA+AGG | + | chr5.1:30534013-30534032 | MS.gene77425:intron | 45.0% | |
| CACCAGTAGATGTTCCTTCA+GGG | - | chr5.1:30534831-30534850 | None:intergenic | 45.0% | |
| CATCATTACAGTGGAACGGA+GGG | + | chr5.1:30534233-30534252 | MS.gene77425:intron | 45.0% | |
| CGAACTCTAGCCCTTTGATA+AGG | - | chr5.1:30533233-30533252 | None:intergenic | 45.0% | |
| CTCCCAATTCTCTTGCACAA+AGG | + | chr5.1:30533125-30533144 | MS.gene77425:CDS | 45.0% | |
| CTTGGTCACAGACAGAGATT+GGG | + | chr5.1:30534143-30534162 | MS.gene77425:intron | 45.0% | |
| GAAGGAACATCTACTGGTGA+AGG | + | chr5.1:30534832-30534851 | MS.gene77425:CDS | 45.0% | |
| GAGACGTGGAAGACATACTT+GGG | + | chr5.1:30534621-30534640 | MS.gene77425:CDS | 45.0% | |
| GATAGAGGGGACTGAAACAA+GGG | + | chr5.1:30534014-30534033 | MS.gene77425:intron | 45.0% | |
| GCCAGAGGATCCTTATCAAA+GGG | + | chr5.1:30533220-30533239 | MS.gene77425:CDS | 45.0% | |
| GGCCTCATGAAATGCTTCAA+AGG | - | chr5.1:30534750-30534769 | None:intergenic | 45.0% | |
| GGCGGCCAATTAAAATAGGT+GGG | - | chr5.1:30533641-30533660 | None:intergenic | 45.0% | |
| GGGCATACCTTACAAGTATG+TGG | + | chr5.1:30533043-30533062 | MS.gene77425:CDS | 45.0% | |
| TCACCAGTAGATGTTCCTTC+AGG | - | chr5.1:30534832-30534851 | None:intergenic | 45.0% | |
| TCATCATTACAGTGGAACGG+AGG | + | chr5.1:30534232-30534251 | MS.gene77425:intron | 45.0% | |
| TCCTCCTCATGACAAATTGG+TGG | + | chr5.1:30534862-30534881 | MS.gene77425:CDS | 45.0% | |
| TCTTGGTCACAGACAGAGAT+TGG | + | chr5.1:30534142-30534161 | MS.gene77425:intron | 45.0% | |
| TGCCAGAGGATCCTTATCAA+AGG | + | chr5.1:30533219-30533238 | MS.gene77425:CDS | 45.0% | |
| TTGGCCACCAATTTGTCATG+AGG | - | chr5.1:30534869-30534888 | None:intergenic | 45.0% | |
| TTGGGGCGGCCAATTAAAAT+AGG | - | chr5.1:30533645-30533664 | None:intergenic | 45.0% | |
| TTGGTCACAGACAGAGATTG+GGG | + | chr5.1:30534144-30534163 | MS.gene77425:intron | 45.0% | |
| TTTGAAGAAGGGGTCAAGGA+AGG | + | chr5.1:30534647-30534666 | MS.gene77425:CDS | 45.0% | |
| ! | AAATTTCGGCGTCTTTTCGG+AGG | - | chr5.1:30534792-30534811 | None:intergenic | 45.0% |
| ! | ACTTGGGGTGTTTGAAGAAG+GGG | + | chr5.1:30534637-30534656 | MS.gene77425:CDS | 45.0% |
| ! | CTTGTGTTGAGACAAGTTGG+TGG | + | chr5.1:30533665-30533684 | MS.gene77425:intron | 45.0% |
| ! | GCCCGAATTTTGCCTGTTTT+TGG | + | chr5.1:30533827-30533846 | MS.gene77425:intron | 45.0% |
| ! | GGGTTGAAGTTGATTCACCT+TGG | + | chr5.1:30534097-30534116 | MS.gene77425:intron | 45.0% |
| !! | CGCCTTTGAAGCATTTCATG+AGG | + | chr5.1:30534745-30534764 | MS.gene77425:CDS | 45.0% |
| !! | GGCTTTGGGTAGAATTAAGC+AGG | + | chr5.1:30534165-30534184 | MS.gene77425:intron | 45.0% |
| !!! | GGCTAGTTCTATTTTGGTGC+AGG | - | chr5.1:30533012-30533031 | None:intergenic | 45.0% |
| !!! | TATTTTGGTGCAGGAAGAGC+TGG | - | chr5.1:30533003-30533022 | None:intergenic | 45.0% |
| AAGGGCAAGTCAACCTGTCA+TGG | + | chr5.1:30533597-30533616 | MS.gene77425:intron | 50.0% | |
| ACAGACAGAGATTGGGGCTT+TGG | + | chr5.1:30534150-30534169 | MS.gene77425:intron | 50.0% | |
| ACCACAATGTCAAGGAGTCC+TGG | - | chr5.1:30534710-30534729 | None:intergenic | 50.0% | |
| ACCAGGACTCCTTGACATTG+TGG | + | chr5.1:30534706-30534725 | MS.gene77425:CDS | 50.0% | |
| ACTCTCAATCCACCCATGAC+AGG | - | chr5.1:30533613-30533632 | None:intergenic | 50.0% | |
| AGGATCCTCTGGCAACAGTT+TGG | - | chr5.1:30533213-30533232 | None:intergenic | 50.0% | |
| AGGGCAAGTCAACCTGTCAT+GGG | + | chr5.1:30533598-30533617 | MS.gene77425:intron | 50.0% | |
| CAGACAGAGATTGGGGCTTT+GGG | + | chr5.1:30534151-30534170 | MS.gene77425:intron | 50.0% | |
| GCCACCAATTTGTCATGAGG+AGG | - | chr5.1:30534866-30534885 | None:intergenic | 50.0% | |
| GCCCTTTGATAAGGATCCTC+TGG | - | chr5.1:30533224-30533243 | None:intergenic | 50.0% | |
| GGAGACGTGGAAGACATACT+TGG | + | chr5.1:30534620-30534639 | MS.gene77425:CDS | 50.0% | |
| GGATCCTCTGGCAACAGTTT+GGG | - | chr5.1:30533212-30533231 | None:intergenic | 50.0% | |
| GGGCGGCCAATTAAAATAGG+TGG | - | chr5.1:30533642-30533661 | None:intergenic | 50.0% | |
| GGTGTTTGAAGAAGGGGTCA+AGG | + | chr5.1:30534643-30534662 | MS.gene77425:CDS | 50.0% | |
| GTGTTTCGCCGTCGAAGAAT+TGG | - | chr5.1:30534688-30534707 | None:intergenic | 50.0% | |
| TAGTCCCAAACTGTTGCCAG+AGG | + | chr5.1:30533205-30533224 | MS.gene77425:CDS | 50.0% | |
| TCGCAGCTACCACAATGTCA+AGG | - | chr5.1:30534718-30534737 | None:intergenic | 50.0% | |
| TGCCCTGAAGGAACATCTAC+TGG | + | chr5.1:30534826-30534845 | MS.gene77425:CDS | 50.0% | |
| ! | GACATTTTTCTGGGCCCGAA+TGG | + | chr5.1:30533863-30533882 | MS.gene77425:intron | 50.0% |
| ! | TGTCTCAACACAAGTTGGGG+CGG | - | chr5.1:30533659-30533678 | None:intergenic | 50.0% |
| !!! | GGCGCTGATTTTGACCATTC+GGG | - | chr5.1:30533880-30533899 | None:intergenic | 50.0% |
| !!! | GGGCGCTGATTTTGACCATT+CGG | - | chr5.1:30533881-30533900 | None:intergenic | 50.0% |
| AACAGGCAAAATTCGGGCCC+AGG | - | chr5.1:30533825-30533844 | None:intergenic | 55.0% | |
| CATGTGGGTGAATGCCCTGA+AGG | + | chr5.1:30534814-30534833 | MS.gene77425:CDS | 55.0% | |
| GCAAGTCAACCTGTCATGGG+TGG | + | chr5.1:30533601-30533620 | MS.gene77425:intron | 55.0% | |
| TGTCAAAATCGGGGCCCGAT+TGG | + | chr5.1:30533793-30533812 | MS.gene77425:intron | 55.0% | |
| TTCTTCGACGGCGAAACACC+AGG | + | chr5.1:30534689-30534708 | MS.gene77425:CDS | 55.0% | |
| !! | AGACAAGTTGGTGGCGTGGT+GGG | + | chr5.1:30533674-30533693 | MS.gene77425:intron | 55.0% |
| !! | GTTGAGACAAGTTGGTGGCG+TGG | + | chr5.1:30533670-30533689 | MS.gene77425:intron | 55.0% |
| GGCCCAGGACAGAACCAATC+GGG | - | chr5.1:30533810-30533829 | None:intergenic | 60.0% | |
| GGGCCCAGGACAGAACCAAT+CGG | - | chr5.1:30533811-30533830 | None:intergenic | 60.0% | |
| !! | GAGACAAGTTGGTGGCGTGG+TGG | + | chr5.1:30533673-30533692 | MS.gene77425:intron | 60.0% |
| !! | GGCCCGATTGGTTCTGTCCT+GGG | + | chr5.1:30533805-30533824 | MS.gene77425:intron | 60.0% |
| GCTGCTCTCTCCCCCAGACT+AGG | + | chr5.1:30534255-30534274 | MS.gene77425:intron | 65.0% | |
| !! | GGGCCCGATTGGTTCTGTCC+TGG | + | chr5.1:30533804-30533823 | MS.gene77425:intron | 65.0% |
| !! | GGTGGCGTGGTGGGCCAAAA+CGG | + | chr5.1:30533683-30533702 | MS.gene77425:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.1 | gene | 30532957 | 30534907 | 30532957 | ID=MS.gene77425 |
| chr5.1 | mRNA | 30532957 | 30534907 | 30532957 | ID=MS.gene77425.t1;Parent=MS.gene77425 |
| chr5.1 | exon | 30532957 | 30533247 | 30532957 | ID=MS.gene77425.t1.exon1;Parent=MS.gene77425.t1 |
| chr5.1 | CDS | 30532957 | 30533247 | 30532957 | ID=cds.MS.gene77425.t1;Parent=MS.gene77425.t1 |
| chr5.1 | exon | 30534560 | 30534907 | 30534560 | ID=MS.gene77425.t1.exon2;Parent=MS.gene77425.t1 |
| chr5.1 | CDS | 30534560 | 30534907 | 30534560 | ID=cds.MS.gene77425.t1;Parent=MS.gene77425.t1 |
| Gene Sequence |
| Protein sequence |
