Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene042063.t1 | XP_013458694.1 | 93.9 | 197 | 10 | 1 | 1 | 197 | 3 | 197 | 2.70E-100 | 374.8 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene042063.t1 | P57108 | 68.4 | 190 | 59 | 1 | 8 | 197 | 4 | 192 | 6.4e-71 | 268.5 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene042063.t1 | I3T1N4 | 93.9 | 197 | 10 | 1 | 1 | 197 | 3 | 197 | 1.9e-100 | 374.8 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene042063.t1 | MTR_4g134380 | 93.909 | 197 | 10 | 1 | 1 | 197 | 3 | 197 | 6.40e-136 | 380 |
| MS.gene042063.t1 | MTR_4g134380 | 94.253 | 174 | 8 | 1 | 1 | 174 | 3 | 174 | 2.24e-120 | 339 |
| MS.gene042063.t1 | MTR_4g134370 | 83.000 | 200 | 34 | 0 | 1 | 200 | 1 | 200 | 3.39e-120 | 340 |
| MS.gene042063.t1 | MTR_4g134360 | 88.889 | 126 | 11 | 1 | 18 | 143 | 16 | 138 | 2.60e-77 | 228 |
| MS.gene042063.t1 | MTR_2g070150 | 32.164 | 171 | 97 | 5 | 15 | 181 | 4 | 159 | 1.47e-15 | 72.4 |
| MS.gene042063.t1 | MTR_2g070210 | 32.941 | 170 | 99 | 6 | 15 | 181 | 4 | 161 | 1.62e-15 | 72.8 |
| MS.gene042063.t1 | MTR_4g124130 | 32.941 | 170 | 102 | 5 | 13 | 181 | 2 | 160 | 1.09e-14 | 70.5 |
| MS.gene042063.t1 | MTR_2g070180 | 30.588 | 170 | 101 | 5 | 15 | 181 | 4 | 159 | 1.33e-14 | 70.1 |
| MS.gene042063.t1 | MTR_2g070200 | 31.765 | 170 | 100 | 4 | 15 | 181 | 4 | 160 | 5.43e-14 | 68.6 |
| MS.gene042063.t1 | MTR_3g064700 | 30.208 | 192 | 115 | 5 | 18 | 193 | 5 | 193 | 1.09e-13 | 67.4 |
| MS.gene042063.t1 | MTR_3g450930 | 31.953 | 169 | 100 | 5 | 25 | 184 | 11 | 173 | 3.16e-13 | 66.2 |
| MS.gene042063.t1 | MTR_5g090910 | 32.075 | 159 | 100 | 5 | 29 | 181 | 15 | 171 | 1.39e-12 | 64.7 |
| MS.gene042063.t1 | MTR_2g070140 | 32.484 | 157 | 87 | 5 | 29 | 181 | 2 | 143 | 2.52e-12 | 63.5 |
| MS.gene042063.t1 | MTR_1g088845 | 26.786 | 168 | 112 | 3 | 24 | 184 | 12 | 175 | 6.07e-12 | 62.8 |
| MS.gene042063.t1 | MTR_3g467420 | 31.214 | 173 | 100 | 6 | 13 | 181 | 7 | 164 | 6.83e-12 | 62.8 |
| MS.gene042063.t1 | MTR_3g450790 | 30.380 | 158 | 95 | 5 | 29 | 177 | 15 | 166 | 7.45e-12 | 62.4 |
| MS.gene042063.t1 | MTR_8g061950 | 30.952 | 168 | 96 | 7 | 18 | 177 | 8 | 163 | 7.83e-12 | 62.8 |
| MS.gene042063.t1 | MTR_0186s0030 | 36.170 | 94 | 56 | 2 | 14 | 106 | 3 | 93 | 8.12e-12 | 60.8 |
| MS.gene042063.t1 | MTR_2g070130 | 29.240 | 171 | 102 | 6 | 15 | 181 | 4 | 159 | 1.17e-11 | 62.0 |
| MS.gene042063.t1 | MTR_8g056940 | 28.070 | 171 | 106 | 5 | 14 | 181 | 3 | 159 | 2.16e-11 | 61.2 |
| MS.gene042063.t1 | MTR_5g090920 | 31.515 | 165 | 93 | 5 | 29 | 181 | 15 | 171 | 2.46e-11 | 61.2 |
| MS.gene042063.t1 | MTR_2g070120 | 29.240 | 171 | 104 | 6 | 14 | 181 | 3 | 159 | 2.97e-11 | 60.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene042063.t1 | AT2G02380 | 62.827 | 191 | 70 | 1 | 13 | 203 | 9 | 198 | 4.53e-83 | 246 |
| MS.gene042063.t1 | AT2G02390 | 63.243 | 185 | 67 | 1 | 13 | 197 | 6 | 189 | 3.41e-82 | 243 |
| MS.gene042063.t1 | AT2G02390 | 63.187 | 182 | 66 | 1 | 13 | 194 | 6 | 186 | 1.08e-79 | 238 |
| MS.gene042063.t1 | AT2G02390 | 60.847 | 189 | 66 | 2 | 13 | 194 | 6 | 193 | 6.52e-77 | 231 |
| MS.gene042063.t1 | AT2G02390 | 60.870 | 138 | 53 | 1 | 57 | 194 | 21 | 157 | 7.85e-56 | 176 |
| MS.gene042063.t1 | AT2G30870 | 33.951 | 162 | 92 | 4 | 25 | 177 | 11 | 166 | 1.18e-16 | 75.5 |
| MS.gene042063.t1 | AT2G30860 | 32.051 | 156 | 95 | 4 | 29 | 177 | 15 | 166 | 1.99e-13 | 67.0 |
| MS.gene042063.t1 | AT1G78320 | 34.783 | 115 | 70 | 3 | 13 | 125 | 2 | 113 | 2.14e-13 | 67.0 |
| MS.gene042063.t1 | AT2G30860 | 36.752 | 117 | 70 | 3 | 29 | 141 | 15 | 131 | 6.76e-13 | 64.3 |
| MS.gene042063.t1 | AT1G78340 | 28.235 | 170 | 103 | 5 | 15 | 180 | 4 | 158 | 1.51e-12 | 64.7 |
| MS.gene042063.t1 | AT3G09270 | 38.144 | 97 | 57 | 3 | 12 | 107 | 3 | 97 | 2.55e-11 | 61.2 |
| MS.gene042063.t1 | AT2G29450 | 38.542 | 96 | 54 | 3 | 12 | 106 | 3 | 94 | 4.07e-11 | 60.8 |
| MS.gene042063.t1 | AT2G29460 | 29.487 | 156 | 95 | 4 | 11 | 165 | 3 | 144 | 4.11e-11 | 60.8 |
| MS.gene042063.t1 | AT2G29490 | 32.000 | 125 | 80 | 3 | 11 | 134 | 3 | 123 | 5.65e-11 | 60.5 |
| MS.gene042063.t1 | AT1G17180 | 34.043 | 94 | 58 | 2 | 14 | 106 | 3 | 93 | 6.03e-11 | 60.1 |
| MS.gene042063.t1 | AT5G41210 | 27.869 | 183 | 110 | 5 | 15 | 183 | 3 | 177 | 7.60e-11 | 60.1 |
| MS.gene042063.t1 | AT1G74590 | 36.735 | 98 | 58 | 2 | 10 | 106 | 2 | 96 | 9.17e-11 | 59.7 |
Find 38 sgRNAs with CRISPR-Local
Find 216 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GCTTACATACCAGGAGATTT+AGG | 0.267068 | 8.3:+374910 | None:intergenic |
| ATTCACATGGTAGTATTCTA+TGG | 0.399560 | 8.3:-373245 | MS.gene042063:CDS |
| GCAGGGCCATCGACGAGAAC+AGG | 0.414471 | 8.3:+375347 | None:intergenic |
| CCAGGAGATTTAGGTTATGA+AGG | 0.442586 | 8.3:+374919 | None:intergenic |
| TTTGTTCCTGTTCTCGTCGA+TGG | 0.450370 | 8.3:-375353 | MS.gene042063:CDS |
| AGAACAGGAACAAAACCAAC+AGG | 0.454426 | 8.3:+375362 | None:intergenic |
| CTTTGAGGTTGAGAGCGATT+CGG | 0.455342 | 8.3:+376333 | None:intergenic |
| AGCTGATCCTGTATTCGTAT+TGG | 0.458748 | 8.3:-376379 | MS.gene042063:CDS |
| CAAAACCAACAGGGTTGAGC+TGG | 0.462938 | 8.3:+375372 | None:intergenic |
| AACTCCTCCAATACGAATAC+AGG | 0.470145 | 8.3:+376372 | None:intergenic |
| TGACTCTTTCGCTATTATCA+TGG | 0.474922 | 8.3:-375315 | MS.gene042063:intron |
| CAAAGCAGTTAATCTGTTGA+AGG | 0.481213 | 8.3:-375514 | MS.gene042063:CDS |
| TCCCTACTGATATTCACAAA+AGG | 0.482484 | 8.3:-375182 | MS.gene042063:CDS |
| AGGGAAGCGACCTACCTTTG+AGG | 0.504546 | 8.3:+376318 | None:intergenic |
| CAGGAGATTTAGGTTATGAA+GGG | 0.506586 | 8.3:+374920 | None:intergenic |
| TGTTTGCAGAAGTACATTGA+GGG | 0.510685 | 8.3:-374761 | MS.gene042063:intron |
| TGATCCTGTATTCGTATTGG+AGG | 0.521935 | 8.3:-376376 | MS.gene042063:CDS |
| GGGAGCAAAGGATGTTGTTG+AGG | 0.523337 | 8.3:+375201 | None:intergenic |
| AAGTACATTGAGGGAAAAGT+TGG | 0.525087 | 8.3:-374752 | MS.gene042063:CDS |
| TTTCTCCAGCTCAACCCTGT+TGG | 0.527912 | 8.3:-375377 | MS.gene042063:CDS |
| CTGTTTGCAGAAGTACATTG+AGG | 0.532003 | 8.3:-374762 | MS.gene042063:intron |
| GCATTGCTCGCAGTATTTGG+AGG | 0.532414 | 8.3:-375232 | MS.gene042063:intron |
| CCCTACTGATATTCACAAAA+GGG | 0.532979 | 8.3:-375181 | MS.gene042063:CDS |
| CCTTCATAACCTAAATCTCC+TGG | 0.540614 | 8.3:-374919 | MS.gene042063:intron |
| TTGATTACATTCTGGACCCA+TGG | 0.553283 | 8.3:+374713 | None:intergenic |
| CACACTGGGAGGTATGCTAC+TGG | 0.560769 | 8.3:-373638 | MS.gene042063:CDS |
| TGAATATCAGTAGGGAGCAA+AGG | 0.581413 | 8.3:+375189 | None:intergenic |
| GAGAGCGATTCGGACTCGAA+AGG | 0.587399 | 8.3:+376343 | None:intergenic |
| AAGGGAGAACAATCTCATCC+TGG | 0.593330 | 8.3:-375495 | MS.gene042063:intron |
| AGCTATTGAAAGAACACACT+GGG | 0.605194 | 8.3:-373652 | MS.gene042063:CDS |
| CGAATCGCTCTCAACCTCAA+AGG | 0.606649 | 8.3:-376332 | MS.gene042063:intron |
| AAAGCAGTTAATCTGTTGAA+GGG | 0.615542 | 8.3:-375513 | MS.gene042063:CDS |
| AGGAGATTTAGGTTATGAAG+GGG | 0.629231 | 8.3:+374921 | None:intergenic |
| AAGCTATTGAAAGAACACAC+TGG | 0.632858 | 8.3:-373653 | MS.gene042063:CDS |
| TTAGATGCAGCATGTAACTG+AGG | 0.670877 | 8.3:+373278 | None:intergenic |
| TATTGAAAGAACACACTGGG+AGG | 0.700146 | 8.3:-373649 | MS.gene042063:CDS |
| TAAGAGATTCAACATTCACA+TGG | 0.722671 | 8.3:-373258 | MS.gene042063:CDS |
| GAACAGGAACAAAACCAACA+GGG | 0.722903 | 8.3:+375363 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ACATTCAATTATAAAAATAT+TGG | + | chr8.3:376042-376061 | None:intergenic | 10.0% |
| !! | ACCAAAAATAAAATAAAAAT+AGG | - | chr8.3:375491-375510 | MS.gene042063:intron | 10.0% |
| !!! | AATTTTATTTTTTATTATCC+GGG | - | chr8.3:374107-374126 | MS.gene042063:intron | 10.0% |
| !!! | TAAAAAATTTTTTGTTTGTT+AGG | - | chr8.3:375948-375967 | MS.gene042063:intron | 10.0% |
| !!! | TCCTATTTTTATTTTATTTT+TGG | + | chr8.3:375495-375514 | None:intergenic | 10.0% |
| !! | AAATAGAATGAAATAATCAT+TGG | + | chr8.3:373859-373878 | None:intergenic | 15.0% |
| !! | GAAAAAAATTAAAGTTGTAT+TGG | + | chr8.3:373732-373751 | None:intergenic | 15.0% |
| !!! | ACAAGTTTTTGAAAATTAAT+AGG | - | chr8.3:376301-376320 | MS.gene042063:intron | 15.0% |
| !!! | ATTTTATTTTTTATTATCCG+GGG | - | chr8.3:374108-374127 | MS.gene042063:intron | 15.0% |
| !!! | CAAGTTTTTGAAAATTAATA+GGG | - | chr8.3:376302-376321 | MS.gene042063:intron | 15.0% |
| !! | AATAAAAATAGGAACATATG+AGG | - | chr8.3:375502-375521 | MS.gene042063:CDS | 20.0% |
| !! | AATAAAAATATAAAGGAGTG+AGG | + | chr8.3:375793-375812 | None:intergenic | 20.0% |
| !! | AATATAAGAGAATCCATTTA+CGG | + | chr8.3:374745-374764 | None:intergenic | 20.0% |
| !! | ACTTAATTACTTATAGTATG+TGG | + | chr8.3:374601-374620 | None:intergenic | 20.0% |
| !! | AGTATAGTTAGTAATATGTT+GGG | - | chr8.3:375832-375851 | MS.gene042063:intron | 20.0% |
| !! | AGTGAGTCTTAATTTATTTA+AGG | + | chr8.3:374151-374170 | None:intergenic | 20.0% |
| !! | ATAAATTATGACATAGGTTA+GGG | + | chr8.3:374285-374304 | None:intergenic | 20.0% |
| !! | GATACTATAAATTATGACAT+AGG | + | chr8.3:374291-374310 | None:intergenic | 20.0% |
| !! | GTGAGTCTTAATTTATTTAA+GGG | + | chr8.3:374150-374169 | None:intergenic | 20.0% |
| !! | TAATTGGAAGAATTTATTGA+TGG | - | chr8.3:373571-373590 | MS.gene042063:intron | 20.0% |
| !! | TACATTTCTTGATAAACATT+TGG | - | chr8.3:375431-375450 | MS.gene042063:intron | 20.0% |
| !! | TAGTATAGTTAGTAATATGT+TGG | - | chr8.3:375831-375850 | MS.gene042063:intron | 20.0% |
| !! | TATAAATTATGACATAGGTT+AGG | + | chr8.3:374286-374305 | None:intergenic | 20.0% |
| !! | TGTTGAATTGATGTTAAAAA+GGG | + | chr8.3:373434-373453 | None:intergenic | 20.0% |
| !!! | ATTGATTTGAATTTTGAACA+AGG | - | chr8.3:373289-373308 | MS.gene042063:CDS | 20.0% |
| !!! | ATTTTAACGACACTTAAAAA+AGG | - | chr8.3:373935-373954 | MS.gene042063:intron | 20.0% |
| !!! | GTCTTTTTCTTATAAAGTAA+GGG | - | chr8.3:373811-373830 | MS.gene042063:intron | 20.0% |
| !!! | TAAATTCTTTCTAAAGCTAT+TGG | + | chr8.3:375080-375099 | None:intergenic | 20.0% |
| !!! | TCTTTCTTGGAATATATTTT+TGG | - | chr8.3:376355-376374 | MS.gene042063:CDS | 20.0% |
| !!! | TGTCTTTTTCTTATAAAGTA+AGG | - | chr8.3:373810-373829 | MS.gene042063:intron | 20.0% |
| !!! | TGTTTTGCTGTTATTTAAAA+GGG | - | chr8.3:374875-374894 | MS.gene042063:intron | 20.0% |
| !!! | TTAGTAATAACTTCCTTTTT+TGG | + | chr8.3:374022-374041 | None:intergenic | 20.0% |
| !!! | TTTTAACGACACTTAAAAAA+GGG | - | chr8.3:373936-373955 | MS.gene042063:intron | 20.0% |
| !!! | TTTTATTTTTTATTATCCGG+GGG | - | chr8.3:374109-374128 | MS.gene042063:intron | 20.0% |
| ! | AAATTCAATCTTTCGTAAGT+TGG | - | chr8.3:375531-375550 | MS.gene042063:CDS | 25.0% |
| ! | AAGTAGAAGTTTCATCTAAA+TGG | - | chr8.3:375260-375279 | MS.gene042063:intron | 25.0% |
| ! | AAGTGCATGCAAAAAATAAT+TGG | - | chr8.3:373555-373574 | MS.gene042063:intron | 25.0% |
| ! | AATGAAACACATACGAAATT+TGG | - | chr8.3:375332-375351 | MS.gene042063:CDS | 25.0% |
| ! | ACACGTTTATTATCATTTGT+AGG | - | chr8.3:376412-376431 | MS.gene042063:CDS | 25.0% |
| ! | AGACATTGTAGATTTAGAAA+AGG | + | chr8.3:374452-374471 | None:intergenic | 25.0% |
| ! | ATATAAGAGAATCCATTTAC+GGG | + | chr8.3:374744-374763 | None:intergenic | 25.0% |
| ! | CAAATGATAATAAACGTGTT+AGG | + | chr8.3:376411-376430 | None:intergenic | 25.0% |
| ! | GAATGAATGAATGAATGTAA+AGG | + | chr8.3:374178-374197 | None:intergenic | 25.0% |
| ! | GTGTTGAATTGATGTTAAAA+AGG | + | chr8.3:373435-373454 | None:intergenic | 25.0% |
| ! | TAAATTATGACATAGGTTAG+GGG | + | chr8.3:374284-374303 | None:intergenic | 25.0% |
| ! | TTACATTCATTCATTCATTC+AGG | - | chr8.3:374178-374197 | MS.gene042063:intron | 25.0% |
| ! | TTTCTCTCTCTCAAAATTAT+AGG | - | chr8.3:374851-374870 | MS.gene042063:intron | 25.0% |
| !! | ATGATTTTGAACCTAACAAA+TGG | - | chr8.3:375621-375640 | MS.gene042063:intron | 25.0% |
| !! | ATTAAAACGAGAGTATAACA+AGG | - | chr8.3:373594-373613 | MS.gene042063:intron | 25.0% |
| !! | TGTTATTTAAAAGGGAGAAA+AGG | - | chr8.3:374883-374902 | MS.gene042063:intron | 25.0% |
| !! | TTCTTTCAATAGCTTTTCAA+GGG | + | chr8.3:376072-376091 | None:intergenic | 25.0% |
| !!! | AATTTTTTATCTGTGAAGCA+CGG | + | chr8.3:375937-375956 | None:intergenic | 25.0% |
| !!! | CTGTTTTGCTGTTATTTAAA+AGG | - | chr8.3:374874-374893 | MS.gene042063:intron | 25.0% |
| AAAAACTTGTGATCTGACTT+TGG | + | chr8.3:376291-376310 | None:intergenic | 30.0% | |
| AAACATTTGGACTTAATCTG+TGG | - | chr8.3:375444-375463 | MS.gene042063:intron | 30.0% | |
| AAACCTATCTCTAGTAAGTA+GGG | + | chr8.3:375975-375994 | None:intergenic | 30.0% | |
| AAAGAGTCAAAAATAACAGC+AGG | + | chr8.3:374404-374423 | None:intergenic | 30.0% | |
| AAAGATTCACTCCATTTGTT+AGG | + | chr8.3:375635-375654 | None:intergenic | 30.0% | |
| AAAGCAGTTAATCTGTTGAA+GGG | - | chr8.3:374217-374236 | MS.gene042063:intron | 30.0% | |
| AAGAGTCAAAAATAACAGCA+GGG | + | chr8.3:374403-374422 | None:intergenic | 30.0% | |
| ACGAAATTTGGCTATTACAA+TGG | - | chr8.3:375344-375363 | MS.gene042063:CDS | 30.0% | |
| ATTCACATGGTAGTATTCTA+TGG | - | chr8.3:376485-376504 | MS.gene042063:intron | 30.0% | |
| CGTTTATTATCATTTGTAGG+CGG | - | chr8.3:376415-376434 | MS.gene042063:CDS | 30.0% | |
| GACATAATTGACACTAATGA+TGG | + | chr8.3:375129-375148 | None:intergenic | 30.0% | |
| GTCCAGAATGTAATCAAAAA+AGG | - | chr8.3:375023-375042 | MS.gene042063:intron | 30.0% | |
| TAAGAGATTCAACATTCACA+TGG | - | chr8.3:376472-376491 | MS.gene042063:intron | 30.0% | |
| TATTTAAGGGAAATGCTAAC+CGG | + | chr8.3:374137-374156 | None:intergenic | 30.0% | |
| TGTTAGGTTCAAAATCATTG+AGG | + | chr8.3:375619-375638 | None:intergenic | 30.0% | |
| ! | ACATTGCTAGCCAAAAATTT+TGG | + | chr8.3:376182-376201 | None:intergenic | 30.0% |
| ! | CATTGCTAGCCAAAAATTTT+GGG | + | chr8.3:376181-376200 | None:intergenic | 30.0% |
| ! | CTCTAAAAAATCCACTATCT+CGG | - | chr8.3:373624-373643 | MS.gene042063:CDS | 30.0% |
| ! | GTTCTTTCAATAGCTTTTCA+AGG | + | chr8.3:376073-376092 | None:intergenic | 30.0% |
| ! | TGAAACTTCTACTTCTCTTT+TGG | + | chr8.3:375254-375273 | None:intergenic | 30.0% |
| ! | TTGGTTTCTCTTCTTATTTC+TGG | + | chr8.3:375476-375495 | None:intergenic | 30.0% |
| !! | ATATTTTTGTGCGGGAATAA+GGG | - | chr8.3:376515-376534 | MS.gene042063:intron | 30.0% |
| !! | CTTATATTGATTTCATCCAC+AGG | - | chr8.3:374757-374776 | MS.gene042063:intron | 30.0% |
| !! | TAACAAATGTTATTTCCACC+AGG | + | chr8.3:375684-375703 | None:intergenic | 30.0% |
| !! | TATATTTTTGTGCGGGAATA+AGG | - | chr8.3:376514-376533 | MS.gene042063:intron | 30.0% |
| !! | TGGAGTTAGTTCTGTTAAAA+GGG | - | chr8.3:376147-376166 | MS.gene042063:intron | 30.0% |
| !! | TTGGAGTTAGTTCTGTTAAA+AGG | - | chr8.3:376146-376165 | MS.gene042063:intron | 30.0% |
| !!! | AGCCTTTTTTGATTACATTC+TGG | + | chr8.3:375028-375047 | None:intergenic | 30.0% |
| !!! | ATTTTTTATCTGTGAAGCAC+GGG | + | chr8.3:375936-375955 | None:intergenic | 30.0% |
| AAAAAATCCACTATCTCGGT+TGG | - | chr8.3:373628-373647 | MS.gene042063:CDS | 35.0% | |
| AAAGTTGAAGAGGGTAAAGT+TGG | + | chr8.3:373757-373776 | None:intergenic | 35.0% | |
| AAGCTATTGAAAGAACACAC+TGG | - | chr8.3:376077-376096 | MS.gene042063:intron | 35.0% | |
| AAGTACATTGAGGGAAAAGT+TGG | - | chr8.3:374978-374997 | MS.gene042063:intron | 35.0% | |
| AATGGAGTGAATCTTTCGAT+TGG | - | chr8.3:375639-375658 | MS.gene042063:intron | 35.0% | |
| ACTGAAACTCGTATCTAGTA+AGG | + | chr8.3:375998-376017 | None:intergenic | 35.0% | |
| AGCATGACCCTTTCTTTAAT+TGG | + | chr8.3:373966-373985 | None:intergenic | 35.0% | |
| AGCTATTGAAAGAACACACT+GGG | - | chr8.3:376078-376097 | MS.gene042063:intron | 35.0% | |
| AGTTAGTAATATGTTGGGAG+TGG | - | chr8.3:375837-375856 | MS.gene042063:intron | 35.0% | |
| ATCTAAATGGCATGGAAATG+AGG | - | chr8.3:375273-375292 | MS.gene042063:intron | 35.0% | |
| CAAAATCATTGAGGTCCTAA+AGG | + | chr8.3:375610-375629 | None:intergenic | 35.0% | |
| CAAAGCAGTTAATCTGTTGA+AGG | - | chr8.3:374216-374235 | MS.gene042063:intron | 35.0% | |
| CACTAGATTTGCATCTTTCT+TGG | - | chr8.3:376342-376361 | MS.gene042063:CDS | 35.0% | |
| CATGGTATGTTGCTAATGAT+TGG | - | chr8.3:376127-376146 | MS.gene042063:intron | 35.0% | |
| CCCTACTGATATTCACAAAA+GGG | - | chr8.3:374549-374568 | MS.gene042063:intron | 35.0% | |
| CTGGTTAAGGATACCAAAAA+AGG | - | chr8.3:374006-374025 | MS.gene042063:intron | 35.0% | |
| CTGTAAATCCACAAAATGGT+TGG | + | chr8.3:374915-374934 | None:intergenic | 35.0% | |
| CTGTTAAAGTGATGACAAGT+TGG | - | chr8.3:374644-374663 | MS.gene042063:intron | 35.0% | |
| GAAACCTATCTCTAGTAAGT+AGG | + | chr8.3:375976-375995 | None:intergenic | 35.0% | |
| GAAGTTTCATCTAAATGGCA+TGG | - | chr8.3:375265-375284 | MS.gene042063:intron | 35.0% | |
| GGATTTACAGTGCATATGAT+AGG | - | chr8.3:374925-374944 | MS.gene042063:CDS | 35.0% | |
| GTAATCAAAAAAGGCTTCAC+AGG | - | chr8.3:375032-375051 | MS.gene042063:intron | 35.0% | |
| GTTAGTAATATGTTGGGAGT+GGG | - | chr8.3:375838-375857 | MS.gene042063:intron | 35.0% | |
| TCCAGAACATGAATTTGAAC+AGG | + | chr8.3:374701-374720 | None:intergenic | 35.0% | |
| TCCCTACTGATATTCACAAA+AGG | - | chr8.3:374548-374567 | MS.gene042063:intron | 35.0% | |
| TCCTCAATTTAACCCGTAAA+TGG | - | chr8.3:374729-374748 | MS.gene042063:CDS | 35.0% | |
| TCCTGTTCAAATTCATGTTC+TGG | - | chr8.3:374697-374716 | MS.gene042063:intron | 35.0% | |
| TGACTCTTTCGCTATTATCA+TGG | - | chr8.3:374415-374434 | MS.gene042063:intron | 35.0% | |
| TGCACTGTAAATCCACAAAA+TGG | + | chr8.3:374919-374938 | None:intergenic | 35.0% | |
| TGTGAGAGAAAAGTTGAAGA+GGG | + | chr8.3:373766-373785 | None:intergenic | 35.0% | |
| TTAGTAATATGTTGGGAGTG+GGG | - | chr8.3:375839-375858 | MS.gene042063:intron | 35.0% | |
| TTGAGAGAGAGAAAAAGAGA+TGG | + | chr8.3:374845-374864 | None:intergenic | 35.0% | |
| ! | AGGAGATTTAGGTTATGAAG+GGG | + | chr8.3:374812-374831 | None:intergenic | 35.0% |
| ! | ATTTGTTAGCTTGAGCATTC+AGG | - | chr8.3:375696-375715 | MS.gene042063:intron | 35.0% |
| ! | CAAAAGGGCTATCAATTTTC+AGG | - | chr8.3:374564-374583 | MS.gene042063:intron | 35.0% |
| ! | CAGGAGATTTAGGTTATGAA+GGG | + | chr8.3:374813-374832 | None:intergenic | 35.0% |
| ! | CCCTTTTGTGAATATCAGTA+GGG | + | chr8.3:374552-374571 | None:intergenic | 35.0% |
| ! | GTTTACTTTCTCGATCCTTT+TGG | - | chr8.3:375227-375246 | MS.gene042063:intron | 35.0% |
| ! | TACTTCTCTTTTGGACCAAA+AGG | + | chr8.3:375245-375264 | None:intergenic | 35.0% |
| ! | TCCATTTACGGGTTAAATTG+AGG | + | chr8.3:374733-374752 | None:intergenic | 35.0% |
| ! | TGAATCTTTCGATTGGTCAA+AGG | - | chr8.3:375646-375665 | MS.gene042063:intron | 35.0% |
| ! | TGTTTGCAGAAGTACATTGA+GGG | - | chr8.3:374969-374988 | MS.gene042063:intron | 35.0% |
| !! | AAAAAAGAGAGTATCGAACC+AGG | + | chr8.3:374256-374275 | None:intergenic | 35.0% |
| !! | AAGCGACACTCATTTTGAAA+CGG | - | chr8.3:373902-373921 | MS.gene042063:intron | 35.0% |
| !! | AAGCGACACTCATTTTGAAA+CGG | + | chr8.3:373921-373902 | None:intergenic | 35.0% |
| !! | AGGGAGTACCAATTAAAGAA+AGG | - | chr8.3:373955-373974 | MS.gene042063:intron | 35.0% |
| !! | GGGAGTACCAATTAAAGAAA+GGG | - | chr8.3:373956-373975 | MS.gene042063:intron | 35.0% |
| !! | GGTCTCGATATATTTTTGTG+CGG | - | chr8.3:376506-376525 | MS.gene042063:intron | 35.0% |
| !! | GTCTCGATATATTTTTGTGC+GGG | - | chr8.3:376507-376526 | MS.gene042063:intron | 35.0% |
| !! | TATTTTTGTGCGGGAATAAG+GGG | - | chr8.3:376516-376535 | MS.gene042063:intron | 35.0% |
| !! | TTCAAAATGAGTGTCGCTTT+AGG | + | chr8.3:373686-373667 | None:intergenic | 35.0% |
| AAAGAGATGGCTTACATACC+AGG | + | chr8.3:374832-374851 | None:intergenic | 40.0% | |
| AACTCCTCCAATACGAATAC+AGG | + | chr8.3:373361-373380 | None:intergenic | 40.0% | |
| AGAACAGGAACAAAACCAAC+AGG | + | chr8.3:374371-374390 | None:intergenic | 40.0% | |
| AGAGGATGTCTATCTCCTTT+AGG | - | chr8.3:375592-375611 | MS.gene042063:intron | 40.0% | |
| AGCTGATCCTGTATTCGTAT+TGG | - | chr8.3:373351-373370 | MS.gene042063:intron | 40.0% | |
| ATATCAACCAGTTGTCTTGC+TGG | - | chr8.3:375568-375587 | MS.gene042063:intron | 40.0% | |
| CCCTGATGAAAAACTTCCAT+GGG | - | chr8.3:375001-375020 | MS.gene042063:intron | 40.0% | |
| CCTTCATAACCTAAATCTCC+TGG | - | chr8.3:374811-374830 | MS.gene042063:intron | 40.0% | |
| GAACAGGAACAAAACCAACA+GGG | + | chr8.3:374370-374389 | None:intergenic | 40.0% | |
| GCTTACATACCAGGAGATTT+AGG | + | chr8.3:374823-374842 | None:intergenic | 40.0% | |
| GTGTGAGAGAAAAGTTGAAG+AGG | + | chr8.3:373767-373786 | None:intergenic | 40.0% | |
| TAAATGGCATGGAAATGAGG+TGG | - | chr8.3:375276-375295 | MS.gene042063:intron | 40.0% | |
| TATGACATAGGTTAGGGGTA+AGG | + | chr8.3:374279-374298 | None:intergenic | 40.0% | |
| TATGCATTGCTCGCAGTATT+TGG | - | chr8.3:374495-374514 | MS.gene042063:intron | 40.0% | |
| TATTGAAAGAACACACTGGG+AGG | - | chr8.3:376081-376100 | MS.gene042063:intron | 40.0% | |
| TCAATGCGATGAGAGCAATT+GGG | - | chr8.3:375390-375409 | MS.gene042063:intron | 40.0% | |
| TGAATATCAGTAGGGAGCAA+AGG | + | chr8.3:374544-374563 | None:intergenic | 40.0% | |
| TGATCCTGTATTCGTATTGG+AGG | - | chr8.3:373354-373373 | MS.gene042063:intron | 40.0% | |
| TTAGATGCAGCATGTAACTG+AGG | + | chr8.3:376455-376474 | None:intergenic | 40.0% | |
| TTGATTACATTCTGGACCCA+TGG | + | chr8.3:375020-375039 | None:intergenic | 40.0% | |
| ! | ACCCATGGAAGTTTTTCATC+AGG | + | chr8.3:375005-375024 | None:intergenic | 40.0% |
| ! | AGCCAAAAATTTTGGGCTAC+TGG | + | chr8.3:376174-376193 | None:intergenic | 40.0% |
| ! | CAAAGGTATACTAGTAGACC+TGG | - | chr8.3:375663-375682 | MS.gene042063:intron | 40.0% |
| ! | CCAGGAGATTTAGGTTATGA+AGG | + | chr8.3:374814-374833 | None:intergenic | 40.0% |
| ! | CCCATGGAAGTTTTTCATCA+GGG | + | chr8.3:375004-375023 | None:intergenic | 40.0% |
| ! | CTGTTTGCAGAAGTACATTG+AGG | - | chr8.3:374968-374987 | MS.gene042063:intron | 40.0% |
| ! | GCCCTTTTGTGAATATCAGT+AGG | + | chr8.3:374553-374572 | None:intergenic | 40.0% |
| ! | GGAACAAACCAACCATTTTG+TGG | - | chr8.3:374904-374923 | MS.gene042063:intron | 40.0% |
| ! | GTCCAGTAGCCCAAAATTTT+TGG | - | chr8.3:376169-376188 | MS.gene042063:intron | 40.0% |
| ! | TACGGGTTAAATTGAGGAAC+AGG | + | chr8.3:374727-374746 | None:intergenic | 40.0% |
| ! | TACTGGAGACGAAGTTTTCA+TGG | - | chr8.3:376109-376128 | MS.gene042063:intron | 40.0% |
| !!! | GACACTCATTTTGAAACGGA+GGG | - | chr8.3:373906-373925 | MS.gene042063:intron | 40.0% |
| !!! | GACACTCATTTTGAAACGGA+GGG | + | chr8.3:373925-373906 | None:intergenic | 40.0% |
| AAGGGAGAACAATCTCATCC+TGG | - | chr8.3:374235-374254 | MS.gene042063:intron | 45.0% | |
| AGGTATACTAGTAGACCTGG+TGG | - | chr8.3:375666-375685 | MS.gene042063:intron | 45.0% | |
| CAAGAAGTGGAGTGATACAG+AGG | + | chr8.3:375878-375897 | None:intergenic | 45.0% | |
| GAAACAATACTGACAGCCTG+TGG | + | chr8.3:374776-374795 | None:intergenic | 45.0% | |
| GCCCTGATGAAAAACTTCCA+TGG | - | chr8.3:375000-375019 | MS.gene042063:intron | 45.0% | |
| GGTCCCTACTTACTAGAGAT+AGG | - | chr8.3:375969-375988 | MS.gene042063:intron | 45.0% | |
| GTCAATGCGATGAGAGCAAT+TGG | - | chr8.3:375389-375408 | MS.gene042063:intron | 45.0% | |
| TACGAGTTTCAGTGTGTTGC+TGG | - | chr8.3:376005-376024 | MS.gene042063:intron | 45.0% | |
| TCTGTGAAGCACGGGATATA+AGG | + | chr8.3:375928-375947 | None:intergenic | 45.0% | |
| TGAAGCACGGGATATAAGGT+TGG | + | chr8.3:375924-375943 | None:intergenic | 45.0% | |
| TGGAGTGATACAGAGGTCAA+TGG | + | chr8.3:375871-375890 | None:intergenic | 45.0% | |
| TGGTATCCTTAACCAGTGTC+CGG | + | chr8.3:374002-374021 | None:intergenic | 45.0% | |
| TTTGTTCCTGTTCTCGTCGA+TGG | - | chr8.3:374377-374396 | MS.gene042063:intron | 45.0% | |
| !! | ATGAGTGTCGCTTTAGGCTT+TGG | + | chr8.3:373895-373914 | None:intergenic | 45.0% |
| !! | CTTTGAGGTTGAGAGCGATT+CGG | + | chr8.3:373400-373419 | None:intergenic | 45.0% |
| !! | TTTTTATTATCCGGGGGCAC+CGG | - | chr8.3:374115-374134 | MS.gene042063:intron | 45.0% |
| !!! | CGACACTCATTTTGAAACGG+AGG | - | chr8.3:373905-373924 | MS.gene042063:intron | 45.0% |
| !!! | CGACACTCATTTTGAAACGG+AGG | + | chr8.3:373924-373905 | None:intergenic | 45.0% |
| !! | CATAAAAATAAAAATAAAAA+AGG | + | chr8.3:373253-373272 | None:intergenic | 5.0% |
| !! | TCATAAAAATAAAAATATAA+AGG | + | chr8.3:375800-375819 | None:intergenic | 5.0% |
| !!! | CTTTTTTATTTTTATTTTTA+TGG | - | chr8.3:373251-373270 | MS.gene042063:CDS | 5.0% |
| !!! | TAATTTTATTTTTTATTATC+CGG | - | chr8.3:374106-374125 | MS.gene042063:intron | 5.0% |
| CAAAACCAACAGGGTTGAGC+TGG | + | chr8.3:374361-374380 | None:intergenic | 50.0% | |
| CGAATCGCTCTCAACCTCAA+AGG | - | chr8.3:373398-373417 | MS.gene042063:intron | 50.0% | |
| GAGGTGGGGAAATCAAGAAG+TGG | + | chr8.3:375891-375910 | None:intergenic | 50.0% | |
| GCATTGCTCGCAGTATTTGG+AGG | - | chr8.3:374498-374517 | MS.gene042063:intron | 50.0% | |
| GGGAGCAAAGGATGTTGTTG+AGG | + | chr8.3:374532-374551 | None:intergenic | 50.0% | |
| GGTATCCTTAACCAGTGTCC+GGG | + | chr8.3:374001-374020 | None:intergenic | 50.0% | |
| GTACACTCCAACCGAGATAG+TGG | + | chr8.3:373638-373657 | None:intergenic | 50.0% | |
| TCGCTCTCAACCTCAAAGGT+AGG | - | chr8.3:373402-373421 | MS.gene042063:intron | 50.0% | |
| TTTCTCCAGCTCAACCCTGT+TGG | - | chr8.3:374353-374372 | MS.gene042063:intron | 50.0% | |
| !! | GGGATATAAGGTTGGCCTGA+TGG | + | chr8.3:375916-375935 | None:intergenic | 50.0% |
| ACCAGTTGTCTTGCTGGCAG+AGG | - | chr8.3:375574-375593 | MS.gene042063:intron | 55.0% | |
| AGGGAAGCGACCTACCTTTG+AGG | + | chr8.3:373415-373434 | None:intergenic | 55.0% | |
| ATCCTTAACCAGTGTCCGGG+CGG | + | chr8.3:373998-374017 | None:intergenic | 55.0% | |
| ATTTCCCCACCTCGACCATC+AGG | - | chr8.3:375898-375917 | MS.gene042063:intron | 55.0% | |
| TCCTCTGCCAGCAAGACAAC+TGG | + | chr8.3:375578-375597 | None:intergenic | 55.0% | |
| ! | CACACTGGGAGGTATGCTAC+TGG | - | chr8.3:376092-376111 | MS.gene042063:intron | 55.0% |
| ! | GAGAGCGATTCGGACTCGAA+AGG | + | chr8.3:373390-373409 | None:intergenic | 55.0% |
| !! | TAAGGTTGGCCTGATGGTCG+AGG | + | chr8.3:375910-375929 | None:intergenic | 55.0% |
| GAAATGCTAACCGGTGCCCC+CGG | + | chr8.3:374128-374147 | None:intergenic | 60.0% | |
| TCCTTAACCAGTGTCCGGGC+GGG | + | chr8.3:373997-374016 | None:intergenic | 60.0% | |
| TTGGCCTGATGGTCGAGGTG+GGG | + | chr8.3:375905-375924 | None:intergenic | 60.0% | |
| ! | GTTGGCCTGATGGTCGAGGT+GGG | + | chr8.3:375906-375925 | None:intergenic | 60.0% |
| CATGCTAACCACTGCCCGCC+CGG | - | chr8.3:373980-373999 | MS.gene042063:intron | 65.0% | |
| GCAGGGCCATCGACGAGAAC+AGG | + | chr8.3:374386-374405 | None:intergenic | 65.0% | |
| !! | GGTTGGCCTGATGGTCGAGG+TGG | + | chr8.3:375907-375926 | None:intergenic | 65.0% |
| ! | GCCCGCCCGGACACTGGTTA+AGG | - | chr8.3:373993-374012 | MS.gene042063:intron | 70.0% |
| ACCACTGCCCGCCCGGACAC+TGG | - | chr8.3:373987-374006 | MS.gene042063:intron | 75.0% | |
| ACCAGTGTCCGGGCGGGCAG+TGG | + | chr8.3:373991-374010 | None:intergenic | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.3 | gene | 373208 | 376544 | 373208 | ID=MS.gene042063 |
| chr8.3 | mRNA | 373208 | 376544 | 373208 | ID=MS.gene042063.t1;Parent=MS.gene042063 |
| chr8.3 | exon | 376542 | 376544 | 376542 | ID=MS.gene042063.t1.exon1;Parent=MS.gene042063.t1 |
| chr8.3 | CDS | 376542 | 376544 | 376542 | ID=cds.MS.gene042063.t1;Parent=MS.gene042063.t1 |
| chr8.3 | exon | 376333 | 376441 | 376333 | ID=MS.gene042063.t1.exon2;Parent=MS.gene042063.t1 |
| chr8.3 | CDS | 376333 | 376441 | 376333 | ID=cds.MS.gene042063.t1;Parent=MS.gene042063.t1 |
| chr8.3 | exon | 375496 | 375552 | 375496 | ID=MS.gene042063.t1.exon3;Parent=MS.gene042063.t1 |
| chr8.3 | CDS | 375496 | 375552 | 375496 | ID=cds.MS.gene042063.t1;Parent=MS.gene042063.t1 |
| chr8.3 | exon | 375316 | 375401 | 375316 | ID=MS.gene042063.t1.exon4;Parent=MS.gene042063.t1 |
| chr8.3 | CDS | 375316 | 375401 | 375316 | ID=cds.MS.gene042063.t1;Parent=MS.gene042063.t1 |
| chr8.3 | exon | 375167 | 375241 | 375167 | ID=MS.gene042063.t1.exon5;Parent=MS.gene042063.t1 |
| chr8.3 | CDS | 375167 | 375241 | 375167 | ID=cds.MS.gene042063.t1;Parent=MS.gene042063.t1 |
| chr8.3 | exon | 374920 | 374973 | 374920 | ID=MS.gene042063.t1.exon6;Parent=MS.gene042063.t1 |
| chr8.3 | CDS | 374920 | 374973 | 374920 | ID=cds.MS.gene042063.t1;Parent=MS.gene042063.t1 |
| chr8.3 | exon | 374699 | 374774 | 374699 | ID=MS.gene042063.t1.exon7;Parent=MS.gene042063.t1 |
| chr8.3 | CDS | 374699 | 374774 | 374699 | ID=cds.MS.gene042063.t1;Parent=MS.gene042063.t1 |
| chr8.3 | exon | 373622 | 373683 | 373622 | ID=MS.gene042063.t1.exon8;Parent=MS.gene042063.t1 |
| chr8.3 | CDS | 373622 | 373683 | 373622 | ID=cds.MS.gene042063.t1;Parent=MS.gene042063.t1 |
| chr8.3 | exon | 373208 | 373318 | 373208 | ID=MS.gene042063.t1.exon9;Parent=MS.gene042063.t1 |
| chr8.3 | CDS | 373208 | 373318 | 373208 | ID=cds.MS.gene042063.t1;Parent=MS.gene042063.t1 |
| Gene Sequence |
| Protein sequence |
