AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene24445


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene24445.t1 MTR_1g018760 100.000 325 0 0 1 325 1 325 0.0 662
MS.gene24445.t1 MTR_3g102370 85.846 325 43 2 1 325 1 322 0.0 570
MS.gene24445.t1 MTR_1g094030 83.385 325 49 1 1 325 1 320 0.0 552
MS.gene24445.t1 MTR_4g109900 59.006 322 127 1 3 324 2 318 2.83e-132 379
MS.gene24445.t1 MTR_4g109920 59.752 323 124 2 3 324 2 319 3.34e-132 379
MS.gene24445.t1 MTR_8g031580 30.449 312 165 11 6 281 23 318 5.62e-23 98.2
MS.gene24445.t1 MTR_8g031580 30.449 312 165 11 6 281 23 318 1.38e-22 97.4
MS.gene24445.t1 MTR_3g008180 28.754 313 182 13 38 316 40 345 2.07e-18 85.1
MS.gene24445.t1 MTR_3g008180 28.226 248 149 10 93 316 4 246 5.10e-14 71.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene24445.t1 AT3G16150 84.615 325 50 0 1 325 1 325 0.0 566
MS.gene24445.t1 AT5G08100 57.492 327 121 4 1 324 1 312 3.01e-125 361
MS.gene24445.t1 AT5G08100 57.490 247 88 3 80 324 1 232 3.77e-94 279
MS.gene24445.t1 AT4G00590 27.187 320 179 8 6 285 15 320 1.65e-20 91.7

Find 93 sgRNAs with CRISPR-Local

Find 177 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AGACGATGCGGTGCCGTTTC+AGG 0.158496 1.1:+4186882 MS.gene24445:CDS
GGTTCATGGAGGTTGGAATT+TGG 0.195033 1.1:+4188409 MS.gene24445:CDS
ACTACGCACCCGACTGTTTC+AGG 0.214500 1.1:-4188036 None:intergenic
GTTCATGGAGGTTGGAATTT+GGG 0.262833 1.1:+4188410 MS.gene24445:CDS
ACTAAACGAGCCAGTGAAAT+TGG 0.271206 1.1:-4186924 None:intergenic
TTAACTGCAATGGCATGTTT+AGG 0.291387 1.1:+4188367 MS.gene24445:CDS
TTTGTAGGGTGTGGAGGTTC+TGG 0.300802 1.1:+4187261 MS.gene24445:intron
GGATCTGCCCTAACGGAAAA+AGG 0.305956 1.1:+4186819 MS.gene24445:CDS
AACGGATCCATTATTCAATT+CGG 0.328084 1.1:+4186791 MS.gene24445:CDS
AGTAAAGGAGAAGTTGCTTA+TGG 0.336064 1.1:+4188342 MS.gene24445:CDS
TAACTGCAATGGCATGTTTA+GGG 0.343986 1.1:+4188368 MS.gene24445:CDS
GTTATTGAAGGTGAGGGAAT+TGG 0.347604 1.1:+4186767 MS.gene24445:intron
CTTACTCGTGTTCTCAATCT+TGG 0.354252 1.1:+4186365 MS.gene24445:CDS
TGTGCTGCTGCCACGTCAAC+AGG 0.356128 1.1:+4188078 MS.gene24445:CDS
TGACGTTGAAGAGGGAGATT+AGG 0.362167 1.1:-4186323 None:intergenic
GTGTGCTGCAGTTTGATTAT+CGG 0.363877 1.1:+4187932 MS.gene24445:intron
ATTGCTGTGCATGGTGGTGC+TGG 0.397163 1.1:+4186293 MS.gene24445:CDS
AGGGGATGTGCTTCTGAGGA+TGG 0.401581 1.1:+4188387 MS.gene24445:CDS
ACGGATCCATTATTCAATTC+GGG 0.402987 1.1:+4186792 MS.gene24445:CDS
TGCTTCTGAGGATGGGTTCA+TGG 0.405891 1.1:+4188395 MS.gene24445:CDS
CCACGACCCGAATTGAATAA+TGG 0.409899 1.1:-4186798 None:intergenic
CTCATTGCTGTTTCTAGTAA+AGG 0.414337 1.1:+4188327 MS.gene24445:CDS
TACTGTGGTTAAACCTGAAA+CGG 0.417200 1.1:-4186895 None:intergenic
AACGTCGATGGCAGAAAGAT+TGG 0.417587 1.1:-4186405 None:intergenic
TTTGATTATCGGATTCCATC+TGG 0.417677 1.1:+4187943 MS.gene24445:CDS
ATTGGTGACTCACCTTTGAT+AGG 0.420480 1.1:+4188129 MS.gene24445:CDS
AGAGAGAAACATGGGTGGTT+GGG 0.423456 1.1:+4186268 None:intergenic
CCATTATTCAATTCGGGTCG+TGG 0.423817 1.1:+4186798 MS.gene24445:CDS
GGTTGGGCAATTGCTGTGCA+TGG 0.428468 1.1:+4186284 MS.gene24445:CDS
CACTTTGGCGCGAGAGGTGT+CGG 0.430026 1.1:+4188221 MS.gene24445:CDS
GGAAATGGAGGCTAGCATAA+TGG 0.434511 1.1:+4186848 MS.gene24445:CDS
GACGTTGAAGAGGGAGATTA+GGG 0.438575 1.1:-4186322 None:intergenic
ATTAAGAATCGTTTGGATGA+AGG 0.439748 1.1:+4188294 MS.gene24445:CDS
AAAGGAAGCAAATACAATCT+TGG 0.457652 1.1:+4187333 MS.gene24445:CDS
GGGGATGTGCTTCTGAGGAT+GGG 0.460240 1.1:+4188388 MS.gene24445:CDS
CAGCAGCACACCTTCCTTCA+CGG 0.468263 1.1:-4188065 None:intergenic
TCAGGTGCGTAGACACTCAT+TGG 0.468761 1.1:-4188018 None:intergenic
GACTCACCTTTGATAGGAGC+CGG 0.472240 1.1:+4188135 MS.gene24445:CDS
ACCTACGCGTGTAACCTTGC+TGG 0.480120 1.1:+4188159 MS.gene24445:CDS
GAGGATGGGTTCATGGAGGT+TGG 0.480884 1.1:+4188402 MS.gene24445:CDS
AGCGCCGTTAAAAGCAAGAT+AGG 0.481695 1.1:-4186967 None:intergenic
GGCGTCTCATGCACCGGTGA+AGG 0.482051 1.1:+4188180 MS.gene24445:CDS
GCTTATGGATTTAACTGCAA+TGG 0.484263 1.1:+4188357 MS.gene24445:CDS
TTCACTGGCTCGTTTAGTCA+TGG 0.486469 1.1:+4186929 MS.gene24445:CDS
AAGGTTACACGCGTAGGTCC+CGG 0.486913 1.1:-4188154 None:intergenic
GAAAGTCCAATGAAAATGAA+TGG 0.491181 1.1:+4187991 MS.gene24445:CDS
AACAGTCGGGTGCGTAGTTG+TGG 0.493878 1.1:+4188041 MS.gene24445:CDS
CGTTTGGATGAAGGATATGC+TGG 0.504298 1.1:+4188303 MS.gene24445:CDS
GTGATGGAATACAAAGGTCT+TGG 0.504451 1.1:+4188246 MS.gene24445:CDS
AACAAAATGATTGGTCGGAT+TGG 0.504757 1.1:+4188111 MS.gene24445:CDS
GAGAGAGAAACATGGGTGGT+TGG 0.505927 1.1:+4186267 None:intergenic
GGGCTAATGAACAAAATGAT+TGG 0.512413 1.1:+4188102 MS.gene24445:CDS
GGCTATCATACGTGGCACTT+TGG 0.516286 1.1:+4188206 MS.gene24445:CDS
GCGAGAGGTGTCGGCTGTGA+TGG 0.520900 1.1:+4188230 MS.gene24445:CDS
TATGATAGCCTCTCCTTCAC+CGG 0.531227 1.1:-4188193 None:intergenic
CTTCTTCTTGACGTTGAAGA+GGG 0.532258 1.1:-4186331 None:intergenic
GCTGCTGCCACGTCAACAGG+CGG 0.537860 1.1:+4188081 MS.gene24445:CDS
CTTGCTGGCGTCTCATGCAC+CGG 0.541455 1.1:+4188174 MS.gene24445:CDS
CATTAGCCCGCCTGTTGACG+TGG 0.549451 1.1:-4188088 None:intergenic
CTGCTGCCACGTCAACAGGC+GGG 0.561806 1.1:+4188082 MS.gene24445:CDS
TAATGAACAAAATGATTGGT+CGG 0.563124 1.1:+4188106 MS.gene24445:CDS
GAAGGTGAGGGAATTGGAAA+CGG 0.565330 1.1:+4186773 MS.gene24445:intron
CAATGTTGGTATGCTTAAGC+TGG 0.567336 1.1:+4187309 MS.gene24445:CDS
GCTTCTTCTTGACGTTGAAG+AGG 0.568251 1.1:-4186332 None:intergenic
GTTTAGGGGATGTGCTTCTG+AGG 0.570942 1.1:+4188383 MS.gene24445:CDS
ACGTGGCACTTTGGCGCGAG+AGG 0.574745 1.1:+4188215 MS.gene24445:CDS
TAGGTCCCGGCTCCTATCAA+AGG 0.574816 1.1:-4188141 None:intergenic
TTTATCACCGCTGACAATGT+TGG 0.576194 1.1:+4187295 MS.gene24445:CDS
TCTACGCACCTGAAACAGTC+GGG 0.579137 1.1:+4188028 MS.gene24445:CDS
GGGTCGTGGATCTGCCCTAA+CGG 0.579570 1.1:+4186812 MS.gene24445:CDS
CCACATGTTTCGTATCCAGA+TGG 0.581145 1.1:-4187958 None:intergenic
AACTGCAATGGCATGTTTAG+GGG 0.582673 1.1:+4188369 MS.gene24445:CDS
TCTTGGTCTTCAAGAAGCAG+TGG 0.595757 1.1:+4188263 MS.gene24445:CDS
CACAAGTTCAACAACGTCGA+TGG 0.596183 1.1:-4186417 None:intergenic
CATCGACGTTGTTGAACTTG+TGG 0.596402 1.1:+4186418 MS.gene24445:CDS
ATGGAGGCTAGCATAATGGA+TGG 0.598729 1.1:+4186852 MS.gene24445:CDS
CTCATGCACCGGTGAAGGAG+AGG 0.599796 1.1:+4188185 MS.gene24445:CDS
ACTCACCTTTGATAGGAGCC+GGG 0.601444 1.1:+4188136 MS.gene24445:CDS
TGCGTAGTTGTGGACCGTGA+AGG 0.611085 1.1:+4188051 MS.gene24445:CDS
GTCTACGCACCTGAAACAGT+CGG 0.614969 1.1:+4188027 MS.gene24445:CDS
TTGAGAGAGAGAAACATGGG+TGG 0.619739 1.1:+4186263 None:intergenic
AAAAGGAACGGTGGAAATGG+AGG 0.622339 1.1:+4186836 MS.gene24445:CDS
TGGTATGCTTAAGCTGGCAA+AGG 0.632666 1.1:+4187315 MS.gene24445:CDS
TTAAAAGCAAGATAGGAATG+AGG 0.636686 1.1:-4186960 None:intergenic
CGGTGCATGAGACGCCAGCA+AGG 0.648195 1.1:-4188173 None:intergenic
TGGGCAATTGCTGTGCATGG+TGG 0.661106 1.1:+4186287 MS.gene24445:CDS
TAGTTGTGGACCGTGAAGGA+AGG 0.661356 1.1:+4188055 MS.gene24445:CDS
CCATCTGGATACGAAACATG+TGG 0.678131 1.1:+4187958 MS.gene24445:CDS
GCCAGCAAGGTTACACGCGT+AGG 0.682958 1.1:-4188160 None:intergenic
GAAGGAGAGGCTATCATACG+TGG 0.687695 1.1:+4188198 MS.gene24445:CDS
AAGCATACCAACATTGTCAG+CGG 0.698333 1.1:-4187302 None:intergenic
TTCTGAGGATGGGTTCATGG+AGG 0.702330 1.1:+4188398 MS.gene24445:CDS
TCGGCTGTGATGGAATACAA+AGG 0.710713 1.1:+4188240 MS.gene24445:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATTATTATTAATTAATTAT+TGG + chr1.1:4187816-4187835 MS.gene24445:intron 0.0%
!!! ATCTTTATTTACAAAAAAAT+AGG + chr1.1:4187108-4187127 MS.gene24445:intron 10.0%
!!! GAAAAGATATTTTATTTTTT+GGG + chr1.1:4187130-4187149 MS.gene24445:intron 10.0%
!!! TTATTTATTTTTGTTATTGA+AGG + chr1.1:4186755-4186774 MS.gene24445:intron 10.0%
!! ATAAATTAATAATTCGTACA+CGG - chr1.1:4187206-4187225 None:intergenic 15.0%
!! TGAATTATTATTACTTTGTA+CGG + chr1.1:4187389-4187408 MS.gene24445:intron 15.0%
!!! AATATATTTTAACTATTCCA+AGG + chr1.1:4186706-4186725 MS.gene24445:intron 15.0%
!!! ATTATTTTACTTGTTTTTGT+AGG + chr1.1:4187246-4187265 MS.gene24445:intron 15.0%
!!! GGAAAAGATATTTTATTTTT+TGG + chr1.1:4187129-4187148 MS.gene24445:intron 15.0%
!!! GTAAAAATTATTTTCAGATT+GGG + chr1.1:4187644-4187663 MS.gene24445:intron 15.0%
!!! TTATTTTACTTGTTTTTGTA+GGG + chr1.1:4187247-4187266 MS.gene24445:intron 15.0%
!! AAAAAAAAATTGCAGAGATT+TGG - chr1.1:4187077-4187096 None:intergenic 20.0%
!! ATTATTATCAAATTCAACCA+TGG + chr1.1:4187362-4187381 MS.gene24445:intron 20.0%
!! CTATGAAATAATAATGGTAA+CGG - chr1.1:4186552-4186571 None:intergenic 20.0%
!! GAATTATTATTACTTTGTAC+GGG + chr1.1:4187390-4187409 MS.gene24445:intron 20.0%
!! TAATAATAATTCAAGATCCA+TGG - chr1.1:4187382-4187401 None:intergenic 20.0%
!! TGTTTATAAACAAAAGAGTT+TGG - chr1.1:4187760-4187779 None:intergenic 20.0%
!!! AGATATTTTATTTTTTGGGT+TGG + chr1.1:4187134-4187153 MS.gene24445:intron 20.0%
!!! GGTAAAAATTATTTTCAGAT+TGG + chr1.1:4187643-4187662 MS.gene24445:intron 20.0%
!!! TAGTTTTATTATGATTGTCA+CGG - chr1.1:4186591-4186610 None:intergenic 20.0%
! AGTAAAAAATCCAATTTCAC+TGG + chr1.1:4186914-4186933 MS.gene24445:CDS 25.0%
! TAATGAACAAAATGATTGGT+CGG + chr1.1:4188106-4188125 MS.gene24445:CDS 25.0%
! TATTGTATTCATGCATAGTT+TGG + chr1.1:4187689-4187708 MS.gene24445:intron 25.0%
! TCACATATTGAAATAAACGT+GGG + chr1.1:4187622-4187641 MS.gene24445:intron 25.0%
! TGGTAGCTATGAAATAATAA+TGG - chr1.1:4186558-4186577 None:intergenic 25.0%
! TTCACATATTGAAATAAACG+TGG + chr1.1:4187621-4187640 MS.gene24445:intron 25.0%
! TTTAACTATTCCAAGGAATT+TGG + chr1.1:4186713-4186732 MS.gene24445:intron 25.0%
!! TAAAGAGAAAGTGTACTAAT+TGG - chr1.1:4187716-4187735 None:intergenic 25.0%
!! TTTTGTCATTAAGAATCGTT+TGG + chr1.1:4188287-4188306 MS.gene24445:CDS 25.0%
!!! ATTTTTGTTATTGAAGGTGA+GGG + chr1.1:4186761-4186780 MS.gene24445:intron 25.0%
!!! TATTTTTGTTATTGAAGGTG+AGG + chr1.1:4186760-4186779 MS.gene24445:intron 25.0%
!!! TGAAATTGGATTTTTTACTG+TGG - chr1.1:4186913-4186932 None:intergenic 25.0%
!!! TTTTTGGTTAACGTTGTTTA+AGG - chr1.1:4187052-4187071 None:intergenic 25.0%
AAAGGAAGCAAATACAATCT+TGG + chr1.1:4187333-4187352 MS.gene24445:CDS 30.0%
AACAAACACTTTGTCTTCAT+TGG - chr1.1:4187795-4187814 None:intergenic 30.0%
AACGGATCCATTATTCAATT+CGG + chr1.1:4186791-4186810 MS.gene24445:CDS 30.0%
AATATGGAAACATGTGTATG+TGG - chr1.1:4186501-4186520 None:intergenic 30.0%
AATTAAGGGACATGACAATA+TGG - chr1.1:4186517-4186536 None:intergenic 30.0%
ATATGGAAACATGTGTATGT+GGG - chr1.1:4186500-4186519 None:intergenic 30.0%
ATTAAGAATCGTTTGGATGA+AGG + chr1.1:4188294-4188313 MS.gene24445:CDS 30.0%
GAAAGTCCAATGAAAATGAA+TGG + chr1.1:4187991-4188010 MS.gene24445:CDS 30.0%
TTAAAAGCAAGATAGGAATG+AGG - chr1.1:4186963-4186982 None:intergenic 30.0%
! ATTGTCACGGTTATTTGTTA+TGG - chr1.1:4186578-4186597 None:intergenic 30.0%
!! AGTGTGTGTTTTTCTGAAAA+GGG + chr1.1:4187594-4187613 MS.gene24445:intron 30.0%
!! CATTCCTATCTTGCTTTTAA+CGG + chr1.1:4186963-4186982 MS.gene24445:CDS 30.0%
!! TGAAATAATAATGGTAACGG+TGG - chr1.1:4186549-4186568 None:intergenic 30.0%
!!! TTGCAGAGATTTGGTTTTTT+TGG - chr1.1:4187068-4187087 None:intergenic 30.0%
!!! TTTATTTTTTGGGTTGGTGT+TGG + chr1.1:4187140-4187159 MS.gene24445:intron 30.0%
AACTATTCCAAGGAATTTGG+AGG + chr1.1:4186716-4186735 MS.gene24445:intron 35.0%
ACACATTGTCATTAGCATCT+GGG - chr1.1:4187512-4187531 None:intergenic 35.0%
ACGGATCCATTATTCAATTC+GGG + chr1.1:4186792-4186811 MS.gene24445:CDS 35.0%
ACTATTCCAAGGAATTTGGA+GGG + chr1.1:4186717-4186736 MS.gene24445:intron 35.0%
AGTAAAGGAGAAGTTGCTTA+TGG + chr1.1:4188342-4188361 MS.gene24445:CDS 35.0%
CATCTATAAGTACACTTGTG+TGG - chr1.1:4187479-4187498 None:intergenic 35.0%
GCTTATGGATTTAACTGCAA+TGG + chr1.1:4188357-4188376 MS.gene24445:CDS 35.0%
GGGCTAATGAACAAAATGAT+TGG + chr1.1:4188102-4188121 MS.gene24445:CDS 35.0%
GGTGGAAAAGGAACAATTAA+GGG - chr1.1:4186531-4186550 None:intergenic 35.0%
GTACTTATAGATGTGTTGTG+TGG + chr1.1:4187486-4187505 MS.gene24445:intron 35.0%
GTCACTGTGACATTAAATCT+GGG + chr1.1:4187453-4187472 MS.gene24445:intron 35.0%
TAACTGCAATGGCATGTTTA+GGG + chr1.1:4188368-4188387 MS.gene24445:CDS 35.0%
TACTGTGGTTAAACCTGAAA+CGG - chr1.1:4186898-4186917 None:intergenic 35.0%
TGTCACTGTGACATTAAATC+TGG + chr1.1:4187452-4187471 MS.gene24445:intron 35.0%
TTAACTGCAATGGCATGTTT+AGG + chr1.1:4188367-4188386 MS.gene24445:CDS 35.0%
TTTCAGAAAAACACACACTC+TGG - chr1.1:4187593-4187612 None:intergenic 35.0%
TTTGATTATCGGATTCCATC+TGG + chr1.1:4187943-4187962 MS.gene24445:CDS 35.0%
! AACAAAATGATTGGTCGGAT+TGG + chr1.1:4188111-4188130 MS.gene24445:CDS 35.0%
! AGGAAGTGTGGACAATATTA+TGG - chr1.1:4186473-4186492 None:intergenic 35.0%
! GGAAGTCCATTCATTTTCAT+TGG - chr1.1:4188000-4188019 None:intergenic 35.0%
! TACTTTGTACGGGTTAAAAG+TGG + chr1.1:4187400-4187419 MS.gene24445:intron 35.0%
! TGAAGATTTTGCTAGACAAC+AGG + chr1.1:4186989-4187008 MS.gene24445:CDS 35.0%
!! AATAATGGTAACGGTGGAAA+AGG - chr1.1:4186543-4186562 None:intergenic 35.0%
!! CTCATTGCTGTTTCTAGTAA+AGG + chr1.1:4188327-4188346 MS.gene24445:CDS 35.0%
!! GAGTGTGTGTTTTTCTGAAA+AGG + chr1.1:4187593-4187612 MS.gene24445:intron 35.0%
!!! TTACTTGTTTTTGTAGGGTG+TGG + chr1.1:4187252-4187271 MS.gene24445:intron 35.0%
AACTGCAATGGCATGTTTAG+GGG + chr1.1:4188369-4188388 MS.gene24445:CDS 40.0%
AAGCATACCAACATTGTCAG+CGG - chr1.1:4187305-4187324 None:intergenic 40.0%
ACAAACAAATCGTAGCGACA+AGG + chr1.1:4186613-4186632 MS.gene24445:intron 40.0%
ACTAAACGAGCCAGTGAAAT+TGG - chr1.1:4186927-4186946 None:intergenic 40.0%
CAAACAAATCGTAGCGACAA+GGG + chr1.1:4186614-4186633 MS.gene24445:intron 40.0%
CAATGTTGGTATGCTTAAGC+TGG + chr1.1:4187309-4187328 MS.gene24445:CDS 40.0%
CACACATTGTCATTAGCATC+TGG - chr1.1:4187513-4187532 None:intergenic 40.0%
CGGTGGAAAAGGAACAATTA+AGG - chr1.1:4186532-4186551 None:intergenic 40.0%
CTTACTCGTGTTCTCAATCT+TGG + chr1.1:4186365-4186384 MS.gene24445:CDS 40.0%
CTTCTTCTTGACGTTGAAGA+GGG - chr1.1:4186334-4186353 None:intergenic 40.0%
GGTCCAAAGGGAAAATACTT+GGG + chr1.1:4187421-4187440 MS.gene24445:intron 40.0%
GTCACCGTGACATTTAATCT+GGG - chr1.1:4187544-4187563 None:intergenic 40.0%
GTGACCCAGATTAAATGTCA+CGG + chr1.1:4187537-4187556 MS.gene24445:intron 40.0%
GTGTGCTGCAGTTTGATTAT+CGG + chr1.1:4187932-4187951 MS.gene24445:intron 40.0%
GTTATTGAAGGTGAGGGAAT+TGG + chr1.1:4186767-4186786 MS.gene24445:intron 40.0%
GTTCATGGAGGTTGGAATTT+GGG + chr1.1:4188410-4188429 MS.gene24445:CDS 40.0%
TGGTCCAAAGGGAAAATACT+TGG + chr1.1:4187420-4187439 MS.gene24445:intron 40.0%
TGTCACCGTGACATTTAATC+TGG - chr1.1:4187545-4187564 None:intergenic 40.0%
TTTAAGGAAGACACACACGT+GGG - chr1.1:4187036-4187055 None:intergenic 40.0%
TTTATCACCGCTGACAATGT+TGG + chr1.1:4187295-4187314 MS.gene24445:CDS 40.0%
! ATTGGTGACTCACCTTTGAT+AGG + chr1.1:4188129-4188148 MS.gene24445:CDS 40.0%
! GTGATGGAATACAAAGGTCT+TGG + chr1.1:4188246-4188265 MS.gene24445:CDS 40.0%
! TATGTCAACCAAGTGCTGTT+CGG + chr1.1:4187566-4187585 MS.gene24445:intron 40.0%
! TCACCCAAGTATTTTCCCTT+TGG - chr1.1:4187427-4187446 None:intergenic 40.0%
!! TTGGTGTTGGAACTTTGCTA+AGG + chr1.1:4187153-4187172 MS.gene24445:intron 40.0%
AAAAGGAACGGTGGAAATGG+AGG + chr1.1:4186836-4186855 MS.gene24445:CDS 45.0%
AACATGTGTATGTGGGTACG+AGG - chr1.1:4186493-4186512 None:intergenic 45.0%
AACGTCGATGGCAGAAAGAT+TGG - chr1.1:4186408-4186427 None:intergenic 45.0%
ACAATGCCCTCCAAATTCCT+TGG - chr1.1:4186726-4186745 None:intergenic 45.0%
AGCGCCGTTAAAAGCAAGAT+AGG - chr1.1:4186970-4186989 None:intergenic 45.0%
CACAAGTTCAACAACGTCGA+TGG - chr1.1:4186420-4186439 None:intergenic 45.0%
CATCGACGTTGTTGAACTTG+TGG + chr1.1:4186418-4186437 MS.gene24445:CDS 45.0%
CCACATGTTTCGTATCCAGA+TGG - chr1.1:4187961-4187980 None:intergenic 45.0%
CCACGACCCGAATTGAATAA+TGG - chr1.1:4186801-4186820 None:intergenic 45.0%
CCATCTGGATACGAAACATG+TGG + chr1.1:4187958-4187977 MS.gene24445:CDS 45.0%
CCATTATTCAATTCGGGTCG+TGG + chr1.1:4186798-4186817 MS.gene24445:CDS 45.0%
CGGGTTAAAAGTGGTCCAAA+GGG + chr1.1:4187409-4187428 MS.gene24445:intron 45.0%
CGTTTGGATGAAGGATATGC+TGG + chr1.1:4188303-4188322 MS.gene24445:CDS 45.0%
GAAGGTGAGGGAATTGGAAA+CGG + chr1.1:4186773-4186792 MS.gene24445:intron 45.0%
GACGTTGAAGAGGGAGATTA+GGG - chr1.1:4186325-4186344 None:intergenic 45.0%
GATGGACCAAAAAGACGATG+CGG + chr1.1:4186870-4186889 MS.gene24445:CDS 45.0%
GCTTCTTCTTGACGTTGAAG+AGG - chr1.1:4186335-4186354 None:intergenic 45.0%
GGAAAAAGGAACGGTGGAAA+TGG + chr1.1:4186833-4186852 MS.gene24445:CDS 45.0%
GGAAATGGAGGCTAGCATAA+TGG + chr1.1:4186848-4186867 MS.gene24445:CDS 45.0%
GGTTCATGGAGGTTGGAATT+TGG + chr1.1:4188409-4188428 MS.gene24445:CDS 45.0%
GTTTAAGGAAGACACACACG+TGG - chr1.1:4187037-4187056 None:intergenic 45.0%
TATGATAGCCTCTCCTTCAC+CGG - chr1.1:4188196-4188215 None:intergenic 45.0%
TGACGTTGAAGAGGGAGATT+AGG - chr1.1:4186326-4186345 None:intergenic 45.0%
TGCCCTAACGGAAAAAGGAA+CGG + chr1.1:4186824-4186843 MS.gene24445:CDS 45.0%
TGGTATGCTTAAGCTGGCAA+AGG + chr1.1:4187315-4187334 MS.gene24445:CDS 45.0%
! ACGGGTTAAAAGTGGTCCAA+AGG + chr1.1:4187408-4187427 MS.gene24445:intron 45.0%
! ATGGAGGCTAGCATAATGGA+TGG + chr1.1:4186852-4186871 MS.gene24445:CDS 45.0%
! CACCGTTCCTTTTTCCGTTA+GGG - chr1.1:4186829-4186848 None:intergenic 45.0%
! TCGGCTGTGATGGAATACAA+AGG + chr1.1:4188240-4188259 MS.gene24445:CDS 45.0%
! TCTTGGTCTTCAAGAAGCAG+TGG + chr1.1:4188263-4188282 MS.gene24445:CDS 45.0%
!! TTCACTGGCTCGTTTAGTCA+TGG + chr1.1:4186929-4186948 MS.gene24445:CDS 45.0%
!!! CTTGTTTTTGTAGGGTGTGG+AGG + chr1.1:4187255-4187274 MS.gene24445:intron 45.0%
ACTCACCTTTGATAGGAGCC+GGG + chr1.1:4188136-4188155 MS.gene24445:CDS 50.0%
CCTAACGGAAAAAGGAACGG+TGG + chr1.1:4186827-4186846 MS.gene24445:CDS 50.0%
GAAGACACACACGTGGGAAT+AGG - chr1.1:4187030-4187049 None:intergenic 50.0%
GAAGGAGAGGCTATCATACG+TGG + chr1.1:4188198-4188217 MS.gene24445:CDS 50.0%
GACTCACCTTTGATAGGAGC+CGG + chr1.1:4188135-4188154 MS.gene24445:CDS 50.0%
GGATCTGCCCTAACGGAAAA+AGG + chr1.1:4186819-4186838 MS.gene24445:CDS 50.0%
GGCTATCATACGTGGCACTT+TGG + chr1.1:4188206-4188225 MS.gene24445:CDS 50.0%
GTCTACGCACCTGAAACAGT+CGG + chr1.1:4188027-4188046 MS.gene24445:CDS 50.0%
GTTTAGGGGATGTGCTTCTG+AGG + chr1.1:4188383-4188402 MS.gene24445:CDS 50.0%
TAGTTGTGGACCGTGAAGGA+AGG + chr1.1:4188055-4188074 MS.gene24445:CDS 50.0%
TATGTGGGTACGAGGAAGTG+TGG - chr1.1:4186485-4186504 None:intergenic 50.0%
TCAGGTGCGTAGACACTCAT+TGG - chr1.1:4188021-4188040 None:intergenic 50.0%
TCTACGCACCTGAAACAGTC+GGG + chr1.1:4188028-4188047 MS.gene24445:CDS 50.0%
TTTGTAGGGTGTGGAGGTTC+TGG + chr1.1:4187261-4187280 MS.gene24445:intron 50.0%
! CCACCGTTCCTTTTTCCGTT+AGG - chr1.1:4186830-4186849 None:intergenic 50.0%
! TGCTTCTGAGGATGGGTTCA+TGG + chr1.1:4188395-4188414 MS.gene24445:CDS 50.0%
! TTCTGAGGATGGGTTCATGG+AGG + chr1.1:4188398-4188417 MS.gene24445:CDS 50.0%
AACAGTCGGGTGCGTAGTTG+TGG + chr1.1:4188041-4188060 MS.gene24445:CDS 55.0%
AAGGTTACACGCGTAGGTCC+CGG - chr1.1:4188157-4188176 None:intergenic 55.0%
ACCTACGCGTGTAACCTTGC+TGG + chr1.1:4188159-4188178 MS.gene24445:CDS 55.0%
ACTACGCACCCGACTGTTTC+AGG - chr1.1:4188039-4188058 None:intergenic 55.0%
ACTCTGGACCGAACAGCACT+TGG - chr1.1:4187577-4187596 None:intergenic 55.0%
CAGCAGCACACCTTCCTTCA+CGG - chr1.1:4188068-4188087 None:intergenic 55.0%
GGTTGGGCAATTGCTGTGCA+TGG + chr1.1:4186284-4186303 MS.gene24445:CDS 55.0%
TAGGTCCCGGCTCCTATCAA+AGG - chr1.1:4188144-4188163 None:intergenic 55.0%
TGCGTAGTTGTGGACCGTGA+AGG + chr1.1:4188051-4188070 MS.gene24445:CDS 55.0%
TGGGCAATTGCTGTGCATGG+TGG + chr1.1:4186287-4186306 MS.gene24445:CDS 55.0%
! ACGGCACCGCATCGTCTTTT+TGG - chr1.1:4186879-4186898 None:intergenic 55.0%
! AGGGGATGTGCTTCTGAGGA+TGG + chr1.1:4188387-4188406 MS.gene24445:CDS 55.0%
! ATTGCTGTGCATGGTGGTGC+TGG + chr1.1:4186293-4186312 MS.gene24445:CDS 55.0%
! GAGGATGGGTTCATGGAGGT+TGG + chr1.1:4188402-4188421 MS.gene24445:CDS 55.0%
! GGGGATGTGCTTCTGAGGAT+GGG + chr1.1:4188388-4188407 MS.gene24445:CDS 55.0%
CATTAGCCCGCCTGTTGACG+TGG - chr1.1:4188091-4188110 None:intergenic 60.0%
CTTGCTGGCGTCTCATGCAC+CGG + chr1.1:4188174-4188193 MS.gene24445:CDS 60.0%
GCCAGCAAGGTTACACGCGT+AGG - chr1.1:4188163-4188182 None:intergenic 60.0%
GGGTCGTGGATCTGCCCTAA+CGG + chr1.1:4186812-4186831 MS.gene24445:CDS 60.0%
! CACTTTGGCGCGAGAGGTGT+CGG + chr1.1:4188221-4188240 MS.gene24445:CDS 60.0%
! CTCATGCACCGGTGAAGGAG+AGG + chr1.1:4188185-4188204 MS.gene24445:CDS 60.0%
! TGTGCTGCTGCCACGTCAAC+AGG + chr1.1:4188078-4188097 MS.gene24445:CDS 60.0%
!! AGACGATGCGGTGCCGTTTC+AGG + chr1.1:4186882-4186901 MS.gene24445:CDS 60.0%
ACGTGGCACTTTGGCGCGAG+AGG + chr1.1:4188215-4188234 MS.gene24445:CDS 65.0%
CGGTGCATGAGACGCCAGCA+AGG - chr1.1:4188176-4188195 None:intergenic 65.0%
CTGCTGCCACGTCAACAGGC+GGG + chr1.1:4188082-4188101 MS.gene24445:CDS 65.0%
GCTGCTGCCACGTCAACAGG+CGG + chr1.1:4188081-4188100 MS.gene24445:CDS 65.0%
! GGCGTCTCATGCACCGGTGA+AGG + chr1.1:4188180-4188199 MS.gene24445:CDS 65.0%
!! GCGAGAGGTGTCGGCTGTGA+TGG + chr1.1:4188230-4188249 MS.gene24445:CDS 65.0%


Chromosome Type Strat End Strand Name
chr1.1 gene 4186278 4188437 4186278 ID=MS.gene24445
chr1.1 mRNA 4186278 4188437 4186278 ID=MS.gene24445.t1;Parent=MS.gene24445
chr1.1 exon 4186278 4186439 4186278 ID=MS.gene24445.t1.exon1;Parent=MS.gene24445.t1
chr1.1 CDS 4186278 4186439 4186278 ID=cds.MS.gene24445.t1;Parent=MS.gene24445.t1
chr1.1 exon 4186777 4187010 4186777 ID=MS.gene24445.t1.exon2;Parent=MS.gene24445.t1
chr1.1 CDS 4186777 4187010 4186777 ID=cds.MS.gene24445.t1;Parent=MS.gene24445.t1
chr1.1 exon 4187268 4187354 4187268 ID=MS.gene24445.t1.exon3;Parent=MS.gene24445.t1
chr1.1 CDS 4187268 4187354 4187268 ID=cds.MS.gene24445.t1;Parent=MS.gene24445.t1
chr1.1 exon 4187943 4188437 4187943 ID=MS.gene24445.t1.exon4;Parent=MS.gene24445.t1
chr1.1 CDS 4187943 4188437 4187943 ID=cds.MS.gene24445.t1;Parent=MS.gene24445.t1
Gene Sequence

>MS.gene24445

ATGGGTGGTTGGGCAATTGCTGTGCATGGTGGTGCTGGTGTTGACCCTAATCTCCCTCTTCAACGTCAAGAAGAAGCTAAACAACTTCTTACTCGTGTTCTCAATCTTGGCATCTCTGCTCTTCGTTCCAATCTTTCTGCCATCGACGTTGTTGAACTTGTGGTATGTGTTGTGTTATCTCATACACATGTACCATAATATTGTCCACACTTCCTCGTACCCACATACACATGTTTCCATATTGTCATGTCCCTTAATTGTTCCTTTTCCACCGTTACCATTATTATTTCATAGCTACCATAACAAATAACCGTGACAATCATAATAAAACTATAACAAACAAATCGTAGCGACAAGGGCTGAATATCTTGAATCTAGTACATGCATTGTCATTACGAACAATTTTTATAAACTACATAATTAACAAGAATATATTTTAACTATTCCAAGGAATTTGGAGGGCATTGTTATTAATATTTATTTATTTTTGTTATTGAAGGTGAGGGAATTGGAAACGGATCCATTATTCAATTCGGGTCGTGGATCTGCCCTAACGGAAAAAGGAACGGTGGAAATGGAGGCTAGCATAATGGATGGACCAAAAAGACGATGCGGTGCCGTTTCAGGTTTAACCACAGTAAAAAATCCAATTTCACTGGCTCGTTTAGTCATGGATAAATCTCCTCATTCCTATCTTGCTTTTAACGGCGCTGAAGATTTTGCTAGACAACAGGTTCGTGTTCTCTTTACCTATTCCCACGTGTGTGTCTTCCTTAAACAACGTTAACCAAAAAAACCAAATCTCTGCAATTTTTTTTTTTGTTTGTTTTATCTTTATTTACAAAAAAATAGGAAAAGATATTTTATTTTTTGGGTTGGTGTTGGAACTTTGCTAAGGAGAATCTGTTGATTATAATATATGTGACCGTGTACGAATTATTAATTTATTATTAGTGCTAAATTACTAAATTATTTTACTTGTTTTTGTAGGGTGTGGAGGTTCTGGACAATGAGTACTTTATCACCGCTGACAATGTTGGTATGCTTAAGCTGGCAAAGGAAGCAAATACAATCTTGGTACGTAATTATTATCAAATTCAACCATGGATCTTGAATTATTATTACTTTGTACGGGTTAAAAGTGGTCCAAAGGGAAAATACTTGGGTGACATAATGTCACTGTGACATTAAATCTGGGCCACACAAGTGTACTTATAGATGTGTTGTGTGGCCCAGATGCTAATGACAATGTGTGTTGTGTGACCCAGATTAAATGTCACGGTGACATTATGTCAACCAAGTGCTGTTCGGTCCAGAGTGTGTGTTTTTCTGAAAAGGGTCTTTTCACATATTGAAATAAACGTGGGTAAAAATTATTTTCAGATTGGGATTCTTTTACAAAGTAAAGAAATATTGTATTCATGCATAGTTTGGACCAATTAGTACACTTTCTCTTTATTTAATATATATTTATATCTACCAAACTCTTTTGTTTATAAACAAATCTCAAACTACCAATGAAGACAAAGTGTTTGTTCAATTATTATTAATTAATTATTGGTAGCAATATGATTCTTTCATTCATTTTTTACTGTATCTTTCTTTTCATATTTAATTAACAATTTGAAACAACATAATTAATTAATTATTGATTGTGTGCTGCAGTTTGATTATCGGATTCCATCTGGATACGAAACATGTGGTGCAGCAGTTGAAAGTCCAATGAAAATGAATGGACTTCCAATGAGTGTCTACGCACCTGAAACAGTCGGGTGCGTAGTTGTGGACCGTGAAGGAAGGTGTGCTGCTGCCACGTCAACAGGCGGGCTAATGAACAAAATGATTGGTCGGATTGGTGACTCACCTTTGATAGGAGCCGGGACCTACGCGTGTAACCTTGCTGGCGTCTCATGCACCGGTGAAGGAGAGGCTATCATACGTGGCACTTTGGCGCGAGAGGTGTCGGCTGTGATGGAATACAAAGGTCTTGGTCTTCAAGAAGCAGTGGATTTTGTCATTAAGAATCGTTTGGATGAAGGATATGCTGGACTCATTGCTGTTTCTAGTAAAGGAGAAGTTGCTTATGGATTTAACTGCAATGGCATGTTTAGGGGATGTGCTTCTGAGGATGGGTTCATGGAGGTTGGAATTTGGGAGTAA

Protein sequence

>MS.gene24445.t1

MGGWAIAVHGGAGVDPNLPLQRQEEAKQLLTRVLNLGISALRSNLSAIDVVELVVRELETDPLFNSGRGSALTEKGTVEMEASIMDGPKRRCGAVSGLTTVKNPISLARLVMDKSPHSYLAFNGAEDFARQQGVEVLDNEYFITADNVGMLKLAKEANTILFDYRIPSGYETCGAAVESPMKMNGLPMSVYAPETVGCVVVDREGRCAAATSTGGLMNKMIGRIGDSPLIGAGTYACNLAGVSCTGEGEAIIRGTLAREVSAVMEYKGLGLQEAVDFVIKNRLDEGYAGLIAVSSKGEVAYGFNCNGMFRGCASEDGFMEVGIWE