Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene24445.t1 | XP_003589126.1 | 100 | 325 | 0 | 0 | 1 | 325 | 1 | 325 | 5.10E-183 | 650.2 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene24445.t1 | Q8GXG1 | 84.6 | 325 | 50 | 0 | 1 | 325 | 1 | 325 | 1.8e-157 | 556.6 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene24445.t1 | Q2HTR7 | 100.0 | 325 | 0 | 0 | 1 | 325 | 1 | 325 | 3.6e-183 | 650.2 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MS.gene049142 | MS.gene24445 | 0.841867 | 3.66E-58 | -1.69E-46 |
MS.gene049159 | MS.gene24445 | 0.808965 | 2.39E-50 | -1.69E-46 |
MS.gene049350 | MS.gene24445 | 0.817409 | 3.35E-52 | -1.69E-46 |
MS.gene049501 | MS.gene24445 | 0.840179 | 1.02E-57 | -1.69E-46 |
MS.gene049887 | MS.gene24445 | 0.800368 | 1.49E-48 | -1.69E-46 |
MS.gene050657 | MS.gene24445 | 0.821486 | 3.94E-53 | -1.69E-46 |
MS.gene051328 | MS.gene24445 | 0.810393 | 1.18E-50 | -1.69E-46 |
MS.gene051388 | MS.gene24445 | 0.827189 | 1.79E-54 | -1.69E-46 |
MS.gene051719 | MS.gene24445 | 0.847576 | 1.06E-59 | -1.69E-46 |
MS.gene051720 | MS.gene24445 | 0.823521 | 1.32E-53 | -1.69E-46 |
MS.gene051744 | MS.gene24445 | 0.819618 | 1.06E-52 | -1.69E-46 |
MS.gene052307 | MS.gene24445 | 0.816308 | 5.91E-52 | -1.69E-46 |
MS.gene052459 | MS.gene24445 | 0.817579 | 3.07E-52 | -1.69E-46 |
MS.gene052463 | MS.gene24445 | 0.815892 | 7.32E-52 | -1.69E-46 |
MS.gene052516 | MS.gene24445 | 0.846454 | 2.15E-59 | -1.69E-46 |
MS.gene052519 | MS.gene24445 | 0.810808 | 9.59E-51 | -1.69E-46 |
MS.gene052561 | MS.gene24445 | 0.829203 | 5.87E-55 | -1.69E-46 |
MS.gene052773 | MS.gene24445 | 0.806765 | 7.02E-50 | -1.69E-46 |
MS.gene052863 | MS.gene24445 | 0.819397 | 1.19E-52 | -1.69E-46 |
MS.gene052896 | MS.gene24445 | 0.841797 | 3.82E-58 | -1.69E-46 |
MS.gene053144 | MS.gene24445 | 0.853207 | 2.78E-61 | -1.69E-46 |
MS.gene053164 | MS.gene24445 | 0.823167 | 1.60E-53 | -1.69E-46 |
MS.gene053226 | MS.gene24445 | 0.801655 | 8.13E-49 | -1.69E-46 |
MS.gene053581 | MS.gene24445 | 0.815483 | 9.03E-52 | -1.69E-46 |
MS.gene054584 | MS.gene24445 | 0.84679 | 1.74E-59 | -1.69E-46 |
MS.gene054651 | MS.gene24445 | 0.82935 | 5.41E-55 | -1.69E-46 |
MS.gene055465 | MS.gene24445 | 0.849796 | 2.57E-60 | -1.69E-46 |
MS.gene055466 | MS.gene24445 | 0.864289 | 1.35E-64 | -1.69E-46 |
MS.gene055468 | MS.gene24445 | 0.861623 | 9.01E-64 | -1.69E-46 |
MS.gene055469 | MS.gene24445 | 0.825341 | 4.94E-54 | -1.69E-46 |
MS.gene055513 | MS.gene24445 | 0.838646 | 2.54E-57 | -1.69E-46 |
MS.gene055537 | MS.gene24445 | 0.812599 | 3.91E-51 | -1.69E-46 |
MS.gene055580 | MS.gene24445 | -0.841788 | 3.84E-58 | -1.69E-46 |
MS.gene055818 | MS.gene24445 | 0.809568 | 1.77E-50 | -1.69E-46 |
MS.gene055926 | MS.gene24445 | 0.808603 | 2.86E-50 | -1.69E-46 |
MS.gene056043 | MS.gene24445 | -0.837871 | 4.02E-57 | -1.69E-46 |
MS.gene056174 | MS.gene24445 | 0.810165 | 1.32E-50 | -1.69E-46 |
MS.gene056308 | MS.gene24445 | 0.828416 | 9.10E-55 | -1.69E-46 |
MS.gene056538 | MS.gene24445 | 0.805348 | 1.39E-49 | -1.69E-46 |
MS.gene056595 | MS.gene24445 | 0.812357 | 4.41E-51 | -1.69E-46 |
MS.gene057294 | MS.gene24445 | 0.800718 | 1.26E-48 | -1.69E-46 |
MS.gene057915 | MS.gene24445 | 0.807254 | 5.53E-50 | -1.69E-46 |
MS.gene058010 | MS.gene24445 | 0.823265 | 1.52E-53 | -1.69E-46 |
MS.gene058037 | MS.gene24445 | 0.812307 | 4.53E-51 | -1.69E-46 |
MS.gene058339 | MS.gene24445 | 0.810564 | 1.08E-50 | -1.69E-46 |
MS.gene058625 | MS.gene24445 | 0.815833 | 7.55E-52 | -1.69E-46 |
MS.gene059283 | MS.gene24445 | 0.800445 | 1.44E-48 | -1.69E-46 |
MS.gene059570 | MS.gene24445 | 0.849894 | 2.41E-60 | -1.69E-46 |
MS.gene059625 | MS.gene24445 | 0.809397 | 1.93E-50 | -1.69E-46 |
MS.gene06052 | MS.gene24445 | 0.807408 | 5.13E-50 | -1.69E-46 |
MS.gene060932 | MS.gene24445 | 0.803136 | 4.03E-49 | -1.69E-46 |
MS.gene061100 | MS.gene24445 | 0.820317 | 7.31E-53 | -1.69E-46 |
PPI:
Gene1 | Gene2 | Type |
---|---|---|
MS.gene24445 | MS.gene063514 | PPI |
MS.gene24445 | MS.gene038824 | PPI |
MS.gene24445 | MS.gene038825 | PPI |
MS.gene24445 | MS.gene033041 | PPI |
MS.gene044475 | MS.gene24445 | PPI |
MS.gene03345 | MS.gene24445 | PPI |
MS.gene033042 | MS.gene24445 | PPI |
MS.gene063515 | MS.gene24445 | PPI |
MS.gene24445 | MS.gene044476 | PPI |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene24445.t1 | MTR_1g018760 | 100.000 | 325 | 0 | 0 | 1 | 325 | 1 | 325 | 0.0 | 662 |
MS.gene24445.t1 | MTR_3g102370 | 85.846 | 325 | 43 | 2 | 1 | 325 | 1 | 322 | 0.0 | 570 |
MS.gene24445.t1 | MTR_1g094030 | 83.385 | 325 | 49 | 1 | 1 | 325 | 1 | 320 | 0.0 | 552 |
MS.gene24445.t1 | MTR_4g109900 | 59.006 | 322 | 127 | 1 | 3 | 324 | 2 | 318 | 2.83e-132 | 379 |
MS.gene24445.t1 | MTR_4g109920 | 59.752 | 323 | 124 | 2 | 3 | 324 | 2 | 319 | 3.34e-132 | 379 |
MS.gene24445.t1 | MTR_8g031580 | 30.449 | 312 | 165 | 11 | 6 | 281 | 23 | 318 | 5.62e-23 | 98.2 |
MS.gene24445.t1 | MTR_8g031580 | 30.449 | 312 | 165 | 11 | 6 | 281 | 23 | 318 | 1.38e-22 | 97.4 |
MS.gene24445.t1 | MTR_3g008180 | 28.754 | 313 | 182 | 13 | 38 | 316 | 40 | 345 | 2.07e-18 | 85.1 |
MS.gene24445.t1 | MTR_3g008180 | 28.226 | 248 | 149 | 10 | 93 | 316 | 4 | 246 | 5.10e-14 | 71.2 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene24445.t1 | AT3G16150 | 84.615 | 325 | 50 | 0 | 1 | 325 | 1 | 325 | 0.0 | 566 |
MS.gene24445.t1 | AT5G08100 | 57.492 | 327 | 121 | 4 | 1 | 324 | 1 | 312 | 3.01e-125 | 361 |
MS.gene24445.t1 | AT5G08100 | 57.490 | 247 | 88 | 3 | 80 | 324 | 1 | 232 | 3.77e-94 | 279 |
MS.gene24445.t1 | AT4G00590 | 27.187 | 320 | 179 | 8 | 6 | 285 | 15 | 320 | 1.65e-20 | 91.7 |
Find 93 sgRNAs with CRISPR-Local
Find 177 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
AGACGATGCGGTGCCGTTTC+AGG | 0.158496 | 1.1:+4186882 | MS.gene24445:CDS |
GGTTCATGGAGGTTGGAATT+TGG | 0.195033 | 1.1:+4188409 | MS.gene24445:CDS |
ACTACGCACCCGACTGTTTC+AGG | 0.214500 | 1.1:-4188036 | None:intergenic |
GTTCATGGAGGTTGGAATTT+GGG | 0.262833 | 1.1:+4188410 | MS.gene24445:CDS |
ACTAAACGAGCCAGTGAAAT+TGG | 0.271206 | 1.1:-4186924 | None:intergenic |
TTAACTGCAATGGCATGTTT+AGG | 0.291387 | 1.1:+4188367 | MS.gene24445:CDS |
TTTGTAGGGTGTGGAGGTTC+TGG | 0.300802 | 1.1:+4187261 | MS.gene24445:intron |
GGATCTGCCCTAACGGAAAA+AGG | 0.305956 | 1.1:+4186819 | MS.gene24445:CDS |
AACGGATCCATTATTCAATT+CGG | 0.328084 | 1.1:+4186791 | MS.gene24445:CDS |
AGTAAAGGAGAAGTTGCTTA+TGG | 0.336064 | 1.1:+4188342 | MS.gene24445:CDS |
TAACTGCAATGGCATGTTTA+GGG | 0.343986 | 1.1:+4188368 | MS.gene24445:CDS |
GTTATTGAAGGTGAGGGAAT+TGG | 0.347604 | 1.1:+4186767 | MS.gene24445:intron |
CTTACTCGTGTTCTCAATCT+TGG | 0.354252 | 1.1:+4186365 | MS.gene24445:CDS |
TGTGCTGCTGCCACGTCAAC+AGG | 0.356128 | 1.1:+4188078 | MS.gene24445:CDS |
TGACGTTGAAGAGGGAGATT+AGG | 0.362167 | 1.1:-4186323 | None:intergenic |
GTGTGCTGCAGTTTGATTAT+CGG | 0.363877 | 1.1:+4187932 | MS.gene24445:intron |
ATTGCTGTGCATGGTGGTGC+TGG | 0.397163 | 1.1:+4186293 | MS.gene24445:CDS |
AGGGGATGTGCTTCTGAGGA+TGG | 0.401581 | 1.1:+4188387 | MS.gene24445:CDS |
ACGGATCCATTATTCAATTC+GGG | 0.402987 | 1.1:+4186792 | MS.gene24445:CDS |
TGCTTCTGAGGATGGGTTCA+TGG | 0.405891 | 1.1:+4188395 | MS.gene24445:CDS |
CCACGACCCGAATTGAATAA+TGG | 0.409899 | 1.1:-4186798 | None:intergenic |
CTCATTGCTGTTTCTAGTAA+AGG | 0.414337 | 1.1:+4188327 | MS.gene24445:CDS |
TACTGTGGTTAAACCTGAAA+CGG | 0.417200 | 1.1:-4186895 | None:intergenic |
AACGTCGATGGCAGAAAGAT+TGG | 0.417587 | 1.1:-4186405 | None:intergenic |
TTTGATTATCGGATTCCATC+TGG | 0.417677 | 1.1:+4187943 | MS.gene24445:CDS |
ATTGGTGACTCACCTTTGAT+AGG | 0.420480 | 1.1:+4188129 | MS.gene24445:CDS |
AGAGAGAAACATGGGTGGTT+GGG | 0.423456 | 1.1:+4186268 | None:intergenic |
CCATTATTCAATTCGGGTCG+TGG | 0.423817 | 1.1:+4186798 | MS.gene24445:CDS |
GGTTGGGCAATTGCTGTGCA+TGG | 0.428468 | 1.1:+4186284 | MS.gene24445:CDS |
CACTTTGGCGCGAGAGGTGT+CGG | 0.430026 | 1.1:+4188221 | MS.gene24445:CDS |
GGAAATGGAGGCTAGCATAA+TGG | 0.434511 | 1.1:+4186848 | MS.gene24445:CDS |
GACGTTGAAGAGGGAGATTA+GGG | 0.438575 | 1.1:-4186322 | None:intergenic |
ATTAAGAATCGTTTGGATGA+AGG | 0.439748 | 1.1:+4188294 | MS.gene24445:CDS |
AAAGGAAGCAAATACAATCT+TGG | 0.457652 | 1.1:+4187333 | MS.gene24445:CDS |
GGGGATGTGCTTCTGAGGAT+GGG | 0.460240 | 1.1:+4188388 | MS.gene24445:CDS |
CAGCAGCACACCTTCCTTCA+CGG | 0.468263 | 1.1:-4188065 | None:intergenic |
TCAGGTGCGTAGACACTCAT+TGG | 0.468761 | 1.1:-4188018 | None:intergenic |
GACTCACCTTTGATAGGAGC+CGG | 0.472240 | 1.1:+4188135 | MS.gene24445:CDS |
ACCTACGCGTGTAACCTTGC+TGG | 0.480120 | 1.1:+4188159 | MS.gene24445:CDS |
GAGGATGGGTTCATGGAGGT+TGG | 0.480884 | 1.1:+4188402 | MS.gene24445:CDS |
AGCGCCGTTAAAAGCAAGAT+AGG | 0.481695 | 1.1:-4186967 | None:intergenic |
GGCGTCTCATGCACCGGTGA+AGG | 0.482051 | 1.1:+4188180 | MS.gene24445:CDS |
GCTTATGGATTTAACTGCAA+TGG | 0.484263 | 1.1:+4188357 | MS.gene24445:CDS |
TTCACTGGCTCGTTTAGTCA+TGG | 0.486469 | 1.1:+4186929 | MS.gene24445:CDS |
AAGGTTACACGCGTAGGTCC+CGG | 0.486913 | 1.1:-4188154 | None:intergenic |
GAAAGTCCAATGAAAATGAA+TGG | 0.491181 | 1.1:+4187991 | MS.gene24445:CDS |
AACAGTCGGGTGCGTAGTTG+TGG | 0.493878 | 1.1:+4188041 | MS.gene24445:CDS |
CGTTTGGATGAAGGATATGC+TGG | 0.504298 | 1.1:+4188303 | MS.gene24445:CDS |
GTGATGGAATACAAAGGTCT+TGG | 0.504451 | 1.1:+4188246 | MS.gene24445:CDS |
AACAAAATGATTGGTCGGAT+TGG | 0.504757 | 1.1:+4188111 | MS.gene24445:CDS |
GAGAGAGAAACATGGGTGGT+TGG | 0.505927 | 1.1:+4186267 | None:intergenic |
GGGCTAATGAACAAAATGAT+TGG | 0.512413 | 1.1:+4188102 | MS.gene24445:CDS |
GGCTATCATACGTGGCACTT+TGG | 0.516286 | 1.1:+4188206 | MS.gene24445:CDS |
GCGAGAGGTGTCGGCTGTGA+TGG | 0.520900 | 1.1:+4188230 | MS.gene24445:CDS |
TATGATAGCCTCTCCTTCAC+CGG | 0.531227 | 1.1:-4188193 | None:intergenic |
CTTCTTCTTGACGTTGAAGA+GGG | 0.532258 | 1.1:-4186331 | None:intergenic |
GCTGCTGCCACGTCAACAGG+CGG | 0.537860 | 1.1:+4188081 | MS.gene24445:CDS |
CTTGCTGGCGTCTCATGCAC+CGG | 0.541455 | 1.1:+4188174 | MS.gene24445:CDS |
CATTAGCCCGCCTGTTGACG+TGG | 0.549451 | 1.1:-4188088 | None:intergenic |
CTGCTGCCACGTCAACAGGC+GGG | 0.561806 | 1.1:+4188082 | MS.gene24445:CDS |
TAATGAACAAAATGATTGGT+CGG | 0.563124 | 1.1:+4188106 | MS.gene24445:CDS |
GAAGGTGAGGGAATTGGAAA+CGG | 0.565330 | 1.1:+4186773 | MS.gene24445:intron |
CAATGTTGGTATGCTTAAGC+TGG | 0.567336 | 1.1:+4187309 | MS.gene24445:CDS |
GCTTCTTCTTGACGTTGAAG+AGG | 0.568251 | 1.1:-4186332 | None:intergenic |
GTTTAGGGGATGTGCTTCTG+AGG | 0.570942 | 1.1:+4188383 | MS.gene24445:CDS |
ACGTGGCACTTTGGCGCGAG+AGG | 0.574745 | 1.1:+4188215 | MS.gene24445:CDS |
TAGGTCCCGGCTCCTATCAA+AGG | 0.574816 | 1.1:-4188141 | None:intergenic |
TTTATCACCGCTGACAATGT+TGG | 0.576194 | 1.1:+4187295 | MS.gene24445:CDS |
TCTACGCACCTGAAACAGTC+GGG | 0.579137 | 1.1:+4188028 | MS.gene24445:CDS |
GGGTCGTGGATCTGCCCTAA+CGG | 0.579570 | 1.1:+4186812 | MS.gene24445:CDS |
CCACATGTTTCGTATCCAGA+TGG | 0.581145 | 1.1:-4187958 | None:intergenic |
AACTGCAATGGCATGTTTAG+GGG | 0.582673 | 1.1:+4188369 | MS.gene24445:CDS |
TCTTGGTCTTCAAGAAGCAG+TGG | 0.595757 | 1.1:+4188263 | MS.gene24445:CDS |
CACAAGTTCAACAACGTCGA+TGG | 0.596183 | 1.1:-4186417 | None:intergenic |
CATCGACGTTGTTGAACTTG+TGG | 0.596402 | 1.1:+4186418 | MS.gene24445:CDS |
ATGGAGGCTAGCATAATGGA+TGG | 0.598729 | 1.1:+4186852 | MS.gene24445:CDS |
CTCATGCACCGGTGAAGGAG+AGG | 0.599796 | 1.1:+4188185 | MS.gene24445:CDS |
ACTCACCTTTGATAGGAGCC+GGG | 0.601444 | 1.1:+4188136 | MS.gene24445:CDS |
TGCGTAGTTGTGGACCGTGA+AGG | 0.611085 | 1.1:+4188051 | MS.gene24445:CDS |
GTCTACGCACCTGAAACAGT+CGG | 0.614969 | 1.1:+4188027 | MS.gene24445:CDS |
TTGAGAGAGAGAAACATGGG+TGG | 0.619739 | 1.1:+4186263 | None:intergenic |
AAAAGGAACGGTGGAAATGG+AGG | 0.622339 | 1.1:+4186836 | MS.gene24445:CDS |
TGGTATGCTTAAGCTGGCAA+AGG | 0.632666 | 1.1:+4187315 | MS.gene24445:CDS |
TTAAAAGCAAGATAGGAATG+AGG | 0.636686 | 1.1:-4186960 | None:intergenic |
CGGTGCATGAGACGCCAGCA+AGG | 0.648195 | 1.1:-4188173 | None:intergenic |
TGGGCAATTGCTGTGCATGG+TGG | 0.661106 | 1.1:+4186287 | MS.gene24445:CDS |
TAGTTGTGGACCGTGAAGGA+AGG | 0.661356 | 1.1:+4188055 | MS.gene24445:CDS |
CCATCTGGATACGAAACATG+TGG | 0.678131 | 1.1:+4187958 | MS.gene24445:CDS |
GCCAGCAAGGTTACACGCGT+AGG | 0.682958 | 1.1:-4188160 | None:intergenic |
GAAGGAGAGGCTATCATACG+TGG | 0.687695 | 1.1:+4188198 | MS.gene24445:CDS |
AAGCATACCAACATTGTCAG+CGG | 0.698333 | 1.1:-4187302 | None:intergenic |
TTCTGAGGATGGGTTCATGG+AGG | 0.702330 | 1.1:+4188398 | MS.gene24445:CDS |
TCGGCTGTGATGGAATACAA+AGG | 0.710713 | 1.1:+4188240 | MS.gene24445:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | AATTATTATTAATTAATTAT+TGG | + | chr1.1:4187816-4187835 | MS.gene24445:intron | 0.0% |
!!! | ATCTTTATTTACAAAAAAAT+AGG | + | chr1.1:4187108-4187127 | MS.gene24445:intron | 10.0% |
!!! | GAAAAGATATTTTATTTTTT+GGG | + | chr1.1:4187130-4187149 | MS.gene24445:intron | 10.0% |
!!! | TTATTTATTTTTGTTATTGA+AGG | + | chr1.1:4186755-4186774 | MS.gene24445:intron | 10.0% |
!! | ATAAATTAATAATTCGTACA+CGG | - | chr1.1:4187206-4187225 | None:intergenic | 15.0% |
!! | TGAATTATTATTACTTTGTA+CGG | + | chr1.1:4187389-4187408 | MS.gene24445:intron | 15.0% |
!!! | AATATATTTTAACTATTCCA+AGG | + | chr1.1:4186706-4186725 | MS.gene24445:intron | 15.0% |
!!! | ATTATTTTACTTGTTTTTGT+AGG | + | chr1.1:4187246-4187265 | MS.gene24445:intron | 15.0% |
!!! | GGAAAAGATATTTTATTTTT+TGG | + | chr1.1:4187129-4187148 | MS.gene24445:intron | 15.0% |
!!! | GTAAAAATTATTTTCAGATT+GGG | + | chr1.1:4187644-4187663 | MS.gene24445:intron | 15.0% |
!!! | TTATTTTACTTGTTTTTGTA+GGG | + | chr1.1:4187247-4187266 | MS.gene24445:intron | 15.0% |
!! | AAAAAAAAATTGCAGAGATT+TGG | - | chr1.1:4187077-4187096 | None:intergenic | 20.0% |
!! | ATTATTATCAAATTCAACCA+TGG | + | chr1.1:4187362-4187381 | MS.gene24445:intron | 20.0% |
!! | CTATGAAATAATAATGGTAA+CGG | - | chr1.1:4186552-4186571 | None:intergenic | 20.0% |
!! | GAATTATTATTACTTTGTAC+GGG | + | chr1.1:4187390-4187409 | MS.gene24445:intron | 20.0% |
!! | TAATAATAATTCAAGATCCA+TGG | - | chr1.1:4187382-4187401 | None:intergenic | 20.0% |
!! | TGTTTATAAACAAAAGAGTT+TGG | - | chr1.1:4187760-4187779 | None:intergenic | 20.0% |
!!! | AGATATTTTATTTTTTGGGT+TGG | + | chr1.1:4187134-4187153 | MS.gene24445:intron | 20.0% |
!!! | GGTAAAAATTATTTTCAGAT+TGG | + | chr1.1:4187643-4187662 | MS.gene24445:intron | 20.0% |
!!! | TAGTTTTATTATGATTGTCA+CGG | - | chr1.1:4186591-4186610 | None:intergenic | 20.0% |
! | AGTAAAAAATCCAATTTCAC+TGG | + | chr1.1:4186914-4186933 | MS.gene24445:CDS | 25.0% |
! | TAATGAACAAAATGATTGGT+CGG | + | chr1.1:4188106-4188125 | MS.gene24445:CDS | 25.0% |
! | TATTGTATTCATGCATAGTT+TGG | + | chr1.1:4187689-4187708 | MS.gene24445:intron | 25.0% |
! | TCACATATTGAAATAAACGT+GGG | + | chr1.1:4187622-4187641 | MS.gene24445:intron | 25.0% |
! | TGGTAGCTATGAAATAATAA+TGG | - | chr1.1:4186558-4186577 | None:intergenic | 25.0% |
! | TTCACATATTGAAATAAACG+TGG | + | chr1.1:4187621-4187640 | MS.gene24445:intron | 25.0% |
! | TTTAACTATTCCAAGGAATT+TGG | + | chr1.1:4186713-4186732 | MS.gene24445:intron | 25.0% |
!! | TAAAGAGAAAGTGTACTAAT+TGG | - | chr1.1:4187716-4187735 | None:intergenic | 25.0% |
!! | TTTTGTCATTAAGAATCGTT+TGG | + | chr1.1:4188287-4188306 | MS.gene24445:CDS | 25.0% |
!!! | ATTTTTGTTATTGAAGGTGA+GGG | + | chr1.1:4186761-4186780 | MS.gene24445:intron | 25.0% |
!!! | TATTTTTGTTATTGAAGGTG+AGG | + | chr1.1:4186760-4186779 | MS.gene24445:intron | 25.0% |
!!! | TGAAATTGGATTTTTTACTG+TGG | - | chr1.1:4186913-4186932 | None:intergenic | 25.0% |
!!! | TTTTTGGTTAACGTTGTTTA+AGG | - | chr1.1:4187052-4187071 | None:intergenic | 25.0% |
AAAGGAAGCAAATACAATCT+TGG | + | chr1.1:4187333-4187352 | MS.gene24445:CDS | 30.0% | |
AACAAACACTTTGTCTTCAT+TGG | - | chr1.1:4187795-4187814 | None:intergenic | 30.0% | |
AACGGATCCATTATTCAATT+CGG | + | chr1.1:4186791-4186810 | MS.gene24445:CDS | 30.0% | |
AATATGGAAACATGTGTATG+TGG | - | chr1.1:4186501-4186520 | None:intergenic | 30.0% | |
AATTAAGGGACATGACAATA+TGG | - | chr1.1:4186517-4186536 | None:intergenic | 30.0% | |
ATATGGAAACATGTGTATGT+GGG | - | chr1.1:4186500-4186519 | None:intergenic | 30.0% | |
ATTAAGAATCGTTTGGATGA+AGG | + | chr1.1:4188294-4188313 | MS.gene24445:CDS | 30.0% | |
GAAAGTCCAATGAAAATGAA+TGG | + | chr1.1:4187991-4188010 | MS.gene24445:CDS | 30.0% | |
TTAAAAGCAAGATAGGAATG+AGG | - | chr1.1:4186963-4186982 | None:intergenic | 30.0% | |
! | ATTGTCACGGTTATTTGTTA+TGG | - | chr1.1:4186578-4186597 | None:intergenic | 30.0% |
!! | AGTGTGTGTTTTTCTGAAAA+GGG | + | chr1.1:4187594-4187613 | MS.gene24445:intron | 30.0% |
!! | CATTCCTATCTTGCTTTTAA+CGG | + | chr1.1:4186963-4186982 | MS.gene24445:CDS | 30.0% |
!! | TGAAATAATAATGGTAACGG+TGG | - | chr1.1:4186549-4186568 | None:intergenic | 30.0% |
!!! | TTGCAGAGATTTGGTTTTTT+TGG | - | chr1.1:4187068-4187087 | None:intergenic | 30.0% |
!!! | TTTATTTTTTGGGTTGGTGT+TGG | + | chr1.1:4187140-4187159 | MS.gene24445:intron | 30.0% |
AACTATTCCAAGGAATTTGG+AGG | + | chr1.1:4186716-4186735 | MS.gene24445:intron | 35.0% | |
ACACATTGTCATTAGCATCT+GGG | - | chr1.1:4187512-4187531 | None:intergenic | 35.0% | |
ACGGATCCATTATTCAATTC+GGG | + | chr1.1:4186792-4186811 | MS.gene24445:CDS | 35.0% | |
ACTATTCCAAGGAATTTGGA+GGG | + | chr1.1:4186717-4186736 | MS.gene24445:intron | 35.0% | |
AGTAAAGGAGAAGTTGCTTA+TGG | + | chr1.1:4188342-4188361 | MS.gene24445:CDS | 35.0% | |
CATCTATAAGTACACTTGTG+TGG | - | chr1.1:4187479-4187498 | None:intergenic | 35.0% | |
GCTTATGGATTTAACTGCAA+TGG | + | chr1.1:4188357-4188376 | MS.gene24445:CDS | 35.0% | |
GGGCTAATGAACAAAATGAT+TGG | + | chr1.1:4188102-4188121 | MS.gene24445:CDS | 35.0% | |
GGTGGAAAAGGAACAATTAA+GGG | - | chr1.1:4186531-4186550 | None:intergenic | 35.0% | |
GTACTTATAGATGTGTTGTG+TGG | + | chr1.1:4187486-4187505 | MS.gene24445:intron | 35.0% | |
GTCACTGTGACATTAAATCT+GGG | + | chr1.1:4187453-4187472 | MS.gene24445:intron | 35.0% | |
TAACTGCAATGGCATGTTTA+GGG | + | chr1.1:4188368-4188387 | MS.gene24445:CDS | 35.0% | |
TACTGTGGTTAAACCTGAAA+CGG | - | chr1.1:4186898-4186917 | None:intergenic | 35.0% | |
TGTCACTGTGACATTAAATC+TGG | + | chr1.1:4187452-4187471 | MS.gene24445:intron | 35.0% | |
TTAACTGCAATGGCATGTTT+AGG | + | chr1.1:4188367-4188386 | MS.gene24445:CDS | 35.0% | |
TTTCAGAAAAACACACACTC+TGG | - | chr1.1:4187593-4187612 | None:intergenic | 35.0% | |
TTTGATTATCGGATTCCATC+TGG | + | chr1.1:4187943-4187962 | MS.gene24445:CDS | 35.0% | |
! | AACAAAATGATTGGTCGGAT+TGG | + | chr1.1:4188111-4188130 | MS.gene24445:CDS | 35.0% |
! | AGGAAGTGTGGACAATATTA+TGG | - | chr1.1:4186473-4186492 | None:intergenic | 35.0% |
! | GGAAGTCCATTCATTTTCAT+TGG | - | chr1.1:4188000-4188019 | None:intergenic | 35.0% |
! | TACTTTGTACGGGTTAAAAG+TGG | + | chr1.1:4187400-4187419 | MS.gene24445:intron | 35.0% |
! | TGAAGATTTTGCTAGACAAC+AGG | + | chr1.1:4186989-4187008 | MS.gene24445:CDS | 35.0% |
!! | AATAATGGTAACGGTGGAAA+AGG | - | chr1.1:4186543-4186562 | None:intergenic | 35.0% |
!! | CTCATTGCTGTTTCTAGTAA+AGG | + | chr1.1:4188327-4188346 | MS.gene24445:CDS | 35.0% |
!! | GAGTGTGTGTTTTTCTGAAA+AGG | + | chr1.1:4187593-4187612 | MS.gene24445:intron | 35.0% |
!!! | TTACTTGTTTTTGTAGGGTG+TGG | + | chr1.1:4187252-4187271 | MS.gene24445:intron | 35.0% |
AACTGCAATGGCATGTTTAG+GGG | + | chr1.1:4188369-4188388 | MS.gene24445:CDS | 40.0% | |
AAGCATACCAACATTGTCAG+CGG | - | chr1.1:4187305-4187324 | None:intergenic | 40.0% | |
ACAAACAAATCGTAGCGACA+AGG | + | chr1.1:4186613-4186632 | MS.gene24445:intron | 40.0% | |
ACTAAACGAGCCAGTGAAAT+TGG | - | chr1.1:4186927-4186946 | None:intergenic | 40.0% | |
CAAACAAATCGTAGCGACAA+GGG | + | chr1.1:4186614-4186633 | MS.gene24445:intron | 40.0% | |
CAATGTTGGTATGCTTAAGC+TGG | + | chr1.1:4187309-4187328 | MS.gene24445:CDS | 40.0% | |
CACACATTGTCATTAGCATC+TGG | - | chr1.1:4187513-4187532 | None:intergenic | 40.0% | |
CGGTGGAAAAGGAACAATTA+AGG | - | chr1.1:4186532-4186551 | None:intergenic | 40.0% | |
CTTACTCGTGTTCTCAATCT+TGG | + | chr1.1:4186365-4186384 | MS.gene24445:CDS | 40.0% | |
CTTCTTCTTGACGTTGAAGA+GGG | - | chr1.1:4186334-4186353 | None:intergenic | 40.0% | |
GGTCCAAAGGGAAAATACTT+GGG | + | chr1.1:4187421-4187440 | MS.gene24445:intron | 40.0% | |
GTCACCGTGACATTTAATCT+GGG | - | chr1.1:4187544-4187563 | None:intergenic | 40.0% | |
GTGACCCAGATTAAATGTCA+CGG | + | chr1.1:4187537-4187556 | MS.gene24445:intron | 40.0% | |
GTGTGCTGCAGTTTGATTAT+CGG | + | chr1.1:4187932-4187951 | MS.gene24445:intron | 40.0% | |
GTTATTGAAGGTGAGGGAAT+TGG | + | chr1.1:4186767-4186786 | MS.gene24445:intron | 40.0% | |
GTTCATGGAGGTTGGAATTT+GGG | + | chr1.1:4188410-4188429 | MS.gene24445:CDS | 40.0% | |
TGGTCCAAAGGGAAAATACT+TGG | + | chr1.1:4187420-4187439 | MS.gene24445:intron | 40.0% | |
TGTCACCGTGACATTTAATC+TGG | - | chr1.1:4187545-4187564 | None:intergenic | 40.0% | |
TTTAAGGAAGACACACACGT+GGG | - | chr1.1:4187036-4187055 | None:intergenic | 40.0% | |
TTTATCACCGCTGACAATGT+TGG | + | chr1.1:4187295-4187314 | MS.gene24445:CDS | 40.0% | |
! | ATTGGTGACTCACCTTTGAT+AGG | + | chr1.1:4188129-4188148 | MS.gene24445:CDS | 40.0% |
! | GTGATGGAATACAAAGGTCT+TGG | + | chr1.1:4188246-4188265 | MS.gene24445:CDS | 40.0% |
! | TATGTCAACCAAGTGCTGTT+CGG | + | chr1.1:4187566-4187585 | MS.gene24445:intron | 40.0% |
! | TCACCCAAGTATTTTCCCTT+TGG | - | chr1.1:4187427-4187446 | None:intergenic | 40.0% |
!! | TTGGTGTTGGAACTTTGCTA+AGG | + | chr1.1:4187153-4187172 | MS.gene24445:intron | 40.0% |
AAAAGGAACGGTGGAAATGG+AGG | + | chr1.1:4186836-4186855 | MS.gene24445:CDS | 45.0% | |
AACATGTGTATGTGGGTACG+AGG | - | chr1.1:4186493-4186512 | None:intergenic | 45.0% | |
AACGTCGATGGCAGAAAGAT+TGG | - | chr1.1:4186408-4186427 | None:intergenic | 45.0% | |
ACAATGCCCTCCAAATTCCT+TGG | - | chr1.1:4186726-4186745 | None:intergenic | 45.0% | |
AGCGCCGTTAAAAGCAAGAT+AGG | - | chr1.1:4186970-4186989 | None:intergenic | 45.0% | |
CACAAGTTCAACAACGTCGA+TGG | - | chr1.1:4186420-4186439 | None:intergenic | 45.0% | |
CATCGACGTTGTTGAACTTG+TGG | + | chr1.1:4186418-4186437 | MS.gene24445:CDS | 45.0% | |
CCACATGTTTCGTATCCAGA+TGG | - | chr1.1:4187961-4187980 | None:intergenic | 45.0% | |
CCACGACCCGAATTGAATAA+TGG | - | chr1.1:4186801-4186820 | None:intergenic | 45.0% | |
CCATCTGGATACGAAACATG+TGG | + | chr1.1:4187958-4187977 | MS.gene24445:CDS | 45.0% | |
CCATTATTCAATTCGGGTCG+TGG | + | chr1.1:4186798-4186817 | MS.gene24445:CDS | 45.0% | |
CGGGTTAAAAGTGGTCCAAA+GGG | + | chr1.1:4187409-4187428 | MS.gene24445:intron | 45.0% | |
CGTTTGGATGAAGGATATGC+TGG | + | chr1.1:4188303-4188322 | MS.gene24445:CDS | 45.0% | |
GAAGGTGAGGGAATTGGAAA+CGG | + | chr1.1:4186773-4186792 | MS.gene24445:intron | 45.0% | |
GACGTTGAAGAGGGAGATTA+GGG | - | chr1.1:4186325-4186344 | None:intergenic | 45.0% | |
GATGGACCAAAAAGACGATG+CGG | + | chr1.1:4186870-4186889 | MS.gene24445:CDS | 45.0% | |
GCTTCTTCTTGACGTTGAAG+AGG | - | chr1.1:4186335-4186354 | None:intergenic | 45.0% | |
GGAAAAAGGAACGGTGGAAA+TGG | + | chr1.1:4186833-4186852 | MS.gene24445:CDS | 45.0% | |
GGAAATGGAGGCTAGCATAA+TGG | + | chr1.1:4186848-4186867 | MS.gene24445:CDS | 45.0% | |
GGTTCATGGAGGTTGGAATT+TGG | + | chr1.1:4188409-4188428 | MS.gene24445:CDS | 45.0% | |
GTTTAAGGAAGACACACACG+TGG | - | chr1.1:4187037-4187056 | None:intergenic | 45.0% | |
TATGATAGCCTCTCCTTCAC+CGG | - | chr1.1:4188196-4188215 | None:intergenic | 45.0% | |
TGACGTTGAAGAGGGAGATT+AGG | - | chr1.1:4186326-4186345 | None:intergenic | 45.0% | |
TGCCCTAACGGAAAAAGGAA+CGG | + | chr1.1:4186824-4186843 | MS.gene24445:CDS | 45.0% | |
TGGTATGCTTAAGCTGGCAA+AGG | + | chr1.1:4187315-4187334 | MS.gene24445:CDS | 45.0% | |
! | ACGGGTTAAAAGTGGTCCAA+AGG | + | chr1.1:4187408-4187427 | MS.gene24445:intron | 45.0% |
! | ATGGAGGCTAGCATAATGGA+TGG | + | chr1.1:4186852-4186871 | MS.gene24445:CDS | 45.0% |
! | CACCGTTCCTTTTTCCGTTA+GGG | - | chr1.1:4186829-4186848 | None:intergenic | 45.0% |
! | TCGGCTGTGATGGAATACAA+AGG | + | chr1.1:4188240-4188259 | MS.gene24445:CDS | 45.0% |
! | TCTTGGTCTTCAAGAAGCAG+TGG | + | chr1.1:4188263-4188282 | MS.gene24445:CDS | 45.0% |
!! | TTCACTGGCTCGTTTAGTCA+TGG | + | chr1.1:4186929-4186948 | MS.gene24445:CDS | 45.0% |
!!! | CTTGTTTTTGTAGGGTGTGG+AGG | + | chr1.1:4187255-4187274 | MS.gene24445:intron | 45.0% |
ACTCACCTTTGATAGGAGCC+GGG | + | chr1.1:4188136-4188155 | MS.gene24445:CDS | 50.0% | |
CCTAACGGAAAAAGGAACGG+TGG | + | chr1.1:4186827-4186846 | MS.gene24445:CDS | 50.0% | |
GAAGACACACACGTGGGAAT+AGG | - | chr1.1:4187030-4187049 | None:intergenic | 50.0% | |
GAAGGAGAGGCTATCATACG+TGG | + | chr1.1:4188198-4188217 | MS.gene24445:CDS | 50.0% | |
GACTCACCTTTGATAGGAGC+CGG | + | chr1.1:4188135-4188154 | MS.gene24445:CDS | 50.0% | |
GGATCTGCCCTAACGGAAAA+AGG | + | chr1.1:4186819-4186838 | MS.gene24445:CDS | 50.0% | |
GGCTATCATACGTGGCACTT+TGG | + | chr1.1:4188206-4188225 | MS.gene24445:CDS | 50.0% | |
GTCTACGCACCTGAAACAGT+CGG | + | chr1.1:4188027-4188046 | MS.gene24445:CDS | 50.0% | |
GTTTAGGGGATGTGCTTCTG+AGG | + | chr1.1:4188383-4188402 | MS.gene24445:CDS | 50.0% | |
TAGTTGTGGACCGTGAAGGA+AGG | + | chr1.1:4188055-4188074 | MS.gene24445:CDS | 50.0% | |
TATGTGGGTACGAGGAAGTG+TGG | - | chr1.1:4186485-4186504 | None:intergenic | 50.0% | |
TCAGGTGCGTAGACACTCAT+TGG | - | chr1.1:4188021-4188040 | None:intergenic | 50.0% | |
TCTACGCACCTGAAACAGTC+GGG | + | chr1.1:4188028-4188047 | MS.gene24445:CDS | 50.0% | |
TTTGTAGGGTGTGGAGGTTC+TGG | + | chr1.1:4187261-4187280 | MS.gene24445:intron | 50.0% | |
! | CCACCGTTCCTTTTTCCGTT+AGG | - | chr1.1:4186830-4186849 | None:intergenic | 50.0% |
! | TGCTTCTGAGGATGGGTTCA+TGG | + | chr1.1:4188395-4188414 | MS.gene24445:CDS | 50.0% |
! | TTCTGAGGATGGGTTCATGG+AGG | + | chr1.1:4188398-4188417 | MS.gene24445:CDS | 50.0% |
AACAGTCGGGTGCGTAGTTG+TGG | + | chr1.1:4188041-4188060 | MS.gene24445:CDS | 55.0% | |
AAGGTTACACGCGTAGGTCC+CGG | - | chr1.1:4188157-4188176 | None:intergenic | 55.0% | |
ACCTACGCGTGTAACCTTGC+TGG | + | chr1.1:4188159-4188178 | MS.gene24445:CDS | 55.0% | |
ACTACGCACCCGACTGTTTC+AGG | - | chr1.1:4188039-4188058 | None:intergenic | 55.0% | |
ACTCTGGACCGAACAGCACT+TGG | - | chr1.1:4187577-4187596 | None:intergenic | 55.0% | |
CAGCAGCACACCTTCCTTCA+CGG | - | chr1.1:4188068-4188087 | None:intergenic | 55.0% | |
GGTTGGGCAATTGCTGTGCA+TGG | + | chr1.1:4186284-4186303 | MS.gene24445:CDS | 55.0% | |
TAGGTCCCGGCTCCTATCAA+AGG | - | chr1.1:4188144-4188163 | None:intergenic | 55.0% | |
TGCGTAGTTGTGGACCGTGA+AGG | + | chr1.1:4188051-4188070 | MS.gene24445:CDS | 55.0% | |
TGGGCAATTGCTGTGCATGG+TGG | + | chr1.1:4186287-4186306 | MS.gene24445:CDS | 55.0% | |
! | ACGGCACCGCATCGTCTTTT+TGG | - | chr1.1:4186879-4186898 | None:intergenic | 55.0% |
! | AGGGGATGTGCTTCTGAGGA+TGG | + | chr1.1:4188387-4188406 | MS.gene24445:CDS | 55.0% |
! | ATTGCTGTGCATGGTGGTGC+TGG | + | chr1.1:4186293-4186312 | MS.gene24445:CDS | 55.0% |
! | GAGGATGGGTTCATGGAGGT+TGG | + | chr1.1:4188402-4188421 | MS.gene24445:CDS | 55.0% |
! | GGGGATGTGCTTCTGAGGAT+GGG | + | chr1.1:4188388-4188407 | MS.gene24445:CDS | 55.0% |
CATTAGCCCGCCTGTTGACG+TGG | - | chr1.1:4188091-4188110 | None:intergenic | 60.0% | |
CTTGCTGGCGTCTCATGCAC+CGG | + | chr1.1:4188174-4188193 | MS.gene24445:CDS | 60.0% | |
GCCAGCAAGGTTACACGCGT+AGG | - | chr1.1:4188163-4188182 | None:intergenic | 60.0% | |
GGGTCGTGGATCTGCCCTAA+CGG | + | chr1.1:4186812-4186831 | MS.gene24445:CDS | 60.0% | |
! | CACTTTGGCGCGAGAGGTGT+CGG | + | chr1.1:4188221-4188240 | MS.gene24445:CDS | 60.0% |
! | CTCATGCACCGGTGAAGGAG+AGG | + | chr1.1:4188185-4188204 | MS.gene24445:CDS | 60.0% |
! | TGTGCTGCTGCCACGTCAAC+AGG | + | chr1.1:4188078-4188097 | MS.gene24445:CDS | 60.0% |
!! | AGACGATGCGGTGCCGTTTC+AGG | + | chr1.1:4186882-4186901 | MS.gene24445:CDS | 60.0% |
ACGTGGCACTTTGGCGCGAG+AGG | + | chr1.1:4188215-4188234 | MS.gene24445:CDS | 65.0% | |
CGGTGCATGAGACGCCAGCA+AGG | - | chr1.1:4188176-4188195 | None:intergenic | 65.0% | |
CTGCTGCCACGTCAACAGGC+GGG | + | chr1.1:4188082-4188101 | MS.gene24445:CDS | 65.0% | |
GCTGCTGCCACGTCAACAGG+CGG | + | chr1.1:4188081-4188100 | MS.gene24445:CDS | 65.0% | |
! | GGCGTCTCATGCACCGGTGA+AGG | + | chr1.1:4188180-4188199 | MS.gene24445:CDS | 65.0% |
!! | GCGAGAGGTGTCGGCTGTGA+TGG | + | chr1.1:4188230-4188249 | MS.gene24445:CDS | 65.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr1.1 | gene | 4186278 | 4188437 | 4186278 | ID=MS.gene24445 |
chr1.1 | mRNA | 4186278 | 4188437 | 4186278 | ID=MS.gene24445.t1;Parent=MS.gene24445 |
chr1.1 | exon | 4186278 | 4186439 | 4186278 | ID=MS.gene24445.t1.exon1;Parent=MS.gene24445.t1 |
chr1.1 | CDS | 4186278 | 4186439 | 4186278 | ID=cds.MS.gene24445.t1;Parent=MS.gene24445.t1 |
chr1.1 | exon | 4186777 | 4187010 | 4186777 | ID=MS.gene24445.t1.exon2;Parent=MS.gene24445.t1 |
chr1.1 | CDS | 4186777 | 4187010 | 4186777 | ID=cds.MS.gene24445.t1;Parent=MS.gene24445.t1 |
chr1.1 | exon | 4187268 | 4187354 | 4187268 | ID=MS.gene24445.t1.exon3;Parent=MS.gene24445.t1 |
chr1.1 | CDS | 4187268 | 4187354 | 4187268 | ID=cds.MS.gene24445.t1;Parent=MS.gene24445.t1 |
chr1.1 | exon | 4187943 | 4188437 | 4187943 | ID=MS.gene24445.t1.exon4;Parent=MS.gene24445.t1 |
chr1.1 | CDS | 4187943 | 4188437 | 4187943 | ID=cds.MS.gene24445.t1;Parent=MS.gene24445.t1 |
Gene Sequence |
Protein sequence |