Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene38687.t1 | XP_003603098.1 | 97.2 | 322 | 9 | 0 | 1 | 322 | 1 | 322 | 1.40E-177 | 632.1 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene38687.t1 | Q8GXG1 | 84.6 | 325 | 47 | 1 | 1 | 322 | 1 | 325 | 8.1e-158 | 557.8 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene38687.t1 | G7J705 | 97.2 | 322 | 9 | 0 | 1 | 322 | 1 | 322 | 1.0e-177 | 632.1 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene04932 | MS.gene38687 | 0.815385 | 9.50E-52 | -1.69E-46 |
| MS.gene050380 | MS.gene38687 | 0.802916 | 4.47E-49 | -1.69E-46 |
| MS.gene050381 | MS.gene38687 | 0.802149 | 6.43E-49 | -1.69E-46 |
| MS.gene05104 | MS.gene38687 | 0.813978 | 1.95E-51 | -1.69E-46 |
| MS.gene051996 | MS.gene38687 | 0.813643 | 2.31E-51 | -1.69E-46 |
| MS.gene052211 | MS.gene38687 | 0.816781 | 4.63E-52 | -1.69E-46 |
| MS.gene05240 | MS.gene38687 | 0.835744 | 1.40E-56 | -1.69E-46 |
| MS.gene053406 | MS.gene38687 | 0.803367 | 3.61E-49 | -1.69E-46 |
| MS.gene054147 | MS.gene38687 | 0.8168 | 4.59E-52 | -1.69E-46 |
| MS.gene054277 | MS.gene38687 | 0.80065 | 1.30E-48 | -1.69E-46 |
| MS.gene054706 | MS.gene38687 | 0.805707 | 1.17E-49 | -1.69E-46 |
| MS.gene054742 | MS.gene38687 | 0.836618 | 8.42E-57 | -1.69E-46 |
| MS.gene055159 | MS.gene38687 | 0.80142 | 9.08E-49 | -1.69E-46 |
| MS.gene056076 | MS.gene38687 | 0.806891 | 6.60E-50 | -1.69E-46 |
| MS.gene056218 | MS.gene38687 | 0.810765 | 9.80E-51 | -1.69E-46 |
| MS.gene056330 | MS.gene38687 | 0.815028 | 1.14E-51 | -1.69E-46 |
| MS.gene056647 | MS.gene38687 | 0.800524 | 1.38E-48 | -1.69E-46 |
| MS.gene056688 | MS.gene38687 | 0.804052 | 2.60E-49 | -1.69E-46 |
| MS.gene056920 | MS.gene38687 | 0.810956 | 8.91E-51 | -1.69E-46 |
| MS.gene057293 | MS.gene38687 | 0.801711 | 7.92E-49 | -1.69E-46 |
| MS.gene057544 | MS.gene38687 | 0.812199 | 4.78E-51 | -1.69E-46 |
| MS.gene058157 | MS.gene38687 | -0.801334 | 9.46E-49 | -1.69E-46 |
| MS.gene058177 | MS.gene38687 | 0.806103 | 9.68E-50 | -1.69E-46 |
| MS.gene05837 | MS.gene38687 | -0.800447 | 1.44E-48 | -1.69E-46 |
| MS.gene059328 | MS.gene38687 | 0.802429 | 5.63E-49 | -1.69E-46 |
| MS.gene060087 | MS.gene38687 | 0.840624 | 7.77E-58 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene38687 | MS.gene038825 | PPI |
| MS.gene38687 | MS.gene044476 | PPI |
| MS.gene03345 | MS.gene38687 | PPI |
| MS.gene38687 | MS.gene063514 | PPI |
| MS.gene033042 | MS.gene38687 | PPI |
| MS.gene38687 | MS.gene044475 | PPI |
| MS.gene38687 | MS.gene038824 | PPI |
| MS.gene38687 | MS.gene033041 | PPI |
| MS.gene38687 | MS.gene063515 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene38687.t1 | MTR_3g102370 | 97.205 | 322 | 9 | 0 | 1 | 322 | 1 | 322 | 0.0 | 644 |
| MS.gene38687.t1 | MTR_1g094030 | 87.578 | 322 | 38 | 1 | 1 | 322 | 1 | 320 | 0.0 | 581 |
| MS.gene38687.t1 | MTR_1g018760 | 86.769 | 325 | 40 | 2 | 1 | 322 | 1 | 325 | 0.0 | 575 |
| MS.gene38687.t1 | MTR_4g109900 | 59.317 | 322 | 123 | 2 | 3 | 321 | 2 | 318 | 2.23e-131 | 377 |
| MS.gene38687.t1 | MTR_4g109920 | 58.385 | 322 | 127 | 3 | 3 | 321 | 2 | 319 | 1.81e-128 | 370 |
| MS.gene38687.t1 | MTR_8g031580 | 28.990 | 307 | 171 | 7 | 6 | 277 | 23 | 317 | 1.33e-25 | 105 |
| MS.gene38687.t1 | MTR_8g031580 | 28.990 | 307 | 171 | 7 | 6 | 277 | 23 | 317 | 4.38e-25 | 104 |
| MS.gene38687.t1 | MTR_3g008180 | 28.175 | 252 | 158 | 6 | 67 | 297 | 77 | 326 | 4.92e-16 | 78.2 |
| MS.gene38687.t1 | MTR_8g031580 | 26.201 | 229 | 124 | 6 | 85 | 278 | 1 | 219 | 2.35e-11 | 63.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene38687.t1 | AT3G16150 | 84.615 | 325 | 47 | 1 | 1 | 322 | 1 | 325 | 0.0 | 568 |
| MS.gene38687.t1 | AT5G08100 | 58.025 | 324 | 121 | 3 | 1 | 321 | 1 | 312 | 2.56e-128 | 369 |
| MS.gene38687.t1 | AT5G08100 | 57.377 | 244 | 90 | 2 | 80 | 321 | 1 | 232 | 1.46e-94 | 280 |
| MS.gene38687.t1 | AT4G00590 | 27.019 | 322 | 174 | 8 | 6 | 282 | 15 | 320 | 2.37e-20 | 91.3 |
| MS.gene38687.t1 | AT5G61540 | 28.947 | 266 | 150 | 9 | 67 | 300 | 80 | 338 | 1.42e-17 | 82.8 |
| MS.gene38687.t1 | AT4G00590 | 26.282 | 312 | 174 | 8 | 6 | 282 | 15 | 305 | 9.17e-17 | 80.9 |
| MS.gene38687.t1 | AT5G61540 | 29.167 | 240 | 131 | 9 | 93 | 300 | 4 | 236 | 9.23e-15 | 73.6 |
| MS.gene38687.t1 | AT5G61540 | 29.167 | 240 | 131 | 9 | 93 | 300 | 4 | 236 | 9.23e-15 | 73.6 |
Find 90 sgRNAs with CRISPR-Local
Find 121 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GGTTCATGGAGGTTGGAATT+TGG | 0.172718 | 3.3:+84609808 | MS.gene38687:CDS |
| GTTCATGGAGGTTGGAATTT+GGG | 0.266618 | 3.3:+84609809 | MS.gene38687:CDS |
| TCAATTGTAATGGAATGTTT+AGG | 0.266625 | 3.3:+84609766 | MS.gene38687:CDS |
| TCTTATTGCTGTGTCTAATA+AGG | 0.277779 | 3.3:+84609725 | MS.gene38687:CDS |
| GCTTCTTCCTGACGGTGTTT+TGG | 0.278911 | 3.3:-84608499 | None:intergenic |
| CAATTGTAATGGAATGTTTA+GGG | 0.287602 | 3.3:+84609767 | MS.gene38687:CDS |
| AATAAGGGTGAAGTGGCTTA+TGG | 0.294879 | 3.3:+84609741 | MS.gene38687:CDS |
| CGTCTTGATGAAGGGTTTGC+TGG | 0.320904 | 3.3:+84609702 | MS.gene38687:CDS |
| GGTTGGGCTATTGCTGTTCA+TGG | 0.339677 | 3.3:+84608451 | MS.gene38687:CDS |
| TGTGCTGCTGCAACCTCAAC+TGG | 0.368919 | 3.3:+84609477 | MS.gene38687:CDS |
| AAAGGAAGCTAATACAATAT+TGG | 0.379155 | 3.3:+84609219 | MS.gene38687:CDS |
| AGAAGATGTGGTGCTGTATC+TGG | 0.390803 | 3.3:+84608935 | MS.gene38687:CDS |
| TTTCAGCATACCAACATTAT+CGG | 0.395803 | 3.3:-84609191 | None:intergenic |
| AGGGGATGTGCAACTGAGAA+TGG | 0.403815 | 3.3:+84609786 | MS.gene38687:CDS |
| ATAAGGGTGAAGTGGCTTAT+GGG | 0.407004 | 3.3:+84609742 | MS.gene38687:CDS |
| ATTGCTGTTCATGGCGGCGC+TGG | 0.414973 | 3.3:+84608460 | MS.gene38687:CDS |
| AGCAAAAGGAACGGTGGAAA+TGG | 0.416209 | 3.3:+84608886 | MS.gene38687:CDS |
| ACATTCGGTAAGAAGCTGTT+TGG | 0.418583 | 3.3:-84608521 | None:intergenic |
| GCTTATGGGTTCAATTGTAA+TGG | 0.420402 | 3.3:+84609756 | MS.gene38687:CDS |
| CTTACCGAATGTCTCAATCT+TGG | 0.425909 | 3.3:+84608532 | MS.gene38687:CDS |
| CATTCTTACCTCGCCTTCTC+CGG | 0.431764 | 3.3:+84609016 | MS.gene38687:CDS |
| CTTATTGCTGTGTCTAATAA+GGG | 0.432612 | 3.3:+84609726 | MS.gene38687:CDS |
| ACAAGACGAGCAAGAGAGAT+TGG | 0.433669 | 3.3:-84608977 | None:intergenic |
| TTCAGCATACCAACATTATC+GGG | 0.458771 | 3.3:-84609190 | None:intergenic |
| GGATCTGCTCTGACAGCAAA+AGG | 0.463031 | 3.3:+84608872 | MS.gene38687:CDS |
| ATTAAGCATCGTCTTGATGA+AGG | 0.463221 | 3.3:+84609693 | MS.gene38687:CDS |
| AACAAAATGAGTGGTCGAAT+CGG | 0.464428 | 3.3:+84609510 | MS.gene38687:CDS |
| AGAAGAATTTGCTAGGGAAC+AGG | 0.465537 | 3.3:+84609042 | MS.gene38687:CDS |
| GACGTCGAGTGCGGAAGCAT+TGG | 0.472505 | 3.3:-84608572 | None:intergenic |
| TGCAACTGAGAATGGGTTCA+TGG | 0.477091 | 3.3:+84609794 | MS.gene38687:CDS |
| ACCACACATCCGACGGTCTC+CGG | 0.480495 | 3.3:-84609435 | None:intergenic |
| CTCTCTTGCTCGTCTTGTCA+TGG | 0.483008 | 3.3:+84608982 | MS.gene38687:CDS |
| ACGTGAAGTGGCTGCAGTTA+TGG | 0.491646 | 3.3:+84609629 | MS.gene38687:CDS |
| AAATTCTTCTGCACCGGAGA+AGG | 0.500532 | 3.3:-84609029 | None:intergenic |
| TAATCTTCCAAAACACCGTC+AGG | 0.500540 | 3.3:+84608492 | MS.gene38687:CDS |
| GAGAATGGGTTCATGGAGGT+TGG | 0.502391 | 3.3:+84609801 | MS.gene38687:CDS |
| ATCGGTGATTCACCTCTCAT+AGG | 0.503828 | 3.3:+84609528 | MS.gene38687:CDS |
| GTTCATTAGCCCTCCAGTTG+AGG | 0.507804 | 3.3:-84609490 | None:intergenic |
| GATAGTCCAGTGAAAATGAA+TGG | 0.507847 | 3.3:+84609390 | MS.gene38687:CDS |
| GATTCACCTCTCATAGGTGC+TGG | 0.508182 | 3.3:+84609534 | MS.gene38687:CDS |
| CCTAGCAAATTCTTCTGCAC+CGG | 0.509592 | 3.3:-84609035 | None:intergenic |
| GTGTGTGGAGTTTCTTGCAC+TGG | 0.514229 | 3.3:+84609573 | MS.gene38687:CDS |
| GGGGATGTGCAACTGAGAAT+GGG | 0.515436 | 3.3:+84609787 | MS.gene38687:CDS |
| GGAGTTTCTTGCACTGGTGA+AGG | 0.536295 | 3.3:+84609579 | MS.gene38687:CDS |
| GGAAATGGAGGCTAGTATCA+TGG | 0.537266 | 3.3:+84608901 | MS.gene38687:CDS |
| GATACCAAGATTGAGACATT+CGG | 0.538052 | 3.3:-84608536 | None:intergenic |
| CCGGTGCAGAAGAATTTGCT+AGG | 0.539891 | 3.3:+84609035 | MS.gene38687:CDS |
| GACCGTCGGATGTGTGGTGG+TGG | 0.541481 | 3.3:+84609440 | MS.gene38687:CDS |
| GTTATGGAGTACAAAGGCTA+TGG | 0.546040 | 3.3:+84609645 | MS.gene38687:CDS |
| GCTGTTTGGCTTCTTCCTGA+CGG | 0.552502 | 3.3:-84608507 | None:intergenic |
| TGGCACTCTTGCACGTGAAG+TGG | 0.556232 | 3.3:+84609617 | MS.gene38687:CDS |
| TTCATCACTCCCGATAATGT+TGG | 0.557667 | 3.3:+84609181 | MS.gene38687:CDS |
| AATTGTAATGGAATGTTTAG+GGG | 0.558475 | 3.3:+84609768 | MS.gene38687:CDS |
| GAGAAGGCGAGGTAAGAATG+AGG | 0.562126 | 3.3:-84609013 | None:intergenic |
| CTATGGACTTCAACAAGCTG+TGG | 0.581002 | 3.3:+84609662 | MS.gene38687:CDS |
| GTTTGATTATCGAATTCCAA+CGG | 0.581762 | 3.3:+84609350 | MS.gene38687:intron |
| GCCGGAGACCGTCGGATGTG+TGG | 0.582295 | 3.3:+84609434 | MS.gene38687:CDS |
| GAAGGTGAAGCTATCATTCG+TGG | 0.583136 | 3.3:+84609597 | MS.gene38687:CDS |
| TGTTCATGGCGGCGCTGGTG+TGG | 0.585081 | 3.3:+84608465 | MS.gene38687:CDS |
| GCCGATGAGCATTTACGCGC+CGG | 0.592527 | 3.3:+84609416 | MS.gene38687:CDS |
| AGAAGGCGAGGTAAGAATGA+GGG | 0.593655 | 3.3:-84609012 | None:intergenic |
| CCACGGCCAGAATTGAAAAG+TGG | 0.595287 | 3.3:-84608851 | None:intergenic |
| TTAAGCATCGTCTTGATGAA+GGG | 0.596066 | 3.3:+84609694 | MS.gene38687:CDS |
| TTGCTGTCAGAGCAGATCCA+CGG | 0.605965 | 3.3:-84608868 | None:intergenic |
| GCTGCTGCAACCTCAACTGG+AGG | 0.606206 | 3.3:+84609480 | MS.gene38687:CDS |
| TGCTCTGACAGCAAAAGGAA+CGG | 0.607232 | 3.3:+84608877 | MS.gene38687:CDS |
| TTTCTAGGGCGTGGAGACTG+AGG | 0.612061 | 3.3:+84609147 | MS.gene38687:intron |
| GTCCACCACCACACATCCGA+CGG | 0.619811 | 3.3:-84609442 | None:intergenic |
| TGTGTCTAATAAGGGTGAAG+TGG | 0.621047 | 3.3:+84609734 | MS.gene38687:CDS |
| AAAAGGAACGGTGGAAATGG+AGG | 0.622339 | 3.3:+84608889 | MS.gene38687:CDS |
| CGGTGCAGAAGAATTTGCTA+GGG | 0.622722 | 3.3:+84609036 | MS.gene38687:CDS |
| CTGCTGCAACCTCAACTGGA+GGG | 0.626492 | 3.3:+84609481 | MS.gene38687:CDS |
| GAAGGCGAGGTAAGAATGAG+GGG | 0.630197 | 3.3:-84609011 | None:intergenic |
| ATTTACGCGCCGGAGACCGT+CGG | 0.633728 | 3.3:+84609426 | MS.gene38687:CDS |
| ATGGAGGCTAGTATCATGGA+TGG | 0.635651 | 3.3:+84608905 | MS.gene38687:CDS |
| TCCGGCGCGTAAATGCTCAT+CGG | 0.640097 | 3.3:-84609417 | None:intergenic |
| AAGTTCGACGACGTCGAGTG+CGG | 0.645430 | 3.3:-84608581 | None:intergenic |
| CGAGTGCGGAAGCATTGGAT+CGG | 0.648150 | 3.3:-84608567 | None:intergenic |
| TAAGTTCCAGCACCTATGAG+AGG | 0.650295 | 3.3:-84609540 | None:intergenic |
| CTTCTGCACCGGAGAAGGCG+AGG | 0.656386 | 3.3:-84609024 | None:intergenic |
| GGAGACCGTCGGATGTGTGG+TGG | 0.674288 | 3.3:+84609437 | MS.gene38687:CDS |
| GATGGTAACAAGAGAAGATG+TGG | 0.682088 | 3.3:+84608923 | MS.gene38687:CDS |
| TGGTATGCTGAAACTCGCAA+AGG | 0.682548 | 3.3:+84609201 | MS.gene38687:CDS |
| TGGGCTATTGCTGTTCATGG+CGG | 0.684758 | 3.3:+84608454 | MS.gene38687:CDS |
| GCTGCAGTTATGGAGTACAA+AGG | 0.689411 | 3.3:+84609639 | MS.gene38687:CDS |
| ACTTATGCATGTGAAGTGTG+TGG | 0.696667 | 3.3:+84609558 | MS.gene38687:CDS |
| GGGCTAATGAACAAAATGAG+TGG | 0.699843 | 3.3:+84609501 | MS.gene38687:CDS |
| TCTGACAGCAAAAGGAACGG+TGG | 0.711989 | 3.3:+84608880 | MS.gene38687:CDS |
| TGTGTGGTGGTGGACAGTCA+AGG | 0.729603 | 3.3:+84609450 | MS.gene38687:CDS |
| AACTGAGAATGGGTTCATGG+AGG | 0.788867 | 3.3:+84609797 | MS.gene38687:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATATTTATAGATCAAAAAT+TGG | - | chr3.3:84609095-84609114 | None:intergenic | 10.0% |
| !! | ATTTATATCATTCATAATCA+TGG | + | chr3.3:84608653-84608672 | MS.gene38687:intron | 15.0% |
| !! | GATTATGAATGATATAAATT+AGG | - | chr3.3:84608652-84608671 | None:intergenic | 15.0% |
| !! | TTTATATCATTCATAATCAT+GGG | + | chr3.3:84608654-84608673 | MS.gene38687:intron | 15.0% |
| !!! | GTTTTTAATCAAAAGATATT+TGG | + | chr3.3:84609116-84609135 | MS.gene38687:intron | 15.0% |
| !! | AAATTAGGTTAGGTTTATTA+CGG | - | chr3.3:84608637-84608656 | None:intergenic | 20.0% |
| !! | AAATTATATTATTGTCATCG+TGG | - | chr3.3:84608738-84608757 | None:intergenic | 20.0% |
| !! | TGAATGATATAAATTAGGTT+AGG | - | chr3.3:84608647-84608666 | None:intergenic | 20.0% |
| !! | TTATTAATGAATGTGTTTGA+TGG | + | chr3.3:84609316-84609335 | MS.gene38687:intron | 20.0% |
| !!! | TTCTGTTTTTGTTGATTTTA+GGG | + | chr3.3:84608792-84608811 | MS.gene38687:intron | 20.0% |
| !!! | TTTCTGTTTTTGTTGATTTT+AGG | + | chr3.3:84608791-84608810 | MS.gene38687:intron | 20.0% |
| ! | AAAGGAAGCTAATACAATAT+TGG | + | chr3.3:84609219-84609238 | MS.gene38687:CDS | 25.0% |
| ! | AACTATAGATTCGAAAATAC+CGG | - | chr3.3:84608767-84608786 | None:intergenic | 25.0% |
| ! | TCACTTGTGTAATTAAAATG+TGG | + | chr3.3:84609278-84609297 | MS.gene38687:intron | 25.0% |
| !! | AATTGTAATGGAATGTTTAG+GGG | + | chr3.3:84609768-84609787 | MS.gene38687:CDS | 25.0% |
| !! | CAATTGTAATGGAATGTTTA+GGG | + | chr3.3:84609767-84609786 | MS.gene38687:CDS | 25.0% |
| !! | TCAATTGTAATGGAATGTTT+AGG | + | chr3.3:84609766-84609785 | MS.gene38687:CDS | 25.0% |
| !!! | ATTTGGTCATGTTTTTTCTA+GGG | + | chr3.3:84609133-84609152 | MS.gene38687:intron | 25.0% |
| !!! | TATTTGGTCATGTTTTTTCT+AGG | + | chr3.3:84609132-84609151 | MS.gene38687:intron | 25.0% |
| !!! | TTTAGGGTTCTTTTTTTGAT+AGG | + | chr3.3:84608808-84608827 | MS.gene38687:intron | 25.0% |
| CTTATTGCTGTGTCTAATAA+GGG | + | chr3.3:84609726-84609745 | MS.gene38687:CDS | 30.0% | |
| GTTTGATTATCGAATTCCAA+CGG | + | chr3.3:84609350-84609369 | MS.gene38687:intron | 30.0% | |
| TAATGAATGTGTTTGATGGA+CGG | + | chr3.3:84609320-84609339 | MS.gene38687:intron | 30.0% | |
| TCATTCATAATCATGGGAAA+AGG | + | chr3.3:84608660-84608679 | MS.gene38687:intron | 30.0% | |
| TCTTATTGCTGTGTCTAATA+AGG | + | chr3.3:84609725-84609744 | MS.gene38687:CDS | 30.0% | |
| TTTCAGCATACCAACATTAT+CGG | - | chr3.3:84609194-84609213 | None:intergenic | 30.0% | |
| ! | AAGAGAGATTGGATTTTTCA+CGG | - | chr3.3:84608969-84608988 | None:intergenic | 30.0% |
| AACAAAATGAGTGGTCGAAT+CGG | + | chr3.3:84609510-84609529 | MS.gene38687:CDS | 35.0% | |
| GATACCAAGATTGAGACATT+CGG | - | chr3.3:84608539-84608558 | None:intergenic | 35.0% | |
| GATAGTCCAGTGAAAATGAA+TGG | + | chr3.3:84609390-84609409 | MS.gene38687:CDS | 35.0% | |
| GCTTATGGGTTCAATTGTAA+TGG | + | chr3.3:84609756-84609775 | MS.gene38687:CDS | 35.0% | |
| GTTTATTACGGAAGAGACAT+GGG | - | chr3.3:84608625-84608644 | None:intergenic | 35.0% | |
| TTCAGCATACCAACATTATC+GGG | - | chr3.3:84609193-84609212 | None:intergenic | 35.0% | |
| ! | ATTAAGCATCGTCTTGATGA+AGG | + | chr3.3:84609693-84609712 | MS.gene38687:CDS | 35.0% |
| ! | TTAAGCATCGTCTTGATGAA+GGG | + | chr3.3:84609694-84609713 | MS.gene38687:CDS | 35.0% |
| !! | ACAGATCCACTTTTCAATTC+TGG | + | chr3.3:84608845-84608864 | MS.gene38687:CDS | 35.0% |
| AATAAGGGTGAAGTGGCTTA+TGG | + | chr3.3:84609741-84609760 | MS.gene38687:CDS | 40.0% | |
| ACATTCGGTAAGAAGCTGTT+TGG | - | chr3.3:84608524-84608543 | None:intergenic | 40.0% | |
| ACTTATGCATGTGAAGTGTG+TGG | + | chr3.3:84609558-84609577 | MS.gene38687:CDS | 40.0% | |
| ATAAGGGTGAAGTGGCTTAT+GGG | + | chr3.3:84609742-84609761 | MS.gene38687:CDS | 40.0% | |
| ATTCCAACGGAAAAATGTGC+TGG | + | chr3.3:84609363-84609382 | MS.gene38687:CDS | 40.0% | |
| CTTACCGAATGTCTCAATCT+TGG | + | chr3.3:84608532-84608551 | MS.gene38687:CDS | 40.0% | |
| GATGGTAACAAGAGAAGATG+TGG | + | chr3.3:84608923-84608942 | MS.gene38687:CDS | 40.0% | |
| GGGCTAATGAACAAAATGAG+TGG | + | chr3.3:84609501-84609520 | MS.gene38687:CDS | 40.0% | |
| GGTTTATTACGGAAGAGACA+TGG | - | chr3.3:84608626-84608645 | None:intergenic | 40.0% | |
| GTTATGGAGTACAAAGGCTA+TGG | + | chr3.3:84609645-84609664 | MS.gene38687:CDS | 40.0% | |
| GTTCATGGAGGTTGGAATTT+GGG | + | chr3.3:84609809-84609828 | MS.gene38687:CDS | 40.0% | |
| TAATCTTCCAAAACACCGTC+AGG | + | chr3.3:84608492-84608511 | MS.gene38687:CDS | 40.0% | |
| TGTGTCTAATAAGGGTGAAG+TGG | + | chr3.3:84609734-84609753 | MS.gene38687:CDS | 40.0% | |
| TTCATCACTCCCGATAATGT+TGG | + | chr3.3:84609181-84609200 | MS.gene38687:CDS | 40.0% | |
| ! | AGAGATTGGATTTTTCACGG+TGG | - | chr3.3:84608966-84608985 | None:intergenic | 40.0% |
| !! | AGAAGAATTTGCTAGGGAAC+AGG | + | chr3.3:84609042-84609061 | MS.gene38687:CDS | 40.0% |
| !!! | TGACGGTGTTTTGGAAGATT+AGG | - | chr3.3:84608493-84608512 | None:intergenic | 40.0% |
| AAAAGGAACGGTGGAAATGG+AGG | + | chr3.3:84608889-84608908 | MS.gene38687:CDS | 45.0% | |
| AAATTCTTCTGCACCGGAGA+AGG | - | chr3.3:84609032-84609051 | None:intergenic | 45.0% | |
| ACAAGACGAGCAAGAGAGAT+TGG | - | chr3.3:84608980-84608999 | None:intergenic | 45.0% | |
| AGAAGGCGAGGTAAGAATGA+GGG | - | chr3.3:84609015-84609034 | None:intergenic | 45.0% | |
| AGCAAAAGGAACGGTGGAAA+TGG | + | chr3.3:84608886-84608905 | MS.gene38687:CDS | 45.0% | |
| ATCGGTGATTCACCTCTCAT+AGG | + | chr3.3:84609528-84609547 | MS.gene38687:CDS | 45.0% | |
| ATGGAGGCTAGTATCATGGA+TGG | + | chr3.3:84608905-84608924 | MS.gene38687:CDS | 45.0% | |
| CCTAGCAAATTCTTCTGCAC+CGG | - | chr3.3:84609038-84609057 | None:intergenic | 45.0% | |
| CTATGGACTTCAACAAGCTG+TGG | + | chr3.3:84609662-84609681 | MS.gene38687:CDS | 45.0% | |
| GAAGGTGAAGCTATCATTCG+TGG | + | chr3.3:84609597-84609616 | MS.gene38687:CDS | 45.0% | |
| GCTGCAGTTATGGAGTACAA+AGG | + | chr3.3:84609639-84609658 | MS.gene38687:CDS | 45.0% | |
| GGAAATGGAGGCTAGTATCA+TGG | + | chr3.3:84608901-84608920 | MS.gene38687:CDS | 45.0% | |
| GGTTCATGGAGGTTGGAATT+TGG | + | chr3.3:84609808-84609827 | MS.gene38687:CDS | 45.0% | |
| TAAGTTCCAGCACCTATGAG+AGG | - | chr3.3:84609543-84609562 | None:intergenic | 45.0% | |
| TGCTCTGACAGCAAAAGGAA+CGG | + | chr3.3:84608877-84608896 | MS.gene38687:CDS | 45.0% | |
| TGGTATGCTGAAACTCGCAA+AGG | + | chr3.3:84609201-84609220 | MS.gene38687:CDS | 45.0% | |
| ! | AACTGAGAATGGGTTCATGG+AGG | + | chr3.3:84609797-84609816 | MS.gene38687:CDS | 45.0% |
| ! | GGCAGACCATTCATTTTCAC+TGG | - | chr3.3:84609399-84609418 | None:intergenic | 45.0% |
| ! | GTTCCAGCACATTTTTCCGT+TGG | - | chr3.3:84609369-84609388 | None:intergenic | 45.0% |
| ! | TGAATGTGTTTGATGGACGG+TGG | + | chr3.3:84609323-84609342 | MS.gene38687:intron | 45.0% |
| ! | TGCAACTGAGAATGGGTTCA+TGG | + | chr3.3:84609794-84609813 | MS.gene38687:CDS | 45.0% |
| !! | AGAAGATGTGGTGCTGTATC+TGG | + | chr3.3:84608935-84608954 | MS.gene38687:CDS | 45.0% |
| !! | CGGTGCAGAAGAATTTGCTA+GGG | + | chr3.3:84609036-84609055 | MS.gene38687:CDS | 45.0% |
| !!! | GTCATGTTTTTTCTAGGGCG+TGG | + | chr3.3:84609138-84609157 | MS.gene38687:intron | 45.0% |
| !!! | AATAATATAATTTTTTAATC+CGG | + | chr3.3:84608745-84608764 | MS.gene38687:intron | 5.0% |
| ACGTGAAGTGGCTGCAGTTA+TGG | + | chr3.3:84609629-84609648 | MS.gene38687:CDS | 50.0% | |
| AGGGGATGTGCAACTGAGAA+TGG | + | chr3.3:84609786-84609805 | MS.gene38687:CDS | 50.0% | |
| CATTCTTACCTCGCCTTCTC+CGG | + | chr3.3:84609016-84609035 | MS.gene38687:CDS | 50.0% | |
| CCACGGCCAGAATTGAAAAG+TGG | - | chr3.3:84608854-84608873 | None:intergenic | 50.0% | |
| CGTCTTGATGAAGGGTTTGC+TGG | + | chr3.3:84609702-84609721 | MS.gene38687:CDS | 50.0% | |
| CTCTCTTGCTCGTCTTGTCA+TGG | + | chr3.3:84608982-84609001 | MS.gene38687:CDS | 50.0% | |
| GAAGGCGAGGTAAGAATGAG+GGG | - | chr3.3:84609014-84609033 | None:intergenic | 50.0% | |
| GAGAAGGCGAGGTAAGAATG+AGG | - | chr3.3:84609016-84609035 | None:intergenic | 50.0% | |
| GATTCACCTCTCATAGGTGC+TGG | + | chr3.3:84609534-84609553 | MS.gene38687:CDS | 50.0% | |
| GGATCTGCTCTGACAGCAAA+AGG | + | chr3.3:84608872-84608891 | MS.gene38687:CDS | 50.0% | |
| GGGGATGTGCAACTGAGAAT+GGG | + | chr3.3:84609787-84609806 | MS.gene38687:CDS | 50.0% | |
| GTGTGTGGAGTTTCTTGCAC+TGG | + | chr3.3:84609573-84609592 | MS.gene38687:CDS | 50.0% | |
| GTTCATTAGCCCTCCAGTTG+AGG | - | chr3.3:84609493-84609512 | None:intergenic | 50.0% | |
| TCTGACAGCAAAAGGAACGG+TGG | + | chr3.3:84608880-84608899 | MS.gene38687:CDS | 50.0% | |
| TTGCTGTCAGAGCAGATCCA+CGG | - | chr3.3:84608871-84608890 | None:intergenic | 50.0% | |
| ! | CCGGTGCAGAAGAATTTGCT+AGG | + | chr3.3:84609035-84609054 | MS.gene38687:CDS | 50.0% |
| ! | GAGAATGGGTTCATGGAGGT+TGG | + | chr3.3:84609801-84609820 | MS.gene38687:CDS | 50.0% |
| ! | GCTGTTTGGCTTCTTCCTGA+CGG | - | chr3.3:84608510-84608529 | None:intergenic | 50.0% |
| ! | GCTTCTTCCTGACGGTGTTT+TGG | - | chr3.3:84608502-84608521 | None:intergenic | 50.0% |
| ! | GGAGTTTCTTGCACTGGTGA+AGG | + | chr3.3:84609579-84609598 | MS.gene38687:CDS | 50.0% |
| ! | GGTTGGGCTATTGCTGTTCA+TGG | + | chr3.3:84608451-84608470 | MS.gene38687:CDS | 50.0% |
| ! | TGGGCTATTGCTGTTCATGG+CGG | + | chr3.3:84608454-84608473 | MS.gene38687:CDS | 50.0% |
| !! | CCACTTTTCAATTCTGGCCG+TGG | + | chr3.3:84608851-84608870 | MS.gene38687:CDS | 50.0% |
| AAGTTCGACGACGTCGAGTG+CGG | - | chr3.3:84608584-84608603 | None:intergenic | 55.0% | |
| CTGCTGCAACCTCAACTGGA+GGG | + | chr3.3:84609481-84609500 | MS.gene38687:CDS | 55.0% | |
| TCCGGCGCGTAAATGCTCAT+CGG | - | chr3.3:84609420-84609439 | None:intergenic | 55.0% | |
| TGGCACTCTTGCACGTGAAG+TGG | + | chr3.3:84609617-84609636 | MS.gene38687:CDS | 55.0% | |
| ! | TGTGCTGCTGCAACCTCAAC+TGG | + | chr3.3:84609477-84609496 | MS.gene38687:CDS | 55.0% |
| !! | CGAGTGCGGAAGCATTGGAT+CGG | - | chr3.3:84608570-84608589 | None:intergenic | 55.0% |
| !! | TGTGTGGTGGTGGACAGTCA+AGG | + | chr3.3:84609450-84609469 | MS.gene38687:CDS | 55.0% |
| !! | TTTCTAGGGCGTGGAGACTG+AGG | + | chr3.3:84609147-84609166 | MS.gene38687:intron | 55.0% |
| ACCACACATCCGACGGTCTC+CGG | - | chr3.3:84609438-84609457 | None:intergenic | 60.0% | |
| ATTTACGCGCCGGAGACCGT+CGG | + | chr3.3:84609426-84609445 | MS.gene38687:CDS | 60.0% | |
| GCCGATGAGCATTTACGCGC+CGG | + | chr3.3:84609416-84609435 | MS.gene38687:CDS | 60.0% | |
| GCTGCTGCAACCTCAACTGG+AGG | + | chr3.3:84609480-84609499 | MS.gene38687:CDS | 60.0% | |
| GTCCACCACCACACATCCGA+CGG | - | chr3.3:84609445-84609464 | None:intergenic | 60.0% | |
| ! | ATTGCTGTTCATGGCGGCGC+TGG | + | chr3.3:84608460-84608479 | MS.gene38687:CDS | 60.0% |
| ! | GACGTCGAGTGCGGAAGCAT+TGG | - | chr3.3:84608575-84608594 | None:intergenic | 60.0% |
| CTTCTGCACCGGAGAAGGCG+AGG | - | chr3.3:84609027-84609046 | None:intergenic | 65.0% | |
| GACCGTCGGATGTGTGGTGG+TGG | + | chr3.3:84609440-84609459 | MS.gene38687:CDS | 65.0% | |
| GGAGACCGTCGGATGTGTGG+TGG | + | chr3.3:84609437-84609456 | MS.gene38687:CDS | 65.0% | |
| !! | TGTTCATGGCGGCGCTGGTG+TGG | + | chr3.3:84608465-84608484 | MS.gene38687:CDS | 65.0% |
| GCCGGAGACCGTCGGATGTG+TGG | + | chr3.3:84609434-84609453 | MS.gene38687:CDS | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.3 | gene | 84608445 | 84609836 | 84608445 | ID=MS.gene38687 |
| chr3.3 | mRNA | 84608445 | 84609836 | 84608445 | ID=MS.gene38687.t1;Parent=MS.gene38687 |
| chr3.3 | exon | 84608445 | 84608606 | 84608445 | ID=MS.gene38687.t1.exon1;Parent=MS.gene38687.t1 |
| chr3.3 | CDS | 84608445 | 84608606 | 84608445 | ID=cds.MS.gene38687.t1;Parent=MS.gene38687.t1 |
| chr3.3 | exon | 84608830 | 84609063 | 84608830 | ID=MS.gene38687.t1.exon2;Parent=MS.gene38687.t1 |
| chr3.3 | CDS | 84608830 | 84609063 | 84608830 | ID=cds.MS.gene38687.t1;Parent=MS.gene38687.t1 |
| chr3.3 | exon | 84609154 | 84609240 | 84609154 | ID=MS.gene38687.t1.exon3;Parent=MS.gene38687.t1 |
| chr3.3 | CDS | 84609154 | 84609240 | 84609154 | ID=cds.MS.gene38687.t1;Parent=MS.gene38687.t1 |
| chr3.3 | exon | 84609351 | 84609836 | 84609351 | ID=MS.gene38687.t1.exon4;Parent=MS.gene38687.t1 |
| chr3.3 | CDS | 84609351 | 84609836 | 84609351 | ID=cds.MS.gene38687.t1;Parent=MS.gene38687.t1 |
| Gene Sequence |
| Protein sequence |
