AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene034756

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene034756.t1 MTR_1g056910 96.552 406 14 0 1 406 1 406 0.0 810
MS.gene034756.t1 MTR_4g051515 45.432 405 212 7 1 398 1 403 1.19e-112 336
MS.gene034756.t1 MTR_7g106340 42.926 417 221 7 2 405 4 416 9.16e-108 324
MS.gene034756.t1 MTR_1g056880 40.421 428 219 8 3 399 4 426 8.26e-102 309
MS.gene034756.t1 MTR_1g056870 39.953 428 221 8 3 399 4 426 4.81e-99 302
MS.gene034756.t1 MTR_2g087350 44.691 405 208 9 1 399 1 395 8.23e-97 295
MS.gene034756.t1 MTR_1g056840 37.383 428 206 10 3 399 4 400 3.04e-86 268
MS.gene034756.t1 MTR_5g077510 31.579 418 253 13 3 403 32 433 7.37e-52 180
MS.gene034756.t1 MTR_3g065080 31.500 400 246 13 1 386 31 416 1.03e-43 158
MS.gene034756.t1 MTR_6g071340 30.446 404 250 11 3 386 2 394 2.63e-41 151
MS.gene034756.t1 MTR_5g048050 29.950 404 252 11 3 386 22 414 1.26e-40 149
MS.gene034756.t1 MTR_4g085720 30.203 394 258 11 4 392 12 393 9.47e-39 144
MS.gene034756.t1 MTR_8g092870 27.561 410 259 13 4 390 8 402 9.19e-26 108
MS.gene034756.t1 MTR_5g015210 27.320 388 252 14 5 386 66 429 2.35e-23 101
MS.gene034756.t1 MTR_3g095730 24.878 410 268 12 4 390 11 403 4.02e-23 100
MS.gene034756.t1 MTR_3g096370 28.726 369 229 14 3 352 7 360 1.41e-21 96.3
MS.gene034756.t1 MTR_4g091880 27.826 345 189 11 6 343 5 296 2.42e-20 91.7
MS.gene034756.t1 MTR_5g083030 25.824 364 209 13 1 328 288 626 2.47e-19 90.5
MS.gene034756.t1 MTR_4g485520 26.203 374 218 14 2 371 101 420 4.41e-19 89.4
MS.gene034756.t1 MTR_4g485520 26.203 374 218 14 2 371 269 588 7.15e-19 89.4
MS.gene034756.t1 MTR_1g017770 27.273 429 232 16 1 395 39 421 1.07e-18 87.8
MS.gene034756.t1 MTR_4g063800 38.194 144 73 5 6 137 255 394 7.22e-18 86.3
MS.gene034756.t1 MTR_7g078330 36.496 137 78 5 6 136 274 407 1.16e-17 85.5
MS.gene034756.t1 MTR_4g091880 26.648 349 216 10 6 343 5 324 2.04e-17 83.6
MS.gene034756.t1 MTR_3g085610 48.837 86 36 3 7 92 281 358 3.48e-17 84.3
MS.gene034756.t1 MTR_4g107010 26.625 323 195 13 7 307 281 583 7.00e-17 83.2
MS.gene034756.t1 MTR_2g011140 29.670 273 168 11 8 274 17 271 2.96e-16 80.1
MS.gene034756.t1 MTR_7g059405 27.035 344 222 12 6 340 264 587 6.42e-16 80.1
MS.gene034756.t1 MTR_2g018010 34.211 152 78 6 4 137 290 437 1.01e-15 79.7
MS.gene034756.t1 MTR_8g080280 25.060 415 228 16 7 355 283 680 2.54e-15 78.6
MS.gene034756.t1 MTR_1g090320 50.000 76 37 1 7 82 514 588 4.27e-15 78.2
MS.gene034756.t1 MTR_1g090320 50.000 76 37 1 7 82 516 590 4.46e-15 77.8
MS.gene034756.t1 MTR_4g028960 48.000 75 37 2 3 77 277 349 9.33e-15 76.6
MS.gene034756.t1 MTR_5g034440 54.286 70 30 2 10 79 284 351 1.05e-14 76.3
MS.gene034756.t1 MTR_3g078160 29.183 257 122 11 7 211 276 524 3.87e-14 74.7
MS.gene034756.t1 MTR_3g078160 29.183 257 122 11 7 211 276 524 4.85e-14 74.3
MS.gene034756.t1 MTR_1g037070 45.122 82 44 1 269 350 1 81 5.06e-14 67.8
MS.gene034756.t1 MTR_7g116600 36.054 147 73 6 2 136 74 211 8.30e-14 73.2
MS.gene034756.t1 MTR_3g078160 29.070 258 123 11 6 211 275 524 9.26e-14 73.2
MS.gene034756.t1 MTR_8g103227 45.946 74 39 1 7 80 396 468 4.40e-13 71.6
MS.gene034756.t1 MTR_1g069845 44.444 72 38 2 4 75 122 191 4.49e-13 71.2
MS.gene034756.t1 MTR_7g097020 44.000 75 40 2 4 78 239 311 5.51e-13 71.2
MS.gene034756.t1 MTR_1g069845 44.444 72 38 2 4 75 243 312 6.95e-13 70.9
MS.gene034756.t1 MTR_1g069845 44.444 72 38 2 4 75 239 308 6.99e-13 70.9
MS.gene034756.t1 MTR_6g462610 32.298 161 95 4 121 277 7 157 1.20e-12 66.2
MS.gene034756.t1 MTR_7g053260 45.070 71 37 2 4 74 76 144 2.38e-12 68.6
MS.gene034756.t1 MTR_5g020570 40.909 88 46 4 2 89 284 365 9.65e-12 67.4
MS.gene034756.t1 MTR_5g020570 40.909 88 46 4 2 89 269 350 9.65e-12 67.4
MS.gene034756.t1 MTR_3g466220 42.667 75 41 2 4 78 231 303 9.83e-12 67.4
MS.gene034756.t1 MTR_3g466220 42.667 75 41 2 4 78 210 282 1.06e-11 67.0
MS.gene034756.t1 MTR_3g115670 27.222 180 109 5 10 185 34 195 2.06e-11 66.2
MS.gene034756.t1 MTR_8g077205 39.560 91 49 3 7 97 164 248 3.41e-11 65.5
MS.gene034756.t1 MTR_8g077205 42.169 83 42 3 7 89 276 352 3.99e-11 65.5
MS.gene034756.t1 MTR_7g117890 33.577 137 74 6 4 138 253 374 8.53e-11 64.3
MS.gene034756.t1 MTR_2g096850 45.205 73 38 2 2 74 736 806 9.98e-11 64.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene034756.t1 AT3G11840 41.667 444 211 6 2 403 6 443 2.28e-114 342
MS.gene034756.t1 AT2G35930 42.822 411 218 9 2 405 8 408 1.96e-103 312
MS.gene034756.t1 AT3G52450 38.584 438 227 12 1 404 1 430 1.48e-90 280
MS.gene034756.t1 AT3G19380 29.787 423 255 11 4 405 12 413 4.50e-46 164
MS.gene034756.t1 AT1G49780 30.370 405 256 12 4 394 12 404 3.16e-40 148
MS.gene034756.t1 AT1G66160 27.518 407 252 13 3 393 30 409 5.22e-33 129
MS.gene034756.t1 AT5G37490 26.923 416 238 13 3 386 28 409 6.96e-33 128
MS.gene034756.t1 AT3G18710 29.073 399 252 13 4 386 10 393 3.43e-30 120
MS.gene034756.t1 AT1G66160 25.307 407 245 14 3 393 30 393 8.40e-23 99.8
MS.gene034756.t1 AT5G09800 23.951 405 264 13 6 389 11 392 2.96e-21 95.1
MS.gene034756.t1 AT5G64660 25.118 422 254 15 4 389 8 403 5.10e-21 94.7
MS.gene034756.t1 AT3G49810 26.290 407 240 12 1 386 59 426 4.16e-19 89.4
MS.gene034756.t1 AT5G65920 25.558 403 258 13 5 395 59 431 6.48e-19 88.6
MS.gene034756.t1 AT5G65920 25.558 403 258 13 5 395 59 431 6.48e-19 88.6
MS.gene034756.t1 AT3G54850 51.351 74 34 2 6 79 248 319 5.29e-17 83.6
MS.gene034756.t1 AT1G29340 28.333 300 168 12 4 278 303 580 6.04e-17 83.6
MS.gene034756.t1 AT1G67530 49.412 85 37 3 7 91 273 351 1.12e-16 82.4
MS.gene034756.t1 AT3G46510 34.459 148 73 4 6 137 256 395 1.19e-16 82.4
MS.gene034756.t1 AT1G67530 49.412 85 37 3 7 91 273 351 1.50e-16 82.4
MS.gene034756.t1 AT1G67530 49.412 85 37 3 7 91 273 351 1.50e-16 82.4
MS.gene034756.t1 AT1G67530 49.412 85 37 3 7 91 273 351 1.50e-16 82.4
MS.gene034756.t1 AT1G71020 48.684 76 37 2 2 77 91 164 2.00e-16 81.3
MS.gene034756.t1 AT4G21350 23.632 402 240 11 5 382 4 362 2.66e-16 80.5
MS.gene034756.t1 AT1G71020 48.684 76 37 2 2 77 239 312 3.11e-16 81.3
MS.gene034756.t1 AT1G24330 27.361 413 224 19 7 355 276 676 3.12e-16 81.3
MS.gene034756.t1 AT1G24330 27.361 413 224 19 7 355 276 676 3.12e-16 81.3
MS.gene034756.t1 AT1G23030 48.684 76 37 2 2 77 237 310 3.89e-16 80.9
MS.gene034756.t1 AT5G42340 26.740 273 182 8 6 275 290 547 2.09e-15 78.6
MS.gene034756.t1 AT2G28830 45.349 86 39 3 7 92 185 262 1.79e-14 75.5
MS.gene034756.t1 AT3G07360 43.038 79 43 2 1 79 69 145 1.83e-14 75.1
MS.gene034756.t1 AT5G01830 32.051 156 96 5 1 148 269 422 6.82e-14 73.9
MS.gene034756.t1 AT1G01660 43.836 73 39 2 7 79 499 569 1.08e-13 73.2
MS.gene034756.t1 AT1G01660 43.836 73 39 2 7 79 498 568 1.11e-13 73.2
MS.gene034756.t1 AT1G27910 49.315 73 35 2 7 79 280 350 1.22e-13 73.2
MS.gene034756.t1 AT2G45920 45.455 77 40 2 5 81 324 398 2.33e-13 71.6
MS.gene034756.t1 AT3G54790 44.000 75 40 2 4 78 200 272 3.40e-12 68.6
MS.gene034756.t1 AT3G54790 44.000 75 40 2 4 78 236 308 3.97e-12 68.6
MS.gene034756.t1 AT3G54790 44.000 75 40 2 4 78 236 308 3.97e-12 68.6
MS.gene034756.t1 AT3G61390 47.143 70 35 2 5 74 277 344 5.13e-12 67.4
MS.gene034756.t1 AT5G65500 42.500 80 42 3 2 80 711 787 5.42e-12 68.2
MS.gene034756.t1 AT5G65500 42.500 80 42 3 2 80 719 795 5.54e-12 68.2
MS.gene034756.t1 AT3G61390 47.143 70 35 2 5 74 352 419 6.97e-12 67.4
MS.gene034756.t1 AT5G57035 42.466 73 40 2 6 78 708 778 7.92e-12 67.8
MS.gene034756.t1 AT1G60190 32.867 143 80 6 12 142 284 422 1.69e-11 66.6
MS.gene034756.t1 AT1G01680 43.478 69 37 2 10 78 237 303 3.01e-11 64.3
MS.gene034756.t1 AT5G51270 43.056 72 38 2 7 78 736 804 4.80e-11 65.1
MS.gene034756.t1 AT5G51270 43.056 72 38 2 7 78 736 804 4.80e-11 65.1
MS.gene034756.t1 AT1G20780 27.869 183 108 7 8 185 25 188 5.37e-11 65.1
MS.gene034756.t1 AT1G20780 27.869 183 108 7 8 185 25 188 5.37e-11 65.1
MS.gene034756.t1 AT1G20780 27.869 183 108 7 8 185 25 188 5.37e-11 65.1

Find 48 sgRNAs with CRISPR-Local

Find 62 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TAACAGGATCTTTCATTATT+TGG 0.118442 1.1:+44241305 None:intergenic
TTCATTATTTGGAGTGATAT+TGG 0.189499 1.1:+44241316 None:intergenic
CACAATTCTTTCGAAGAATT+CGG 0.199521 1.1:+44240670 None:intergenic
ACTAATAGAGATTGAATTAA+TGG 0.226085 1.1:-44240525 MS.gene034756:CDS
TGATTCCTTTGAGAAGCTTT+TGG 0.238517 1.1:+44241059 None:intergenic
TAAAGTGATGGAAATATTTA+AGG 0.243590 1.1:-44240216 MS.gene034756:CDS
TTTACTATGTTGTTGTCCTT+TGG 0.288354 1.1:-44240591 MS.gene034756:CDS
TTACTATGTTGTTGTCCTTT+GGG 0.311153 1.1:-44240590 MS.gene034756:CDS
TTCTGCTACAAAGATGGTTT+TGG 0.311443 1.1:-44240315 MS.gene034756:CDS
ATTTGAAAATAATCAAATAC+TGG 0.314035 1.1:-44240816 MS.gene034756:CDS
TCATTATTTGGAGTGATATT+GGG 0.316730 1.1:+44241317 None:intergenic
ATTCCTGTTATAGCAGTAAC+AGG 0.346346 1.1:+44241289 None:intergenic
GTTGTCCTTTGGGAAGAAAT+AGG 0.365624 1.1:-44240580 MS.gene034756:CDS
TTAAGGCTCATTCTGAGGTT+TGG 0.366681 1.1:-44240199 MS.gene034756:CDS
GATCCTGTTACTGCTATAAC+AGG 0.386049 1.1:-44241292 MS.gene034756:CDS
GTTGACTGAGAGATTCTTCA+AGG 0.402733 1.1:-44240393 MS.gene034756:CDS
CATTTATGTTCTTGTGCAAA+TGG 0.411329 1.1:-44240455 MS.gene034756:CDS
TTGGATGAGATGTTAAAAGT+TGG 0.415505 1.1:-44240296 MS.gene034756:CDS
GGTGTTAAATCAGAATCTAA+TGG 0.418840 1.1:+44241187 None:intergenic
TCTCAAGAGTTTAATGCAGT+TGG 0.418910 1.1:-44241020 MS.gene034756:CDS
ATTGTGAAAGTTCTAAGAAA+TGG 0.433892 1.1:-44240653 MS.gene034756:CDS
ACAATTCTTTCGAAGAATTC+GGG 0.437523 1.1:+44240671 None:intergenic
GGGAAGAAATAGGTTAATGA+TGG 0.446476 1.1:-44240570 MS.gene034756:CDS
ATGAACATAATCATCTCTTT+CGG 0.450958 1.1:+44240941 None:intergenic
TTCGTCGTTTGATTCAATCT+TGG 0.454949 1.1:-44241153 MS.gene034756:CDS
AGAATCACAGAACTCACATT+TGG 0.479777 1.1:-44240488 MS.gene034756:CDS
GAAGGTATTGAAGAAGCTCT+TGG 0.482882 1.1:-44240887 MS.gene034756:CDS
AAACTCTTGAGATGAACCTT+AGG 0.486218 1.1:+44241031 None:intergenic
CAAAGGAATCAAAGATCCTA+AGG 0.507179 1.1:-44241047 MS.gene034756:CDS
AGAGATGTTTGAGGAAAACA+AGG 0.510086 1.1:+44240167 None:intergenic
AGATTCTTCACTTCTTCTGT+AGG 0.513088 1.1:+44240842 None:intergenic
AAACGACGAAGTGTGTGATT+TGG 0.523610 1.1:+44241166 None:intergenic
GGAAGAGGTTGTTGTGTGAC+AGG 0.532069 1.1:+44241208 None:intergenic
TGCACACAAAATGCTTCACT+TGG 0.539364 1.1:-44241130 MS.gene034756:CDS
AATATTTAAGGCTCATTCTG+AGG 0.547702 1.1:-44240204 MS.gene034756:CDS
AAATCAGAATCTAATGGAAG+AGG 0.553606 1.1:+44241193 None:intergenic
CTTCAAGGTTTCAATGACAG+TGG 0.556204 1.1:-44240378 MS.gene034756:CDS
AAATACTGGATTCTTTAACA+TGG 0.565062 1.1:-44240802 MS.gene034756:CDS
CTAGCATAGAGAGATGTTTG+AGG 0.570126 1.1:+44240158 None:intergenic
CTCAAACATCTCTCTATGCT+AGG 0.570560 1.1:-44240157 MS.gene034756:CDS
ATTAACCTATTTCTTCCCAA+AGG 0.586930 1.1:+44240575 None:intergenic
ATCGAGACAGCATTGAACAT+TGG 0.589905 1.1:-44241258 MS.gene034756:CDS
CAAGTCCAAAAGCTTCTCAA+AGG 0.606638 1.1:-44241064 MS.gene034756:CDS
ATTGGGCAAATGAAGTATTG+TGG 0.626661 1.1:+44241334 None:intergenic
AGGTTAATGATGGTTGAAGC+TGG 0.636668 1.1:-44240560 MS.gene034756:CDS
GTATTTGAAAGATAAAGTGA+TGG 0.642403 1.1:-44240228 MS.gene034756:CDS
AATGGTGTAATAACGCAACA+AGG 0.660881 1.1:-44240635 MS.gene034756:CDS
GGTTACTGTGAAATCGCATG+CGG 0.706124 1.1:-44240753 MS.gene034756:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATTTGAAAATAATCAAATAC+TGG - chr1.1:44240690-44240709 MS.gene034756:CDS 15.0%
!! ACTAATAGAGATTGAATTAA+TGG - chr1.1:44240981-44241000 MS.gene034756:CDS 20.0%
!! ATAGTTGATTGTTACAAAAA+AGG - chr1.1:44240586-44240605 MS.gene034756:CDS 20.0%
!!! TAAAGTGATGGAAATATTTA+AGG - chr1.1:44241290-44241309 MS.gene034756:CDS 20.0%
! AAAAAAGGCGAAATTTATGA+AGG - chr1.1:44240601-44240620 MS.gene034756:CDS 25.0%
! AAATACTGGATTCTTTAACA+TGG - chr1.1:44240704-44240723 MS.gene034756:CDS 25.0%
! ATGAACATAATCATCTCTTT+CGG + chr1.1:44240568-44240587 None:intergenic 25.0%
! GTATTTGAAAGATAAAGTGA+TGG - chr1.1:44241278-44241297 MS.gene034756:CDS 25.0%
! TAACAGGATCTTTCATTATT+TGG + chr1.1:44240204-44240223 None:intergenic 25.0%
!! AGAAAGATTTTGTTGGAAAA+TGG - chr1.1:44240538-44240557 MS.gene034756:CDS 25.0%
!! TAAATTTTCTGCTACAAAGA+TGG - chr1.1:44241185-44241204 MS.gene034756:CDS 25.0%
!! TCATTATTTGGAGTGATATT+GGG + chr1.1:44240192-44240211 None:intergenic 25.0%
!! TTCATTATTTGGAGTGATAT+TGG + chr1.1:44240193-44240212 None:intergenic 25.0%
!!! ATTGTGAAAGTTCTAAGAAA+TGG - chr1.1:44240853-44240872 MS.gene034756:CDS 25.0%
AAATCAGAATCTAATGGAAG+AGG + chr1.1:44240316-44240335 None:intergenic 30.0%
ACAATTCTTTCGAAGAATTC+GGG + chr1.1:44240838-44240857 None:intergenic 30.0%
CACAATTCTTTCGAAGAATT+CGG + chr1.1:44240839-44240858 None:intergenic 30.0%
CATTTATGTTCTTGTGCAAA+TGG - chr1.1:44241051-44241070 MS.gene034756:CDS 30.0%
GGTGTTAAATCAGAATCTAA+TGG + chr1.1:44240322-44240341 None:intergenic 30.0%
TTACTATGTTGTTGTCCTTT+GGG - chr1.1:44240916-44240935 MS.gene034756:CDS 30.0%
TTGGATGAGATGTTAAAAGT+TGG - chr1.1:44241210-44241229 MS.gene034756:CDS 30.0%
TTTACTATGTTGTTGTCCTT+TGG - chr1.1:44240915-44240934 MS.gene034756:CDS 30.0%
! AATATTTAAGGCTCATTCTG+AGG - chr1.1:44241302-44241321 MS.gene034756:CDS 30.0%
! ATTAACCTATTTCTTCCCAA+AGG + chr1.1:44240934-44240953 None:intergenic 30.0%
! GAGCAATAGAAAGATTTTGT+TGG - chr1.1:44240531-44240550 MS.gene034756:CDS 30.0%
!!! TTTCAGTTTTTGAGTCATCA+AGG - chr1.1:44241078-44241097 MS.gene034756:CDS 30.0%
AAACTCTTGAGATGAACCTT+AGG + chr1.1:44240478-44240497 None:intergenic 35.0%
AATGGTGTAATAACGCAACA+AGG - chr1.1:44240871-44240890 MS.gene034756:CDS 35.0%
AGAATCACAGAACTCACATT+TGG - chr1.1:44241018-44241037 MS.gene034756:CDS 35.0%
AGAGATGTTTGAGGAAAACA+AGG + chr1.1:44241342-44241361 None:intergenic 35.0%
AGATTCTTCACTTCTTCTGT+AGG + chr1.1:44240667-44240686 None:intergenic 35.0%
AGTTTCCGAGATGAAAAACT+CGG - chr1.1:44240732-44240751 MS.gene034756:CDS 35.0%
ATTCCTGTTATAGCAGTAAC+AGG + chr1.1:44240220-44240239 None:intergenic 35.0%
CAAAGGAATCAAAGATCCTA+AGG - chr1.1:44240459-44240478 MS.gene034756:CDS 35.0%
GGGAAGAAATAGGTTAATGA+TGG - chr1.1:44240936-44240955 MS.gene034756:CDS 35.0%
TCTCAAGAGTTTAATGCAGT+TGG - chr1.1:44240486-44240505 MS.gene034756:CDS 35.0%
TTCGTCGTTTGATTCAATCT+TGG - chr1.1:44240353-44240372 MS.gene034756:CDS 35.0%
! ACTTGAATTTTTGTGAGTGG+TGG + chr1.1:44240427-44240446 None:intergenic 35.0%
! AGTAACCGAGTTTTTCATCT+CGG + chr1.1:44240740-44240759 None:intergenic 35.0%
! ATTTTTGTGAGTGGTGGTTT+TGG + chr1.1:44240421-44240440 None:intergenic 35.0%
! TGGACTTGAATTTTTGTGAG+TGG + chr1.1:44240430-44240449 None:intergenic 35.0%
! TTCTGCTACAAAGATGGTTT+TGG - chr1.1:44241191-44241210 MS.gene034756:CDS 35.0%
!! ATTGGGCAAATGAAGTATTG+TGG + chr1.1:44240175-44240194 None:intergenic 35.0%
!! TGATTCCTTTGAGAAGCTTT+TGG + chr1.1:44240450-44240469 None:intergenic 35.0%
AAACGACGAAGTGTGTGATT+TGG + chr1.1:44240343-44240362 None:intergenic 40.0%
AGGTTAATGATGGTTGAAGC+TGG - chr1.1:44240946-44240965 MS.gene034756:CDS 40.0%
CAAGTCCAAAAGCTTCTCAA+AGG - chr1.1:44240442-44240461 MS.gene034756:CDS 40.0%
CTAGCATAGAGAGATGTTTG+AGG + chr1.1:44241351-44241370 None:intergenic 40.0%
CTCAAACATCTCTCTATGCT+AGG - chr1.1:44241349-44241368 MS.gene034756:CDS 40.0%
CTTCAAGGTTTCAATGACAG+TGG - chr1.1:44241128-44241147 MS.gene034756:CDS 40.0%
GATCCTGTTACTGCTATAAC+AGG - chr1.1:44240214-44240233 MS.gene034756:CDS 40.0%
GTTGACTGAGAGATTCTTCA+AGG - chr1.1:44241113-44241132 MS.gene034756:CDS 40.0%
TGCACACAAAATGCTTCACT+TGG - chr1.1:44240376-44240395 MS.gene034756:CDS 40.0%
! ATCGAGACAGCATTGAACAT+TGG - chr1.1:44240248-44240267 MS.gene034756:CDS 40.0%
! GTTGTCCTTTGGGAAGAAAT+AGG - chr1.1:44240926-44240945 MS.gene034756:CDS 40.0%
!! GAAGGTATTGAAGAAGCTCT+TGG - chr1.1:44240619-44240638 MS.gene034756:CDS 40.0%
!! TTAAGGCTCATTCTGAGGTT+TGG - chr1.1:44241307-44241326 MS.gene034756:CDS 40.0%
!!! GCGATTCAATCGTTTTAGAG+AGG - chr1.1:44240806-44240825 MS.gene034756:CDS 40.0%
GGTTACTGTGAAATCGCATG+CGG - chr1.1:44240753-44240772 MS.gene034756:CDS 45.0%
!!! TGAGTGGTGGTTTTGGTGTT+GGG + chr1.1:44240414-44240433 None:intergenic 45.0%
GGAAGAGGTTGTTGTGTGAC+AGG + chr1.1:44240301-44240320 None:intergenic 50.0%
!!! GTGAGTGGTGGTTTTGGTGT+TGG + chr1.1:44240415-44240434 None:intergenic 50.0%


Chromosome Type Strat End Strand Name
chr1.1 gene 44240154 44241374 44240154 ID=MS.gene034756
chr1.1 mRNA 44240154 44241374 44240154 ID=MS.gene034756.t1;Parent=MS.gene034756
chr1.1 exon 44240154 44241374 44240154 ID=MS.gene034756.t1.exon1;Parent=MS.gene034756.t1
chr1.1 CDS 44240154 44241374 44240154 ID=cds.MS.gene034756.t1;Parent=MS.gene034756.t1
Gene Sequence

>MS.gene034756

ATGGATGAAATTGAAGTTCCACAATACTTCATTTGCCCAATATCACTCCAAATAATGAAAGATCCTGTTACTGCTATAACAGGAATAACATATGATCGAGACAGCATTGAACATTGGTTATTCACAAACAAGAACACAACATGTCCTGTCACACAACAACCTCTTCCATTAGATTCTGATTTAACACCAAATCACACACTTCGTCGTTTGATTCAATCTTGGTGCACACAAAATGCTTCACTTGGTATTGATAGAATCCCAACACCAAAACCACCACTCACAAAAATTCAAGTCCAAAAGCTTCTCAAAGGAATCAAAGATCCTAAGGTTCATCTCAAGAGTTTAATGCAGTTGGAATTGCTTGCTGCTGAGAAAGAGAGCAATAGAAAGATTTTGTTGGAAAATGGTGTGCCGAAAGAGATGATTATGTTCATAGTTGATTGTTACAAAAAAGGCGAAATTTATGAAGGTATTGAAGAAGCTCTTGGTTTTTTACAATTTGTTAAAGTTCCTACAGAAGAAGTGAAGAATCTTCTATTTGAAAATAATCAAATACTGGATTCTTTAACATGGATTTTAGTTTCCGAGATGAAAAACTCGGTTACTGTGAAATCGCATGCGGTTTTAGTGCTTAAAAAATTCATAAACAAATGCGATTCAATCGTTTTAGAGAGGCTAAAACCCGAATTCTTCGAAAGAATTGTGAAAGTTCTAAGAAATGGTGTAATAACGCAACAAGGTTTGTCTTCTGCTTTACATATTTTACTATGTTGTTGTCCTTTGGGAAGAAATAGGTTAATGATGGTTGAAGCTGGTGCAATTCATGAACTAATAGAGATTGAATTAATGGCAATACATGAAAAGAGAATCACAGAACTCACATTTGGTATATTGTTTCATTTATGTTCTTGTGCAAATGGAAGATTTCAGTTTTTGAGTCATCAAGGTTCAATTGCAATGTTGACTGAGAGATTCTTCAAGGTTTCAATGACAGTGGATGATAGAGCTGTTTTTATACTCTCATTGATATCTAAATTTTCTGCTACAAAGATGGTTTTGGATGAGATGTTAAAAGTTGGAACTGTTGCAAAGCTTTTTGTTTTGCTTCAAAGTGATCATGCTAAGTATTTGAAAGATAAAGTGATGGAAATATTTAAGGCTCATTCTGAGGTTTGGAAGAATTCTCCTTGTTTTCCTCAAACATCTCTCTATGCTAGGTGA
Protein sequence

>MS.gene034756.t1

MDEIEVPQYFICPISLQIMKDPVTAITGITYDRDSIEHWLFTNKNTTCPVTQQPLPLDSDLTPNHTLRRLIQSWCTQNASLGIDRIPTPKPPLTKIQVQKLLKGIKDPKVHLKSLMQLELLAAEKESNRKILLENGVPKEMIMFIVDCYKKGEIYEGIEEALGFLQFVKVPTEEVKNLLFENNQILDSLTWILVSEMKNSVTVKSHAVLVLKKFINKCDSIVLERLKPEFFERIVKVLRNGVITQQGLSSALHILLCCCPLGRNRLMMVEAGAIHELIEIELMAIHEKRITELTFGILFHLCSCANGRFQFLSHQGSIAMLTERFFKVSMTVDDRAVFILSLISKFSATKMVLDEMLKVGTVAKLFVLLQSDHAKYLKDKVMEIFKAHSEVWKNSPCFPQTSLYAR