Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene066129.t1 | RHN79430.1 | 96.8 | 441 | 10 | 2 | 1 | 441 | 1 | 437 | 2.50E-233 | 817.8 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene066129.t1 | Q9SVC6 | 54.4 | 445 | 185 | 6 | 1 | 438 | 1 | 434 | 1.1e-123 | 444.9 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene066129.t1 | A0A396JMB5 | 96.8 | 441 | 10 | 2 | 1 | 441 | 1 | 437 | 1.8e-233 | 817.8 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049281 | MS.gene066129 | 0.801735 | 7.82E-49 | -1.69E-46 |
| MS.gene050095 | MS.gene066129 | 0.816408 | 5.62E-52 | -1.69E-46 |
| MS.gene050381 | MS.gene066129 | 0.846617 | 1.94E-59 | -1.69E-46 |
| MS.gene050868 | MS.gene066129 | -0.815546 | 8.75E-52 | -1.69E-46 |
| MS.gene050871 | MS.gene066129 | -0.814473 | 1.51E-51 | -1.69E-46 |
| MS.gene050883 | MS.gene066129 | 0.801299 | 9.61E-49 | -1.69E-46 |
| MS.gene051044 | MS.gene066129 | 0.82627 | 2.97E-54 | -1.69E-46 |
| MS.gene051127 | MS.gene066129 | 0.852731 | 3.81E-61 | -1.69E-46 |
| MS.gene051138 | MS.gene066129 | 0.844456 | 7.48E-59 | -1.69E-46 |
| MS.gene051946 | MS.gene066129 | 0.830066 | 3.62E-55 | -1.69E-46 |
| MS.gene052211 | MS.gene066129 | 0.81395 | 1.97E-51 | -1.69E-46 |
| MS.gene053420 | MS.gene066129 | 0.840833 | 6.85E-58 | -1.69E-46 |
| MS.gene053488 | MS.gene066129 | 0.827642 | 1.40E-54 | -1.69E-46 |
| MS.gene053561 | MS.gene066129 | 0.825523 | 4.48E-54 | -1.69E-46 |
| MS.gene053887 | MS.gene066129 | 0.829931 | 3.90E-55 | -1.69E-46 |
| MS.gene054054 | MS.gene066129 | 0.80405 | 2.60E-49 | -1.69E-46 |
| MS.gene054708 | MS.gene066129 | 0.815898 | 7.30E-52 | -1.69E-46 |
| MS.gene055124 | MS.gene066129 | 0.841707 | 4.04E-58 | -1.69E-46 |
| MS.gene055139 | MS.gene066129 | 0.811569 | 6.56E-51 | -1.69E-46 |
| MS.gene055154 | MS.gene066129 | 0.839595 | 1.44E-57 | -1.69E-46 |
| MS.gene055202 | MS.gene066129 | 0.80319 | 3.92E-49 | -1.69E-46 |
| MS.gene05589 | MS.gene066129 | -0.817159 | 3.81E-52 | -1.69E-46 |
| MS.gene056224 | MS.gene066129 | 0.809721 | 1.64E-50 | -1.69E-46 |
| MS.gene056504 | MS.gene066129 | -0.804357 | 2.25E-49 | -1.69E-46 |
| MS.gene056856 | MS.gene066129 | 0.815338 | 9.73E-52 | -1.69E-46 |
| MS.gene057014 | MS.gene066129 | 0.813027 | 3.15E-51 | -1.69E-46 |
| MS.gene057293 | MS.gene066129 | 0.805132 | 1.55E-49 | -1.69E-46 |
| MS.gene058099 | MS.gene066129 | 0.835942 | 1.25E-56 | -1.69E-46 |
| MS.gene058109 | MS.gene066129 | 0.804121 | 2.52E-49 | -1.69E-46 |
| MS.gene058117 | MS.gene066129 | 0.814511 | 1.48E-51 | -1.69E-46 |
| MS.gene058171 | MS.gene066129 | 0.829919 | 3.93E-55 | -1.69E-46 |
| MS.gene058173 | MS.gene066129 | 0.821638 | 3.63E-53 | -1.69E-46 |
| MS.gene058175 | MS.gene066129 | 0.832108 | 1.14E-55 | -1.69E-46 |
| MS.gene058603 | MS.gene066129 | 0.822064 | 2.89E-53 | -1.69E-46 |
| MS.gene059045 | MS.gene066129 | 0.81679 | 4.61E-52 | -1.69E-46 |
| MS.gene059223 | MS.gene066129 | 0.805325 | 1.41E-49 | -1.69E-46 |
| MS.gene059690 | MS.gene066129 | 0.823054 | 1.70E-53 | -1.69E-46 |
| MS.gene059691 | MS.gene066129 | 0.828193 | 1.03E-54 | -1.69E-46 |
| MS.gene059694 | MS.gene066129 | 0.828251 | 9.97E-55 | -1.69E-46 |
| MS.gene059697 | MS.gene066129 | 0.839834 | 1.25E-57 | -1.69E-46 |
| MS.gene059865 | MS.gene066129 | -0.803836 | 2.88E-49 | -1.69E-46 |
| MS.gene059916 | MS.gene066129 | 0.810027 | 1.41E-50 | -1.69E-46 |
| MS.gene06077 | MS.gene066129 | -0.812017 | 5.24E-51 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene04998 | MS.gene066129 | PPI |
| MS.gene26139 | MS.gene066129 | PPI |
| MS.gene066129 | MS.gene72611 | PPI |
| MS.gene034756 | MS.gene066129 | PPI |
| MS.gene41036 | MS.gene066129 | PPI |
| MS.gene064492 | MS.gene066129 | PPI |
| MS.gene066129 | MS.gene071765 | PPI |
| MS.gene066125 | MS.gene066129 | PPI |
| MS.gene93972 | MS.gene066129 | PPI |
| MS.gene022190 | MS.gene066129 | PPI |
| MS.gene061546 | MS.gene066129 | PPI |
| MS.gene017373 | MS.gene066129 | PPI |
| MS.gene042912 | MS.gene066129 | PPI |
| MS.gene048677 | MS.gene066129 | PPI |
| MS.gene41035 | MS.gene066129 | PPI |
| MS.gene008306 | MS.gene066129 | PPI |
| MS.gene061543 | MS.gene066129 | PPI |
| MS.gene066129 | MS.gene41211 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene066129.t1 | MTR_1g056880 | 96.599 | 441 | 11 | 2 | 1 | 441 | 1 | 437 | 0.0 | 863 |
| MS.gene066129.t1 | MTR_1g056870 | 94.558 | 441 | 20 | 2 | 1 | 441 | 1 | 437 | 0.0 | 824 |
| MS.gene066129.t1 | MTR_1g056840 | 90.023 | 441 | 14 | 3 | 1 | 441 | 1 | 411 | 0.0 | 791 |
| MS.gene066129.t1 | MTR_7g106340 | 65.227 | 440 | 129 | 7 | 1 | 438 | 1 | 418 | 0.0 | 548 |
| MS.gene066129.t1 | MTR_2g087350 | 54.023 | 435 | 166 | 4 | 4 | 438 | 3 | 403 | 1.62e-151 | 436 |
| MS.gene066129.t1 | MTR_1g056910 | 40.741 | 432 | 216 | 8 | 4 | 430 | 3 | 399 | 4.69e-103 | 312 |
| MS.gene066129.t1 | MTR_4g051515 | 36.961 | 441 | 239 | 8 | 4 | 437 | 3 | 411 | 6.79e-92 | 284 |
| MS.gene066129.t1 | MTR_3g065080 | 33.333 | 453 | 236 | 12 | 3 | 437 | 32 | 436 | 3.39e-59 | 200 |
| MS.gene066129.t1 | MTR_5g077510 | 32.955 | 440 | 238 | 15 | 4 | 429 | 32 | 428 | 3.05e-53 | 184 |
| MS.gene066129.t1 | MTR_5g048050 | 31.469 | 429 | 249 | 11 | 2 | 418 | 20 | 415 | 2.01e-51 | 179 |
| MS.gene066129.t1 | MTR_6g071340 | 31.190 | 420 | 244 | 11 | 11 | 418 | 9 | 395 | 1.33e-50 | 177 |
| MS.gene066129.t1 | MTR_4g085720 | 30.841 | 428 | 249 | 11 | 1 | 423 | 8 | 393 | 9.06e-45 | 161 |
| MS.gene066129.t1 | MTR_8g092870 | 28.281 | 442 | 271 | 12 | 5 | 431 | 8 | 418 | 8.29e-33 | 129 |
| MS.gene066129.t1 | MTR_3g095730 | 28.217 | 443 | 268 | 12 | 5 | 431 | 11 | 419 | 2.85e-30 | 121 |
| MS.gene066129.t1 | MTR_4g063800 | 25.408 | 429 | 262 | 13 | 11 | 430 | 259 | 638 | 7.91e-27 | 114 |
| MS.gene066129.t1 | MTR_7g059405 | 27.696 | 408 | 251 | 15 | 11 | 418 | 268 | 631 | 8.90e-27 | 113 |
| MS.gene066129.t1 | MTR_4g485520 | 27.900 | 319 | 168 | 9 | 11 | 315 | 109 | 379 | 4.32e-25 | 107 |
| MS.gene066129.t1 | MTR_4g485520 | 27.900 | 319 | 168 | 9 | 11 | 315 | 277 | 547 | 5.72e-25 | 108 |
| MS.gene066129.t1 | MTR_3g096370 | 27.146 | 431 | 263 | 16 | 4 | 423 | 7 | 397 | 1.19e-24 | 105 |
| MS.gene066129.t1 | MTR_5g015210 | 25.891 | 421 | 264 | 9 | 6 | 426 | 66 | 438 | 5.45e-24 | 104 |
| MS.gene066129.t1 | MTR_2g018010 | 28.571 | 322 | 165 | 11 | 11 | 313 | 296 | 571 | 8.28e-24 | 104 |
| MS.gene066129.t1 | MTR_7g078330 | 29.225 | 284 | 162 | 11 | 11 | 274 | 278 | 542 | 6.72e-23 | 102 |
| MS.gene066129.t1 | MTR_4g107010 | 28.266 | 421 | 247 | 18 | 11 | 418 | 284 | 662 | 1.31e-22 | 101 |
| MS.gene066129.t1 | MTR_5g083030 | 26.111 | 360 | 189 | 12 | 11 | 342 | 297 | 607 | 2.93e-21 | 97.1 |
| MS.gene066129.t1 | MTR_1g094215 | 28.446 | 341 | 183 | 13 | 11 | 339 | 68 | 359 | 3.67e-20 | 92.8 |
| MS.gene066129.t1 | MTR_1g094215 | 28.446 | 341 | 183 | 13 | 11 | 339 | 251 | 542 | 9.31e-20 | 92.4 |
| MS.gene066129.t1 | MTR_3g085610 | 25.427 | 468 | 284 | 18 | 13 | 441 | 286 | 727 | 1.19e-19 | 92.0 |
| MS.gene066129.t1 | MTR_3g078160 | 25.240 | 416 | 264 | 13 | 11 | 418 | 279 | 655 | 1.70e-18 | 88.6 |
| MS.gene066129.t1 | MTR_3g078160 | 25.240 | 416 | 264 | 13 | 11 | 418 | 279 | 655 | 1.79e-18 | 88.6 |
| MS.gene066129.t1 | MTR_5g034440 | 27.371 | 369 | 233 | 13 | 11 | 375 | 284 | 621 | 2.57e-18 | 88.2 |
| MS.gene066129.t1 | MTR_4g091880 | 26.585 | 410 | 246 | 13 | 11 | 418 | 9 | 365 | 8.77e-18 | 85.1 |
| MS.gene066129.t1 | MTR_8g080280 | 27.111 | 450 | 254 | 23 | 13 | 418 | 288 | 707 | 2.00e-17 | 85.5 |
| MS.gene066129.t1 | MTR_4g028960 | 35.088 | 171 | 77 | 7 | 2 | 151 | 273 | 430 | 4.87e-17 | 84.0 |
| MS.gene066129.t1 | MTR_7g097020 | 45.679 | 81 | 37 | 2 | 5 | 85 | 239 | 312 | 1.44e-16 | 82.8 |
| MS.gene066129.t1 | MTR_1g069845 | 47.945 | 73 | 31 | 2 | 9 | 81 | 126 | 191 | 5.76e-16 | 80.5 |
| MS.gene066129.t1 | MTR_7g053260 | 42.500 | 80 | 39 | 2 | 1 | 80 | 72 | 144 | 7.76e-16 | 79.7 |
| MS.gene066129.t1 | MTR_7g116600 | 45.745 | 94 | 40 | 4 | 11 | 104 | 82 | 164 | 8.83e-16 | 79.7 |
| MS.gene066129.t1 | MTR_1g069845 | 45.455 | 77 | 35 | 2 | 5 | 81 | 243 | 312 | 9.92e-16 | 80.1 |
| MS.gene066129.t1 | MTR_1g069845 | 45.455 | 77 | 35 | 2 | 5 | 81 | 239 | 308 | 1.06e-15 | 80.1 |
| MS.gene066129.t1 | MTR_4g091880 | 24.634 | 410 | 226 | 13 | 11 | 418 | 9 | 337 | 1.96e-15 | 77.8 |
| MS.gene066129.t1 | MTR_3g115670 | 26.047 | 215 | 117 | 7 | 11 | 207 | 34 | 224 | 4.00e-15 | 78.2 |
| MS.gene066129.t1 | MTR_1g017770 | 50.649 | 77 | 30 | 3 | 5 | 80 | 42 | 111 | 6.14e-15 | 77.0 |
| MS.gene066129.t1 | MTR_2g011140 | 25.466 | 322 | 188 | 10 | 13 | 330 | 21 | 294 | 7.41e-15 | 76.3 |
| MS.gene066129.t1 | MTR_8g077205 | 44.086 | 93 | 39 | 4 | 5 | 95 | 159 | 240 | 1.28e-14 | 76.6 |
| MS.gene066129.t1 | MTR_8g077205 | 44.086 | 93 | 39 | 4 | 5 | 95 | 271 | 352 | 1.79e-14 | 76.3 |
| MS.gene066129.t1 | MTR_3g078160 | 46.154 | 91 | 41 | 3 | 11 | 100 | 279 | 362 | 5.20e-14 | 74.3 |
| MS.gene066129.t1 | MTR_5g020570 | 42.857 | 98 | 41 | 6 | 1 | 95 | 265 | 350 | 1.87e-13 | 72.8 |
| MS.gene066129.t1 | MTR_5g020570 | 42.857 | 98 | 41 | 6 | 1 | 95 | 280 | 365 | 2.47e-13 | 72.8 |
| MS.gene066129.t1 | MTR_8g103227 | 39.326 | 89 | 40 | 3 | 11 | 99 | 399 | 473 | 6.34e-13 | 71.6 |
| MS.gene066129.t1 | MTR_3g466220 | 41.667 | 84 | 42 | 2 | 2 | 85 | 207 | 283 | 8.41e-13 | 70.9 |
| MS.gene066129.t1 | MTR_3g466220 | 41.667 | 84 | 42 | 2 | 2 | 85 | 228 | 304 | 8.43e-13 | 70.9 |
| MS.gene066129.t1 | MTR_1g079450 | 39.560 | 91 | 44 | 4 | 5 | 95 | 61 | 140 | 1.59e-12 | 69.3 |
| MS.gene066129.t1 | MTR_1g090320 | 43.243 | 74 | 36 | 2 | 11 | 84 | 517 | 584 | 1.75e-12 | 70.1 |
| MS.gene066129.t1 | MTR_1g090320 | 43.243 | 74 | 36 | 2 | 11 | 84 | 519 | 586 | 1.76e-12 | 70.1 |
| MS.gene066129.t1 | MTR_7g117890 | 41.667 | 84 | 42 | 2 | 2 | 85 | 250 | 326 | 6.19e-12 | 68.2 |
| MS.gene066129.t1 | MTR_2g096850 | 37.500 | 80 | 43 | 2 | 1 | 80 | 583 | 655 | 6.02e-11 | 65.1 |
| MS.gene066129.t1 | MTR_2g096850 | 37.500 | 80 | 43 | 2 | 1 | 80 | 734 | 806 | 7.79e-11 | 64.7 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene066129.t1 | AT3G52450 | 54.505 | 444 | 186 | 6 | 1 | 438 | 1 | 434 | 1.45e-158 | 455 |
| MS.gene066129.t1 | AT2G35930 | 52.036 | 442 | 171 | 5 | 1 | 438 | 6 | 410 | 3.67e-155 | 446 |
| MS.gene066129.t1 | AT3G11840 | 34.958 | 472 | 235 | 12 | 3 | 435 | 6 | 444 | 1.89e-78 | 251 |
| MS.gene066129.t1 | AT3G19380 | 33.487 | 433 | 238 | 10 | 1 | 423 | 8 | 400 | 3.05e-50 | 176 |
| MS.gene066129.t1 | AT5G37490 | 30.575 | 435 | 253 | 14 | 4 | 429 | 28 | 422 | 3.83e-47 | 168 |
| MS.gene066129.t1 | AT1G49780 | 32.589 | 448 | 245 | 12 | 1 | 432 | 8 | 414 | 6.74e-45 | 162 |
| MS.gene066129.t1 | AT1G66160 | 29.621 | 422 | 248 | 13 | 4 | 421 | 30 | 406 | 3.14e-42 | 155 |
| MS.gene066129.t1 | AT5G09800 | 29.385 | 439 | 250 | 14 | 10 | 431 | 14 | 409 | 8.38e-30 | 120 |
| MS.gene066129.t1 | AT1G66160 | 27.014 | 422 | 243 | 14 | 4 | 421 | 30 | 390 | 9.75e-30 | 120 |
| MS.gene066129.t1 | AT1G23030 | 26.794 | 418 | 248 | 14 | 11 | 422 | 245 | 610 | 1.04e-28 | 119 |
| MS.gene066129.t1 | AT3G18710 | 27.540 | 443 | 268 | 12 | 5 | 431 | 10 | 415 | 8.14e-28 | 114 |
| MS.gene066129.t1 | AT2G28830 | 27.273 | 440 | 245 | 18 | 2 | 421 | 178 | 562 | 8.68e-28 | 116 |
| MS.gene066129.t1 | AT5G64660 | 27.009 | 448 | 271 | 12 | 5 | 431 | 8 | 420 | 1.87e-24 | 105 |
| MS.gene066129.t1 | AT5G42340 | 29.392 | 296 | 166 | 8 | 11 | 306 | 294 | 546 | 2.10e-24 | 106 |
| MS.gene066129.t1 | AT1G71020 | 26.995 | 426 | 246 | 14 | 11 | 422 | 99 | 473 | 3.04e-24 | 105 |
| MS.gene066129.t1 | AT3G46510 | 26.651 | 424 | 263 | 17 | 2 | 421 | 250 | 629 | 3.77e-24 | 105 |
| MS.gene066129.t1 | AT1G71020 | 26.995 | 426 | 246 | 14 | 11 | 422 | 247 | 621 | 6.67e-24 | 105 |
| MS.gene066129.t1 | AT3G54850 | 27.829 | 327 | 167 | 12 | 7 | 316 | 248 | 522 | 1.15e-23 | 104 |
| MS.gene066129.t1 | AT3G49810 | 24.528 | 424 | 272 | 9 | 6 | 429 | 63 | 438 | 3.63e-22 | 99.0 |
| MS.gene066129.t1 | AT5G65920 | 24.883 | 426 | 268 | 10 | 6 | 429 | 59 | 434 | 7.89e-22 | 97.8 |
| MS.gene066129.t1 | AT5G65920 | 24.883 | 426 | 268 | 10 | 6 | 429 | 59 | 434 | 7.89e-22 | 97.8 |
| MS.gene066129.t1 | AT1G67530 | 26.770 | 452 | 260 | 14 | 13 | 418 | 278 | 704 | 7.11e-21 | 95.9 |
| MS.gene066129.t1 | AT1G67530 | 26.770 | 452 | 260 | 14 | 13 | 418 | 278 | 704 | 7.11e-21 | 95.9 |
| MS.gene066129.t1 | AT1G67530 | 26.770 | 452 | 260 | 14 | 13 | 418 | 278 | 704 | 7.11e-21 | 95.9 |
| MS.gene066129.t1 | AT1G29340 | 26.267 | 434 | 254 | 14 | 5 | 421 | 303 | 687 | 6.30e-20 | 93.2 |
| MS.gene066129.t1 | AT5G01830 | 26.752 | 314 | 176 | 11 | 4 | 308 | 271 | 539 | 3.05e-18 | 87.8 |
| MS.gene066129.t1 | AT1G67530 | 48.352 | 91 | 35 | 4 | 13 | 103 | 278 | 356 | 2.05e-17 | 85.1 |
| MS.gene066129.t1 | AT1G10560 | 26.266 | 316 | 178 | 11 | 11 | 313 | 292 | 565 | 3.43e-17 | 84.7 |
| MS.gene066129.t1 | AT1G24330 | 25.778 | 450 | 263 | 19 | 13 | 418 | 281 | 703 | 5.33e-17 | 84.0 |
| MS.gene066129.t1 | AT1G24330 | 25.778 | 450 | 263 | 19 | 13 | 418 | 281 | 703 | 5.33e-17 | 84.0 |
| MS.gene066129.t1 | AT1G27910 | 48.235 | 85 | 33 | 4 | 13 | 97 | 285 | 358 | 3.00e-16 | 81.6 |
| MS.gene066129.t1 | AT4G21350 | 25.000 | 404 | 249 | 12 | 11 | 412 | 9 | 360 | 1.35e-15 | 78.6 |
| MS.gene066129.t1 | AT3G54790 | 43.750 | 80 | 38 | 2 | 5 | 84 | 200 | 272 | 1.49e-14 | 76.3 |
| MS.gene066129.t1 | AT3G54790 | 43.750 | 80 | 38 | 2 | 5 | 84 | 236 | 308 | 1.96e-14 | 76.3 |
| MS.gene066129.t1 | AT3G54790 | 43.750 | 80 | 38 | 2 | 5 | 84 | 236 | 308 | 1.96e-14 | 76.3 |
| MS.gene066129.t1 | AT3G07360 | 48.000 | 75 | 32 | 2 | 11 | 85 | 78 | 145 | 2.21e-14 | 75.5 |
| MS.gene066129.t1 | AT1G60190 | 23.955 | 359 | 210 | 13 | 13 | 354 | 284 | 596 | 1.49e-13 | 73.2 |
| MS.gene066129.t1 | AT2G23140 | 38.776 | 98 | 49 | 3 | 11 | 108 | 234 | 320 | 2.34e-13 | 72.8 |
| MS.gene066129.t1 | AT2G23140 | 38.776 | 98 | 49 | 3 | 11 | 108 | 234 | 320 | 2.34e-13 | 72.8 |
| MS.gene066129.t1 | AT2G23140 | 38.776 | 98 | 49 | 3 | 11 | 108 | 237 | 323 | 2.39e-13 | 72.8 |
| MS.gene066129.t1 | AT2G23140 | 38.776 | 98 | 49 | 3 | 11 | 108 | 45 | 131 | 2.61e-13 | 72.4 |
| MS.gene066129.t1 | AT2G23140 | 38.776 | 98 | 49 | 3 | 11 | 108 | 45 | 131 | 2.61e-13 | 72.4 |
| MS.gene066129.t1 | AT1G01660 | 39.474 | 76 | 39 | 2 | 10 | 85 | 501 | 569 | 1.45e-12 | 70.1 |
| MS.gene066129.t1 | AT1G01660 | 39.474 | 76 | 39 | 2 | 10 | 85 | 500 | 568 | 1.48e-12 | 70.1 |
| MS.gene066129.t1 | AT3G02840 | 24.000 | 350 | 219 | 10 | 83 | 417 | 34 | 351 | 1.66e-12 | 68.9 |
| MS.gene066129.t1 | AT2G45920 | 40.244 | 82 | 42 | 2 | 6 | 87 | 324 | 398 | 7.73e-12 | 67.0 |
| MS.gene066129.t1 | AT5G67340 | 32.283 | 127 | 74 | 4 | 5 | 128 | 238 | 355 | 1.31e-11 | 67.0 |
| MS.gene066129.t1 | AT5G67340 | 32.283 | 127 | 74 | 4 | 5 | 128 | 238 | 355 | 1.31e-11 | 67.0 |
| MS.gene066129.t1 | AT1G01680 | 40.260 | 77 | 39 | 2 | 11 | 87 | 237 | 306 | 1.66e-11 | 65.5 |
| MS.gene066129.t1 | AT5G18340 | 35.833 | 120 | 58 | 5 | 5 | 117 | 72 | 179 | 7.98e-11 | 64.3 |
Find 47 sgRNAs with CRISPR-Local
Find 70 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AAGAATCAGAAGCTTCTTTA+AGG | 0.127606 | 1.4:-47208241 | None:intergenic |
| TTGATGCTTTCTTTGATATC+TGG | 0.244295 | 1.4:-47208739 | None:intergenic |
| TTCATGAGTTGTAGTGAAAT+AGG | 0.280796 | 1.4:-47207960 | None:intergenic |
| TGCACCATGAATTCTTCTTA+TGG | 0.299615 | 1.4:+47208161 | MS.gene066129:CDS |
| TATGAAGCAAGTAAATTAAA+AGG | 0.308972 | 1.4:-47209208 | None:intergenic |
| TTCAATGAAATTATTGCAAA+AGG | 0.321472 | 1.4:+47208592 | MS.gene066129:CDS |
| TTAATTCAACTTGTCGAATT+CGG | 0.334269 | 1.4:+47208779 | MS.gene066129:CDS |
| GAAGCCATGTGAGATGATTT+TGG | 0.361012 | 1.4:+47208877 | MS.gene066129:CDS |
| TTAAATTGCATTCAAAGTCT+TGG | 0.383883 | 1.4:+47209167 | MS.gene066129:CDS |
| ATGCCTGTTGAGACAGTAAC+TGG | 0.387709 | 1.4:-47207987 | None:intergenic |
| GATTCCATAAGAAGAATTCA+TGG | 0.398042 | 1.4:-47208165 | None:intergenic |
| AGAGTAAAAGCAATTGAATC+AGG | 0.420580 | 1.4:+47208809 | MS.gene066129:CDS |
| TCATGAGTTGTAGTGAAATA+GGG | 0.428583 | 1.4:-47207959 | None:intergenic |
| TGTTGTTGCTAAGCTTTGTT+TGG | 0.429305 | 1.4:+47209093 | MS.gene066129:CDS |
| GTTCAGGAAATGTTGAGAAT+TGG | 0.434841 | 1.4:+47209070 | MS.gene066129:CDS |
| TTCTTCTTGATTGCAAAGAA+AGG | 0.442698 | 1.4:+47208855 | MS.gene066129:CDS |
| TTTGATGATGATGATGTTGA+AGG | 0.466030 | 1.4:+47208446 | MS.gene066129:CDS |
| GATCCAGTTACTGTCTCAAC+AGG | 0.466859 | 1.4:+47207984 | MS.gene066129:CDS |
| AATTCATGGTGCACCATGCT+TGG | 0.475436 | 1.4:-47208151 | None:intergenic |
| TCAATGAAATTATTGCAAAA+GGG | 0.499783 | 1.4:+47208593 | MS.gene066129:CDS |
| TTGGTTCTTCAAGTTGATAG+TGG | 0.510674 | 1.4:+47209112 | MS.gene066129:CDS |
| AGTCTACGAAGAGTGTGGTT+TGG | 0.516469 | 1.4:-47208125 | None:intergenic |
| TTTGCTGAAATCTATATCAA+AGG | 0.516943 | 1.4:+47208646 | MS.gene066129:CDS |
| AGATTTGAACTTCTAAGCCA+TGG | 0.528702 | 1.4:+47208935 | MS.gene066129:CDS |
| ATGTTATGTCAATGTGCTGA+TGG | 0.528834 | 1.4:+47208911 | MS.gene066129:CDS |
| ACAAGGCAAAGGAGAAAGCA+AGG | 0.529082 | 1.4:+47209137 | MS.gene066129:CDS |
| CTTGCTTCATACCCAACAAG+TGG | 0.530068 | 1.4:+47209220 | MS.gene066129:CDS |
| AGGGTTTGGATAAGTAAATG+AGG | 0.542957 | 1.4:-47208272 | None:intergenic |
| AAATCGACGGTGTATCGAAT+CGG | 0.545134 | 1.4:+47208331 | MS.gene066129:CDS |
| GAACTTCTAAGCCATGGATG+TGG | 0.556866 | 1.4:+47208941 | MS.gene066129:CDS |
| CTGATAATTGAAGATTGTAA+AGG | 0.558747 | 1.4:-47208517 | None:intergenic |
| ATTCTTCTTATGGAATCGAA+AGG | 0.560631 | 1.4:+47208171 | MS.gene066129:CDS |
| TTCGATGCTTTCTCTGTCGT+AGG | 0.572900 | 1.4:-47208012 | None:intergenic |
| TCAAGTTGATAGTGGAAACA+AGG | 0.581380 | 1.4:+47209120 | MS.gene066129:CDS |
| TATTTCACTACAACTCATGA+AGG | 0.582520 | 1.4:+47207962 | MS.gene066129:CDS |
| CGACGGTGTATCGAATCGGC+CGG | 0.591346 | 1.4:+47208335 | MS.gene066129:CDS |
| TGCTAAGAACTCAACAGCGC+CGG | 0.596748 | 1.4:-47208354 | None:intergenic |
| CAAGGCAAAGGAGAAAGCAA+GGG | 0.602241 | 1.4:+47209138 | MS.gene066129:CDS |
| AATCTTCAATTATCAGAACA+AGG | 0.603602 | 1.4:+47208524 | MS.gene066129:CDS |
| CAATAGCTAAACCACATCCA+TGG | 0.618916 | 1.4:-47208952 | None:intergenic |
| TTCGTAGACTCATCCAAGCA+TGG | 0.622209 | 1.4:+47208138 | MS.gene066129:CDS |
| CCGTCGATTTGACTCACTCT+CGG | 0.622821 | 1.4:-47208318 | None:intergenic |
| TGATAGTGGAAACAAGGCAA+AGG | 0.625172 | 1.4:+47209126 | MS.gene066129:CDS |
| GGATGAGTCTACGAAGAGTG+TGG | 0.646535 | 1.4:-47208130 | None:intergenic |
| AGCACCAAAATCATCTCACA+TGG | 0.654659 | 1.4:-47208881 | None:intergenic |
| CCGAGAGTGAGTCAAATCGA+CGG | 0.693824 | 1.4:+47208318 | MS.gene066129:CDS |
| TGGCAAATGATAGAGCTGTG+AGG | 0.778119 | 1.4:+47209005 | MS.gene066129:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TATGAAGCAAGTAAATTAAA+AGG | - | chr1.4:47209211-47209230 | None:intergenic | 20.0% |
| !! | TCAATGAAATTATTGCAAAA+GGG | + | chr1.4:47208593-47208612 | MS.gene066129:CDS | 20.0% |
| !! | TTCAATGAAATTATTGCAAA+AGG | + | chr1.4:47208592-47208611 | MS.gene066129:CDS | 20.0% |
| !!! | AATTGTTTTGAGCTTTTTTA+GGG | - | chr1.4:47208294-47208313 | None:intergenic | 20.0% |
| ! | AATCTTCAATTATCAGAACA+AGG | + | chr1.4:47208524-47208543 | MS.gene066129:CDS | 25.0% |
| ! | ACTCTCTTAAACTTCAAAAA+TGG | + | chr1.4:47208554-47208573 | MS.gene066129:CDS | 25.0% |
| ! | CTGATAATTGAAGATTGTAA+AGG | - | chr1.4:47208520-47208539 | None:intergenic | 25.0% |
| ! | TTAAATTGCATTCAAAGTCT+TGG | + | chr1.4:47209167-47209186 | MS.gene066129:CDS | 25.0% |
| ! | TTAATTCAACTTGTCGAATT+CGG | + | chr1.4:47208779-47208798 | MS.gene066129:CDS | 25.0% |
| ! | TTTGCTGAAATCTATATCAA+AGG | + | chr1.4:47208646-47208665 | MS.gene066129:CDS | 25.0% |
| !! | TGTTTCAAAGAAGATTTTGA+GGG | + | chr1.4:47208973-47208992 | MS.gene066129:CDS | 25.0% |
| !! | TTGTTTCAAAGAAGATTTTG+AGG | + | chr1.4:47208972-47208991 | MS.gene066129:CDS | 25.0% |
| !!! | CAATTGTTTTGAGCTTTTTT+AGG | - | chr1.4:47208295-47208314 | None:intergenic | 25.0% |
| !!! | TTTGCTTTTGACTTCAAAAT+AGG | + | chr1.4:47208470-47208489 | MS.gene066129:CDS | 25.0% |
| AAGAATCAGAAGCTTCTTTA+AGG | - | chr1.4:47208244-47208263 | None:intergenic | 30.0% | |
| AGAGTAAAAGCAATTGAATC+AGG | + | chr1.4:47208809-47208828 | MS.gene066129:CDS | 30.0% | |
| ATTCTTCTTATGGAATCGAA+AGG | + | chr1.4:47208171-47208190 | MS.gene066129:CDS | 30.0% | |
| GAAATAGGGCAAAGAAAAAA+TGG | - | chr1.4:47207948-47207967 | None:intergenic | 30.0% | |
| GATTCCATAAGAAGAATTCA+TGG | - | chr1.4:47208168-47208187 | None:intergenic | 30.0% | |
| TATTTCACTACAACTCATGA+AGG | + | chr1.4:47207962-47207981 | MS.gene066129:CDS | 30.0% | |
| TCATGAGTTGTAGTGAAATA+GGG | - | chr1.4:47207962-47207981 | None:intergenic | 30.0% | |
| TTCATGAGTTGTAGTGAAAT+AGG | - | chr1.4:47207963-47207982 | None:intergenic | 30.0% | |
| TTCTTCTTGATTGCAAAGAA+AGG | + | chr1.4:47208855-47208874 | MS.gene066129:CDS | 30.0% | |
| TTGATGCTTTCTTTGATATC+TGG | - | chr1.4:47208742-47208761 | None:intergenic | 30.0% | |
| !! | TTTAAGGAGTTTTTCGATGA+GGG | - | chr1.4:47208228-47208247 | None:intergenic | 30.0% |
| !! | TTTGATGATGATGATGTTGA+AGG | + | chr1.4:47208446-47208465 | MS.gene066129:CDS | 30.0% |
| !!! | TTTAGATTCGCTAGTTTTGA+TGG | - | chr1.4:47208680-47208699 | None:intergenic | 30.0% |
| !!! | TTTTGAGCTTTTTTAGGGTT+TGG | - | chr1.4:47208289-47208308 | None:intergenic | 30.0% |
| AACTAACTCGACGAAAAACT+CGG | - | chr1.4:47208705-47208724 | None:intergenic | 35.0% | |
| AGATTTGAACTTCTAAGCCA+TGG | + | chr1.4:47208935-47208954 | MS.gene066129:CDS | 35.0% | |
| AGGGTTTGGATAAGTAAATG+AGG | - | chr1.4:47208275-47208294 | None:intergenic | 35.0% | |
| ATGTTATGTCAATGTGCTGA+TGG | + | chr1.4:47208911-47208930 | MS.gene066129:CDS | 35.0% | |
| GTTCAGGAAATGTTGAGAAT+TGG | + | chr1.4:47209070-47209089 | MS.gene066129:CDS | 35.0% | |
| TGCACCATGAATTCTTCTTA+TGG | + | chr1.4:47208161-47208180 | MS.gene066129:CDS | 35.0% | |
| ! | CGAAAAATGGCTCTTTTCAT+CGG | + | chr1.4:47208031-47208050 | MS.gene066129:CDS | 35.0% |
| !! | ACAGAGAAAGCATCGAAAAA+TGG | + | chr1.4:47208018-47208037 | MS.gene066129:CDS | 35.0% |
| !! | CTTTAAGGAGTTTTTCGATG+AGG | - | chr1.4:47208229-47208248 | None:intergenic | 35.0% |
| !! | GATTTTGAGGGTTTCAACAA+TGG | + | chr1.4:47208985-47209004 | MS.gene066129:CDS | 35.0% |
| !! | TCAAGTTGATAGTGGAAACA+AGG | + | chr1.4:47209120-47209139 | MS.gene066129:CDS | 35.0% |
| !! | TGTTGTTGCTAAGCTTTGTT+TGG | + | chr1.4:47209093-47209112 | MS.gene066129:CDS | 35.0% |
| !! | TTGGTTCTTCAAGTTGATAG+TGG | + | chr1.4:47209112-47209131 | MS.gene066129:CDS | 35.0% |
| !! | TTTTTCGATGAGGGTTTTTG+TGG | - | chr1.4:47208219-47208238 | None:intergenic | 35.0% |
| !!! | TGAGATGATTTTGGTGCTTT+TGG | + | chr1.4:47208886-47208905 | MS.gene066129:CDS | 35.0% |
| !!! | TGCAACACATTTTGTTGTTC+AGG | + | chr1.4:47209054-47209073 | MS.gene066129:CDS | 35.0% |
| AAATCGACGGTGTATCGAAT+CGG | + | chr1.4:47208331-47208350 | MS.gene066129:CDS | 40.0% | |
| AGCACCAAAATCATCTCACA+TGG | - | chr1.4:47208884-47208903 | None:intergenic | 40.0% | |
| CAATAGCTAAACCACATCCA+TGG | - | chr1.4:47208955-47208974 | None:intergenic | 40.0% | |
| ! | GAAGCCATGTGAGATGATTT+TGG | + | chr1.4:47208877-47208896 | MS.gene066129:CDS | 40.0% |
| ! | GTTTTTGTGGTTGGAGGTTT+TGG | - | chr1.4:47208206-47208225 | None:intergenic | 40.0% |
| !! | TGATAGTGGAAACAAGGCAA+AGG | + | chr1.4:47209126-47209145 | MS.gene066129:CDS | 40.0% |
| !!! | GTGAGTTGTTGTTTTGTGAC+AGG | - | chr1.4:47208071-47208090 | None:intergenic | 40.0% |
| AATTCATGGTGCACCATGCT+TGG | - | chr1.4:47208154-47208173 | None:intergenic | 45.0% | |
| ACAAGGCAAAGGAGAAAGCA+AGG | + | chr1.4:47209137-47209156 | MS.gene066129:CDS | 45.0% | |
| ATGCCTGTTGAGACAGTAAC+TGG | - | chr1.4:47207990-47208009 | None:intergenic | 45.0% | |
| CAAGGCAAAGGAGAAAGCAA+GGG | + | chr1.4:47209138-47209157 | MS.gene066129:CDS | 45.0% | |
| CTTGCTTCATACCCAACAAG+TGG | + | chr1.4:47209220-47209239 | MS.gene066129:CDS | 45.0% | |
| GAACTTCTAAGCCATGGATG+TGG | + | chr1.4:47208941-47208960 | MS.gene066129:CDS | 45.0% | |
| GATCCAGTTACTGTCTCAAC+AGG | + | chr1.4:47207984-47208003 | MS.gene066129:CDS | 45.0% | |
| TGGCAAATGATAGAGCTGTG+AGG | + | chr1.4:47209005-47209024 | MS.gene066129:CDS | 45.0% | |
| TTCGATGCTTTCTCTGTCGT+AGG | - | chr1.4:47208015-47208034 | None:intergenic | 45.0% | |
| TTCGTAGACTCATCCAAGCA+TGG | + | chr1.4:47208138-47208157 | MS.gene066129:CDS | 45.0% | |
| ! | AGTCTACGAAGAGTGTGGTT+TGG | - | chr1.4:47208128-47208147 | None:intergenic | 45.0% |
| ! | ATGAGGGTTTTTGTGGTTGG+AGG | - | chr1.4:47208212-47208231 | None:intergenic | 45.0% |
| ! | TCGATGAGGGTTTTTGTGGT+TGG | - | chr1.4:47208215-47208234 | None:intergenic | 45.0% |
| CCGAGAGTGAGTCAAATCGA+CGG | + | chr1.4:47208318-47208337 | MS.gene066129:CDS | 50.0% | |
| GGATGAGTCTACGAAGAGTG+TGG | - | chr1.4:47208133-47208152 | None:intergenic | 50.0% | |
| TGCTAAGAACTCAACAGCGC+CGG | - | chr1.4:47208357-47208376 | None:intergenic | 50.0% | |
| !! | CCGTCGATTTGACTCACTCT+CGG | - | chr1.4:47208321-47208340 | None:intergenic | 50.0% |
| !!! | GTGGTTGGAGGTTTTGGAGT+TGG | - | chr1.4:47208200-47208219 | None:intergenic | 50.0% |
| CGACGGTGTATCGAATCGGC+CGG | + | chr1.4:47208335-47208354 | MS.gene066129:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.4 | gene | 47207921 | 47209246 | 47207921 | ID=MS.gene066129 |
| chr1.4 | mRNA | 47207921 | 47209246 | 47207921 | ID=MS.gene066129.t1;Parent=MS.gene066129 |
| chr1.4 | exon | 47207921 | 47209246 | 47207921 | ID=MS.gene066129.t1.exon1;Parent=MS.gene066129.t1 |
| chr1.4 | CDS | 47207921 | 47209246 | 47207921 | ID=cds.MS.gene066129.t1;Parent=MS.gene066129.t1 |
| Gene Sequence |
| Protein sequence |
