AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene034753

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene034753.t1 MTR_1g056880 95.909 440 15 1 1 440 1 437 0.0 863
MS.gene034753.t1 MTR_1g056870 93.636 440 25 1 1 440 1 437 0.0 823
MS.gene034753.t1 MTR_1g056840 88.864 440 20 2 1 440 1 411 0.0 773
MS.gene034753.t1 MTR_7g106340 64.465 439 133 7 1 437 1 418 0.0 542
MS.gene034753.t1 MTR_2g087350 54.253 435 164 6 4 437 3 403 7.82e-149 429
MS.gene034753.t1 MTR_1g056910 40.603 431 217 8 4 429 3 399 2.17e-104 316
MS.gene034753.t1 MTR_4g051515 36.364 440 242 8 4 436 3 411 5.61e-91 282
MS.gene034753.t1 MTR_3g065080 33.554 453 234 13 3 436 32 436 1.31e-58 198
MS.gene034753.t1 MTR_5g077510 33.790 438 236 17 4 428 32 428 1.51e-52 182
MS.gene034753.t1 MTR_5g048050 32.168 429 245 13 2 417 20 415 6.33e-52 181
MS.gene034753.t1 MTR_6g071340 31.504 419 243 12 11 417 9 395 5.19e-51 178
MS.gene034753.t1 MTR_4g085720 31.148 427 248 11 1 422 8 393 1.81e-45 163
MS.gene034753.t1 MTR_8g092870 28.733 442 268 13 5 430 8 418 1.02e-33 131
MS.gene034753.t1 MTR_3g095730 28.442 443 266 13 5 430 11 419 1.96e-30 122
MS.gene034753.t1 MTR_4g063800 25.701 428 261 14 11 429 259 638 2.13e-27 115
MS.gene034753.t1 MTR_7g059405 27.273 407 253 13 11 417 268 631 8.34e-27 113
MS.gene034753.t1 MTR_4g485520 28.302 318 167 9 11 314 109 379 5.76e-26 110
MS.gene034753.t1 MTR_4g485520 28.438 320 164 9 11 314 277 547 8.37e-26 110
MS.gene034753.t1 MTR_3g096370 27.252 444 245 17 4 422 7 397 2.24e-25 107
MS.gene034753.t1 MTR_2g018010 28.349 321 166 11 11 312 296 571 5.64e-24 105
MS.gene034753.t1 MTR_7g078330 30.686 277 166 10 11 273 278 542 1.71e-23 103
MS.gene034753.t1 MTR_5g015210 25.476 420 266 9 6 425 66 438 1.72e-23 102
MS.gene034753.t1 MTR_5g083030 27.019 359 186 13 11 341 297 607 1.02e-22 101
MS.gene034753.t1 MTR_4g107010 27.619 420 250 18 11 417 284 662 6.40e-21 96.3
MS.gene034753.t1 MTR_1g094215 28.824 340 182 13 11 338 68 359 9.07e-21 94.7
MS.gene034753.t1 MTR_1g094215 28.824 340 182 13 11 338 251 542 3.26e-20 93.6
MS.gene034753.t1 MTR_5g034440 27.717 368 232 13 11 374 284 621 3.25e-19 90.9
MS.gene034753.t1 MTR_3g085610 25.607 453 274 17 13 426 286 714 3.47e-19 90.9
MS.gene034753.t1 MTR_8g080280 27.679 448 253 22 13 417 288 707 7.22e-18 86.7
MS.gene034753.t1 MTR_4g091880 26.406 409 247 13 11 417 9 365 1.17e-17 84.7
MS.gene034753.t1 MTR_3g078160 24.819 415 266 13 11 417 279 655 2.58e-17 84.7
MS.gene034753.t1 MTR_3g078160 24.819 415 266 13 11 417 279 655 2.72e-17 84.7
MS.gene034753.t1 MTR_1g017770 26.714 423 259 14 8 425 45 421 4.76e-17 83.2
MS.gene034753.t1 MTR_4g028960 23.636 440 256 16 4 417 277 662 9.44e-17 83.2
MS.gene034753.t1 MTR_7g097020 48.750 80 35 3 5 84 239 312 1.18e-16 82.8
MS.gene034753.t1 MTR_7g053260 43.038 79 39 2 1 79 72 144 4.94e-16 80.5
MS.gene034753.t1 MTR_7g116600 46.237 93 40 4 11 103 82 164 6.10e-16 80.1
MS.gene034753.t1 MTR_1g069845 46.053 76 35 2 5 80 122 191 1.11e-15 79.7
MS.gene034753.t1 MTR_1g069845 46.053 76 35 2 5 80 243 312 1.80e-15 79.3
MS.gene034753.t1 MTR_1g069845 46.053 76 35 2 5 80 239 308 1.86e-15 79.3
MS.gene034753.t1 MTR_2g011140 26.498 317 190 8 13 329 21 294 2.62e-15 77.8
MS.gene034753.t1 MTR_8g077205 44.565 92 39 4 5 94 159 240 4.50e-15 77.8
MS.gene034753.t1 MTR_4g091880 25.362 414 217 15 11 417 9 337 4.96e-15 76.6
MS.gene034753.t1 MTR_8g077205 44.565 92 39 4 5 94 271 352 6.12e-15 77.8
MS.gene034753.t1 MTR_3g115670 26.636 214 116 8 11 206 34 224 3.93e-14 75.1
MS.gene034753.t1 MTR_5g020570 43.299 97 41 6 1 94 265 350 6.84e-14 74.3
MS.gene034753.t1 MTR_5g020570 43.299 97 41 6 1 94 280 365 8.10e-14 73.9
MS.gene034753.t1 MTR_3g078160 46.667 90 41 3 11 99 279 362 9.44e-14 73.6
MS.gene034753.t1 MTR_8g103227 39.773 88 40 3 11 98 399 473 4.62e-13 72.0
MS.gene034753.t1 MTR_1g079450 40.000 90 44 4 5 94 61 140 1.20e-12 69.7
MS.gene034753.t1 MTR_3g466220 42.169 83 42 2 2 84 228 304 1.20e-12 70.5
MS.gene034753.t1 MTR_1g090320 43.836 73 36 2 11 83 517 584 1.26e-12 70.5
MS.gene034753.t1 MTR_3g466220 42.169 83 42 2 2 84 207 283 1.28e-12 70.5
MS.gene034753.t1 MTR_1g090320 43.836 73 36 2 11 83 519 586 1.31e-12 70.5
MS.gene034753.t1 MTR_7g117890 40.964 83 43 2 2 84 250 326 1.40e-11 67.4
MS.gene034753.t1 MTR_2g096850 37.975 79 43 2 1 79 583 655 3.46e-11 65.9
MS.gene034753.t1 MTR_2g096850 37.975 79 43 2 1 79 734 806 4.52e-11 65.5
MS.gene034753.t1 MTR_1g093995 45.714 70 29 3 20 89 1 61 5.86e-11 62.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene034753.t1 AT3G52450 53.725 443 190 6 1 437 1 434 1.16e-156 450
MS.gene034753.t1 AT2G35930 50.794 441 177 6 1 437 6 410 1.17e-154 444
MS.gene034753.t1 AT3G11840 35.043 468 239 9 3 434 6 444 5.11e-80 255
MS.gene034753.t1 AT3G19380 33.953 430 239 9 1 422 8 400 1.22e-51 179
MS.gene034753.t1 AT5G37490 30.947 433 253 15 4 428 28 422 6.98e-47 167
MS.gene034753.t1 AT1G49780 31.448 442 257 11 1 431 8 414 2.14e-44 160
MS.gene034753.t1 AT1G66160 30.095 422 245 14 4 420 30 406 1.55e-42 155
MS.gene034753.t1 AT1G66160 27.488 422 240 15 4 420 30 390 6.78e-30 120
MS.gene034753.t1 AT5G09800 28.995 438 252 15 10 430 14 409 9.91e-30 120
MS.gene034753.t1 AT1G23030 27.098 417 247 14 11 421 245 610 1.50e-29 121
MS.gene034753.t1 AT2G28830 28.910 422 260 18 2 420 178 562 5.20e-29 120
MS.gene034753.t1 AT3G18710 27.765 443 266 13 5 430 10 415 1.81e-27 114
MS.gene034753.t1 AT5G42340 29.831 295 165 8 11 305 294 546 1.63e-25 110
MS.gene034753.t1 AT1G71020 27.294 425 245 14 11 421 99 473 2.40e-25 108
MS.gene034753.t1 AT1G71020 27.294 425 245 14 11 421 247 621 4.16e-25 108
MS.gene034753.t1 AT5G64660 27.130 446 272 15 5 430 8 420 8.12e-25 106
MS.gene034753.t1 AT3G54850 29.773 309 183 12 7 315 248 522 1.28e-24 107
MS.gene034753.t1 AT3G46510 26.841 421 265 16 2 420 250 629 4.96e-24 105
MS.gene034753.t1 AT3G49810 25.352 426 269 10 3 428 62 438 2.30e-22 99.4
MS.gene034753.t1 AT1G67530 26.829 451 260 14 13 417 278 704 2.42e-21 97.4
MS.gene034753.t1 AT1G67530 26.829 451 260 14 13 417 278 704 2.42e-21 97.4
MS.gene034753.t1 AT1G67530 26.829 451 260 14 13 417 278 704 2.42e-21 97.4
MS.gene034753.t1 AT5G65920 24.113 423 274 11 6 428 59 434 4.55e-21 95.5
MS.gene034753.t1 AT5G65920 24.113 423 274 11 6 428 59 434 4.55e-21 95.5
MS.gene034753.t1 AT1G29340 26.708 322 181 10 5 312 303 583 5.45e-20 93.2
MS.gene034753.t1 AT5G01830 26.603 312 178 10 4 307 271 539 2.95e-19 90.9
MS.gene034753.t1 AT1G67530 48.889 90 35 4 13 102 278 356 1.53e-17 85.5
MS.gene034753.t1 AT1G24330 25.508 443 272 17 13 417 281 703 2.24e-17 85.1
MS.gene034753.t1 AT1G24330 25.508 443 272 17 13 417 281 703 2.24e-17 85.1
MS.gene034753.t1 AT1G10560 26.349 315 178 11 11 312 292 565 2.97e-17 84.7
MS.gene034753.t1 AT1G27910 43.269 104 49 4 13 116 285 378 3.79e-17 84.7
MS.gene034753.t1 AT4G21350 25.558 403 247 13 11 411 9 360 1.89e-16 81.3
MS.gene034753.t1 AT3G07360 29.043 303 175 13 11 308 78 345 1.38e-15 79.0
MS.gene034753.t1 AT3G54790 44.304 79 38 2 5 83 200 272 2.10e-14 75.9
MS.gene034753.t1 AT3G54790 44.304 79 38 2 5 83 236 308 2.79e-14 75.5
MS.gene034753.t1 AT3G54790 44.304 79 38 2 5 83 236 308 2.79e-14 75.5
MS.gene034753.t1 AT1G60190 24.513 359 207 12 13 353 284 596 4.05e-14 75.1
MS.gene034753.t1 AT2G23140 39.175 97 49 3 11 107 237 323 1.69e-13 73.2
MS.gene034753.t1 AT2G23140 39.175 97 49 3 11 107 234 320 1.75e-13 73.2
MS.gene034753.t1 AT2G23140 39.175 97 49 3 11 107 234 320 1.75e-13 73.2
MS.gene034753.t1 AT2G23140 39.175 97 49 3 11 107 45 131 1.92e-13 72.8
MS.gene034753.t1 AT2G23140 39.175 97 49 3 11 107 45 131 1.92e-13 72.8
MS.gene034753.t1 AT1G01660 41.333 75 38 3 10 84 501 569 2.08e-12 69.3
MS.gene034753.t1 AT1G01660 41.333 75 38 3 10 84 500 568 2.13e-12 69.3
MS.gene034753.t1 AT3G02840 24.011 354 214 11 82 416 34 351 4.01e-12 67.8
MS.gene034753.t1 AT5G67340 32.540 126 74 4 5 127 238 355 1.14e-11 67.4
MS.gene034753.t1 AT5G67340 32.540 126 74 4 5 127 238 355 1.14e-11 67.4
MS.gene034753.t1 AT2G45920 41.558 77 39 2 10 86 328 398 1.43e-11 66.2
MS.gene034753.t1 AT1G01680 40.789 76 39 2 11 86 237 306 2.21e-11 65.1
MS.gene034753.t1 AT1G68940 28.378 148 81 3 11 155 303 428 6.13e-11 65.5
MS.gene034753.t1 AT1G68940 28.378 148 81 3 11 155 303 428 6.30e-11 65.1
MS.gene034753.t1 AT1G68940 28.378 148 81 3 11 155 250 375 7.39e-11 65.1

Find 47 sgRNAs with CRISPR-Local

Find 69 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTAATTCAACTCGTCGAATT+TGG 0.147235 1.1:+44181503 MS.gene034753:CDS
TTGATGCTTTCTTTGATATC+TGG 0.244295 1.1:-44181463 None:intergenic
TCAAGTTGATAGTGGAAATA+AGG 0.246468 1.1:+44181844 MS.gene034753:CDS
TGCACCATGAATTCTTCTTA+TGG 0.270597 1.1:+44180885 MS.gene034753:CDS
TTCATGAGTTGTAGTGAAAT+AGG 0.280796 1.1:-44180687 None:intergenic
AAAGCCATGTGAAATGATTT+TGG 0.300149 1.1:+44181601 MS.gene034753:CDS
TATGAAGCAAGTAAATTAAA+AGG 0.308972 1.1:-44181932 None:intergenic
TTAATGAGATTATTGCAAAA+AGG 0.328958 1.1:+44181317 MS.gene034753:CDS
TTAAATTGCATTCAAAGTCT+TGG 0.383883 1.1:+44181891 MS.gene034753:CDS
ATGCCTGTTGAGACAGTAAC+TGG 0.387709 1.1:-44180714 None:intergenic
GATTCCATAAGAAGAATTCA+TGG 0.398042 1.1:-44180889 None:intergenic
AGAGTAAAAGCAATTGAATC+AGG 0.420580 1.1:+44181533 MS.gene034753:CDS
TGTTGTTGCAAAGCTTTGTT+TGG 0.427050 1.1:+44181817 MS.gene034753:CDS
TCATGAGTTGTAGTGAAATA+GGG 0.428583 1.1:-44180686 None:intergenic
AAGAATCAGAAGCTTCTTTG+AGG 0.432362 1.1:-44180965 None:intergenic
AATTCATGGTGCACCAAGCT+TGG 0.450350 1.1:-44180875 None:intergenic
AAGTTGTTCATCTTCATGTT+CGG 0.462840 1.1:+44181124 MS.gene034753:CDS
TTTGATGATGATGATGTTGA+AGG 0.466030 1.1:+44181170 MS.gene034753:CDS
GATCCAGTTACTGTCTCAAC+AGG 0.466859 1.1:+44180711 MS.gene034753:CDS
GTTCAAGAAATGTTGCGAAT+TGG 0.480063 1.1:+44181794 MS.gene034753:CDS
TATCGAATCAGCTGGGGCTG+TGG 0.499122 1.1:+44181067 MS.gene034753:CDS
CGACGGTGTATCGAATCAGC+TGG 0.503664 1.1:+44181059 MS.gene034753:CDS
TTGGTTCTTCAAGTTGATAG+TGG 0.510674 1.1:+44181836 MS.gene034753:CDS
AGTCTACGAAGAGTGTGGTT+TGG 0.516469 1.1:-44180849 None:intergenic
ATGTTATGTCAATGTGCTGA+TGG 0.528834 1.1:+44181635 MS.gene034753:CDS
AGGGTTTGGATAAGTAAATG+AGG 0.542957 1.1:-44180996 None:intergenic
GCTTCATACCCAACAACTAG+TGG 0.543682 1.1:+44181947 MS.gene034753:CDS
TTCGTAGACTCATCCAAGCT+TGG 0.549847 1.1:+44180862 MS.gene034753:CDS
GAACTCTTAAGCCATGGATG+TGG 0.556866 1.1:+44181665 MS.gene034753:CDS
ATAAGGCAAAGGAGAAAGCA+AGG 0.557452 1.1:+44181861 MS.gene034753:CDS
CTGATAATTGAAGATTGTAA+AGG 0.558747 1.1:-44181241 None:intergenic
ATTCTTCTTATGGAATCGAA+AGG 0.560631 1.1:+44180895 MS.gene034753:CDS
GACGGTGTATCGAATCAGCT+GGG 0.562113 1.1:+44181060 MS.gene034753:CDS
AGATTTGAACTCTTAAGCCA+TGG 0.566041 1.1:+44181659 MS.gene034753:CDS
TTCGATGCTTTCTCTGTCGT+AGG 0.572900 1.1:-44180739 None:intergenic
TATTTCACTACAACTCATGA+AGG 0.582520 1.1:+44180689 MS.gene034753:CDS
TGATAGTGGAAATAAGGCAA+AGG 0.584798 1.1:+44181850 MS.gene034753:CDS
AGCACCAAAATCATTTCACA+TGG 0.599883 1.1:-44181605 None:intergenic
AATCTTCAATTATCAGAACA+AGG 0.603602 1.1:+44181248 MS.gene034753:CDS
CAATAGCTAAACCACATCCA+TGG 0.618916 1.1:-44181676 None:intergenic
CCGTCGATTTGACTCACTCT+CGG 0.622821 1.1:-44181042 None:intergenic
CTTCATACCCAACAACTAGT+GGG 0.626704 1.1:+44181948 MS.gene034753:CDS
TAAGGCAAAGGAGAAAGCAA+GGG 0.629025 1.1:+44181862 MS.gene034753:CDS
GGATGAGTCTACGAAGAGTG+TGG 0.646535 1.1:-44180854 None:intergenic
CCGAGAGTGAGTCAAATCGA+CGG 0.693824 1.1:+44181042 MS.gene034753:CDS
ACGGTGTATCGAATCAGCTG+GGG 0.702393 1.1:+44181061 MS.gene034753:CDS
TGGCTAATGATAGAGCTGTG+AGG 0.767301 1.1:+44181729 MS.gene034753:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TATGAAGCAAGTAAATTAAA+AGG - chr1.1:44181935-44181954 None:intergenic 20.0%
!! TTAATGAGATTATTGCAAAA+AGG + chr1.1:44181317-44181336 MS.gene034753:CDS 20.0%
!!! AATTGTTTTGAGCTTTTTTA+GGG - chr1.1:44181018-44181037 None:intergenic 20.0%
! AATCTTCAATTATCAGAACA+AGG + chr1.1:44181248-44181267 MS.gene034753:CDS 25.0%
! ACTCTCTTAAACTTCAAAAA+TGG + chr1.1:44181278-44181297 MS.gene034753:CDS 25.0%
! CTGATAATTGAAGATTGTAA+AGG - chr1.1:44181244-44181263 None:intergenic 25.0%
! TTAAATTGCATTCAAAGTCT+TGG + chr1.1:44181891-44181910 MS.gene034753:CDS 25.0%
!! TGTTTCAAAGAAGATTTTGA+GGG + chr1.1:44181697-44181716 MS.gene034753:CDS 25.0%
!! TTGTTTCAAAGAAGATTTTG+AGG + chr1.1:44181696-44181715 MS.gene034753:CDS 25.0%
!!! CAATTGTTTTGAGCTTTTTT+AGG - chr1.1:44181019-44181038 None:intergenic 25.0%
!!! TTTGCTTTTGACTTCAAAAT+AGG + chr1.1:44181194-44181213 MS.gene034753:CDS 25.0%
AACTAACTCGATGAAAAACT+CGG - chr1.1:44181429-44181448 None:intergenic 30.0%
AAGTTGTTCATCTTCATGTT+CGG + chr1.1:44181124-44181143 MS.gene034753:CDS 30.0%
AGAGTAAAAGCAATTGAATC+AGG + chr1.1:44181533-44181552 MS.gene034753:CDS 30.0%
ATTCTTCTTATGGAATCGAA+AGG + chr1.1:44180895-44180914 MS.gene034753:CDS 30.0%
GAAATAGGGCAAAGAAAAAA+TGG - chr1.1:44180675-44180694 None:intergenic 30.0%
GATTCCATAAGAAGAATTCA+TGG - chr1.1:44180892-44180911 None:intergenic 30.0%
TATTTCACTACAACTCATGA+AGG + chr1.1:44180689-44180708 MS.gene034753:CDS 30.0%
TCATGAGTTGTAGTGAAATA+GGG - chr1.1:44180689-44180708 None:intergenic 30.0%
TTAATTCAACTCGTCGAATT+TGG + chr1.1:44181503-44181522 MS.gene034753:CDS 30.0%
TTCATGAGTTGTAGTGAAAT+AGG - chr1.1:44180690-44180709 None:intergenic 30.0%
TTGATGCTTTCTTTGATATC+TGG - chr1.1:44181466-44181485 None:intergenic 30.0%
! AAAGCCATGTGAAATGATTT+TGG + chr1.1:44181601-44181620 MS.gene034753:CDS 30.0%
!! TCAAGTTGATAGTGGAAATA+AGG + chr1.1:44181844-44181863 MS.gene034753:CDS 30.0%
!! TTTGATGATGATGATGTTGA+AGG + chr1.1:44181170-44181189 MS.gene034753:CDS 30.0%
!!! TGAAATGATTTTGGTGCTTT+TGG + chr1.1:44181610-44181629 MS.gene034753:CDS 30.0%
!!! TTTAGATTGGCTAGTTTTGA+TGG - chr1.1:44181404-44181423 None:intergenic 30.0%
!!! TTTTGAGCTTTTTTAGGGTT+TGG - chr1.1:44181013-44181032 None:intergenic 30.0%
AAGAATCAGAAGCTTCTTTG+AGG - chr1.1:44180968-44180987 None:intergenic 35.0%
AGATTTGAACTCTTAAGCCA+TGG + chr1.1:44181659-44181678 MS.gene034753:CDS 35.0%
AGCACCAAAATCATTTCACA+TGG - chr1.1:44181608-44181627 None:intergenic 35.0%
AGGGTTTGGATAAGTAAATG+AGG - chr1.1:44180999-44181018 None:intergenic 35.0%
ATGTTATGTCAATGTGCTGA+TGG + chr1.1:44181635-44181654 MS.gene034753:CDS 35.0%
GAAAAACTCGGTCTTTAGAT+TGG - chr1.1:44181417-44181436 None:intergenic 35.0%
GTTCAAGAAATGTTGCGAAT+TGG + chr1.1:44181794-44181813 MS.gene034753:CDS 35.0%
TGCACCATGAATTCTTCTTA+TGG + chr1.1:44180885-44180904 MS.gene034753:CDS 35.0%
! CGAAAAATGGCTCTTTTCAT+CGG + chr1.1:44180758-44180777 MS.gene034753:CDS 35.0%
!! ACAGAGAAAGCATCGAAAAA+TGG + chr1.1:44180745-44180764 MS.gene034753:CDS 35.0%
!! GATTTTGAGGGTTTCAACAA+TGG + chr1.1:44181709-44181728 MS.gene034753:CDS 35.0%
!! TGATAGTGGAAATAAGGCAA+AGG + chr1.1:44181850-44181869 MS.gene034753:CDS 35.0%
!! TGTTGTTGCAAAGCTTTGTT+TGG + chr1.1:44181817-44181836 MS.gene034753:CDS 35.0%
!! TTGGTTCTTCAAGTTGATAG+TGG + chr1.1:44181836-44181855 MS.gene034753:CDS 35.0%
!! TTTGAGGAGTTTTTCGATGA+GGG - chr1.1:44180952-44180971 None:intergenic 35.0%
!!! GTTTTTGTTGTTGGAGGTTT+TGG - chr1.1:44180930-44180949 None:intergenic 35.0%
ATAAGGCAAAGGAGAAAGCA+AGG + chr1.1:44181861-44181880 MS.gene034753:CDS 40.0%
CAATAGCTAAACCACATCCA+TGG - chr1.1:44181679-44181698 None:intergenic 40.0%
CTTCATACCCAACAACTAGT+GGG + chr1.1:44181948-44181967 MS.gene034753:CDS 40.0%
TAAGGCAAAGGAGAAAGCAA+GGG + chr1.1:44181862-44181881 MS.gene034753:CDS 40.0%
!! CTTTGAGGAGTTTTTCGATG+AGG - chr1.1:44180953-44180972 None:intergenic 40.0%
!! TCGATGAGGGTTTTTGTTGT+TGG - chr1.1:44180939-44180958 None:intergenic 40.0%
!!! ATGAGGGTTTTTGTTGTTGG+AGG - chr1.1:44180936-44180955 None:intergenic 40.0%
!!! GTGAGTTGTTGTTTTGTGAC+AGG - chr1.1:44180798-44180817 None:intergenic 40.0%
AATTCATGGTGCACCAAGCT+TGG - chr1.1:44180878-44180897 None:intergenic 45.0%
ATGCCTGTTGAGACAGTAAC+TGG - chr1.1:44180717-44180736 None:intergenic 45.0%
GAACTCTTAAGCCATGGATG+TGG + chr1.1:44181665-44181684 MS.gene034753:CDS 45.0%
GATCCAGTTACTGTCTCAAC+AGG + chr1.1:44180711-44180730 MS.gene034753:CDS 45.0%
GCTTCATACCCAACAACTAG+TGG + chr1.1:44181947-44181966 MS.gene034753:CDS 45.0%
TGGCTAATGATAGAGCTGTG+AGG + chr1.1:44181729-44181748 MS.gene034753:CDS 45.0%
TTCGATGCTTTCTCTGTCGT+AGG - chr1.1:44180742-44180761 None:intergenic 45.0%
TTCGTAGACTCATCCAAGCT+TGG + chr1.1:44180862-44180881 MS.gene034753:CDS 45.0%
! AGTCTACGAAGAGTGTGGTT+TGG - chr1.1:44180852-44180871 None:intergenic 45.0%
!!! GTTGTTGGAGGTTTTGGAGT+TGG - chr1.1:44180924-44180943 None:intergenic 45.0%
ACGGTGTATCGAATCAGCTG+GGG + chr1.1:44181061-44181080 MS.gene034753:CDS 50.0%
CCGAGAGTGAGTCAAATCGA+CGG + chr1.1:44181042-44181061 MS.gene034753:CDS 50.0%
GACGGTGTATCGAATCAGCT+GGG + chr1.1:44181060-44181079 MS.gene034753:CDS 50.0%
GGATGAGTCTACGAAGAGTG+TGG - chr1.1:44180857-44180876 None:intergenic 50.0%
!! CCGTCGATTTGACTCACTCT+CGG - chr1.1:44181045-44181064 None:intergenic 50.0%
CGACGGTGTATCGAATCAGC+TGG + chr1.1:44181059-44181078 MS.gene034753:CDS 55.0%
TATCGAATCAGCTGGGGCTG+TGG + chr1.1:44181067-44181086 MS.gene034753:CDS 55.0%


Chromosome Type Strat End Strand Name
chr1.1 gene 44180648 44181973 44180648 ID=MS.gene034753
chr1.1 mRNA 44180648 44181973 44180648 ID=MS.gene034753.t1;Parent=MS.gene034753
chr1.1 exon 44180648 44181973 44180648 ID=MS.gene034753.t1.exon1;Parent=MS.gene034753.t1
chr1.1 CDS 44180648 44181973 44180648 ID=cds.MS.gene034753.t1;Parent=MS.gene034753.t1
Gene Sequence

>MS.gene034753

ATGAATCAAGATATCAAAGTTACACCATTTTTTCTTTGCCCTATTTCACTACAACTCATGAAGGATCCAGTTACTGTCTCAACAGGCATAACCTACGACAGAGAAAGCATCGAAAAATGGCTCTTTTCATCGGAAAACAAAACATGTCCTGTCACAAAACAACAACTCACACATGATGCAAATGATCTCATTATTCTCACTCCAAACCACACTCTTCGTAGACTCATCCAAGCTTGGTGCACCATGAATTCTTCTTATGGAATCGAAAGGATTCCAACTCCAAAACCTCCAACAACAAAAACCCTCATCGAAAAACTCCTCAAAGAAGCTTCTGATTCTTCAGATTCACCTCATTTACTTATCCAAACCCTAAAAAAGCTCAAAACAATTGCATCCGAGAGTGAGTCAAATCGACGGTGTATCGAATCAGCTGGGGCTGTGGAGTTCTTAGCATCAATAGTTACAAAAAACAACACAAGTTGTTCATCTTCATGTTCGGCAACAGAATTAGTTGAAGCTAGCTTTGATGATGATGATGTTGAAGGTTTTGCTTTTGACTTCAAAATAGGTGCAGAAGATGAAGCTATAAACATCCTTTACAATCTTCAATTATCAGAACAAGGTTTGAAAACTCTCTTAAACTTCAAAAATGGAGAAGTTTTAGATTCTTTAATGAGATTATTGCAAAAAGGTAACTACGATTCAAGAACATACGCAGTTTGTTTGCTGAAATCTATATCAAAACTTGCTGATCCATCAAAACTAGCCAATCTAAAGACCGAGTTTTTCATCGAGTTAGTTCAACTTCTCAAAGACCAGATATCAAAGAAAGCATCAAAAGCAACACTACAAACGTTAATTCAACTCGTCGAATTTGGAAGAAATAGAGTAAAAGCAATTGAATCAGGTTGTGTTTCTGCTTTGATAGAACTTCTTCTTGATTGCAAAGAAAGAAAGCCATGTGAAATGATTTTGGTGCTTTTGGAGATGTTATGTCAATGTGCTGATGGAAGATTTGAACTCTTAAGCCATGGATGTGGTTTAGCTATTGTTTCAAAGAAGATTTTGAGGGTTTCAACAATGGCTAATGATAGAGCTGTGAGGATTCTTCTTTCTGTTTCAAGATTTTCTGCTACACATTTTGTTGTTCAAGAAATGTTGCGAATTGGTGTTGTTGCAAAGCTTTGTTTGGTTCTTCAAGTTGATAGTGGAAATAAGGCAAAGGAGAAAGCAAGGGAGATTCTTAAATTGCATTCAAAGTCTTGGATGAATTCTCATTGCATACCTTTTAATTTACTTGCTTCATACCCAACAACTAGTGGGTGA
Protein sequence

>MS.gene034753.t1

MNQDIKVTPFFLCPISLQLMKDPVTVSTGITYDRESIEKWLFSSENKTCPVTKQQLTHDANDLIILTPNHTLRRLIQAWCTMNSSYGIERIPTPKPPTTKTLIEKLLKEASDSSDSPHLLIQTLKKLKTIASESESNRRCIESAGAVEFLASIVTKNNTSCSSSCSATELVEASFDDDDVEGFAFDFKIGAEDEAINILYNLQLSEQGLKTLLNFKNGEVLDSLMRLLQKGNYDSRTYAVCLLKSISKLADPSKLANLKTEFFIELVQLLKDQISKKASKATLQTLIQLVEFGRNRVKAIESGCVSALIELLLDCKERKPCEMILVLLEMLCQCADGRFELLSHGCGLAIVSKKILRVSTMANDRAVRILLSVSRFSATHFVVQEMLRIGVVAKLCLVLQVDSGNKAKEKAREILKLHSKSWMNSHCIPFNLLASYPTTSG