AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene025667

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene025667.t1 MTR_7g106340 98.337 421 6 1 1 420 1 421 0.0 850
MS.gene025667.t1 MTR_1g056880 64.302 437 133 5 1 417 1 434 0.0 543
MS.gene025667.t1 MTR_1g056870 63.616 437 136 5 1 417 1 434 0.0 533
MS.gene025667.t1 MTR_1g056840 60.641 437 123 7 1 417 1 408 1.64e-176 499
MS.gene025667.t1 MTR_2g087350 58.413 416 157 5 4 417 2 403 6.63e-159 454
MS.gene025667.t1 MTR_1g056910 43.510 416 219 6 4 415 2 405 2.10e-111 333
MS.gene025667.t1 MTR_4g051515 40.000 425 226 10 5 416 3 411 2.23e-94 290
MS.gene025667.t1 MTR_3g065080 34.123 422 252 11 4 416 32 436 1.07e-59 201
MS.gene025667.t1 MTR_5g077510 32.706 425 247 13 5 413 32 433 5.68e-56 191
MS.gene025667.t1 MTR_4g085720 33.086 405 240 14 6 402 12 393 1.45e-49 173
MS.gene025667.t1 MTR_6g071340 29.157 415 251 12 5 397 2 395 1.53e-49 173
MS.gene025667.t1 MTR_5g048050 30.275 436 261 14 5 416 22 438 6.62e-49 172
MS.gene025667.t1 MTR_8g092870 31.343 402 253 11 6 397 8 396 1.93e-40 149
MS.gene025667.t1 MTR_3g095730 31.738 397 256 11 6 397 11 397 4.06e-39 145
MS.gene025667.t1 MTR_3g096370 29.902 408 259 13 5 402 7 397 2.72e-37 140
MS.gene025667.t1 MTR_4g063800 29.440 411 247 12 2 400 249 628 2.35e-35 138
MS.gene025667.t1 MTR_5g015210 27.068 399 265 8 7 405 66 438 5.39e-32 126
MS.gene025667.t1 MTR_7g059405 26.260 377 238 9 8 370 264 614 1.16e-26 112
MS.gene025667.t1 MTR_4g485520 29.642 307 177 11 4 296 101 382 2.35e-26 110
MS.gene025667.t1 MTR_4g485520 29.642 307 177 11 4 296 269 550 4.96e-26 110
MS.gene025667.t1 MTR_1g017770 27.962 422 257 12 7 415 44 431 6.19e-26 109
MS.gene025667.t1 MTR_7g078330 30.612 294 166 10 8 291 274 539 1.60e-25 109
MS.gene025667.t1 MTR_2g018010 27.036 307 178 9 6 291 290 571 2.71e-24 105
MS.gene025667.t1 MTR_3g078160 30.726 358 213 16 9 353 276 611 3.67e-24 105
MS.gene025667.t1 MTR_3g078160 30.726 358 213 16 9 353 276 611 4.47e-24 105
MS.gene025667.t1 MTR_1g094215 29.795 292 176 8 8 291 64 334 5.24e-24 103
MS.gene025667.t1 MTR_5g083030 25.266 376 230 13 6 355 291 641 9.84e-24 104
MS.gene025667.t1 MTR_4g107010 28.750 400 256 15 9 397 281 662 1.09e-23 104
MS.gene025667.t1 MTR_1g094215 29.795 292 176 8 8 291 247 517 1.68e-23 103
MS.gene025667.t1 MTR_5g034440 28.226 372 231 15 12 368 284 634 3.67e-22 99.4
MS.gene025667.t1 MTR_4g028960 28.358 268 152 10 5 251 277 525 2.38e-20 94.0
MS.gene025667.t1 MTR_4g091880 30.149 335 197 10 8 337 5 307 2.89e-20 92.0
MS.gene025667.t1 MTR_4g091880 29.091 330 179 9 8 337 5 279 3.90e-20 91.3
MS.gene025667.t1 MTR_3g078160 33.200 250 144 11 9 250 276 510 1.36e-19 91.3
MS.gene025667.t1 MTR_2g011140 27.526 287 181 8 14 295 21 285 1.98e-18 86.7
MS.gene025667.t1 MTR_7g116600 26.821 302 183 12 4 292 74 350 9.98e-17 82.4
MS.gene025667.t1 MTR_3g085610 44.186 86 40 3 9 94 281 358 2.00e-16 82.0
MS.gene025667.t1 MTR_7g053260 48.148 81 37 3 6 86 76 151 2.17e-16 81.3
MS.gene025667.t1 MTR_1g069845 47.945 73 34 3 6 77 122 191 3.66e-16 80.9
MS.gene025667.t1 MTR_1g069845 47.945 73 34 3 6 77 243 312 6.33e-16 80.5
MS.gene025667.t1 MTR_1g069845 47.222 72 36 2 6 77 239 308 6.48e-16 80.5
MS.gene025667.t1 MTR_8g103227 36.441 118 66 2 9 118 396 512 1.54e-15 79.7
MS.gene025667.t1 MTR_7g097020 45.333 75 39 2 6 80 239 311 1.68e-14 75.9
MS.gene025667.t1 MTR_8g080280 23.831 449 272 15 9 404 283 714 2.21e-14 75.5
MS.gene025667.t1 MTR_3g115670 25.168 298 177 9 12 299 34 295 7.29e-14 73.9
MS.gene025667.t1 MTR_8g077205 26.720 378 216 19 9 375 164 491 1.08e-13 73.6
MS.gene025667.t1 MTR_8g077205 26.720 378 216 19 9 375 276 603 1.32e-13 73.2
MS.gene025667.t1 MTR_1g090320 50.000 68 33 1 9 76 514 580 2.42e-13 72.8
MS.gene025667.t1 MTR_1g090320 50.000 68 33 1 9 76 516 582 2.46e-13 72.8
MS.gene025667.t1 MTR_3g466220 46.053 76 37 3 6 80 210 282 2.94e-13 72.0
MS.gene025667.t1 MTR_3g466220 46.053 76 37 3 6 80 231 303 2.97e-13 72.0
MS.gene025667.t1 MTR_1g079450 38.235 102 57 4 1 102 56 151 4.41e-13 70.9
MS.gene025667.t1 MTR_5g032010 45.714 70 36 2 7 76 731 798 6.60e-13 71.2
MS.gene025667.t1 MTR_2g096850 46.575 73 37 2 4 76 585 655 3.14e-12 68.9
MS.gene025667.t1 MTR_2g096850 46.575 73 37 2 4 76 736 806 3.24e-12 68.9
MS.gene025667.t1 MTR_5g020570 40.909 88 46 4 4 91 269 350 3.98e-12 68.6
MS.gene025667.t1 MTR_5g020570 40.909 88 46 4 4 91 284 365 4.84e-12 68.6
MS.gene025667.t1 MTR_1g093965 52.459 61 27 2 21 81 1 59 5.21e-12 65.1
MS.gene025667.t1 MTR_1g100820 46.479 71 36 2 9 79 649 717 7.95e-12 67.8
MS.gene025667.t1 MTR_1g100820 46.479 71 36 2 9 79 647 715 8.23e-12 67.4
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene025667.t1 AT3G52450 59.132 438 154 7 1 417 1 434 4.35e-180 509
MS.gene025667.t1 AT2G35930 60.000 420 150 7 1 417 6 410 8.24e-177 499
MS.gene025667.t1 AT3G11840 37.472 451 234 7 2 414 4 444 6.67e-89 277
MS.gene025667.t1 AT3G19380 35.385 390 226 8 6 386 12 384 9.89e-62 206
MS.gene025667.t1 AT1G49780 33.735 415 251 10 6 411 12 411 2.73e-56 191
MS.gene025667.t1 AT1G66160 28.537 417 231 10 5 397 30 403 1.76e-46 166
MS.gene025667.t1 AT5G37490 30.424 401 257 12 3 397 26 410 3.69e-46 165
MS.gene025667.t1 AT3G18710 30.392 408 259 12 1 397 1 394 6.18e-34 131
MS.gene025667.t1 AT1G66160 25.899 417 226 11 5 397 30 387 9.91e-34 130
MS.gene025667.t1 AT5G09800 27.848 395 262 9 8 397 11 387 3.98e-33 129
MS.gene025667.t1 AT1G23030 29.808 312 184 10 4 307 237 521 1.31e-31 127
MS.gene025667.t1 AT1G71020 28.750 320 186 9 4 307 91 384 2.44e-30 122
MS.gene025667.t1 AT1G71020 28.750 320 186 9 4 307 239 532 6.09e-30 122
MS.gene025667.t1 AT3G46510 28.467 411 239 13 8 400 256 629 2.00e-29 121
MS.gene025667.t1 AT5G65920 27.543 403 258 10 7 405 59 431 3.18e-29 119
MS.gene025667.t1 AT5G65920 27.543 403 258 10 7 405 59 431 3.18e-29 119
MS.gene025667.t1 AT5G64660 27.494 411 261 13 6 398 8 399 7.94e-29 117
MS.gene025667.t1 AT3G49810 26.650 394 257 9 7 397 63 427 1.54e-28 117
MS.gene025667.t1 AT5G42340 30.605 281 167 9 8 284 290 546 8.98e-27 113
MS.gene025667.t1 AT2G28830 30.744 309 172 11 2 293 178 461 3.36e-26 111
MS.gene025667.t1 AT3G54850 28.328 293 180 8 8 291 248 519 5.30e-26 110
MS.gene025667.t1 AT1G29340 26.570 414 256 14 6 400 303 687 1.56e-24 106
MS.gene025667.t1 AT4G21350 28.739 341 207 10 6 341 3 312 8.37e-23 99.8
MS.gene025667.t1 AT1G10560 26.979 341 213 11 2 326 280 600 4.83e-22 99.4
MS.gene025667.t1 AT5G01830 28.276 290 175 9 5 284 271 537 1.12e-19 92.0
MS.gene025667.t1 AT1G60190 26.524 328 205 12 14 326 284 590 1.60e-18 88.6
MS.gene025667.t1 AT3G02840 26.377 345 223 13 85 412 40 370 2.83e-17 83.6
MS.gene025667.t1 AT3G07360 27.027 296 180 10 6 287 72 345 7.61e-17 82.8
MS.gene025667.t1 AT1G67530 47.059 85 39 3 9 93 273 351 5.31e-16 80.5
MS.gene025667.t1 AT5G18320 29.617 287 182 8 2 284 66 336 6.21e-16 79.7
MS.gene025667.t1 AT1G67530 47.059 85 39 3 9 93 273 351 6.71e-16 80.5
MS.gene025667.t1 AT1G67530 47.059 85 39 3 9 93 273 351 6.71e-16 80.5
MS.gene025667.t1 AT1G67530 47.059 85 39 3 9 93 273 351 6.71e-16 80.5
MS.gene025667.t1 AT1G27910 47.059 85 39 3 9 93 280 358 3.20e-15 78.2
MS.gene025667.t1 AT5G65500 46.914 81 41 2 4 84 719 797 4.12e-15 78.2
MS.gene025667.t1 AT5G65500 46.914 81 41 2 4 84 711 789 4.14e-15 78.2
MS.gene025667.t1 AT1G24330 47.059 85 39 4 9 93 276 354 8.72e-15 77.0
MS.gene025667.t1 AT1G24330 47.059 85 39 4 9 93 276 354 8.72e-15 77.0
MS.gene025667.t1 AT5G18340 28.296 311 187 13 2 299 68 355 1.22e-14 75.9
MS.gene025667.t1 AT3G54790 44.000 75 40 2 6 80 200 272 9.73e-14 73.6
MS.gene025667.t1 AT1G01660 42.466 73 40 2 9 81 499 569 1.05e-13 73.2
MS.gene025667.t1 AT1G01660 42.466 73 40 2 9 81 498 568 1.07e-13 73.2
MS.gene025667.t1 AT5G67340 46.667 75 38 2 6 80 238 310 1.10e-13 73.6
MS.gene025667.t1 AT5G67340 46.667 75 38 2 6 80 238 310 1.10e-13 73.6
MS.gene025667.t1 AT3G54790 44.000 75 40 2 6 80 236 308 1.25e-13 73.6
MS.gene025667.t1 AT3G54790 44.000 75 40 2 6 80 236 308 1.25e-13 73.6
MS.gene025667.t1 AT2G45920 44.737 76 40 2 7 82 324 397 2.12e-13 72.0
MS.gene025667.t1 AT5G57035 43.478 69 37 2 8 76 708 774 4.36e-13 71.6
MS.gene025667.t1 AT2G23140 37.634 93 52 3 12 104 237 323 8.27e-13 70.9
MS.gene025667.t1 AT2G23140 37.634 93 52 3 12 104 234 320 8.48e-13 70.9
MS.gene025667.t1 AT2G23140 37.634 93 52 3 12 104 234 320 8.48e-13 70.9
MS.gene025667.t1 AT1G68940 27.564 156 82 4 12 158 303 436 9.13e-13 70.9
MS.gene025667.t1 AT2G23140 37.634 93 52 3 12 104 45 131 9.39e-13 70.5
MS.gene025667.t1 AT2G23140 37.634 93 52 3 12 104 45 131 9.39e-13 70.5
MS.gene025667.t1 AT1G68940 27.564 156 82 4 12 158 250 383 9.46e-13 70.9
MS.gene025667.t1 AT1G68940 27.564 156 82 4 12 158 303 436 1.03e-12 70.9
MS.gene025667.t1 AT4G36550 43.243 74 40 2 8 81 219 290 1.36e-12 70.1
MS.gene025667.t1 AT2G19410 45.070 71 36 2 6 76 709 776 3.10e-12 68.9
MS.gene025667.t1 AT2G19410 45.070 71 36 2 6 76 744 811 3.45e-12 68.9
MS.gene025667.t1 AT2G19410 45.070 71 36 2 6 76 723 790 3.50e-12 68.9
MS.gene025667.t1 AT3G61390 41.096 73 41 2 7 79 277 347 6.52e-12 67.0
MS.gene025667.t1 AT2G45910 44.928 69 36 2 8 76 763 829 6.91e-12 68.2
MS.gene025667.t1 AT2G45910 44.928 69 36 2 8 76 763 829 6.91e-12 68.2
MS.gene025667.t1 AT3G61390 41.096 73 41 2 7 79 352 422 7.31e-12 67.4
MS.gene025667.t1 AT5G18330 27.513 378 242 16 2 372 59 411 7.31e-12 67.4
MS.gene025667.t1 AT1G76390 42.029 69 35 2 12 76 29 96 1.15e-11 67.4
MS.gene025667.t1 AT1G76390 42.029 69 35 2 12 76 29 96 1.15e-11 67.4
MS.gene025667.t1 AT1G01680 46.377 69 35 2 12 80 237 303 1.40e-11 65.5
MS.gene025667.t1 AT1G20780 41.096 73 38 2 12 80 27 98 2.27e-11 66.2
MS.gene025667.t1 AT1G20780 41.096 73 38 2 12 80 27 98 2.27e-11 66.2
MS.gene025667.t1 AT1G20780 41.096 73 38 2 12 80 27 98 2.27e-11 66.2

Find 51 sgRNAs with CRISPR-Local

Find 62 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TAATTAATTTCACTGGTAAT+TGG 0.118200 7.1:+6406657 None:intergenic
CTTCATGATTTCTAATGATA+TGG 0.167930 7.1:+6407863 None:intergenic
TTGTTTCTAAGAAGATTCTA+AGG 0.280230 7.1:-6406918 MS.gene025667:CDS
AATTAATTTCACTGGTAATT+GGG 0.298853 7.1:+6406658 None:intergenic
AGACTTAGATCTATGGCTTC+TGG 0.311800 7.1:-6407546 MS.gene025667:CDS
ATACCTGTTGAGACTGTTAC+TGG 0.321164 7.1:+6407837 None:intergenic
CCCATGGACAGAGTGCAATT+AGG 0.328586 7.1:+6407115 None:intergenic
CTTGAAAAGACTTAGATCTA+TGG 0.330588 7.1:-6407553 MS.gene025667:CDS
AGCATTTCTTGAACAACATT+AGG 0.349387 7.1:+6406829 None:intergenic
AAAACCAACATCATTTCATT+TGG 0.354293 7.1:+6407009 None:intergenic
TTCATGATTTCTAATGATAT+GGG 0.374449 7.1:+6407864 None:intergenic
CCATGGACAGAGTGCAATTA+GGG 0.383112 7.1:+6407116 None:intergenic
AACAAAAGTTCTATTAAAAC+AGG 0.395977 7.1:+6407054 None:intergenic
CCCTAATTGCACTCTGTCCA+TGG 0.442705 7.1:-6407116 MS.gene025667:CDS
ATTGACTTTGTTAACAACTC+TGG 0.442706 7.1:-6407441 MS.gene025667:CDS
TTGATTCTGTTTCTTCCCCA+TGG 0.450469 7.1:+6407099 None:intergenic
AAACTACTTGCTTTCAGAAA+CGG 0.455035 7.1:-6407339 MS.gene025667:CDS
AATCTTCATGTGTCTGAAGC+TGG 0.462024 7.1:-6407369 MS.gene025667:CDS
TGTTGTGGCTAAGCTTTGCT+TGG 0.464959 7.1:-6406797 MS.gene025667:CDS
AGAATCAAAGGTGTTGAAGC+TGG 0.489133 7.1:-6407084 MS.gene025667:CDS
TTAACAAAAGTTATGCAGAA+AGG 0.492717 7.1:-6407300 MS.gene025667:CDS
GATCCAGTAACAGTCTCAAC+AGG 0.492806 7.1:-6407840 MS.gene025667:CDS
AGATACTTAAGATGCATGCT+AGG 0.498217 7.1:-6406729 MS.gene025667:CDS
ATTAATTTCACTGGTAATTG+GGG 0.513713 7.1:+6406659 None:intergenic
AATCTTTGTCAGTGTGCTGA+AGG 0.523947 7.1:-6406979 MS.gene025667:CDS
ACGCTTCACAAGGCATTGAA+AGG 0.524077 7.1:-6407668 MS.gene025667:CDS
CCTAATTGCACTCTGTCCAT+GGG 0.527316 7.1:-6407115 MS.gene025667:CDS
TTAGAAGACTCATTCAAGCT+TGG 0.528792 7.1:-6407701 MS.gene025667:CDS
AAAACCAAATGAAATGATGT+TGG 0.529378 7.1:-6407013 MS.gene025667:CDS
TATGAAGAAAGCAAATTACT+AGG 0.534963 7.1:+6406682 None:intergenic
AGCAAATTACTAGGTATGCA+TGG 0.539218 7.1:+6406691 None:intergenic
GTTCAAGAAATGCTTAAACT+TGG 0.545979 7.1:-6406820 MS.gene025667:CDS
GAATGAGTCTTCTAAGAGTG+TGG 0.559382 7.1:+6407709 None:intergenic
TGGGGAAGAAACAGAATCAA+AGG 0.566142 7.1:-6407096 MS.gene025667:CDS
AGTCTTCTAAGAGTGTGGTT+TGG 0.569998 7.1:+6407714 None:intergenic
TGATTGTGGAAGTAAGACTA+AGG 0.572296 7.1:-6406764 MS.gene025667:CDS
TTAAGATGCATGCTAGGGCA+TGG 0.573333 7.1:-6406723 MS.gene025667:CDS
TGTTTCTAAGAAGATTCTAA+GGG 0.577022 7.1:-6406917 MS.gene025667:CDS
TTCAATACTTTCTCTGTCGT+AGG 0.588046 7.1:+6407812 None:intergenic
AAACGTTGCATAGAAGATGC+AGG 0.588793 7.1:-6407510 MS.gene025667:CDS
ATGGGGCAGACAAAGAATGA+AGG 0.611200 7.1:+6407882 None:intergenic
CATATCATTAGAAATCATGA+AGG 0.612177 7.1:-6407862 MS.gene025667:CDS
TCATGATTTCTAATGATATG+GGG 0.613195 7.1:+6407865 None:intergenic
AATGCTTAAACTTGGTGTTG+TGG 0.614712 7.1:-6406812 MS.gene025667:CDS
GATACTTAAGATGCATGCTA+GGG 0.623745 7.1:-6406728 MS.gene025667:CDS
TGTACATTAAACGCTTCACA+AGG 0.640683 7.1:-6407678 MS.gene025667:CDS
TTGGTTCTTCAAGTTGATTG+TGG 0.650079 7.1:-6406778 MS.gene025667:CDS
TATGGATCATGATGAGATCG+AGG 0.658015 7.1:-6407907 MS.gene025667:CDS
CTAATTGCACTCTGTCCATG+GGG 0.676561 7.1:-6407114 MS.gene025667:CDS
AGATGCATGCTAGGGCATGG+AGG 0.701659 7.1:-6406720 MS.gene025667:CDS
TTGCGAATGATAGAGCTGTG+AGG 0.775637 7.1:-6406885 MS.gene025667:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AACAAAAGTTCTATTAAAAC+AGG + chr7.1:6407521-6407540 None:intergenic 20.0%
!! TTCATGATTTCTAATGATAT+GGG + chr7.1:6406711-6406730 None:intergenic 20.0%
! AAAACCAAATGAAATGATGT+TGG - chr7.1:6407559-6407578 MS.gene025667:CDS 25.0%
! AAAACCAACATCATTTCATT+TGG + chr7.1:6407566-6407585 None:intergenic 25.0%
! CATATCATTAGAAATCATGA+AGG - chr7.1:6406710-6406729 MS.gene025667:CDS 25.0%
! CTTCATGATTTCTAATGATA+TGG + chr7.1:6406712-6406731 None:intergenic 25.0%
! TATGAAGAAAGCAAATTACT+AGG + chr7.1:6407893-6407912 None:intergenic 25.0%
! TCATGATTTCTAATGATATG+GGG + chr7.1:6406710-6406729 None:intergenic 25.0%
! TTAACAAAAGTTATGCAGAA+AGG - chr7.1:6407272-6407291 MS.gene025667:CDS 25.0%
!! TGTTTCTAAGAAGATTCTAA+GGG - chr7.1:6407655-6407674 MS.gene025667:CDS 25.0%
!! TTTCTGCATAACTTTTGTTA+AGG + chr7.1:6407273-6407292 None:intergenic 25.0%
!!! ACAGAGAAAGTATTGAAAAA+TGG - chr7.1:6406766-6406785 MS.gene025667:CDS 25.0%
!!! TGAATTAGTACAAGTTTTGA+AGG - chr7.1:6407394-6407413 MS.gene025667:CDS 25.0%
!!! TTGTTTCTAAGAAGATTCTA+AGG - chr7.1:6407654-6407673 MS.gene025667:CDS 25.0%
!!! TTTGATGAGTTTTGTGATTT+GGG + chr7.1:6406961-6406980 None:intergenic 25.0%
AAACTACTTGCTTTCAGAAA+CGG - chr7.1:6407233-6407252 MS.gene025667:CDS 30.0%
AGCATTTCTTGAACAACATT+AGG + chr7.1:6407746-6407765 None:intergenic 30.0%
CTTGAAAAGACTTAGATCTA+TGG - chr7.1:6407019-6407038 MS.gene025667:CDS 30.0%
GTTCAAGAAATGCTTAAACT+TGG - chr7.1:6407752-6407771 MS.gene025667:CDS 30.0%
TAAGACTAAGGAAAAAGCAA+GGG - chr7.1:6407820-6407839 MS.gene025667:CDS 30.0%
! ATTGACTTTGTTAACAACTC+TGG - chr7.1:6407131-6407150 MS.gene025667:CDS 30.0%
!! CTTTGATGAGTTTTGTGATT+TGG + chr7.1:6406962-6406981 None:intergenic 30.0%
!!! GATAGCTGTTGTTTTGTAAT+AGG + chr7.1:6406819-6406838 None:intergenic 30.0%
!!! TGAAATGATGTTGGTTTTGT+TGG - chr7.1:6407568-6407587 MS.gene025667:CDS 30.0%
AGATACTTAAGATGCATGCT+AGG - chr7.1:6407843-6407862 MS.gene025667:CDS 35.0%
AGCAAATTACTAGGTATGCA+TGG + chr7.1:6407884-6407903 None:intergenic 35.0%
GATACTTAAGATGCATGCTA+GGG - chr7.1:6407844-6407863 MS.gene025667:CDS 35.0%
GTAAGACTAAGGAAAAAGCA+AGG - chr7.1:6407819-6407838 MS.gene025667:CDS 35.0%
TGATTGTGGAAGTAAGACTA+AGG - chr7.1:6407808-6407827 MS.gene025667:CDS 35.0%
TGTACATTAAACGCTTCACA+AGG - chr7.1:6406894-6406913 MS.gene025667:CDS 35.0%
TTAGAAGACTCATTCAAGCT+TGG - chr7.1:6406871-6406890 MS.gene025667:CDS 35.0%
TTCAATACTTTCTCTGTCGT+AGG + chr7.1:6406763-6406782 None:intergenic 35.0%
! TTTTGATGTAGTAACTGCAC+TGG + chr7.1:6407359-6407378 None:intergenic 35.0%
!! AATGCTTAAACTTGGTGTTG+TGG - chr7.1:6407760-6407779 MS.gene025667:CDS 35.0%
!! GTTTTGTTGATTGGTGGTTT+TGG + chr7.1:6406939-6406958 None:intergenic 35.0%
!! TTGGTTCTTCAAGTTGATTG+TGG - chr7.1:6407794-6407813 MS.gene025667:CDS 35.0%
!!! ATTTGGGTTTTGTTGATTGG+TGG + chr7.1:6406945-6406964 None:intergenic 35.0%
!!! GTGATTTGGGTTTTGTTGAT+TGG + chr7.1:6406948-6406967 None:intergenic 35.0%
AAACGTTGCATAGAAGATGC+AGG - chr7.1:6407062-6407081 MS.gene025667:CDS 40.0%
AATCTTTGTCAGTGTGCTGA+AGG - chr7.1:6407593-6407612 MS.gene025667:CDS 40.0%
AGACTTAGATCTATGGCTTC+TGG - chr7.1:6407026-6407045 MS.gene025667:CDS 40.0%
ATACCTGTTGAGACTGTTAC+TGG + chr7.1:6406738-6406757 None:intergenic 40.0%
TGGGGAAGAAACAGAATCAA+AGG - chr7.1:6407476-6407495 MS.gene025667:CDS 40.0%
! AATCTTCATGTGTCTGAAGC+TGG - chr7.1:6407203-6407222 MS.gene025667:CDS 40.0%
! AGTCTTCTAAGAGTGTGGTT+TGG + chr7.1:6406861-6406880 None:intergenic 40.0%
! GAATGAGTCTTCTAAGAGTG+TGG + chr7.1:6406866-6406885 None:intergenic 40.0%
! TTGATTCTGTTTCTTCCCCA+TGG + chr7.1:6407476-6407495 None:intergenic 40.0%
!! AGAATCAAAGGTGTTGAAGC+TGG - chr7.1:6407488-6407507 MS.gene025667:CDS 40.0%
!!! TTGATTGGTGGTTTTGGAGT+TGG + chr7.1:6406933-6406952 None:intergenic 40.0%
ATGGGGCAGACAAAGAATGA+AGG + chr7.1:6406693-6406712 None:intergenic 45.0%
CCATGGACAGAGTGCAATTA+GGG + chr7.1:6407459-6407478 None:intergenic 45.0%
CCTAATTGCACTCTGTCCAT+GGG - chr7.1:6407457-6407476 MS.gene025667:CDS 45.0%
CTAATTGCACTCTGTCCATG+GGG - chr7.1:6407458-6407477 MS.gene025667:CDS 45.0%
GATCCAGTAACAGTCTCAAC+AGG - chr7.1:6406732-6406751 MS.gene025667:CDS 45.0%
TGTTGTGGCTAAGCTTTGCT+TGG - chr7.1:6407775-6407794 MS.gene025667:CDS 45.0%
TTAAGATGCATGCTAGGGCA+TGG - chr7.1:6407849-6407868 MS.gene025667:CDS 45.0%
TTGCGAATGATAGAGCTGTG+AGG - chr7.1:6407687-6407706 MS.gene025667:CDS 45.0%
!! ACGCTTCACAAGGCATTGAA+AGG - chr7.1:6406904-6406923 MS.gene025667:CDS 45.0%
!!! GAACTTTTGAGACATGCAGC+AGG - chr7.1:6407623-6407642 MS.gene025667:CDS 45.0%
CCCATGGACAGAGTGCAATT+AGG + chr7.1:6407460-6407479 None:intergenic 50.0%
CCCTAATTGCACTCTGTCCA+TGG - chr7.1:6407456-6407475 MS.gene025667:CDS 50.0%
AGATGCATGCTAGGGCATGG+AGG - chr7.1:6407852-6407871 MS.gene025667:CDS 55.0%


Chromosome Type Strat End Strand Name
chr7.1 gene 6406666 6407928 6406666 ID=MS.gene025667
chr7.1 mRNA 6406666 6407928 6406666 ID=MS.gene025667.t1;Parent=MS.gene025667
chr7.1 exon 6406666 6407928 6406666 ID=MS.gene025667.t1.exon1;Parent=MS.gene025667.t1
chr7.1 CDS 6406666 6407928 6406666 ID=cds.MS.gene025667.t1;Parent=MS.gene025667.t1
Gene Sequence

>MS.gene025667

ATGGATCATGATGAGATCGAGGTTCCTTCATTCTTTGTCTGCCCCATATCATTAGAAATCATGAAGGATCCAGTAACAGTCTCAACAGGTATAACCTACGACAGAGAAAGTATTGAAAAATGGCTATTTTCAAAGAAAAACATGACATGTCCTATTACAAAACAACAGCTATCAGATTACACTGATCTAACACCAAACCACACTCTTAGAAGACTCATTCAAGCTTGGTGTACATTAAACGCTTCACAAGGCATTGAAAGGATTCCAACTCCAAAACCACCAATCAACAAAACCCAAATCACAAAACTCATCAAAGAAGCGTCTCATTCATCTCTCACTGTGCAGCTTAAATGCTTGAAAAGACTTAGATCTATGGCTTCTGGAAGTGAAACAAACAAACGTTGCATAGAAGATGCAGGTGCTGTTGAGTTTATAGCTTCTATTGTAATAAACAATAGTTGCAACATTGACTTTGTTAACAACTCTGGATCTTTATCAGAGACTAACACTGTTGATGAAGCATTAAGCATACTTCATAATCTTCATGTGTCTGAAGCTGGATTAAAGAAACTACTTGCTTTCAGAAACGGCGAATTTATTGAATCCTTAACAAAAGTTATGCAGAAAGGTTTCTTTGAGTCAAGAGCTTATGCAGTTTTCTTATTAAAATCTATGTCAGAAGTAGCTGAACCAGTGCAGTTACTACATCAAAAAATTGAGATGTTCATTGAATTAGTACAAGTTTTGAAGGATCAAATATCACAGAAAGTATCAAAAGCAGCACTTCAGACCCTAATTGCACTCTGTCCATGGGGAAGAAACAGAATCAAAGGTGTTGAAGCTGGAACAGTTCCTGTTTTAATAGAACTTTTGTTAGAAAATTGCAAAGACAGAAAACCAAATGAAATGATGTTGGTTTTGTTGGAGAATCTTTGTCAGTGTGCTGAAGGAAGAGCTGAACTTTTGAGACATGCAGCAGGTCTTGCTGTTGTTTCTAAGAAGATTCTAAGGGTTTCGACGCTTGCGAATGATAGAGCTGTGAGGATTCTGTTGTCTGTTTCAAGATTCTCTGCAACTCCTAATGTTGTTCAAGAAATGCTTAAACTTGGTGTTGTGGCTAAGCTTTGCTTGGTTCTTCAAGTTGATTGTGGAAGTAAGACTAAGGAAAAAGCAAGGGAGATACTTAAGATGCATGCTAGGGCATGGAGGAATTCTCCATGCATACCTAGTAATTTGCTTTCTTCATACCCCAATTACCAGTGA
Protein sequence

>MS.gene025667.t1

MDHDEIEVPSFFVCPISLEIMKDPVTVSTGITYDRESIEKWLFSKKNMTCPITKQQLSDYTDLTPNHTLRRLIQAWCTLNASQGIERIPTPKPPINKTQITKLIKEASHSSLTVQLKCLKRLRSMASGSETNKRCIEDAGAVEFIASIVINNSCNIDFVNNSGSLSETNTVDEALSILHNLHVSEAGLKKLLAFRNGEFIESLTKVMQKGFFESRAYAVFLLKSMSEVAEPVQLLHQKIEMFIELVQVLKDQISQKVSKAALQTLIALCPWGRNRIKGVEAGTVPVLIELLLENCKDRKPNEMMLVLLENLCQCAEGRAELLRHAAGLAVVSKKILRVSTLANDRAVRILLSVSRFSATPNVVQEMLKLGVVAKLCLVLQVDCGSKTKEKAREILKMHARAWRNSPCIPSNLLSSYPNYQ