AlfalfaGEDB | MS.gene45456

M. sativa cultivar XinJiangDaYe / MS.gene45456

KEGG: -
GO: GO:0003674 GO:0003824 GO:0004842 GO:0006464 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0032446 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0070647 GO:0071704 GO:0140096 GO:1901564
PFAM: PF04564.18

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene45456.t1	RHN79430.1	96.4	441	12	2	1	441	1	437	4.70E-232	813.5

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene45456.t1	Q9SVC6	53.9	445	187	6	1	438	1	434	2.3e-123	443.7

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene45456.t1	A0A396JMB5	96.4	441	12	2	1	441	1	437	3.4e-232	813.5

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene049281	MS.gene45456	0.81352	2.46E-51	-1.69E-46
MS.gene050381	MS.gene45456	0.827845	1.25E-54	-1.69E-46
MS.gene050883	MS.gene45456	0.809986	1.44E-50	-1.69E-46
MS.gene051044	MS.gene45456	0.838291	3.14E-57	-1.69E-46
MS.gene051127	MS.gene45456	0.823873	1.10E-53	-1.69E-46
MS.gene051138	MS.gene45456	0.828469	8.84E-55	-1.69E-46
MS.gene051946	MS.gene45456	0.806971	6.35E-50	-1.69E-46
MS.gene053420	MS.gene45456	0.805837	1.10E-49	-1.69E-46
MS.gene053488	MS.gene45456	0.814937	1.19E-51	-1.69E-46
MS.gene053561	MS.gene45456	0.814678	1.36E-51	-1.69E-46

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PPI:

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Gene1	Gene2	Type
MS.gene066125	MS.gene45456	PPI
MS.gene41035	MS.gene45456	PPI
MS.gene45456	MS.gene061546	PPI
MS.gene45456	MS.gene022190	PPI
MS.gene45456	MS.gene008306	PPI
MS.gene45456	MS.gene41036	PPI
MS.gene45456	MS.gene93972	PPI
MS.gene45456	MS.gene41211	PPI
MS.gene45456	MS.gene04998	PPI
MS.gene45456	MS.gene064492	PPI

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene45456.t1	MTR_1g056880	95.692	441	15	2	1	441	1	437	0.0	858
MS.gene45456.t1	MTR_1g056870	94.104	441	22	2	1	441	1	437	0.0	826
MS.gene45456.t1	MTR_1g056840	89.342	441	17	3	1	441	1	411	0.0	775
MS.gene45456.t1	MTR_7g106340	65.455	440	128	7	1	438	1	418	0.0	556
MS.gene45456.t1	MTR_2g087350	54.483	435	164	5	4	438	3	403	2.27e-152	438
MS.gene45456.t1	MTR_1g056910	40.972	432	215	8	4	430	3	399	3.54e-104	315
MS.gene45456.t1	MTR_4g051515	37.188	441	238	8	4	437	3	411	4.00e-92	285
MS.gene45456.t1	MTR_3g065080	33.113	453	237	12	3	437	32	436	1.94e-59	201
MS.gene45456.t1	MTR_5g077510	33.257	436	242	15	4	429	32	428	1.04e-53	186
MS.gene45456.t1	MTR_5g048050	30.769	429	252	11	2	418	20	415	5.47e-51	178

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene45456.t1	AT3G52450	54.054	444	188	6	1	438	1	434	1.03e-159	458
MS.gene45456.t1	AT2G35930	50.905	442	176	5	1	438	6	410	1.52e-155	447
MS.gene45456.t1	AT3G11840	35.169	472	234	12	3	435	6	444	1.14e-79	254
MS.gene45456.t1	AT3G19380	32.949	434	239	10	1	423	8	400	1.05e-49	174
MS.gene45456.t1	AT5G37490	30.575	435	253	14	4	429	28	422	1.94e-48	171
MS.gene45456.t1	AT1G66160	29.977	427	240	14	4	421	30	406	3.84e-43	157
MS.gene45456.t1	AT1G49780	30.926	443	259	11	1	432	8	414	4.09e-43	157
MS.gene45456.t1	AT1G66160	27.400	427	235	15	4	421	30	390	1.52e-30	122
MS.gene45456.t1	AT5G09800	28.929	439	252	15	10	431	14	409	5.07e-29	118
MS.gene45456.t1	AT1G23030	26.555	418	249	14	11	422	245	610	1.85e-28	118

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Find 48 sgRNAs with CRISPR-Local

Find 71 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAGAATCAGAAGCTTCTTTA+AGG	0.127606	1.2:-44857489	None:intergenic
AATCTTCAATTATCAGAACA+AGG	0.603602	1.2:+44857772	MS.gene45456:CDS
AATTCATGGTGCACCATGCT+TGG	0.475436	1.2:-44857399	None:intergenic
ACAAGGCAAAGGAGAAAGCA+AGG	0.529082	1.2:+44858385	MS.gene45456:CDS
AGAGTAAAAGCAATTGAATC+AGG	0.420580	1.2:+44858057	MS.gene45456:CDS
AGATTTGAACTCTTAAGCCA+TGG	0.566041	1.2:+44858183	MS.gene45456:CDS
AGCACCAAAATCATCTCACA+TGG	0.654659	1.2:-44858129	None:intergenic
AGGGTTTGGATAAGTAAATG+AGG	0.542957	1.2:-44857520	None:intergenic
AGTCTACGAAGAGTGTGGTT+TGG	0.516469	1.2:-44857373	None:intergenic
ATGCCTGTTGAGACAGTAAC+TGG	0.387709	1.2:-44857235	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAAAAACTCGGTCTTTAGAT+TGG	-	chr1.2:44857941-44857960	None:intergenic	30.0%
AACTAACTCGACAAAAAACT+CGG	-	chr1.2:44857953-44857972	None:intergenic	30.0%
AAGAATCAGAAGCTTCTTTA+AGG	-	chr1.2:44857492-44857511	None:intergenic	30.0%
ACTCTCCTAAACTTCAAAAA+TGG	+	chr1.2:44857802-44857821	MS.gene45456:CDS	30.0%
AGAGTAAAAGCAATTGAATC+AGG	+	chr1.2:44858057-44858076	MS.gene45456:CDS	30.0%
ATTCTTCTTATGGAATCGAA+AGG	+	chr1.2:44857419-44857438	MS.gene45456:CDS	30.0%
GAAATAGGGCAAAGAAAAAA+TGG	-	chr1.2:44857196-44857215	None:intergenic	30.0%
GATTCCATAAGAAGAATTCA+TGG	-	chr1.2:44857416-44857435	None:intergenic	30.0%
GTTCAAGAAATGTTACGAAT+TGG	+	chr1.2:44858318-44858337	MS.gene45456:CDS	30.0%
TATTTCACTACAACTCATGA+AGG	+	chr1.2:44857210-44857229	MS.gene45456:CDS	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr1.2	gene	44857169	44858494	44857169	ID=MS.gene45456
chr1.2	mRNA	44857169	44858494	44857169	ID=MS.gene45456.t1;Parent=MS.gene45456
chr1.2	exon	44857169	44858494	44857169	ID=MS.gene45456.t1.exon1;Parent=MS.gene45456.t1
chr1.2	CDS	44857169	44858494	44857169	ID=cds.MS.gene45456.t1;Parent=MS.gene45456.t1

Gene Sequence

>MS.gene45456

ATGAATCAAGATATCGAAGTTACACCATTTTTTCTTTGCCCTATTTCACTACAACTCATGAAGGATCCAGTTACTGTCTCAACAGGCATAACCTACGACAGAGAAAGCATCGAAAAATGGCTCTTTTCATCGGAAAACAAAACATGTCCTGTCACAAAACAACAACTCACACATGATGATGCAAATGATCTCATTATTCTCACTCCAAACCACACTCTTCGTAGACTCATCCAAGCATGGTGCACCATGAATTCTTCTTATGGAATCGAAAGGATTCCAACTCCAAAACCTCCAACCACAAAAACCCTCATCGAAAAACTCCTTAAAGAAGCTTCTGATTCTTCATATTCACCTCATTTACTTATCCAAACCCTAAAAAAGCTCAAAACAATTGCATCCGAGAGTGAGTCAAATCGACGGTGTATTGAATCCGCCGGTGCAGTCGAGTTCTTAGCATCAATAGTTACAAAAAACAACACAAGTTGTTCATCTTCATGTTCAACAACGGAATTAATTGAAGCTAGCTTTGATGATGATGATGTTGAAGGTTTTGCTTTTGACTTCAAAATAGGTGCAGAAGATGAAGCTATAAACATCCTTTACAATCTTCAATTATCAGAACAAGGTTTGAAAACTCTCCTAAACTTCAAAAATGGAGAATTTTTAGACTCTTTAATGAAATTATTGCAAAAGGGTAACTACGATTCAAGAACATACTCAGTTTTTCTGTTGAAATCAATGTCAAAAGTAGCTGATCCAACAAAGCTAGCCAATCTAAAGACCGAGTTTTTTGTCGAGTTAGTTCAACTTCTCAAAGACCAGATATCAAAGAAAGCATCAAAAGCAACACTACAAACGTTAATTCAACTCGTCGAATTTGGAAGAAATAGAGTAAAAGCAATTGAATCAGGTTGTGTTTCTGCTTTGATAGAACTTCTTCTTGATTGCAAAGAAAGGAAGCCATGTGAGATGATTTTGGTGCTTTTGGAGATGTTATGTCAATGTGCTGATGGAAGATTTGAACTCTTAAGCCATGGATGTGGTTTAGCTATTGTTTCAAAGAAGATTTTGAGGGTTTCAACAATGGCTAATGATAGAGCTGTGAGGATTCTTCTTTCAGTTTCAAGATTTTCTGCTACACATTTTGTTGTTCAAGAAATGTTACGAATTGGTATTGTTGCTAAGCTTTGTTTGGTTCTTCAAGTTGATAGTGGAAACAAGGCAAAGGAGAAAGCAAGGGAGATTCTTAAATTGCATTCAAAGTCTTGGATGAATTCTCATTGCATACCTTTTAATTTACTTGCTTCATACCCAACAAGTGGATAA

Protein sequence

>MS.gene45456.t1

MNQDIEVTPFFLCPISLQLMKDPVTVSTGITYDRESIEKWLFSSENKTCPVTKQQLTHDDANDLIILTPNHTLRRLIQAWCTMNSSYGIERIPTPKPPTTKTLIEKLLKEASDSSYSPHLLIQTLKKLKTIASESESNRRCIESAGAVEFLASIVTKNNTSCSSSCSTTELIEASFDDDDVEGFAFDFKIGAEDEAINILYNLQLSEQGLKTLLNFKNGEFLDSLMKLLQKGNYDSRTYSVFLLKSMSKVADPTKLANLKTEFFVELVQLLKDQISKKASKATLQTLIQLVEFGRNRVKAIESGCVSALIELLLDCKERKPCEMILVLLEMLCQCADGRFELLSHGCGLAIVSKKILRVSTMANDRAVRILLSVSRFSATHFVVQEMLRIGIVAKLCLVLQVDSGNKAKEKAREILKLHSKSWMNSHCIPFNLLASYPTSG