AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene034751

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene034751.t1 MTR_1g056880 95.011 441 18 2 1 441 1 437 0.0 840
MS.gene034751.t1 MTR_1g056870 93.197 441 26 2 1 441 1 437 0.0 823
MS.gene034751.t1 MTR_1g056840 88.662 441 20 3 1 441 1 411 0.0 773
MS.gene034751.t1 MTR_7g106340 65.227 440 129 7 1 438 1 418 0.0 554
MS.gene034751.t1 MTR_2g087350 54.253 435 165 4 4 438 3 403 5.04e-152 437
MS.gene034751.t1 MTR_1g056910 40.046 432 219 8 4 430 3 399 9.28e-103 311
MS.gene034751.t1 MTR_4g051515 36.961 441 239 8 4 437 3 411 2.96e-92 285
MS.gene034751.t1 MTR_3g065080 32.671 453 239 12 3 437 32 436 3.36e-59 200
MS.gene034751.t1 MTR_5g077510 32.798 436 244 15 4 429 32 428 9.38e-54 186
MS.gene034751.t1 MTR_5g048050 32.102 433 241 13 2 418 20 415 3.80e-52 181
MS.gene034751.t1 MTR_6g071340 31.442 423 239 12 11 418 9 395 3.21e-51 178
MS.gene034751.t1 MTR_4g085720 30.841 428 249 11 1 423 8 393 1.99e-44 160
MS.gene034751.t1 MTR_8g092870 27.828 442 273 12 5 431 8 418 2.41e-33 130
MS.gene034751.t1 MTR_3g095730 27.991 443 269 12 5 431 11 419 2.38e-30 122
MS.gene034751.t1 MTR_4g063800 25.175 429 263 13 11 430 259 638 2.35e-26 112
MS.gene034751.t1 MTR_5g015210 26.366 421 262 9 6 426 66 438 4.09e-25 107
MS.gene034751.t1 MTR_7g059405 26.471 408 256 13 11 418 268 631 6.27e-25 108
MS.gene034751.t1 MTR_4g485520 27.586 319 169 9 11 315 109 379 7.19e-25 107
MS.gene034751.t1 MTR_4g485520 27.586 319 169 9 11 315 277 547 1.10e-24 107
MS.gene034751.t1 MTR_3g096370 26.107 429 270 15 4 423 7 397 3.30e-24 104
MS.gene034751.t1 MTR_7g078330 31.095 283 158 10 11 274 278 542 6.02e-24 105
MS.gene034751.t1 MTR_2g018010 29.721 323 160 12 11 313 296 571 8.53e-23 101
MS.gene034751.t1 MTR_5g083030 25.141 354 200 10 11 342 297 607 1.14e-20 95.1
MS.gene034751.t1 MTR_4g107010 27.316 421 251 18 11 418 284 662 1.88e-20 94.7
MS.gene034751.t1 MTR_3g085610 25.214 468 285 18 13 441 286 727 2.73e-19 91.3
MS.gene034751.t1 MTR_1g094215 27.566 341 186 12 11 339 68 359 1.77e-18 87.8
MS.gene034751.t1 MTR_1g094215 27.566 341 186 12 11 339 251 542 4.68e-18 87.0
MS.gene034751.t1 MTR_8g080280 27.716 451 250 22 13 418 288 707 5.83e-18 87.0
MS.gene034751.t1 MTR_3g078160 25.587 426 250 16 11 418 279 655 1.52e-17 85.5
MS.gene034751.t1 MTR_3g078160 25.587 426 250 16 11 418 279 655 1.63e-17 85.5
MS.gene034751.t1 MTR_4g091880 26.341 410 247 13 11 418 9 365 2.16e-17 84.0
MS.gene034751.t1 MTR_5g034440 26.558 369 236 13 11 375 284 621 3.19e-17 84.7
MS.gene034751.t1 MTR_4g028960 34.503 171 78 7 2 151 273 430 9.69e-17 83.2
MS.gene034751.t1 MTR_7g097020 44.444 81 38 2 5 85 239 312 2.81e-16 81.6
MS.gene034751.t1 MTR_7g053260 42.500 80 39 2 1 80 72 144 1.04e-15 79.3
MS.gene034751.t1 MTR_1g069845 46.575 73 32 2 9 81 126 191 1.06e-15 79.7
MS.gene034751.t1 MTR_1g069845 44.156 77 36 2 5 81 243 312 1.87e-15 79.3
MS.gene034751.t1 MTR_1g069845 44.156 77 36 2 5 81 239 308 1.98e-15 79.0
MS.gene034751.t1 MTR_7g116600 44.681 94 41 4 11 104 82 164 2.25e-15 78.2
MS.gene034751.t1 MTR_1g017770 50.649 77 30 3 5 80 42 111 5.71e-15 77.0
MS.gene034751.t1 MTR_2g011140 26.730 318 189 9 13 330 21 294 8.34e-15 76.3
MS.gene034751.t1 MTR_4g091880 25.301 415 217 15 11 418 9 337 1.01e-14 75.5
MS.gene034751.t1 MTR_3g115670 25.581 215 118 7 11 207 34 224 1.53e-14 76.3
MS.gene034751.t1 MTR_8g077205 43.011 93 40 4 5 95 159 240 2.46e-14 75.5
MS.gene034751.t1 MTR_8g077205 43.011 93 40 4 5 95 271 352 3.54e-14 75.1
MS.gene034751.t1 MTR_3g078160 45.055 91 42 3 11 100 279 362 7.62e-14 73.9
MS.gene034751.t1 MTR_5g020570 42.857 98 41 6 1 95 265 350 2.23e-13 72.8
MS.gene034751.t1 MTR_8g103227 40.449 89 39 3 11 99 399 473 2.63e-13 72.8
MS.gene034751.t1 MTR_5g020570 42.857 98 41 6 1 95 280 365 2.76e-13 72.4
MS.gene034751.t1 MTR_1g090320 42.500 80 40 2 11 90 517 590 7.74e-13 71.2
MS.gene034751.t1 MTR_1g090320 42.500 80 40 2 11 90 519 592 7.88e-13 71.2
MS.gene034751.t1 MTR_1g079450 39.560 91 44 4 5 95 61 140 1.12e-12 70.1
MS.gene034751.t1 MTR_3g466220 40.476 84 43 2 2 85 228 304 1.41e-12 70.1
MS.gene034751.t1 MTR_3g466220 40.476 84 43 2 2 85 207 283 1.44e-12 70.1
MS.gene034751.t1 MTR_7g117890 41.667 84 42 2 2 85 250 326 3.50e-12 68.9
MS.gene034751.t1 MTR_2g096850 38.750 80 42 2 1 80 583 655 3.06e-11 65.9
MS.gene034751.t1 MTR_2g096850 38.750 80 42 2 1 80 734 806 3.57e-11 65.9
MS.gene034751.t1 MTR_1g093995 46.479 71 28 3 20 90 1 61 6.26e-11 62.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene034751.t1 AT3G52450 54.505 444 186 6 1 438 1 434 8.72e-160 458
MS.gene034751.t1 AT2G35930 51.357 442 174 5 1 438 6 410 9.10e-157 450
MS.gene034751.t1 AT3G11840 35.181 469 238 9 3 435 6 444 5.14e-79 252
MS.gene034751.t1 AT3G19380 33.179 431 242 9 1 423 8 400 7.70e-50 175
MS.gene034751.t1 AT5G37490 29.587 436 256 14 4 429 28 422 2.84e-47 168
MS.gene034751.t1 AT1G49780 31.377 443 257 11 1 432 8 414 4.67e-44 159
MS.gene034751.t1 AT1G66160 28.605 430 248 14 2 421 26 406 3.59e-42 154
MS.gene034751.t1 AT1G66160 26.056 426 242 14 4 421 30 390 1.40e-29 119
MS.gene034751.t1 AT5G09800 28.702 439 253 16 10 431 14 409 4.42e-29 118
MS.gene034751.t1 AT2G28830 27.896 423 264 18 2 421 178 562 1.41e-27 115
MS.gene034751.t1 AT1G23030 26.077 418 251 14 11 422 245 610 1.95e-27 115
MS.gene034751.t1 AT3G18710 26.862 443 271 11 5 431 10 415 8.15e-27 112
MS.gene034751.t1 AT5G64660 26.398 447 275 14 5 431 8 420 7.67e-25 106
MS.gene034751.t1 AT5G42340 29.392 296 166 8 11 306 294 546 4.74e-24 105
MS.gene034751.t1 AT1G71020 26.526 426 248 14 11 422 99 473 8.06e-24 103
MS.gene034751.t1 AT3G46510 25.806 434 254 15 2 421 250 629 9.58e-24 104
MS.gene034751.t1 AT3G54850 29.032 310 185 12 7 316 248 522 1.01e-23 104
MS.gene034751.t1 AT1G71020 26.526 426 248 14 11 422 247 621 1.18e-23 104
MS.gene034751.t1 AT3G49810 24.228 421 271 9 6 426 63 435 8.66e-22 97.8
MS.gene034751.t1 AT5G65920 24.113 423 269 10 6 426 59 431 2.70e-21 96.3
MS.gene034751.t1 AT5G65920 24.113 423 269 10 6 426 59 431 2.70e-21 96.3
MS.gene034751.t1 AT1G67530 26.549 452 261 14 13 418 278 704 4.10e-20 93.6
MS.gene034751.t1 AT1G67530 26.549 452 261 14 13 418 278 704 4.10e-20 93.6
MS.gene034751.t1 AT1G67530 26.549 452 261 14 13 418 278 704 4.10e-20 93.6
MS.gene034751.t1 AT1G29340 26.006 323 183 10 5 313 303 583 3.42e-18 87.8
MS.gene034751.t1 AT1G24330 24.832 447 271 18 13 418 281 703 3.44e-17 84.7
MS.gene034751.t1 AT1G24330 24.832 447 271 18 13 418 281 703 3.44e-17 84.7
MS.gene034751.t1 AT1G67530 47.253 91 36 4 13 103 278 356 3.51e-17 84.3
MS.gene034751.t1 AT5G01830 24.601 313 184 9 4 308 271 539 3.72e-17 84.3
MS.gene034751.t1 AT1G10560 24.204 314 187 7 11 313 292 565 5.36e-17 84.0
MS.gene034751.t1 AT1G27910 42.857 105 49 4 13 117 285 378 6.77e-17 84.0
MS.gene034751.t1 AT4G21350 25.000 404 249 12 11 412 9 360 1.54e-16 81.3
MS.gene034751.t1 AT3G54790 42.500 80 39 2 5 84 200 272 3.16e-14 75.5
MS.gene034751.t1 AT3G54790 42.500 80 39 2 5 84 236 308 3.81e-14 75.1
MS.gene034751.t1 AT3G54790 42.500 80 39 2 5 84 236 308 3.81e-14 75.1
MS.gene034751.t1 AT3G07360 46.667 75 33 2 11 85 78 145 3.89e-14 74.7
MS.gene034751.t1 AT3G02840 23.782 349 221 10 83 417 34 351 1.56e-13 72.4
MS.gene034751.t1 AT1G60190 25.070 359 206 14 13 354 284 596 1.79e-13 73.2
MS.gene034751.t1 AT2G23140 40.000 90 43 3 11 100 237 315 1.82e-13 73.2
MS.gene034751.t1 AT2G23140 40.000 90 43 3 11 100 234 312 1.88e-13 73.2
MS.gene034751.t1 AT2G23140 40.000 90 43 3 11 100 234 312 1.88e-13 73.2
MS.gene034751.t1 AT2G23140 40.000 90 43 3 11 100 45 123 2.17e-13 72.8
MS.gene034751.t1 AT2G23140 40.000 90 43 3 11 100 45 123 2.17e-13 72.8
MS.gene034751.t1 AT1G01660 39.474 76 39 2 10 85 501 569 8.21e-13 70.9
MS.gene034751.t1 AT1G01660 39.474 76 39 2 10 85 500 568 8.35e-13 70.9
MS.gene034751.t1 AT2G45920 40.244 82 42 2 6 87 324 398 4.81e-12 67.8
MS.gene034751.t1 AT1G01680 41.558 77 38 2 11 87 237 306 7.92e-12 66.6
MS.gene034751.t1 AT5G18340 37.273 110 56 5 5 114 72 168 2.70e-11 65.9
MS.gene034751.t1 AT1G68940 28.188 149 81 3 11 156 303 428 5.15e-11 65.5
MS.gene034751.t1 AT1G68940 28.188 149 81 3 11 156 303 428 5.62e-11 65.5
MS.gene034751.t1 AT1G68940 28.188 149 81 3 11 156 250 375 5.94e-11 65.5

Find 51 sgRNAs with CRISPR-Local

Find 70 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTGATGCTTTCTTTGATATT+TGG 0.178417 1.1:-44110939 None:intergenic
TTAATTCAACTTGTCGAATT+TGG 0.215058 1.1:+44110979 MS.gene034751:CDS
TTGTTTCAAAGAAGATTCTT+AGG 0.216095 1.1:+44111172 MS.gene034751:CDS
TTCATGATTTGTAGTGAAAT+AGG 0.220834 1.1:-44110160 None:intergenic
TCAAGTTGATAGTGGAAATA+AGG 0.246468 1.1:+44111320 MS.gene034751:CDS
TATGAAGCAAGTAAATTAAA+AGG 0.308972 1.1:-44111408 None:intergenic
TGCACCATGAATTCTTCTTA+TGG 0.309841 1.1:+44110361 MS.gene034751:CDS
TTTAGATTGGCTAGCTTTGA+TGG 0.325195 1.1:-44110877 None:intergenic
AAAGCCATGTGAGATGATTT+TGG 0.361012 1.1:+44111077 MS.gene034751:CDS
TCATGATTTGTAGTGAAATA+GGG 0.364276 1.1:-44110159 None:intergenic
ATGGTGTAACTTCGATATCT+TGG 0.376226 1.1:-44110126 None:intergenic
ATTCAAGAAATGTTACGAAT+TGG 0.378143 1.1:+44111270 MS.gene034751:CDS
AACTCCATAAGAAGAATTCA+TGG 0.378719 1.1:-44110365 None:intergenic
TTAAATTGCATTCAAAGTCT+TGG 0.383883 1.1:+44111367 MS.gene034751:CDS
ATGCCTGTTGAGACAGTAAC+TGG 0.387709 1.1:-44110187 None:intergenic
TTTAATGAGATTATTGCAAA+AGG 0.403896 1.1:+44110792 MS.gene034751:CDS
AGAGTAAAAGCAATTGAATC+AGG 0.420580 1.1:+44111009 MS.gene034751:CDS
TGTTGTTGCAAAGCTTTGTT+TGG 0.427050 1.1:+44111293 MS.gene034751:CDS
TTTGATGATGATGATGTTGA+AGG 0.466030 1.1:+44110646 MS.gene034751:CDS
GATCCAGTTACTGTCTCAAC+AGG 0.466859 1.1:+44110184 MS.gene034751:CDS
TGTTTCAAAGAAGATTCTTA+GGG 0.470575 1.1:+44111173 MS.gene034751:CDS
AATTCATGGTGCACCATGCT+TGG 0.475436 1.1:-44110351 None:intergenic
AGCCTACGAAGAGTGTGGTT+TGG 0.488339 1.1:-44110325 None:intergenic
TTAATGAGATTATTGCAAAA+GGG 0.503906 1.1:+44110793 MS.gene034751:CDS
TTGGTTCTTCAAGTTGATAG+TGG 0.510674 1.1:+44111312 MS.gene034751:CDS
CCGACGATTTGTTTCGCTCT+CGG 0.515538 1.1:-44110518 None:intergenic
AGATTTGAACTTCTAAGCCA+TGG 0.528702 1.1:+44111135 MS.gene034751:CDS
ATGTTATGTCAATGTGCTGA+TGG 0.528834 1.1:+44111111 MS.gene034751:CDS
ATTCTTCTTATGGAGTTGAA+AGG 0.542323 1.1:+44110371 MS.gene034751:CDS
AGGGTTTGGATAAGTAAATG+AGG 0.542957 1.1:-44110472 None:intergenic
GATTCTTAGGGTTTCAACAA+TGG 0.555489 1.1:+44111185 MS.gene034751:CDS
GAACTTCTAAGCCATGGATG+TGG 0.556866 1.1:+44111141 MS.gene034751:CDS
ATAAGGCAAAGGAGAAAGCA+AGG 0.557452 1.1:+44111337 MS.gene034751:CDS
TTCGATGCTTTCTCTGTCGT+AGG 0.572900 1.1:-44110212 None:intergenic
CTGATAATTGAAGACTGTAA+AGG 0.581818 1.1:-44110717 None:intergenic
CTTGCTTCATACCCAACAAG+TGG 0.584581 1.1:+44111420 MS.gene034751:CDS
TGATAGTGGAAATAAGGCAA+AGG 0.584798 1.1:+44111326 MS.gene034751:CDS
TGCTAAGAACTCGACTGCAC+CGG 0.586369 1.1:-44110554 None:intergenic
TATTTCACTACAAATCATGA+AGG 0.592910 1.1:+44110162 MS.gene034751:CDS
AGTCTTCAATTATCAGAACA+AGG 0.612660 1.1:+44110724 MS.gene034751:CDS
TTCGTAGGCTCATCCAAGCA+TGG 0.613158 1.1:+44110338 MS.gene034751:CDS
CAATAGCTAAACCACATCCA+TGG 0.618916 1.1:-44111152 None:intergenic
CGTCGGTGTATCGAATCAGC+CGG 0.622512 1.1:+44110535 MS.gene034751:CDS
TTTGTAGTGAAATAGGGCAA+AGG 0.623621 1.1:-44110153 None:intergenic
TAAGGCAAAGGAGAAAGCAA+GGG 0.629025 1.1:+44111338 MS.gene034751:CDS
CTCCAAACCACACTCTTCGT+AGG 0.637158 1.1:+44110323 MS.gene034751:CDS
GGATGAGCCTACGAAGAGTG+TGG 0.646535 1.1:-44110330 None:intergenic
TTGCTTCATACCCAACAAGT+GGG 0.653316 1.1:+44111421 MS.gene034751:CDS
AGCACCAAAATCATCTCACA+TGG 0.654659 1.1:-44111081 None:intergenic
CCGAGAGCGAAACAAATCGT+CGG 0.679598 1.1:+44110518 MS.gene034751:CDS
TGGCTAATGATAGAGCTGTG+AGG 0.767301 1.1:+44111205 MS.gene034751:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TATGAAGCAAGTAAATTAAA+AGG - chr1.1:44111411-44111430 None:intergenic 20.0%
!! TTAATGAGATTATTGCAAAA+GGG + chr1.1:44110793-44110812 MS.gene034751:CDS 20.0%
!! TTTAATGAGATTATTGCAAA+AGG + chr1.1:44110792-44110811 MS.gene034751:CDS 20.0%
! ATTCAAGAAATGTTACGAAT+TGG + chr1.1:44111270-44111289 MS.gene034751:CDS 25.0%
! TATTTCACTACAAATCATGA+AGG + chr1.1:44110162-44110181 MS.gene034751:CDS 25.0%
! TGTTTCAAAGAAGATTCTTA+GGG + chr1.1:44111173-44111192 MS.gene034751:CDS 25.0%
! TTAAATTGCATTCAAAGTCT+TGG + chr1.1:44111367-44111386 MS.gene034751:CDS 25.0%
! TTAATTCAACTTGTCGAATT+TGG + chr1.1:44110979-44110998 MS.gene034751:CDS 25.0%
! TTGATGCTTTCTTTGATATT+TGG - chr1.1:44110942-44110961 None:intergenic 25.0%
! TTGTTTCAAAGAAGATTCTT+AGG + chr1.1:44111172-44111191 MS.gene034751:CDS 25.0%
!! TCATGATTTGTAGTGAAATA+GGG - chr1.1:44110162-44110181 None:intergenic 25.0%
!! TTCATGATTTGTAGTGAAAT+AGG - chr1.1:44110163-44110182 None:intergenic 25.0%
!!! ATTCTCCATTTTTGAAGTTT+AGG - chr1.1:44110762-44110781 None:intergenic 25.0%
!!! GATTGTTTTGAGCTTTTTTA+GGG - chr1.1:44110494-44110513 None:intergenic 25.0%
!!! TTTGAAGAGTTTTTCAATGA+GGG - chr1.1:44110428-44110447 None:intergenic 25.0%
!!! TTTGCTTTTGACTTCAAAAT+AGG + chr1.1:44110670-44110689 MS.gene034751:CDS 25.0%
AACTAACTCGATGAAAAACT+CGG - chr1.1:44110905-44110924 None:intergenic 30.0%
AACTCCATAAGAAGAATTCA+TGG - chr1.1:44110368-44110387 None:intergenic 30.0%
AGAGTAAAAGCAATTGAATC+AGG + chr1.1:44111009-44111028 MS.gene034751:CDS 30.0%
AGTCTTCAATTATCAGAACA+AGG + chr1.1:44110724-44110743 MS.gene034751:CDS 30.0%
ATTCTTCTTATGGAGTTGAA+AGG + chr1.1:44110371-44110390 MS.gene034751:CDS 30.0%
CTGATAATTGAAGACTGTAA+AGG - chr1.1:44110720-44110739 None:intergenic 30.0%
!! CTTTGAAGAGTTTTTCAATG+AGG - chr1.1:44110429-44110448 None:intergenic 30.0%
!! TCAAGTTGATAGTGGAAATA+AGG + chr1.1:44111320-44111339 MS.gene034751:CDS 30.0%
!! TTTGATGATGATGATGTTGA+AGG + chr1.1:44110646-44110665 MS.gene034751:CDS 30.0%
!!! CGATTGTTTTGAGCTTTTTT+AGG - chr1.1:44110495-44110514 None:intergenic 30.0%
!!! TTTTGAGCTTTTTTAGGGTT+TGG - chr1.1:44110489-44110508 None:intergenic 30.0%
AGATTTGAACTTCTAAGCCA+TGG + chr1.1:44111135-44111154 MS.gene034751:CDS 35.0%
AGGGTTTGGATAAGTAAATG+AGG - chr1.1:44110475-44110494 None:intergenic 35.0%
ATGGTGTAACTTCGATATCT+TGG - chr1.1:44110129-44110148 None:intergenic 35.0%
ATGTTATGTCAATGTGCTGA+TGG + chr1.1:44111111-44111130 MS.gene034751:CDS 35.0%
GAAAAACTCGGTCTTTAGAT+TGG - chr1.1:44110893-44110912 None:intergenic 35.0%
GAAATAGGGCAAAGGAAAAA+TGG - chr1.1:44110148-44110167 None:intergenic 35.0%
GATTCTTAGGGTTTCAACAA+TGG + chr1.1:44111185-44111204 MS.gene034751:CDS 35.0%
GCTCTCCTAAACTTCAAAAA+TGG + chr1.1:44110754-44110773 MS.gene034751:CDS 35.0%
TGCACCATGAATTCTTCTTA+TGG + chr1.1:44110361-44110380 MS.gene034751:CDS 35.0%
TTTGTAGTGAAATAGGGCAA+AGG - chr1.1:44110156-44110175 None:intergenic 35.0%
! AAAGCCATGTGAGATGATTT+TGG + chr1.1:44111077-44111096 MS.gene034751:CDS 35.0%
! CGAAAAATGGCTCTTTTCAT+CGG + chr1.1:44110231-44110250 MS.gene034751:CDS 35.0%
!! ACAGAGAAAGCATCGAAAAA+TGG + chr1.1:44110218-44110237 MS.gene034751:CDS 35.0%
!! TCAATGAGGGTTTTTGTTGT+TGG - chr1.1:44110415-44110434 None:intergenic 35.0%
!! TGATAGTGGAAATAAGGCAA+AGG + chr1.1:44111326-44111345 MS.gene034751:CDS 35.0%
!! TGTTGTTGCAAAGCTTTGTT+TGG + chr1.1:44111293-44111312 MS.gene034751:CDS 35.0%
!! TTGGTTCTTCAAGTTGATAG+TGG + chr1.1:44111312-44111331 MS.gene034751:CDS 35.0%
!! TTTAGATTGGCTAGCTTTGA+TGG - chr1.1:44110880-44110899 None:intergenic 35.0%
!!! GTTTTTGTTGTTGGAGGTTT+TGG - chr1.1:44110406-44110425 None:intergenic 35.0%
!!! TGAGATGATTTTGGTGCTTT+TGG + chr1.1:44111086-44111105 MS.gene034751:CDS 35.0%
AGCACCAAAATCATCTCACA+TGG - chr1.1:44111084-44111103 None:intergenic 40.0%
ATAAGGCAAAGGAGAAAGCA+AGG + chr1.1:44111337-44111356 MS.gene034751:CDS 40.0%
CAATAGCTAAACCACATCCA+TGG - chr1.1:44111155-44111174 None:intergenic 40.0%
TAAGGCAAAGGAGAAAGCAA+GGG + chr1.1:44111338-44111357 MS.gene034751:CDS 40.0%
TTGCTTCATACCCAACAAGT+GGG + chr1.1:44111421-44111440 MS.gene034751:CDS 40.0%
!!! ATGAGGGTTTTTGTTGTTGG+AGG - chr1.1:44110412-44110431 None:intergenic 40.0%
!!! GTGAGTTGTTGTTTTGTGAC+AGG - chr1.1:44110271-44110290 None:intergenic 40.0%
AATTCATGGTGCACCATGCT+TGG - chr1.1:44110354-44110373 None:intergenic 45.0%
ATGCCTGTTGAGACAGTAAC+TGG - chr1.1:44110190-44110209 None:intergenic 45.0%
CTTGCTTCATACCCAACAAG+TGG + chr1.1:44111420-44111439 MS.gene034751:CDS 45.0%
GAACTTCTAAGCCATGGATG+TGG + chr1.1:44111141-44111160 MS.gene034751:CDS 45.0%
GATCCAGTTACTGTCTCAAC+AGG + chr1.1:44110184-44110203 MS.gene034751:CDS 45.0%
TGGCTAATGATAGAGCTGTG+AGG + chr1.1:44111205-44111224 MS.gene034751:CDS 45.0%
TTCGATGCTTTCTCTGTCGT+AGG - chr1.1:44110215-44110234 None:intergenic 45.0%
!!! GTTGTTGGAGGTTTTGGAGT+TGG - chr1.1:44110400-44110419 None:intergenic 45.0%
CCGAGAGCGAAACAAATCGT+CGG + chr1.1:44110518-44110537 MS.gene034751:CDS 50.0%
CTCCAAACCACACTCTTCGT+AGG + chr1.1:44110323-44110342 MS.gene034751:CDS 50.0%
TGCTAAGAACTCGACTGCAC+CGG - chr1.1:44110557-44110576 None:intergenic 50.0%
TTCGTAGGCTCATCCAAGCA+TGG + chr1.1:44110338-44110357 MS.gene034751:CDS 50.0%
! AGCCTACGAAGAGTGTGGTT+TGG - chr1.1:44110328-44110347 None:intergenic 50.0%
! CCGACGATTTGTTTCGCTCT+CGG - chr1.1:44110521-44110540 None:intergenic 50.0%
CGTCGGTGTATCGAATCAGC+CGG + chr1.1:44110535-44110554 MS.gene034751:CDS 55.0%
GGATGAGCCTACGAAGAGTG+TGG - chr1.1:44110333-44110352 None:intergenic 55.0%


Chromosome Type Strat End Strand Name
chr1.1 gene 44110121 44111446 44110121 ID=MS.gene034751
chr1.1 mRNA 44110121 44111446 44110121 ID=MS.gene034751.t1;Parent=MS.gene034751
chr1.1 exon 44110121 44111446 44110121 ID=MS.gene034751.t1.exon1;Parent=MS.gene034751.t1
chr1.1 CDS 44110121 44111446 44110121 ID=cds.MS.gene034751.t1;Parent=MS.gene034751.t1
Gene Sequence

>MS.gene034751

ATGAACCAAGATATCGAAGTTACACCATTTTTCCTTTGCCCTATTTCACTACAAATCATGAAGGATCCAGTTACTGTCTCAACAGGCATAACCTACGACAGAGAAAGCATCGAAAAATGGCTCTTTTCATCGGAAAACAAAACATGTCCTGTCACAAAACAACAACTCACACATGATGATGCAAATGATCTCATTATTCTCACTCCAAACCACACTCTTCGTAGGCTCATCCAAGCATGGTGCACCATGAATTCTTCTTATGGAGTTGAAAGGATTCCAACTCCAAAACCTCCAACAACAAAAACCCTCATTGAAAAACTCTTCAAAGAAGCTTCTGATTCTTCAGATTCACCTCATTTACTTATCCAAACCCTAAAAAAGCTCAAAACAATCGCTTCCGAGAGCGAAACAAATCGTCGGTGTATCGAATCAGCCGGTGCAGTCGAGTTCTTAGCATCAATAGTAACAAAAAACAACACAAGTTGTTCATCTTCTTGTTCAGCAACAGAATTAATTGAAGCTAGCTTTGATGATGATGATGTTGAAGGTTTTGCTTTTGACTTCAAAATAGGTGCAGAAGATGAAGCAATAAACATCCTTTACAGTCTTCAATTATCAGAACAAGGTTTGAAAGCTCTCCTAAACTTCAAAAATGGAGAATTTATAGACTCTTTAATGAGATTATTGCAAAAGGGTAACTACGATTCAAGAACATACGCAATCTTTCTGTTGAAATCTATGTCAAAAGTAGCTGATCCATCAAAGCTAGCCAATCTAAAGACCGAGTTTTTCATCGAGTTAGTTCAACTTCTCAAAGACCAAATATCAAAGAAAGCATCAAAAGCAACACTACAAACGTTAATTCAACTTGTCGAATTTGGTAGAAATAGAGTAAAAGCAATTGAATCAGGTTGTGTTTCTGCTTTGATAGAACTTCTTCTTGATTGCAAAGAAAGAAAGCCATGTGAGATGATTTTGGTGCTTTTGGAGATGTTATGTCAATGTGCTGATGGAAGATTTGAACTTCTAAGCCATGGATGTGGTTTAGCTATTGTTTCAAAGAAGATTCTTAGGGTTTCAACAATGGCTAATGATAGAGCTGTGAGGATTCTTCTATCTGTTTCAAGATTTTCTGCAACACATTTTGTTATTCAAGAAATGTTACGAATTGGTGTTGTTGCAAAGCTTTGTTTGGTTCTTCAAGTTGATAGTGGAAATAAGGCAAAGGAGAAAGCAAGGGAGATTCTTAAATTGCATTCAAAGTCTTGGATGAATTCTCATTGCATACCTTTTAATTTACTTGCTTCATACCCAACAAGTGGGTAA
Protein sequence

>MS.gene034751.t1

MNQDIEVTPFFLCPISLQIMKDPVTVSTGITYDRESIEKWLFSSENKTCPVTKQQLTHDDANDLIILTPNHTLRRLIQAWCTMNSSYGVERIPTPKPPTTKTLIEKLFKEASDSSDSPHLLIQTLKKLKTIASESETNRRCIESAGAVEFLASIVTKNNTSCSSSCSATELIEASFDDDDVEGFAFDFKIGAEDEAINILYSLQLSEQGLKALLNFKNGEFIDSLMRLLQKGNYDSRTYAIFLLKSMSKVADPSKLANLKTEFFIELVQLLKDQISKKASKATLQTLIQLVEFGRNRVKAIESGCVSALIELLLDCKERKPCEMILVLLEMLCQCADGRFELLSHGCGLAIVSKKILRVSTMANDRAVRILLSVSRFSATHFVIQEMLRIGVVAKLCLVLQVDSGNKAKEKAREILKLHSKSWMNSHCIPFNLLASYPTSG