AlfalfaGEDB | MS.gene41032

M. sativa cultivar XinJiangDaYe / MS.gene41032

KEGG: -
GO: GO:0003674 GO:0003824 GO:0004842 GO:0006464 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0032446 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0070647 GO:0071704 GO:0140096 GO:1901564
PFAM: PF04564.18

Nr:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene41032.t1	RHN79432.1	95.5	441	16	2	1	441	1	437	1.50E-230	808.5

Swissprot:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene41032.t1	Q9SVC6	54.3	446	184	7	1	438	1	434	1.5e-122	441.0

Trembl:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene41032.t1	A0A396JPS1	95.5	441	16	2	1	441	1	437	1.1e-230	808.5

TFs/TRs:

Gene ID	Type	Classification

Protein Kinases:

Gene ID	Type	Classification

Network:

Co-expression Network:

Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene049281	MS.gene41032	0.809628	1.72E-50	-1.69E-46
MS.gene050381	MS.gene41032	0.822853	1.90E-53	-1.69E-46
MS.gene050868	MS.gene41032	-0.803026	4.24E-49	-1.69E-46
MS.gene050883	MS.gene41032	0.806472	8.09E-50	-1.69E-46
MS.gene051044	MS.gene41032	0.848671	5.28E-60	-1.69E-46
MS.gene051127	MS.gene41032	0.838654	2.53E-57	-1.69E-46
MS.gene051138	MS.gene41032	0.83855	2.69E-57	-1.69E-46
MS.gene051946	MS.gene41032	0.804833	1.79E-49	-1.69E-46
MS.gene052083	MS.gene41032	0.804405	2.19E-49	-1.69E-46
MS.gene052211	MS.gene41032	0.817922	2.56E-52	-1.69E-46
MS.gene053420	MS.gene41032	0.823952	1.05E-53	-1.69E-46
MS.gene053488	MS.gene41032	0.811288	7.55E-51	-1.69E-46
MS.gene053561	MS.gene41032	0.801938	7.11E-49	-1.69E-46
MS.gene053887	MS.gene41032	0.839161	1.87E-57	-1.69E-46
MS.gene055124	MS.gene41032	0.801784	7.65E-49	-1.69E-46
MS.gene055139	MS.gene41032	0.803498	3.39E-49	-1.69E-46
MS.gene055154	MS.gene41032	0.812844	3.45E-51	-1.69E-46
MS.gene055202	MS.gene41032	0.806026	1.00E-49	-1.69E-46
MS.gene05589	MS.gene41032	-0.814078	1.85E-51	-1.69E-46
MS.gene055942	MS.gene41032	0.808705	2.72E-50	-1.69E-46
MS.gene056224	MS.gene41032	0.800717	1.26E-48	-1.69E-46
MS.gene056504	MS.gene41032	-0.801971	7.00E-49	-1.69E-46
MS.gene056748	MS.gene41032	0.800167	1.64E-48	-1.69E-46
MS.gene056856	MS.gene41032	0.811047	8.51E-51	-1.69E-46
MS.gene057014	MS.gene41032	0.81357	2.39E-51	-1.69E-46
MS.gene058099	MS.gene41032	0.828778	7.44E-55	-1.69E-46
MS.gene058117	MS.gene41032	0.802126	6.51E-49	-1.69E-46
MS.gene058171	MS.gene41032	0.817202	3.73E-52	-1.69E-46
MS.gene058173	MS.gene41032	0.81018	1.31E-50	-1.69E-46
MS.gene058175	MS.gene41032	0.819009	1.45E-52	-1.69E-46
MS.gene058493	MS.gene41032	0.802814	4.69E-49	-1.69E-46
MS.gene058603	MS.gene41032	0.823618	1.26E-53	-1.69E-46
MS.gene059690	MS.gene41032	0.824385	8.31E-54	-1.69E-46
MS.gene059691	MS.gene41032	0.805859	1.09E-49	-1.69E-46
MS.gene059694	MS.gene41032	0.83409	3.66E-56	-1.69E-46
MS.gene059697	MS.gene41032	0.836145	1.11E-56	-1.69E-46
MS.gene059916	MS.gene41032	0.805601	1.23E-49	-1.69E-46
MS.gene06077	MS.gene41032	-0.802708	4.93E-49	-1.69E-46
MS.gene061044	MS.gene41032	0.808333	3.26E-50	-1.69E-46

PPI:

Gene1	Gene2	Type
MS.gene41032	MS.gene41036	PPI
MS.gene41032	MS.gene008306	PPI
MS.gene066125	MS.gene41032	PPI
MS.gene41032	MS.gene93972	PPI
MS.gene41032	MS.gene41211	PPI
MS.gene41032	MS.gene064492	PPI
MS.gene41032	MS.gene26139	PPI
MS.gene41032	MS.gene72611	PPI
MS.gene41032	MS.gene048677	PPI
MS.gene41035	MS.gene41032	PPI
MS.gene41032	MS.gene042912	PPI
MS.gene41032	MS.gene071765	PPI
MS.gene061543	MS.gene41032	PPI
MS.gene41032	MS.gene034756	PPI
MS.gene41032	MS.gene022190	PPI
MS.gene41032	MS.gene017373	PPI
MS.gene04998	MS.gene41032	PPI
MS.gene41032	MS.gene061546	PPI

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene41032.t1	MTR_1g056880	95.011	441	18	2	1	441	1	437	0.0	837
MS.gene41032.t1	MTR_1g056870	93.424	441	25	2	1	441	1	437	0.0	821
MS.gene41032.t1	MTR_1g056840	88.662	441	20	3	1	441	1	411	0.0	771
MS.gene41032.t1	MTR_7g106340	65.000	440	130	7	1	438	1	418	0.0	552
MS.gene41032.t1	MTR_2g087350	54.483	435	164	4	4	438	3	403	1.97e-151	436
MS.gene41032.t1	MTR_1g056910	39.815	432	220	8	4	430	3	399	4.80e-102	310
MS.gene41032.t1	MTR_4g051515	36.735	441	240	8	4	437	3	411	4.46e-92	285
MS.gene41032.t1	MTR_3g065080	32.671	453	239	12	3	437	32	436	4.47e-58	197
MS.gene41032.t1	MTR_5g048050	32.564	433	239	13	2	418	20	415	9.94e-54	186
MS.gene41032.t1	MTR_6g071340	31.915	423	237	12	11	418	9	395	7.79e-53	182
MS.gene41032.t1	MTR_5g077510	32.798	436	244	15	4	429	32	428	1.06e-52	183
MS.gene41032.t1	MTR_4g085720	31.075	428	248	11	1	423	8	393	6.11e-44	159
MS.gene41032.t1	MTR_8g092870	27.828	442	273	12	5	431	8	418	2.72e-33	130
MS.gene41032.t1	MTR_3g095730	27.991	443	269	12	5	431	11	419	9.92e-30	120
MS.gene41032.t1	MTR_4g063800	25.408	429	262	13	11	430	259	638	6.70e-27	114
MS.gene41032.t1	MTR_4g485520	27.900	319	168	9	11	315	109	379	1.05e-25	109
MS.gene41032.t1	MTR_4g485520	27.900	319	168	9	11	315	277	547	1.52e-25	110
MS.gene41032.t1	MTR_7g059405	26.716	408	255	13	11	418	268	631	1.98e-25	109
MS.gene41032.t1	MTR_5g015210	26.366	421	262	9	6	426	66	438	7.89e-25	106
MS.gene41032.t1	MTR_3g096370	26.340	429	269	15	4	423	7	397	1.21e-24	105
MS.gene41032.t1	MTR_7g078330	30.742	283	159	10	11	274	278	542	1.01e-23	104
MS.gene41032.t1	MTR_2g018010	29.412	323	161	11	11	313	296	571	8.15e-23	101
MS.gene41032.t1	MTR_5g083030	25.706	354	198	10	11	342	297	607	4.78e-22	99.4
MS.gene41032.t1	MTR_4g107010	27.896	423	246	19	11	418	284	662	3.55e-21	97.1
MS.gene41032.t1	MTR_1g094215	28.152	341	184	12	11	339	68	359	1.21e-19	91.3
MS.gene41032.t1	MTR_3g085610	25.427	468	284	18	13	441	286	727	1.69e-19	91.7
MS.gene41032.t1	MTR_1g094215	28.152	341	184	12	11	339	251	542	3.57e-19	90.5
MS.gene41032.t1	MTR_8g080280	27.938	451	249	22	13	418	288	707	3.37e-18	87.8
MS.gene41032.t1	MTR_3g078160	25.822	426	249	16	11	418	279	655	1.43e-17	85.9
MS.gene41032.t1	MTR_5g034440	26.829	369	235	13	11	375	284	621	1.91e-17	85.5
MS.gene41032.t1	MTR_3g078160	25.822	426	249	16	11	418	279	655	2.04e-17	85.1
MS.gene41032.t1	MTR_4g028960	35.088	171	77	7	2	151	273	430	4.87e-17	84.0
MS.gene41032.t1	MTR_4g091880	26.098	410	248	13	11	418	9	365	7.30e-17	82.4
MS.gene41032.t1	MTR_7g097020	45.679	81	37	2	5	85	239	312	1.34e-16	82.8
MS.gene41032.t1	MTR_1g069845	47.945	73	31	2	9	81	126	191	4.95e-16	80.9
MS.gene41032.t1	MTR_7g053260	42.500	80	39	2	1	80	72	144	8.57e-16	79.7
MS.gene41032.t1	MTR_1g069845	45.455	77	35	2	5	81	239	308	8.65e-16	80.1
MS.gene41032.t1	MTR_1g069845	45.455	77	35	2	5	81	243	312	8.84e-16	80.1
MS.gene41032.t1	MTR_7g116600	45.745	94	40	4	11	104	82	164	9.32e-16	79.3
MS.gene41032.t1	MTR_1g017770	33.728	169	96	6	5	172	42	195	3.44e-15	77.8
MS.gene41032.t1	MTR_8g077205	44.086	93	39	4	5	95	159	240	8.02e-15	77.0
MS.gene41032.t1	MTR_8g077205	44.086	93	39	4	5	95	271	352	1.11e-14	76.6
MS.gene41032.t1	MTR_2g011140	26.415	318	190	9	13	330	21	294	2.23e-14	74.7
MS.gene41032.t1	MTR_3g115670	25.581	215	118	7	11	207	34	224	3.18e-14	75.5
MS.gene41032.t1	MTR_4g091880	25.060	415	218	15	11	418	9	337	4.37e-14	73.6
MS.gene41032.t1	MTR_5g020570	43.878	98	40	6	1	95	265	350	5.11e-14	74.7
MS.gene41032.t1	MTR_3g078160	46.154	91	41	3	11	100	279	362	6.05e-14	74.3
MS.gene41032.t1	MTR_5g020570	43.878	98	40	6	1	95	280	365	6.16e-14	74.3
MS.gene41032.t1	MTR_8g103227	39.326	89	40	3	11	99	399	473	5.70e-13	71.6
MS.gene41032.t1	MTR_3g466220	41.667	84	42	2	2	85	207	283	6.29e-13	71.2
MS.gene41032.t1	MTR_3g466220	41.667	84	42	2	2	85	228	304	6.53e-13	71.2
MS.gene41032.t1	MTR_1g090320	43.243	74	36	2	11	84	517	584	1.63e-12	70.5
MS.gene41032.t1	MTR_1g090320	43.243	74	36	2	11	84	519	586	1.70e-12	70.1
MS.gene41032.t1	MTR_1g079450	38.462	91	45	4	5	95	61	140	3.99e-12	68.2
MS.gene41032.t1	MTR_7g117890	41.667	84	42	2	2	85	250	326	6.64e-12	68.2
MS.gene41032.t1	MTR_1g093995	47.887	71	27	3	20	90	1	61	8.53e-12	64.7
MS.gene41032.t1	MTR_2g096850	37.500	80	43	2	1	80	583	655	6.93e-11	64.7
MS.gene41032.t1	MTR_2g096850	37.500	80	43	2	1	80	734	806	8.43e-11	64.7

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene41032.t1	AT3G52450	54.054	444	188	6	1	438	1	434	6.99e-158	453
MS.gene41032.t1	AT2G35930	50.905	442	176	5	1	438	6	410	7.38e-155	445
MS.gene41032.t1	AT3G11840	34.968	469	239	9	3	435	6	444	1.47e-78	251
MS.gene41032.t1	AT3G19380	33.643	431	240	9	1	423	8	400	2.37e-51	179
MS.gene41032.t1	AT5G37490	29.817	436	255	14	4	429	28	422	9.29e-48	169
MS.gene41032.t1	AT1G49780	31.828	443	255	11	1	432	8	414	2.10e-45	163
MS.gene41032.t1	AT1G66160	28.837	430	247	14	2	421	26	406	8.12e-43	156
MS.gene41032.t1	AT1G66160	26.291	426	241	14	4	421	30	390	3.02e-30	121
MS.gene41032.t1	AT5G09800	28.702	439	253	16	10	431	14	409	9.31e-29	117
MS.gene41032.t1	AT2G28830	28.369	423	262	18	2	421	178	562	1.13e-28	119
MS.gene41032.t1	AT1G23030	26.316	418	250	14	11	422	245	610	1.53e-27	115
MS.gene41032.t1	AT3G18710	26.862	443	271	11	5	431	10	415	1.19e-26	111
MS.gene41032.t1	AT5G64660	26.327	452	269	14	5	431	8	420	7.45e-25	106
MS.gene41032.t1	AT3G54850	29.677	310	183	12	7	316	248	522	1.08e-24	107
MS.gene41032.t1	AT1G71020	26.761	426	247	14	11	422	99	473	1.30e-24	106
MS.gene41032.t1	AT1G71020	26.761	426	247	14	11	422	247	621	1.70e-24	106
MS.gene41032.t1	AT3G46510	25.806	434	254	15	2	421	250	629	6.77e-24	105
MS.gene41032.t1	AT5G42340	29.054	296	167	8	11	306	294	546	1.07e-23	104
MS.gene41032.t1	AT3G49810	24.228	421	271	9	6	426	63	435	2.78e-21	96.3
MS.gene41032.t1	AT5G65920	24.113	423	269	10	6	426	59	431	1.13e-20	94.4
MS.gene41032.t1	AT5G65920	24.113	423	269	10	6	426	59	431	1.13e-20	94.4
MS.gene41032.t1	AT1G67530	26.770	452	260	14	13	418	278	704	2.43e-20	94.4
MS.gene41032.t1	AT1G67530	26.770	452	260	14	13	418	278	704	2.43e-20	94.4
MS.gene41032.t1	AT1G67530	26.770	452	260	14	13	418	278	704	2.43e-20	94.4
MS.gene41032.t1	AT5G01830	24.920	313	183	9	4	308	271	539	9.63e-18	86.3
MS.gene41032.t1	AT1G24330	25.056	447	270	18	13	418	281	703	1.73e-17	85.5
MS.gene41032.t1	AT1G24330	25.056	447	270	18	13	418	281	703	1.73e-17	85.5
MS.gene41032.t1	AT1G67530	48.352	91	35	4	13	103	278	356	1.80e-17	85.1
MS.gene41032.t1	AT1G29340	26.006	323	183	10	5	313	303	583	2.56e-17	85.1
MS.gene41032.t1	AT1G27910	43.810	105	48	4	13	117	285	378	2.92e-17	84.7
MS.gene41032.t1	AT1G10560	23.885	314	188	7	11	313	292	565	1.67e-16	82.4
MS.gene41032.t1	AT4G21350	24.752	404	250	12	11	412	9	360	2.56e-16	80.5
MS.gene41032.t1	AT3G54790	43.373	83	40	2	5	87	200	275	9.37e-15	77.0
MS.gene41032.t1	AT3G54790	43.373	83	40	2	5	87	236	311	1.13e-14	77.0
MS.gene41032.t1	AT3G54790	43.373	83	40	2	5	87	236	311	1.13e-14	77.0
MS.gene41032.t1	AT3G07360	47.500	80	32	3	11	90	78	147	1.95e-14	75.5
MS.gene41032.t1	AT3G02840	23.782	349	221	10	83	417	34	351	8.67e-14	73.2
MS.gene41032.t1	AT1G60190	24.791	359	207	14	13	354	284	596	2.99e-13	72.4
MS.gene41032.t1	AT2G23140	40.000	90	43	3	11	100	237	315	3.03e-13	72.4
MS.gene41032.t1	AT2G23140	40.000	90	43	3	11	100	234	312	3.16e-13	72.4
MS.gene41032.t1	AT2G23140	40.000	90	43	3	11	100	234	312	3.16e-13	72.4
MS.gene41032.t1	AT2G23140	40.000	90	43	3	11	100	45	123	3.69e-13	72.0
MS.gene41032.t1	AT2G23140	40.000	90	43	3	11	100	45	123	3.69e-13	72.0
MS.gene41032.t1	AT1G01660	39.474	76	39	2	10	85	501	569	1.61e-12	69.7
MS.gene41032.t1	AT1G01660	39.474	76	39	2	10	85	500	568	1.65e-12	69.7
MS.gene41032.t1	AT2G45920	40.741	81	41	2	6	86	324	397	2.07e-11	65.9
MS.gene41032.t1	AT5G18340	35.455	110	58	4	5	114	72	168	2.47e-11	65.9

Find 51 sgRNAs with CRISPR-Local

Find 70 sgRNAs with CRISPR-GE

CRISPR-Local

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
TTGATGCTTTCTTTGATATT+TGG	0.178417	1.3:-41649350	None:intergenic
TTAATTCAACTTGTCGAATT+TGG	0.215058	1.3:+41649390	MS.gene41032:CDS
TCAAGTTGATAGTGGAAATA+AGG	0.246468	1.3:+41649731	MS.gene41032:CDS
TTCATGAGTTGTAGTGAAAT+AGG	0.280796	1.3:-41648571	None:intergenic
TATGAAGCAAGTAAATTAAA+AGG	0.308972	1.3:-41649819	None:intergenic
TTTAGATTGGCTAGCTTTGA+TGG	0.325195	1.3:-41649288	None:intergenic
AACTCCATTAGAAGAATTCA+TGG	0.334251	1.3:-41648776	None:intergenic
AAAGCCATGTGAGATGATTT+TGG	0.361012	1.3:+41649488	MS.gene41032:CDS
ATTCAAGAAATGTTACGAAT+TGG	0.378143	1.3:+41649681	MS.gene41032:CDS
TTAAATTGCATTCAAAGTCT+TGG	0.383883	1.3:+41649778	MS.gene41032:CDS
ATGCCTGTTGAGACAGTAAC+TGG	0.387709	1.3:-41648598	None:intergenic
TTTAATGAGATTATTGCAAA+AGG	0.403896	1.3:+41649203	MS.gene41032:CDS
AGAGTAAAAGCAATTGAATC+AGG	0.420580	1.3:+41649420	MS.gene41032:CDS
TGTTGTTGCAAAGCTTTGTT+TGG	0.427050	1.3:+41649704	MS.gene41032:CDS
TCATGAGTTGTAGTGAAATA+GGG	0.428583	1.3:-41648570	None:intergenic
TGCACCATGAATTCTTCTAA+TGG	0.430753	1.3:+41648772	MS.gene41032:CDS
TTTGATGATGATGATGTTGA+AGG	0.466030	1.3:+41649057	MS.gene41032:CDS
GATCCAGTTACTGTCTCAAC+AGG	0.466859	1.3:+41648595	MS.gene41032:CDS
AATTCATGGTGCACCATGCT+TGG	0.475436	1.3:-41648762	None:intergenic
TTAATGAGATTATTGCAAAA+GGG	0.503906	1.3:+41649204	MS.gene41032:CDS
TTGGTTCTTCAAGTTGATAG+TGG	0.510674	1.3:+41649723	MS.gene41032:CDS
CCGACGATTTGTTTCGCTCT+CGG	0.515538	1.3:-41648929	None:intergenic
AGTCTACGAAGAGTGTGGTT+TGG	0.516469	1.3:-41648736	None:intergenic
ATGTTATGTCAATGTGCTGA+TGG	0.528834	1.3:+41649522	MS.gene41032:CDS
AGGGTTTGGATAAGTAAATG+AGG	0.542957	1.3:-41648883	None:intergenic
ATTCTTCTAATGGAGTTGAA+AGG	0.553075	1.3:+41648782	MS.gene41032:CDS
GAACTCTTAAGCCATGGATG+TGG	0.556866	1.3:+41649552	MS.gene41032:CDS
ATAAGGCAAAGGAGAAAGCA+AGG	0.557452	1.3:+41649748	MS.gene41032:CDS
AGATTTGAACTCTTAAGCCA+TGG	0.566041	1.3:+41649546	MS.gene41032:CDS
TTCGATGCTTTCTCTGTCGT+AGG	0.572900	1.3:-41648623	None:intergenic
TTGTTTCAAAGAAGATTCTG+AGG	0.575868	1.3:+41649583	MS.gene41032:CDS
CTGATAATTGAAGACTGTAA+AGG	0.581818	1.3:-41649128	None:intergenic
TATTTCACTACAACTCATGA+AGG	0.582520	1.3:+41648573	MS.gene41032:CDS
CTTGCTTCATACCCAACAAG+TGG	0.584581	1.3:+41649831	MS.gene41032:CDS
TGATAGTGGAAATAAGGCAA+AGG	0.584798	1.3:+41649737	MS.gene41032:CDS
TGCTAAGAACTCGACTGCAC+CGG	0.586369	1.3:-41648965	None:intergenic
TGTTTCAAAGAAGATTCTGA+GGG	0.599159	1.3:+41649584	MS.gene41032:CDS
GATTCTGAGGGTTTCCACCA+TGG	0.603397	1.3:+41649596	MS.gene41032:CDS
AGCTCTATCATTAGCCATGG+TGG	0.603908	1.3:-41649610	None:intergenic
CACAGCTCTATCATTAGCCA+TGG	0.609746	1.3:-41649613	None:intergenic
AGTCTTCAATTATCAGAACA+AGG	0.612660	1.3:+41649135	MS.gene41032:CDS
CAATAGCTAAACCACATCCA+TGG	0.618916	1.3:-41649563	None:intergenic
TTCGTAGACTCATCCAAGCA+TGG	0.622209	1.3:+41648749	MS.gene41032:CDS
CGTCGGTGTATCGAATCAGC+CGG	0.622512	1.3:+41648946	MS.gene41032:CDS
GTTGTAGTGAAATAGGGCAA+AGG	0.623621	1.3:-41648564	None:intergenic
TAAGGCAAAGGAGAAAGCAA+GGG	0.629025	1.3:+41649749	MS.gene41032:CDS
GGATGAGTCTACGAAGAGTG+TGG	0.646535	1.3:-41648741	None:intergenic
TTGCTTCATACCCAACAAGT+GGG	0.653316	1.3:+41649832	MS.gene41032:CDS
AGCACCAAAATCATCTCACA+TGG	0.654659	1.3:-41649492	None:intergenic
CCGAGAGCGAAACAAATCGT+CGG	0.679598	1.3:+41648929	MS.gene41032:CDS
TGGCTAATGATAGAGCTGTG+AGG	0.775637	1.3:+41649616	MS.gene41032:CDS

CRISPR-GE

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
!!	TATGAAGCAAGTAAATTAAA+AGG	-	chr1.3:41649822-41649841	None:intergenic	20.0%
!!	TTAATGAGATTATTGCAAAA+GGG	+	chr1.3:41649204-41649223	MS.gene41032:CDS	20.0%
!!	TTTAATGAGATTATTGCAAA+AGG	+	chr1.3:41649203-41649222	MS.gene41032:CDS	20.0%
!	ATTCAAGAAATGTTACGAAT+TGG	+	chr1.3:41649681-41649700	MS.gene41032:CDS	25.0%
!	TTAAATTGCATTCAAAGTCT+TGG	+	chr1.3:41649778-41649797	MS.gene41032:CDS	25.0%
!	TTAATTCAACTTGTCGAATT+TGG	+	chr1.3:41649390-41649409	MS.gene41032:CDS	25.0%
!	TTGATGCTTTCTTTGATATT+TGG	-	chr1.3:41649353-41649372	None:intergenic	25.0%
!!!	ATTCTCCATTTTTGAAGTTT+AGG	-	chr1.3:41649173-41649192	None:intergenic	25.0%
!!!	GATTGTTTTGAGCTTTTTTA+GGG	-	chr1.3:41648905-41648924	None:intergenic	25.0%
!!!	TTTGAAGAGTTTTTCAATGA+GGG	-	chr1.3:41648839-41648858	None:intergenic	25.0%
!!!	TTTGCTTTTGACTTCAAAAT+AGG	+	chr1.3:41649081-41649100	MS.gene41032:CDS	25.0%
	AACTAACTCGATGAAAAACT+CGG	-	chr1.3:41649316-41649335	None:intergenic	30.0%
	AACTCCATTAGAAGAATTCA+TGG	-	chr1.3:41648779-41648798	None:intergenic	30.0%
	AGAGTAAAAGCAATTGAATC+AGG	+	chr1.3:41649420-41649439	MS.gene41032:CDS	30.0%
	AGTCTTCAATTATCAGAACA+AGG	+	chr1.3:41649135-41649154	MS.gene41032:CDS	30.0%
	ATTCTTCTAATGGAGTTGAA+AGG	+	chr1.3:41648782-41648801	MS.gene41032:CDS	30.0%
	CTGATAATTGAAGACTGTAA+AGG	-	chr1.3:41649131-41649150	None:intergenic	30.0%
	TATTTCACTACAACTCATGA+AGG	+	chr1.3:41648573-41648592	MS.gene41032:CDS	30.0%
	TCATGAGTTGTAGTGAAATA+GGG	-	chr1.3:41648573-41648592	None:intergenic	30.0%
	TGTTTCAAAGAAGATTCTGA+GGG	+	chr1.3:41649584-41649603	MS.gene41032:CDS	30.0%
	TTCATGAGTTGTAGTGAAAT+AGG	-	chr1.3:41648574-41648593	None:intergenic	30.0%
	TTGTTTCAAAGAAGATTCTG+AGG	+	chr1.3:41649583-41649602	MS.gene41032:CDS	30.0%
!!	CTTTGAAGAGTTTTTCAATG+AGG	-	chr1.3:41648840-41648859	None:intergenic	30.0%
!!	TCAAGTTGATAGTGGAAATA+AGG	+	chr1.3:41649731-41649750	MS.gene41032:CDS	30.0%
!!	TTTGATGATGATGATGTTGA+AGG	+	chr1.3:41649057-41649076	MS.gene41032:CDS	30.0%
!!!	CGATTGTTTTGAGCTTTTTT+AGG	-	chr1.3:41648906-41648925	None:intergenic	30.0%
!!!	TTTTGAGCTTTTTTAGGGTT+TGG	-	chr1.3:41648900-41648919	None:intergenic	30.0%
	AGATTTGAACTCTTAAGCCA+TGG	+	chr1.3:41649546-41649565	MS.gene41032:CDS	35.0%
	AGGGTTTGGATAAGTAAATG+AGG	-	chr1.3:41648886-41648905	None:intergenic	35.0%
	ATGTTATGTCAATGTGCTGA+TGG	+	chr1.3:41649522-41649541	MS.gene41032:CDS	35.0%
	GAAAAACTCGGTCTTTAGAT+TGG	-	chr1.3:41649304-41649323	None:intergenic	35.0%
	GAAATAGGGCAAAGGAAAAA+TGG	-	chr1.3:41648559-41648578	None:intergenic	35.0%
	GCTCTCCTAAACTTCAAAAA+TGG	+	chr1.3:41649165-41649184	MS.gene41032:CDS	35.0%
	TGCACCATGAATTCTTCTAA+TGG	+	chr1.3:41648772-41648791	MS.gene41032:CDS	35.0%
!	AAAGCCATGTGAGATGATTT+TGG	+	chr1.3:41649488-41649507	MS.gene41032:CDS	35.0%
!	CGAAAAATGGCTCTTTTCAT+CGG	+	chr1.3:41648642-41648661	MS.gene41032:CDS	35.0%
!!	ACAGAGAAAGCATCGAAAAA+TGG	+	chr1.3:41648629-41648648	MS.gene41032:CDS	35.0%
!!	TCAATGAGGGTTTTTGTTGT+TGG	-	chr1.3:41648826-41648845	None:intergenic	35.0%
!!	TGATAGTGGAAATAAGGCAA+AGG	+	chr1.3:41649737-41649756	MS.gene41032:CDS	35.0%
!!	TGTTGTTGCAAAGCTTTGTT+TGG	+	chr1.3:41649704-41649723	MS.gene41032:CDS	35.0%
!!	TTGGTTCTTCAAGTTGATAG+TGG	+	chr1.3:41649723-41649742	MS.gene41032:CDS	35.0%
!!	TTTAGATTGGCTAGCTTTGA+TGG	-	chr1.3:41649291-41649310	None:intergenic	35.0%
!!!	GTTTTTGTTGTTGGAGGTTT+TGG	-	chr1.3:41648817-41648836	None:intergenic	35.0%
!!!	TGAGATGATTTTGGTGCTTT+TGG	+	chr1.3:41649497-41649516	MS.gene41032:CDS	35.0%
	AGCACCAAAATCATCTCACA+TGG	-	chr1.3:41649495-41649514	None:intergenic	40.0%
	ATAAGGCAAAGGAGAAAGCA+AGG	+	chr1.3:41649748-41649767	MS.gene41032:CDS	40.0%
	CAATAGCTAAACCACATCCA+TGG	-	chr1.3:41649566-41649585	None:intergenic	40.0%
	GTTGTAGTGAAATAGGGCAA+AGG	-	chr1.3:41648567-41648586	None:intergenic	40.0%
	TAAGGCAAAGGAGAAAGCAA+GGG	+	chr1.3:41649749-41649768	MS.gene41032:CDS	40.0%
	TTGCTTCATACCCAACAAGT+GGG	+	chr1.3:41649832-41649851	MS.gene41032:CDS	40.0%
!!!	ATGAGGGTTTTTGTTGTTGG+AGG	-	chr1.3:41648823-41648842	None:intergenic	40.0%
!!!	GTGAGTTGTTGTTTTGTGAC+AGG	-	chr1.3:41648682-41648701	None:intergenic	40.0%
	AATTCATGGTGCACCATGCT+TGG	-	chr1.3:41648765-41648784	None:intergenic	45.0%
	AGCTCTATCATTAGCCATGG+TGG	-	chr1.3:41649613-41649632	None:intergenic	45.0%
	ATGCCTGTTGAGACAGTAAC+TGG	-	chr1.3:41648601-41648620	None:intergenic	45.0%
	CACAGCTCTATCATTAGCCA+TGG	-	chr1.3:41649616-41649635	None:intergenic	45.0%
	CTTGCTTCATACCCAACAAG+TGG	+	chr1.3:41649831-41649850	MS.gene41032:CDS	45.0%
	GAACTCTTAAGCCATGGATG+TGG	+	chr1.3:41649552-41649571	MS.gene41032:CDS	45.0%
	GATCCAGTTACTGTCTCAAC+AGG	+	chr1.3:41648595-41648614	MS.gene41032:CDS	45.0%
	TGGCTAATGATAGAGCTGTG+AGG	+	chr1.3:41649616-41649635	MS.gene41032:CDS	45.0%
	TTCGATGCTTTCTCTGTCGT+AGG	-	chr1.3:41648626-41648645	None:intergenic	45.0%
	TTCGTAGACTCATCCAAGCA+TGG	+	chr1.3:41648749-41648768	MS.gene41032:CDS	45.0%
!	AGTCTACGAAGAGTGTGGTT+TGG	-	chr1.3:41648739-41648758	None:intergenic	45.0%
!!!	GTTGTTGGAGGTTTTGGAGT+TGG	-	chr1.3:41648811-41648830	None:intergenic	45.0%
	CCGAGAGCGAAACAAATCGT+CGG	+	chr1.3:41648929-41648948	MS.gene41032:CDS	50.0%
	GGATGAGTCTACGAAGAGTG+TGG	-	chr1.3:41648744-41648763	None:intergenic	50.0%
	TGCTAAGAACTCGACTGCAC+CGG	-	chr1.3:41648968-41648987	None:intergenic	50.0%
!	CCGACGATTTGTTTCGCTCT+CGG	-	chr1.3:41648932-41648951	None:intergenic	50.0%
!	GATTCTGAGGGTTTCCACCA+TGG	+	chr1.3:41649596-41649615	MS.gene41032:CDS	50.0%
	CGTCGGTGTATCGAATCAGC+CGG	+	chr1.3:41648946-41648965	MS.gene41032:CDS	55.0%

Chromosome	Type	Strat	End	Strand	Name
chr1.3	gene	41648532	41649857	41648532	ID=MS.gene41032
chr1.3	mRNA	41648532	41649857	41648532	ID=MS.gene41032.t1;Parent=MS.gene41032
chr1.3	exon	41648532	41649857	41648532	ID=MS.gene41032.t1.exon1;Parent=MS.gene41032.t1
chr1.3	CDS	41648532	41649857	41648532	ID=cds.MS.gene41032.t1;Parent=MS.gene41032.t1

Gene Sequence

>MS.gene41032

ATGAATCAAGATATCGAAGTTACACCATTTTTCCTTTGCCCTATTTCACTACAACTCATGAAGGATCCAGTTACTGTCTCAACAGGCATAACCTACGACAGAGAAAGCATCGAAAAATGGCTCTTTTCATCGGAAAACAAAACATGTCCTGTCACAAAACAACAACTCACACATGATGATGCAAATGATCTCATTATTCTCACTCCAAACCACACTCTTCGTAGACTCATCCAAGCATGGTGCACCATGAATTCTTCTAATGGAGTTGAAAGGATTCCAACTCCAAAACCTCCAACAACAAAAACCCTCATTGAAAAACTCTTCAAAGAAGCTTCTGATTCTTCAGATTCACCTCATTTACTTATCCAAACCCTAAAAAAGCTCAAAACAATCGCTTCCGAGAGCGAAACAAATCGTCGGTGTATCGAATCAGCCGGTGCAGTCGAGTTCTTAGCATCAATAGTAACAAAAAACAACACAAGTTGTTCATCTTCTTGTTCAGCAACAGAATTAATTGAAGCTAGCTTTGATGATGATGATGTTGAAGGTTTTGCTTTTGACTTCAAAATAGGTGCAGAAGATGAAGCTATAAACATCCTTTACAGTCTTCAATTATCAGAACAAGGTTTGAAAGCTCTCCTAAACTTCAAAAATGGAGAATTTATAGACTCTTTAATGAGATTATTGCAAAAGGGTAACTACGATTCAAGAACATACGCAATCTTTCTGTTGAAATCTATGTCAAAAGTAGCTGATCCATCAAAGCTAGCCAATCTAAAGACCGAGTTTTTCATCGAGTTAGTTCAACTTCTCAAAGACCAAATATCAAAGAAAGCATCAAAAGCAACACTACAAACGTTAATTCAACTTGTCGAATTTGGTAGAAATAGAGTAAAAGCAATTGAATCAGGTTGTGTTTCTGCTTTGATAGAACTTCTTCTTGATTGCAAAGAAAGAAAGCCATGTGAGATGATTTTGGTGCTTTTGGAGATGTTATGTCAATGTGCTGATGGAAGATTTGAACTCTTAAGCCATGGATGTGGTTTAGCTATTGTTTCAAAGAAGATTCTGAGGGTTTCCACCATGGCTAATGATAGAGCTGTGAGGATTCTTCTATCTGTTTCAAGATTTTCTGCAACACATTTTGTTATTCAAGAAATGTTACGAATTGGTGTTGTTGCAAAGCTTTGTTTGGTTCTTCAAGTTGATAGTGGAAATAAGGCAAAGGAGAAAGCAAGGGAGATTCTTAAATTGCATTCAAAGTCTTGGATGAATTCTCATTGCATACCTTTTAATTTACTTGCTTCATACCCAACAAGTGGGTAA

Protein sequence

>MS.gene41032.t1

MNQDIEVTPFFLCPISLQLMKDPVTVSTGITYDRESIEKWLFSSENKTCPVTKQQLTHDDANDLIILTPNHTLRRLIQAWCTMNSSNGVERIPTPKPPTTKTLIEKLFKEASDSSDSPHLLIQTLKKLKTIASESETNRRCIESAGAVEFLASIVTKNNTSCSSSCSATELIEASFDDDDVEGFAFDFKIGAEDEAINILYSLQLSEQGLKALLNFKNGEFIDSLMRLLQKGNYDSRTYAIFLLKSMSKVADPSKLANLKTEFFIELVQLLKDQISKKASKATLQTLIQLVEFGRNRVKAIESGCVSALIELLLDCKERKPCEMILVLLEMLCQCADGRFELLSHGCGLAIVSKKILRVSTMANDRAVRILLSVSRFSATHFVIQEMLRIGVVAKLCLVLQVDSGNKAKEKAREILKLHSKSWMNSHCIPFNLLASYPTSG