AlfalfaGEDB | MS.gene45454

M. sativa cultivar XinJiangDaYe / MS.gene45454

KEGG: -
GO: GO:0003674 GO:0003824 GO:0004842 GO:0006464 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0032446 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0070647 GO:0071704 GO:0140096 GO:1901564
PFAM: PF04564.18

Nr:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene45454.t1	RHN79432.1	95.9	440	14	2	1	440	1	436	4.40E-230	807

Swissprot:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene45454.t1	Q9SVC6	53.7	445	188	6	1	438	1	434	2.6e-122	440.3

Trembl:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene45454.t1	A0A396JPS1	95.9	440	14	2	1	440	1	436	3.2e-230	807.0

TFs/TRs:

Gene ID	Type	Classification

Protein Kinases:

Gene ID	Type	Classification

Network:

Co-expression Network:

Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene049281	MS.gene45454	0.803668	3.12E-49	-1.69E-46
MS.gene050381	MS.gene45454	0.823078	1.68E-53	-1.69E-46
MS.gene051044	MS.gene45454	0.829393	5.28E-55	-1.69E-46
MS.gene051127	MS.gene45454	0.83153	1.58E-55	-1.69E-46
MS.gene051138	MS.gene45454	0.83015	3.45E-55	-1.69E-46
MS.gene051946	MS.gene45454	0.801685	8.01E-49	-1.69E-46
MS.gene053420	MS.gene45454	0.812783	3.56E-51	-1.69E-46
MS.gene053488	MS.gene45454	0.811274	7.60E-51	-1.69E-46
MS.gene053887	MS.gene45454	0.807837	4.16E-50	-1.69E-46
MS.gene055124	MS.gene45454	0.80693	6.47E-50	-1.69E-46
MS.gene056856	MS.gene45454	0.805141	1.54E-49	-1.69E-46
MS.gene057293	MS.gene45454	0.802648	5.08E-49	-1.69E-46
MS.gene058099	MS.gene45454	0.81664	4.98E-52	-1.69E-46
MS.gene058171	MS.gene45454	0.811	8.71E-51	-1.69E-46
MS.gene058173	MS.gene45454	0.800557	1.36E-48	-1.69E-46
MS.gene058175	MS.gene45454	0.813602	2.36E-51	-1.69E-46
MS.gene058603	MS.gene45454	0.800516	1.39E-48	-1.69E-46
MS.gene059690	MS.gene45454	0.809481	1.85E-50	-1.69E-46
MS.gene059691	MS.gene45454	0.810037	1.41E-50	-1.69E-46
MS.gene059694	MS.gene45454	0.815494	8.98E-52	-1.69E-46
MS.gene059697	MS.gene45454	0.823266	1.52E-53	-1.69E-46
MS.gene059916	MS.gene45454	0.819716	1.00E-52	-1.69E-46

PPI:

Gene1	Gene2	Type
MS.gene061546	MS.gene45454	PPI
MS.gene064492	MS.gene45454	PPI
MS.gene042912	MS.gene45454	PPI
MS.gene93972	MS.gene45454	PPI
MS.gene022190	MS.gene45454	PPI
MS.gene45454	MS.gene41211	PPI
MS.gene017373	MS.gene45454	PPI
MS.gene04998	MS.gene45454	PPI
MS.gene048677	MS.gene45454	PPI
MS.gene45454	MS.gene72611	PPI
MS.gene41035	MS.gene45454	PPI
MS.gene008306	MS.gene45454	PPI
MS.gene061543	MS.gene45454	PPI
MS.gene45454	MS.gene071765	PPI
MS.gene26139	MS.gene45454	PPI
MS.gene41036	MS.gene45454	PPI
MS.gene066125	MS.gene45454	PPI
MS.gene034756	MS.gene45454	PPI

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene45454.t1	MTR_1g056880	95.455	440	16	2	1	440	1	436	0.0	852
MS.gene45454.t1	MTR_1g056870	93.636	440	24	2	1	440	1	436	0.0	821
MS.gene45454.t1	MTR_1g056840	88.636	440	20	3	1	440	1	410	0.0	768
MS.gene45454.t1	MTR_7g106340	64.773	440	131	7	1	438	1	418	0.0	550
MS.gene45454.t1	MTR_2g087350	54.023	435	166	4	4	438	3	403	5.09e-152	437
MS.gene45454.t1	MTR_1g056910	40.972	432	215	8	4	430	3	399	4.25e-104	315
MS.gene45454.t1	MTR_4g051515	37.188	441	238	8	4	437	3	411	4.65e-92	285
MS.gene45454.t1	MTR_3g065080	33.113	453	237	12	3	437	32	436	5.79e-60	202
MS.gene45454.t1	MTR_5g077510	33.257	436	242	15	4	429	32	428	1.17e-53	186
MS.gene45454.t1	MTR_5g048050	31.235	429	250	11	2	418	20	415	8.30e-52	180
MS.gene45454.t1	MTR_6g071340	30.952	420	245	11	11	418	9	395	6.95e-51	177
MS.gene45454.t1	MTR_4g085720	30.607	428	250	11	1	423	8	393	2.39e-44	160
MS.gene45454.t1	MTR_8g092870	28.281	442	271	12	5	431	8	418	5.44e-34	132
MS.gene45454.t1	MTR_3g095730	27.765	443	270	12	5	431	11	419	2.18e-29	119
MS.gene45454.t1	MTR_4g063800	25.641	429	261	13	11	430	259	638	1.24e-26	113
MS.gene45454.t1	MTR_7g059405	27.451	408	252	15	11	418	268	631	1.87e-26	112
MS.gene45454.t1	MTR_3g096370	27.442	430	263	15	4	423	7	397	2.35e-26	110
MS.gene45454.t1	MTR_4g485520	27.900	319	168	9	11	315	109	379	1.34e-24	106
MS.gene45454.t1	MTR_4g485520	27.900	319	168	9	11	315	277	547	1.83e-24	106
MS.gene45454.t1	MTR_2g018010	28.571	322	165	11	11	313	296	571	9.07e-24	104
MS.gene45454.t1	MTR_5g015210	25.891	421	264	9	6	426	66	438	1.26e-23	103
MS.gene45454.t1	MTR_7g078330	30.035	283	161	10	11	274	278	542	2.03e-23	103
MS.gene45454.t1	MTR_4g107010	28.504	421	246	18	11	418	284	662	4.40e-23	102
MS.gene45454.t1	MTR_5g083030	25.833	360	190	12	11	342	297	607	1.61e-20	94.7
MS.gene45454.t1	MTR_1g094215	28.446	341	183	13	11	339	68	359	9.24e-20	91.7
MS.gene45454.t1	MTR_1g094215	28.446	341	183	13	11	339	251	542	2.72e-19	90.9
MS.gene45454.t1	MTR_3g078160	25.481	416	263	13	11	418	279	655	2.86e-19	90.9
MS.gene45454.t1	MTR_3g078160	25.481	416	263	13	11	418	279	655	3.32e-19	90.9
MS.gene45454.t1	MTR_3g085610	25.110	454	276	17	13	427	286	714	1.07e-18	89.4
MS.gene45454.t1	MTR_5g034440	27.371	369	233	13	11	375	284	621	2.48e-18	88.2
MS.gene45454.t1	MTR_8g080280	27.617	449	253	22	13	418	288	707	5.09e-18	87.0
MS.gene45454.t1	MTR_4g028960	35.673	171	76	8	2	151	273	430	5.47e-17	84.0
MS.gene45454.t1	MTR_4g091880	26.341	410	247	13	11	418	9	365	8.46e-17	82.0
MS.gene45454.t1	MTR_7g097020	45.679	81	37	2	5	85	239	312	8.41e-16	80.5
MS.gene45454.t1	MTR_7g053260	42.500	80	39	2	1	80	72	144	9.90e-16	79.3
MS.gene45454.t1	MTR_7g116600	45.745	94	40	4	11	104	82	164	1.08e-15	79.3
MS.gene45454.t1	MTR_1g069845	45.455	77	35	2	5	81	122	191	3.22e-15	78.2
MS.gene45454.t1	MTR_3g115670	26.047	215	117	7	11	207	34	224	5.09e-15	77.8
MS.gene45454.t1	MTR_1g069845	45.455	77	35	2	5	81	243	312	5.42e-15	77.8
MS.gene45454.t1	MTR_1g069845	45.455	77	35	2	5	81	239	308	5.64e-15	77.8
MS.gene45454.t1	MTR_1g017770	50.667	75	30	2	6	80	44	111	6.90e-15	76.6
MS.gene45454.t1	MTR_4g091880	24.390	410	227	13	11	418	9	337	1.09e-14	75.5
MS.gene45454.t1	MTR_2g011140	25.776	322	187	10	13	330	21	294	1.55e-14	75.5
MS.gene45454.t1	MTR_3g078160	26.117	291	180	9	11	299	279	536	1.58e-14	75.9
MS.gene45454.t1	MTR_8g077205	44.086	93	39	4	5	95	159	240	1.59e-14	76.3
MS.gene45454.t1	MTR_8g077205	44.086	93	39	4	5	95	271	352	2.15e-14	75.9
MS.gene45454.t1	MTR_5g020570	42.857	98	41	6	1	95	265	350	2.05e-13	72.8
MS.gene45454.t1	MTR_5g020570	42.857	98	41	6	1	95	280	365	2.44e-13	72.8
MS.gene45454.t1	MTR_8g103227	39.326	89	40	3	11	99	399	473	6.34e-13	71.6
MS.gene45454.t1	MTR_3g466220	41.667	84	42	2	2	85	228	304	1.03e-12	70.9
MS.gene45454.t1	MTR_3g466220	41.667	84	42	2	2	85	207	283	1.13e-12	70.5
MS.gene45454.t1	MTR_1g079450	39.560	91	44	4	5	95	61	140	1.68e-12	69.3
MS.gene45454.t1	MTR_1g090320	43.243	74	36	2	11	84	517	584	1.81e-12	70.1
MS.gene45454.t1	MTR_1g090320	43.243	74	36	2	11	84	519	586	1.83e-12	70.1
MS.gene45454.t1	MTR_7g117890	41.667	84	42	2	2	85	250	326	8.12e-12	67.8

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene45454.t1	AT3G52450	53.829	444	189	6	1	438	1	434	3.91e-157	451
MS.gene45454.t1	AT2G35930	50.679	442	177	5	1	438	6	410	1.33e-153	442
MS.gene45454.t1	AT3G11840	35.381	472	233	12	3	435	6	444	1.72e-78	251
MS.gene45454.t1	AT3G19380	33.179	431	242	9	1	423	8	400	9.19e-50	174
MS.gene45454.t1	AT5G37490	30.805	435	252	14	4	429	28	422	1.48e-48	172
MS.gene45454.t1	AT1G66160	29.812	426	242	14	4	421	30	406	1.19e-43	158
MS.gene45454.t1	AT1G49780	31.151	443	258	11	1	432	8	414	1.62e-43	158
MS.gene45454.t1	AT1G66160	27.230	426	237	15	4	421	30	390	5.59e-31	123
MS.gene45454.t1	AT5G09800	28.989	445	255	15	5	431	8	409	1.72e-28	116
MS.gene45454.t1	AT1G23030	26.794	418	248	14	11	422	245	610	3.85e-28	117
MS.gene45454.t1	AT2G28830	27.045	440	246	18	2	421	178	562	4.60e-27	114
MS.gene45454.t1	AT3G18710	26.637	443	272	12	5	431	10	415	8.15e-27	112
MS.gene45454.t1	AT5G42340	29.392	296	166	8	11	306	294	546	2.64e-24	106
MS.gene45454.t1	AT5G64660	27.333	450	267	13	5	431	8	420	5.70e-24	103
MS.gene45454.t1	AT1G71020	26.995	426	246	14	11	422	99	473	8.29e-24	103
MS.gene45454.t1	AT3G46510	26.651	424	263	17	2	421	250	629	8.58e-24	104
MS.gene45454.t1	AT1G71020	26.995	426	246	14	11	422	247	621	1.04e-23	104
MS.gene45454.t1	AT3G54850	28.173	323	163	12	11	316	252	522	1.55e-22	100
MS.gene45454.t1	AT3G49810	24.764	424	271	9	6	429	63	438	1.59e-22	99.8
MS.gene45454.t1	AT5G65920	24.645	422	268	13	6	426	59	431	8.26e-22	97.8
MS.gene45454.t1	AT5G65920	24.645	422	268	13	6	426	59	431	8.26e-22	97.8
MS.gene45454.t1	AT1G67530	26.549	452	261	14	13	418	278	704	2.66e-20	94.4
MS.gene45454.t1	AT1G67530	26.549	452	261	14	13	418	278	704	2.66e-20	94.4
MS.gene45454.t1	AT1G67530	26.549	452	261	14	13	418	278	704	2.66e-20	94.4
MS.gene45454.t1	AT1G29340	27.554	323	178	9	5	313	303	583	6.24e-20	93.2
MS.gene45454.t1	AT5G01830	26.752	314	176	11	4	308	271	539	4.58e-18	87.4
MS.gene45454.t1	AT1G10560	26.582	316	177	11	11	313	292	565	1.04e-17	86.3
MS.gene45454.t1	AT1G67530	48.352	91	35	4	13	103	278	356	1.84e-17	85.1
MS.gene45454.t1	AT1G24330	25.450	444	272	17	13	418	281	703	2.66e-17	85.1
MS.gene45454.t1	AT1G24330	25.450	444	272	17	13	418	281	703	2.66e-17	85.1
MS.gene45454.t1	AT1G27910	48.235	85	33	4	13	97	285	358	2.87e-16	81.6
MS.gene45454.t1	AT4G21350	24.505	404	251	12	11	412	9	360	4.09e-15	77.0
MS.gene45454.t1	AT3G07360	48.000	75	32	2	11	85	78	145	2.23e-14	75.5
MS.gene45454.t1	AT3G54790	43.750	80	38	2	5	84	200	272	8.58e-14	73.9
MS.gene45454.t1	AT3G02840	24.857	350	216	10	83	417	34	351	1.07e-13	72.8
MS.gene45454.t1	AT3G54790	42.683	82	40	2	3	84	234	308	1.09e-13	73.9
MS.gene45454.t1	AT3G54790	42.683	82	40	2	3	84	234	308	1.09e-13	73.9
MS.gene45454.t1	AT1G60190	24.167	360	208	12	13	354	284	596	1.49e-13	73.2
MS.gene45454.t1	AT2G23140	38.776	98	49	3	11	108	237	323	2.70e-13	72.4
MS.gene45454.t1	AT2G23140	38.776	98	49	3	11	108	234	320	2.72e-13	72.4
MS.gene45454.t1	AT2G23140	38.776	98	49	3	11	108	234	320	2.72e-13	72.4
MS.gene45454.t1	AT2G23140	38.776	98	49	3	11	108	45	131	2.98e-13	72.4
MS.gene45454.t1	AT2G23140	38.776	98	49	3	11	108	45	131	2.98e-13	72.4
MS.gene45454.t1	AT1G01660	40.000	75	38	2	11	85	502	569	6.92e-12	67.8
MS.gene45454.t1	AT1G01660	40.000	75	38	2	11	85	501	568	7.35e-12	67.8
MS.gene45454.t1	AT5G67340	32.283	127	74	4	5	128	238	355	1.61e-11	67.0
MS.gene45454.t1	AT5G67340	32.283	127	74	4	5	128	238	355	1.61e-11	67.0
MS.gene45454.t1	AT1G01680	40.260	77	39	2	11	87	237	306	1.70e-11	65.5
MS.gene45454.t1	AT2G45920	40.244	82	42	2	6	87	324	398	3.39e-11	65.1

Find 49 sgRNAs with CRISPR-Local

Find 68 sgRNAs with CRISPR-GE

CRISPR-Local

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAGAATCAGAAGCTTCTTTA+AGG	0.127606	1.2:+44803830	None:intergenic
TTGTTTCAAAGAAGATTCTT+AGG	0.216095	1.2:-44803099	MS.gene45454:CDS
TTAATTCAACTCGTTGAATT+AGG	0.246155	1.2:-44803292	MS.gene45454:CDS
TCAAGTTGATAGTGGAAATA+AGG	0.246468	1.2:-44802951	MS.gene45454:CDS
TTCATGAGTTGTAGTGAAAT+AGG	0.280796	1.2:+44804111	None:intergenic
TGCACCATGAATTCTTCTTA+TGG	0.299615	1.2:-44803910	MS.gene45454:CDS
TATGAAGCAAGTAAATTAAA+AGG	0.308972	1.2:+44802863	None:intergenic
TTAATGAGATTATTGCAAAA+AGG	0.315692	1.2:-44803478	MS.gene45454:CDS
AAAGCCATGTGAGATGATTT+TGG	0.361012	1.2:-44803194	MS.gene45454:CDS
GTGGTGTAACTTCGATATCT+TGG	0.376999	1.2:+44804145	None:intergenic
ATTCAAGAAATGTTACGAAT+TGG	0.378143	1.2:-44803001	MS.gene45454:CDS
TTAAATTGCATTCAAAGTCT+TGG	0.383883	1.2:-44802904	MS.gene45454:CDS
ATGCCTGTTGAGACAGTAAC+TGG	0.387709	1.2:+44804084	None:intergenic
GATTCCATAAGAAGAATTCA+TGG	0.398042	1.2:+44803906	None:intergenic
AGAGTAAAAGCAATTGAATC+AGG	0.420580	1.2:-44803262	MS.gene45454:CDS
TTGATGCTTTCTTTGATACC+TGG	0.423430	1.2:+44803332	None:intergenic
TGTTGTTGCAAAGCTTTGTT+TGG	0.427050	1.2:-44802978	MS.gene45454:CDS
TCATGAGTTGTAGTGAAATA+GGG	0.428583	1.2:+44804112	None:intergenic
TTTGATGATGATGATGTTGA+AGG	0.466030	1.2:-44803625	MS.gene45454:CDS
GATCCAGTTACTGTCTCAAC+AGG	0.466859	1.2:-44804087	MS.gene45454:CDS
TGTTTCAAAGAAGATTCTTA+GGG	0.470575	1.2:-44803098	MS.gene45454:CDS
AATTCATGGTGCACCATGCT+TGG	0.475436	1.2:+44803920	None:intergenic
TTGGTTCTTCAAGTTGATAG+TGG	0.510674	1.2:-44802959	MS.gene45454:CDS
AGTCTACGAAGAGTGTGGTT+TGG	0.516469	1.2:+44803946	None:intergenic
AGATTTGAACTTCTAAGCCA+TGG	0.528702	1.2:-44803136	MS.gene45454:CDS
ATGTTATGTCAATGTGCTGA+TGG	0.528834	1.2:-44803160	MS.gene45454:CDS
TTGCTTCATACCCAACAAGT+TGG	0.536228	1.2:-44802850	MS.gene45454:CDS
AGGGTTTGGATAAGTAAATG+AGG	0.542957	1.2:+44803799	None:intergenic
AAATCGACGGTGTATCGAAT+CGG	0.545134	1.2:-44803740	MS.gene45454:CDS
GATTCTTAGGGTTTCAACAA+TGG	0.555489	1.2:-44803086	MS.gene45454:CDS
GAACTTCTAAGCCATGGATG+TGG	0.556866	1.2:-44803130	MS.gene45454:CDS
ATAAGGCAAAGGAGAAAGCA+AGG	0.557452	1.2:-44802934	MS.gene45454:CDS
CTGATAATTGAAGATTGTAA+AGG	0.558747	1.2:+44803554	None:intergenic
ATTCTTCTTATGGAATCGAA+AGG	0.560631	1.2:-44803900	MS.gene45454:CDS
TTCGATGCTTTCTCTGTCGT+AGG	0.572900	1.2:+44804059	None:intergenic
TATTTCACTACAACTCATGA+AGG	0.582520	1.2:-44804109	MS.gene45454:CDS
TGATAGTGGAAATAAGGCAA+AGG	0.584798	1.2:-44802945	MS.gene45454:CDS
CGACGGTGTATCGAATCGGC+CGG	0.591346	1.2:-44803736	MS.gene45454:CDS
TGCTAAGAACTCAACAGCGC+CGG	0.596748	1.2:+44803717	None:intergenic
AATCTTCAATTATCAGAACA+AGG	0.603602	1.2:-44803547	MS.gene45454:CDS
AGTTCAACTTCTCAAAGACC+AGG	0.618510	1.2:-44803350	MS.gene45454:CDS
CAATAGCTAAACCACATCCA+TGG	0.618916	1.2:+44803119	None:intergenic
TTCGTAGACTCATCCAAGCA+TGG	0.622209	1.2:-44803933	MS.gene45454:CDS
CCGTCGATTTGACTCACTCT+CGG	0.622821	1.2:+44803753	None:intergenic
TAAGGCAAAGGAGAAAGCAA+GGG	0.629025	1.2:-44802933	MS.gene45454:CDS
GGATGAGTCTACGAAGAGTG+TGG	0.646535	1.2:+44803941	None:intergenic
AGCACCAAAATCATCTCACA+TGG	0.654659	1.2:+44803190	None:intergenic
CCGAGAGTGAGTCAAATCGA+CGG	0.693824	1.2:-44803753	MS.gene45454:CDS
TGGCTAATGATAGAGCTGTG+AGG	0.767301	1.2:-44803066	MS.gene45454:CDS

CRISPR-GE

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
!!	TATGAAGCAAGTAAATTAAA+AGG	+	chr1.2:44804137-44804156	None:intergenic	20.0%
!!	TTAATGAGATTATTGCAAAA+AGG	-	chr1.2:44803519-44803538	MS.gene45454:CDS	20.0%
!!!	AATTGTTTTGAGCTTTTTTA+GGG	+	chr1.2:44803220-44803239	None:intergenic	20.0%
!	AATCTTCAATTATCAGAACA+AGG	-	chr1.2:44803450-44803469	MS.gene45454:CDS	25.0%
!	ACTCTCTTAAACTTCAAAAA+TGG	-	chr1.2:44803480-44803499	MS.gene45454:CDS	25.0%
!	ATTCAAGAAATGTTACGAAT+TGG	-	chr1.2:44803996-44804015	MS.gene45454:CDS	25.0%
!	CTGATAATTGAAGATTGTAA+AGG	+	chr1.2:44803446-44803465	None:intergenic	25.0%
!	TGTTTCAAAGAAGATTCTTA+GGG	-	chr1.2:44803899-44803918	MS.gene45454:CDS	25.0%
!	TTAAATTGCATTCAAAGTCT+TGG	-	chr1.2:44804093-44804112	MS.gene45454:CDS	25.0%
!	TTAATTCAACTCGTTGAATT+AGG	-	chr1.2:44803705-44803724	MS.gene45454:CDS	25.0%
!	TTGTTTCAAAGAAGATTCTT+AGG	-	chr1.2:44803898-44803917	MS.gene45454:CDS	25.0%
!!!	CAATTGTTTTGAGCTTTTTT+AGG	+	chr1.2:44803221-44803240	None:intergenic	25.0%
!!!	TTTAGATTTGCTAGTTTTGA+TGG	+	chr1.2:44803606-44803625	None:intergenic	25.0%
!!!	TTTGCTTTTGACTTCAAAAT+AGG	-	chr1.2:44803396-44803415	MS.gene45454:CDS	25.0%
	AAGAATCAGAAGCTTCTTTA+AGG	+	chr1.2:44803170-44803189	None:intergenic	30.0%
	AGAGTAAAAGCAATTGAATC+AGG	-	chr1.2:44803735-44803754	MS.gene45454:CDS	30.0%
	ATTCTTCTTATGGAATCGAA+AGG	-	chr1.2:44803097-44803116	MS.gene45454:CDS	30.0%
	GATTCCATAAGAAGAATTCA+TGG	+	chr1.2:44803094-44803113	None:intergenic	30.0%
	TATTTCACTACAACTCATGA+AGG	-	chr1.2:44802888-44802907	MS.gene45454:CDS	30.0%
	TCATGAGTTGTAGTGAAATA+GGG	+	chr1.2:44802888-44802907	None:intergenic	30.0%
	TTCATGAGTTGTAGTGAAAT+AGG	+	chr1.2:44802889-44802908	None:intergenic	30.0%
!!	TCAAGTTGATAGTGGAAATA+AGG	-	chr1.2:44804046-44804065	MS.gene45454:CDS	30.0%
!!	TTTAAGGAGTTTTTCGATGA+GGG	+	chr1.2:44803154-44803173	None:intergenic	30.0%
!!	TTTGATGATGATGATGTTGA+AGG	-	chr1.2:44803372-44803391	MS.gene45454:CDS	30.0%
!!!	TTTTGAGCTTTTTTAGGGTT+TGG	+	chr1.2:44803215-44803234	None:intergenic	30.0%
	AACTAACTCGACGAAAAACT+CGG	+	chr1.2:44803631-44803650	None:intergenic	35.0%
	AGATTTGAACTTCTAAGCCA+TGG	-	chr1.2:44803861-44803880	MS.gene45454:CDS	35.0%
	AGGGTTTGGATAAGTAAATG+AGG	+	chr1.2:44803201-44803220	None:intergenic	35.0%
	ATGTTATGTCAATGTGCTGA+TGG	-	chr1.2:44803837-44803856	MS.gene45454:CDS	35.0%
	GATTCTTAGGGTTTCAACAA+TGG	-	chr1.2:44803911-44803930	MS.gene45454:CDS	35.0%
	TGCACCATGAATTCTTCTTA+TGG	-	chr1.2:44803087-44803106	MS.gene45454:CDS	35.0%
	TTGATGCTTTCTTTGATACC+TGG	+	chr1.2:44803668-44803687	None:intergenic	35.0%
!	AAAGCCATGTGAGATGATTT+TGG	-	chr1.2:44803803-44803822	MS.gene45454:CDS	35.0%
!	CGAAAAATGGCTCTTTTCAT+CGG	-	chr1.2:44802957-44802976	MS.gene45454:CDS	35.0%
!!	ACAGAGAAAGCATCGAAAAA+TGG	-	chr1.2:44802944-44802963	MS.gene45454:CDS	35.0%
!!	CTTTAAGGAGTTTTTCGATG+AGG	+	chr1.2:44803155-44803174	None:intergenic	35.0%
!!	TGATAGTGGAAATAAGGCAA+AGG	-	chr1.2:44804052-44804071	MS.gene45454:CDS	35.0%
!!	TGTTGTTGCAAAGCTTTGTT+TGG	-	chr1.2:44804019-44804038	MS.gene45454:CDS	35.0%
!!	TTGGTTCTTCAAGTTGATAG+TGG	-	chr1.2:44804038-44804057	MS.gene45454:CDS	35.0%
!!	TTTTTCGATGAGGGTTTTTG+TGG	+	chr1.2:44803145-44803164	None:intergenic	35.0%
!!!	TGAGATGATTTTGGTGCTTT+TGG	-	chr1.2:44803812-44803831	MS.gene45454:CDS	35.0%
	AAATCGACGGTGTATCGAAT+CGG	-	chr1.2:44803257-44803276	MS.gene45454:CDS	40.0%
	AGCACCAAAATCATCTCACA+TGG	+	chr1.2:44803810-44803829	None:intergenic	40.0%
	AGTTCAACTTCTCAAAGACC+AGG	-	chr1.2:44803647-44803666	MS.gene45454:CDS	40.0%
	ATAAGGCAAAGGAGAAAGCA+AGG	-	chr1.2:44804063-44804082	MS.gene45454:CDS	40.0%
	CAATAGCTAAACCACATCCA+TGG	+	chr1.2:44803881-44803900	None:intergenic	40.0%
	GAAATAGGGCACAGAAAAAG+TGG	+	chr1.2:44802874-44802893	None:intergenic	40.0%
	GTGGTGTAACTTCGATATCT+TGG	+	chr1.2:44802855-44802874	None:intergenic	40.0%
	TAAGGCAAAGGAGAAAGCAA+GGG	-	chr1.2:44804064-44804083	MS.gene45454:CDS	40.0%
	TTGCTTCATACCCAACAAGT+TGG	-	chr1.2:44804147-44804166	MS.gene45454:CDS	40.0%
!	GTTTTTGTGGTTGGAGGTTT+TGG	+	chr1.2:44803132-44803151	None:intergenic	40.0%
!!!	GTGAGTTGTTGTTTTGTGAC+AGG	+	chr1.2:44802997-44803016	None:intergenic	40.0%
	AATTCATGGTGCACCATGCT+TGG	+	chr1.2:44803080-44803099	None:intergenic	45.0%
	ATGCCTGTTGAGACAGTAAC+TGG	+	chr1.2:44802916-44802935	None:intergenic	45.0%
	GAACTTCTAAGCCATGGATG+TGG	-	chr1.2:44803867-44803886	MS.gene45454:CDS	45.0%
	GATCCAGTTACTGTCTCAAC+AGG	-	chr1.2:44802910-44802929	MS.gene45454:CDS	45.0%
	TGGCTAATGATAGAGCTGTG+AGG	-	chr1.2:44803931-44803950	MS.gene45454:CDS	45.0%
	TTCGATGCTTTCTCTGTCGT+AGG	+	chr1.2:44802941-44802960	None:intergenic	45.0%
	TTCGTAGACTCATCCAAGCA+TGG	-	chr1.2:44803064-44803083	MS.gene45454:CDS	45.0%
!	AGTCTACGAAGAGTGTGGTT+TGG	+	chr1.2:44803054-44803073	None:intergenic	45.0%
!	ATGAGGGTTTTTGTGGTTGG+AGG	+	chr1.2:44803138-44803157	None:intergenic	45.0%
!	TCGATGAGGGTTTTTGTGGT+TGG	+	chr1.2:44803141-44803160	None:intergenic	45.0%
	CCGAGAGTGAGTCAAATCGA+CGG	-	chr1.2:44803244-44803263	MS.gene45454:CDS	50.0%
	GGATGAGTCTACGAAGAGTG+TGG	+	chr1.2:44803059-44803078	None:intergenic	50.0%
	TGCTAAGAACTCAACAGCGC+CGG	+	chr1.2:44803283-44803302	None:intergenic	50.0%
!!	CCGTCGATTTGACTCACTCT+CGG	+	chr1.2:44803247-44803266	None:intergenic	50.0%
!!!	GTGGTTGGAGGTTTTGGAGT+TGG	+	chr1.2:44803126-44803145	None:intergenic	50.0%
	CGACGGTGTATCGAATCGGC+CGG	-	chr1.2:44803261-44803280	MS.gene45454:CDS	60.0%

Chromosome	Type	Strat	End	Strand	Name
chr1.2	gene	44802847	44804172	44802847	ID=MS.gene45454
chr1.2	mRNA	44802847	44804172	44802847	ID=MS.gene45454.t1;Parent=MS.gene45454
chr1.2	exon	44802847	44804172	44802847	ID=MS.gene45454.t1.exon1;Parent=MS.gene45454.t1
chr1.2	CDS	44802847	44804172	44802847	ID=cds.MS.gene45454.t1;Parent=MS.gene45454.t1

Gene Sequence

>MS.gene45454

ATGAACCAAGATATCGAAGTTACACCACTTTTTCTGTGCCCTATTTCACTACAACTCATGAAGGATCCAGTTACTGTCTCAACAGGCATAACCTACGACAGAGAAAGCATCGAAAAATGGCTCTTTTCATCGGAAAACAAAACATGTCCTGTCACAAAACAACAACTCACACATGATGATGCAAATGATCTCATTATTCTCACTCCAAACCACACTCTTCGTAGACTCATCCAAGCATGGTGCACCATGAATTCTTCTTATGGAATCGAAAGGATTCCAACTCCAAAACCTCCAACCACAAAAACCCTCATCGAAAAACTCCTTAAAGAAGCTTCTGATTCTTCATATTCACCTCATTTACTTATCCAAACCCTAAAAAAGCTCAAAACAATTGCATCCGAGAGTGAGTCAAATCGACGGTGTATCGAATCGGCCGGCGCTGTTGAGTTCTTAGCATCAATAGTAACAAAAAACAACACAAGTTGTTCATCTTCATGTTCAGCAACAGAATTAATAGAAGTTAGCTTTGATGATGATGATGTTGAAGGTTTTGCTTTTGACTTCAAAATAGGTGCAGAAGATGAAGCTATAAACATCCTTTACAATCTTCAATTATCAGAACAAGGTTTGAAAACTCTCTTAAACTTCAAAAATGGAGAATTTTTAGACTCTTTAATGAGATTATTGCAAAAAGGTAACTACGATTCAAGAACATACGCAATCTTTCTGTTGAAATCTATGTCAAAAGTAGCTGATCCATCAAAACTAGCAAATCTAAAGACCGAGTTTTTCGTCGAGTTAGTTCAACTTCTCAAAGACCAGGTATCAAAGAAAGCATCAAAAGCAACACTACAAACGTTAATTCAACTCGTTGAATTAGGAAGAAATAGAGTAAAAGCAATTGAATCAGGTTGTGTTTCTGCTTTGATAGAACTTCTTCTTGATTGCAAAGAAAGAAAGCCATGTGAGATGATTTTGGTGCTTTTGGAGATGTTATGTCAATGTGCTGATGGAAGATTTGAACTTCTAAGCCATGGATGTGGTTTAGCTATTGTTTCAAAGAAGATTCTTAGGGTTTCAACAATGGCTAATGATAGAGCTGTGAGGATTCTTCTATCTGTTTCAAGATTTTCTGCAACACATTTTGTTATTCAAGAAATGTTACGAATTGGTGTTGTTGCAAAGCTTTGTTTGGTTCTTCAAGTTGATAGTGGAAATAAGGCAAAGGAGAAAGCAAGGGAGATTCTTAAATTGCATTCAAAGTCTTGGATGAATTCTCATTGCATACCTTTTAATTTACTTGCTTCATACCCAACAAGTTGGTAA

Protein sequence

>MS.gene45454.t1

MNQDIEVTPLFLCPISLQLMKDPVTVSTGITYDRESIEKWLFSSENKTCPVTKQQLTHDDANDLIILTPNHTLRRLIQAWCTMNSSYGIERIPTPKPPTTKTLIEKLLKEASDSSYSPHLLIQTLKKLKTIASESESNRRCIESAGAVEFLASIVTKNNTSCSSSCSATELIEVSFDDDDVEGFAFDFKIGAEDEAINILYNLQLSEQGLKTLLNFKNGEFLDSLMRLLQKGNYDSRTYAIFLLKSMSKVADPSKLANLKTEFFVELVQLLKDQVSKKASKATLQTLIQLVELGRNRVKAIESGCVSALIELLLDCKERKPCEMILVLLEMLCQCADGRFELLSHGCGLAIVSKKILRVSTMANDRAVRILLSVSRFSATHFVIQEMLRIGVVAKLCLVLQVDSGNKAKEKAREILKLHSKSWMNSHCIPFNLLASYPTSW