AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene034952

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene034952.t1 MTR_1g061690 98.168 546 8 1 1 544 1 546 0.0 1119
MS.gene034952.t1 MTR_4g056390 67.946 521 159 2 12 524 7 527 0.0 757
MS.gene034952.t1 MTR_2g084555 68.550 531 148 5 11 530 7 529 0.0 748
MS.gene034952.t1 MTR_5g024270 53.509 456 154 4 23 477 17 415 1.50e-171 493
MS.gene034952.t1 MTR_8g073250 52.203 454 157 4 23 476 17 410 1.55e-168 485
MS.gene034952.t1 MTR_5g024270 52.480 383 124 4 23 404 17 342 2.16e-134 395
MS.gene034952.t1 MTR_3g076540 38.608 158 90 4 29 186 80 230 5.06e-27 114
MS.gene034952.t1 MTR_3g076540 30.899 178 88 6 317 476 259 419 2.69e-17 84.7
MS.gene034952.t1 MTR_3g076540 38.608 158 90 4 29 186 80 230 7.10e-27 113
MS.gene034952.t1 MTR_3g076540 29.570 186 88 7 317 476 259 427 9.09e-15 77.0
MS.gene034952.t1 MTR_3g109390 36.250 160 95 4 27 186 58 210 9.42e-27 111
MS.gene034952.t1 MTR_3g109390 40.206 97 52 1 317 413 238 328 6.75e-16 79.3
MS.gene034952.t1 MTR_3g109390 36.250 160 95 4 27 186 58 210 1.05e-26 112
MS.gene034952.t1 MTR_3g109390 32.955 176 91 3 317 478 238 400 3.09e-21 96.3
MS.gene034952.t1 MTR_3g109390 36.250 160 95 4 27 186 58 210 1.23e-26 112
MS.gene034952.t1 MTR_3g109390 33.523 176 88 4 317 478 238 398 1.29e-20 94.7
MS.gene034952.t1 MTR_3g109390 36.250 160 95 4 27 186 36 188 1.32e-26 112
MS.gene034952.t1 MTR_3g109390 32.955 176 91 3 317 478 216 378 2.32e-21 96.7
MS.gene034952.t1 MTR_4g104620 37.580 157 91 4 29 185 84 233 2.43e-26 112
MS.gene034952.t1 MTR_4g104620 30.857 175 86 6 317 473 263 420 9.67e-16 80.1
MS.gene034952.t1 MTR_3g076540 39.474 152 85 4 35 186 4 148 6.87e-26 109
MS.gene034952.t1 MTR_3g076540 30.899 178 88 6 317 476 177 337 1.89e-17 84.3
MS.gene034952.t1 MTR_3g086530 32.941 170 104 5 19 185 66 228 1.69e-24 104
MS.gene034952.t1 MTR_3g086530 32.941 170 104 5 19 185 66 228 2.94e-24 105
MS.gene034952.t1 MTR_3g086530 33.654 104 63 1 317 420 260 357 2.70e-13 72.0
MS.gene034952.t1 MTR_3g086530 32.941 170 104 5 19 185 66 228 6.24e-24 104
MS.gene034952.t1 MTR_3g086530 33.654 104 63 1 317 420 260 357 2.46e-13 72.4
MS.gene034952.t1 MTR_4g104620 38.571 140 80 3 46 185 6 139 1.47e-23 102
MS.gene034952.t1 MTR_4g104620 30.857 175 86 6 317 473 169 326 7.98e-16 79.3
MS.gene034952.t1 MTR_8g070930 40.136 147 82 3 41 186 136 277 6.10e-23 103
MS.gene034952.t1 MTR_8g070930 38.333 120 64 3 308 423 273 386 1.33e-15 80.9
MS.gene034952.t1 MTR_3g076540 38.686 137 78 3 50 186 1 131 1.77e-22 99.0
MS.gene034952.t1 MTR_3g076540 30.899 178 88 6 317 476 160 320 1.80e-17 84.0
MS.gene034952.t1 MTR_4g104620 38.235 136 78 3 50 185 1 130 4.03e-22 97.8
MS.gene034952.t1 MTR_4g104620 30.857 175 86 6 317 473 160 317 8.56e-16 79.0
MS.gene034952.t1 MTR_3g109390 37.313 134 78 3 53 186 70 197 1.36e-21 97.4
MS.gene034952.t1 MTR_3g109390 32.955 176 91 3 317 478 225 387 4.22e-21 95.9
MS.gene034952.t1 MTR_3g109390 37.313 134 78 3 53 186 92 219 1.89e-21 97.1
MS.gene034952.t1 MTR_3g109390 32.955 176 91 3 317 478 247 409 8.86e-21 95.1
MS.gene034952.t1 MTR_6g074905 29.213 178 110 5 306 476 996 1164 1.87e-18 89.7
MS.gene034952.t1 MTR_5g082700 29.944 177 110 5 306 476 537 705 7.77e-18 87.4
MS.gene034952.t1 MTR_5g082700 33.548 155 94 3 35 185 394 543 9.70e-15 77.8
MS.gene034952.t1 MTR_3g086530 36.207 116 68 3 70 185 2 111 1.92e-17 83.6
MS.gene034952.t1 MTR_3g086530 33.654 104 63 1 317 420 143 240 1.26e-13 72.4
MS.gene034952.t1 MTR_1g111180 32.500 160 97 5 29 183 661 814 4.45e-17 85.5
MS.gene034952.t1 MTR_1g111180 32.124 193 105 6 308 483 813 996 2.24e-15 80.1
MS.gene034952.t1 MTR_1g111180 32.500 160 97 5 29 183 662 815 4.49e-17 85.5
MS.gene034952.t1 MTR_1g111180 32.124 193 105 6 308 483 814 997 2.18e-15 80.1
MS.gene034952.t1 MTR_0349s0030 29.609 179 110 5 306 477 116 285 9.62e-17 81.3
MS.gene034952.t1 MTR_5g082700 33.548 155 94 3 35 185 394 543 7.30e-15 77.8
MS.gene034952.t1 MTR_5g082700 33.548 155 94 3 35 185 394 543 1.05e-14 77.4
MS.gene034952.t1 MTR_5g082700 31.200 125 78 3 306 428 537 655 4.20e-12 69.3
MS.gene034952.t1 MTR_3g086530 33.333 105 64 1 316 420 87 185 4.07e-14 72.8
MS.gene034952.t1 MTR_6g074870 30.973 113 70 2 306 416 227 333 3.35e-12 68.6
MS.gene034952.t1 MTR_4g117490 34.254 181 92 9 306 477 155 317 4.02e-12 69.3
MS.gene034952.t1 MTR_4g087620 32.292 192 107 9 289 476 168 340 9.21e-12 67.4
MS.gene034952.t1 MTR_6g074750 39.130 69 40 1 306 372 45 113 1.07e-11 62.4
MS.gene034952.t1 MTR_4g117490 34.254 181 92 9 306 477 155 317 4.02e-11 65.9
MS.gene034952.t1 MTR_8g028720 33.898 177 87 9 308 476 169 323 5.36e-11 64.7
MS.gene034952.t1 MTR_8g098845 28.870 239 132 9 289 521 165 371 7.00e-11 64.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene034952.t1 AT3G53030 72.180 532 125 6 10 535 8 522 0.0 783
MS.gene034952.t1 AT3G44850 69.392 526 145 5 9 524 10 529 0.0 753
MS.gene034952.t1 AT5G22840 69.884 518 143 4 10 524 11 518 0.0 751
MS.gene034952.t1 AT4G35500 53.304 454 158 4 25 478 19 418 5.15e-172 493
MS.gene034952.t1 AT2G17530 51.101 454 167 3 25 478 19 417 1.92e-163 472
MS.gene034952.t1 AT2G17530 51.101 454 167 3 25 478 19 417 1.92e-163 472
MS.gene034952.t1 AT4G35500 51.209 455 167 4 25 478 19 419 1.13e-162 470
MS.gene034952.t1 AT2G17530 49.868 379 135 3 25 403 19 342 2.52e-124 369
MS.gene034952.t1 AT4G24740 37.209 172 100 5 29 200 84 247 3.56e-28 115
MS.gene034952.t1 AT4G24740 37.209 172 100 5 29 200 84 247 5.28e-28 115
MS.gene034952.t1 AT4G24740 35.833 120 70 2 284 403 231 343 2.16e-14 75.1
MS.gene034952.t1 AT4G24740 37.209 172 100 5 29 200 46 209 8.50e-28 115
MS.gene034952.t1 AT4G24740 29.858 211 112 7 284 476 193 385 8.43e-18 85.9
MS.gene034952.t1 AT4G24740 37.209 172 100 5 29 200 84 247 1.13e-27 115
MS.gene034952.t1 AT4G24740 29.858 211 112 7 284 476 231 423 8.59e-18 86.3
MS.gene034952.t1 AT4G32660 35.625 160 96 4 27 186 55 207 2.44e-26 110
MS.gene034952.t1 AT4G32660 42.574 101 51 3 317 416 235 329 2.50e-15 78.2
MS.gene034952.t1 AT4G32660 35.625 160 96 3 27 186 47 199 3.37e-26 110
MS.gene034952.t1 AT4G32660 34.706 170 93 5 317 476 227 388 8.33e-18 85.9
MS.gene034952.t1 AT4G32660 35.625 160 96 3 27 186 55 207 3.68e-26 110
MS.gene034952.t1 AT4G32660 34.706 170 93 5 317 476 235 396 8.57e-18 85.9
MS.gene034952.t1 AT3G53570 36.471 170 98 5 20 186 89 251 6.74e-26 111
MS.gene034952.t1 AT3G53570 31.844 179 88 5 316 476 281 443 1.38e-17 85.9
MS.gene034952.t1 AT3G53570 36.471 170 98 5 20 186 89 251 6.74e-26 111
MS.gene034952.t1 AT3G53570 31.844 179 88 5 316 476 281 443 1.38e-17 85.9
MS.gene034952.t1 AT3G53570 36.471 170 98 5 20 186 89 251 6.74e-26 111
MS.gene034952.t1 AT3G53570 31.844 179 88 5 316 476 281 443 1.38e-17 85.9
MS.gene034952.t1 AT3G53570 36.471 170 98 5 20 186 75 237 7.31e-26 110
MS.gene034952.t1 AT3G53570 31.844 179 88 5 316 476 267 429 1.59e-17 85.9
MS.gene034952.t1 AT3G53570 36.471 170 98 5 20 186 75 237 7.31e-26 110
MS.gene034952.t1 AT3G53570 31.844 179 88 5 316 476 267 429 1.59e-17 85.9
MS.gene034952.t1 AT4G24740 37.748 151 87 4 50 200 1 144 1.46e-24 103
MS.gene034952.t1 AT4G24740 35.833 120 70 2 284 403 128 240 1.14e-14 74.3
MS.gene034952.t1 AT4G24740 37.748 151 87 4 50 200 1 144 3.28e-24 103
MS.gene034952.t1 AT4G24740 29.858 211 112 7 284 476 128 320 6.44e-18 85.5
MS.gene034952.t1 AT4G24740 37.748 151 87 4 50 200 1 144 3.28e-24 103
MS.gene034952.t1 AT4G24740 29.858 211 112 7 284 476 128 320 6.44e-18 85.5
MS.gene034952.t1 AT4G24740 37.748 151 87 4 50 200 1 144 3.28e-24 103
MS.gene034952.t1 AT4G24740 29.858 211 112 7 284 476 128 320 6.44e-18 85.5
MS.gene034952.t1 AT5G35980 40.000 150 84 3 43 191 121 265 4.73e-24 107
MS.gene034952.t1 AT5G35980 38.525 122 65 4 306 423 253 368 3.24e-15 79.7
MS.gene034952.t1 AT5G35980 38.415 164 91 4 33 191 72 230 5.00e-24 107
MS.gene034952.t1 AT5G35980 38.525 122 65 4 306 423 218 333 4.35e-15 79.0
MS.gene034952.t1 AT5G35980 38.415 164 91 4 33 191 107 265 8.50e-24 106
MS.gene034952.t1 AT5G35980 38.525 122 65 4 306 423 253 368 4.27e-15 79.0
MS.gene034952.t1 AT1G73460 30.726 179 108 5 306 477 992 1161 6.71e-21 97.8
MS.gene034952.t1 AT1G73460 32.886 149 91 3 41 185 855 998 3.69e-13 73.2
MS.gene034952.t1 AT1G73460 30.726 179 108 5 306 477 992 1161 6.71e-21 97.8
MS.gene034952.t1 AT1G73460 32.886 149 91 3 41 185 855 998 3.69e-13 73.2
MS.gene034952.t1 AT1G73450 30.726 179 108 5 306 477 975 1144 7.88e-21 97.4
MS.gene034952.t1 AT1G73450 32.886 149 91 3 41 185 838 981 4.04e-13 72.8
MS.gene034952.t1 AT4G24740 30.000 210 111 7 284 475 25 216 4.10e-19 86.7
MS.gene034952.t1 AT4G24740 30.000 210 111 7 284 475 25 216 4.10e-19 86.7
MS.gene034952.t1 AT2G40120 31.073 177 110 5 306 477 395 564 8.35e-19 90.1
MS.gene034952.t1 AT2G40120 33.548 155 94 3 35 185 252 401 1.35e-14 77.0
MS.gene034952.t1 AT4G32660 34.706 170 93 5 317 476 123 284 4.34e-18 85.5
MS.gene034952.t1 AT4G32660 36.364 99 57 2 88 186 3 95 7.58e-14 72.8
MS.gene034952.t1 AT3G17750 29.545 176 112 4 306 476 961 1129 8.03e-18 87.8
MS.gene034952.t1 AT3G17750 32.500 160 97 4 30 185 815 967 7.19e-14 75.5
MS.gene034952.t1 AT3G25840 31.250 160 99 5 29 183 603 756 3.32e-15 79.3
MS.gene034952.t1 AT3G25840 32.571 175 97 5 317 476 764 932 4.46e-14 75.9
MS.gene034952.t1 AT3G53640 33.146 178 93 7 317 476 470 639 4.11e-15 79.0
MS.gene034952.t1 AT3G53640 30.625 160 100 5 29 183 309 462 5.25e-13 72.0
MS.gene034952.t1 AT1G13350 30.625 160 100 5 29 183 428 581 6.03e-15 78.6
MS.gene034952.t1 AT1G13350 30.682 176 100 5 317 476 589 758 1.96e-14 77.0
MS.gene034952.t1 AT3G25840 31.250 160 99 5 29 183 341 494 7.82e-15 78.2
MS.gene034952.t1 AT3G25840 32.571 175 97 5 317 476 502 670 4.90e-14 75.5
MS.gene034952.t1 AT1G13350 30.625 160 100 5 29 183 455 608 8.59e-15 78.2
MS.gene034952.t1 AT1G13350 30.682 176 100 5 317 476 616 785 2.93e-14 76.3
MS.gene034952.t1 AT1G13350 30.625 160 100 5 29 183 501 654 1.54e-14 77.4
MS.gene034952.t1 AT1G13350 30.682 176 100 5 317 476 662 831 4.22e-14 75.9
MS.gene034952.t1 AT1G73670 30.526 190 106 9 306 486 220 392 3.71e-12 69.3
MS.gene034952.t1 AT3G59790 29.333 225 126 9 289 510 173 367 6.82e-12 67.8
MS.gene034952.t1 AT2G30980 31.148 183 101 8 315 494 211 371 4.87e-11 65.5

Find 138 sgRNAs with CRISPR-Local

Find 414 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTCCATAAGCACTTTATTTA+AGG 0.062791 1.3:-44497167 None:intergenic
AGAGATATGCTTTCATATTT+TGG 0.133189 1.3:+44493239 MS.gene034952:CDS
CATCTTTGTCCTTGTTCTTC+TGG 0.137125 1.3:-44497384 None:intergenic
CGGGATTTCTTCAATAGATA+TGG 0.256557 1.3:+44497109 MS.gene034952:CDS
GCCCTTAAATAAAGTGCTTA+TGG 0.273324 1.3:+44497165 MS.gene034952:CDS
GAATGTAGGTCCCCGTCTTT+TGG 0.274592 1.3:+44497306 MS.gene034952:CDS
GCATTAATGATGGAACTTCT+TGG 0.282888 1.3:+44496965 MS.gene034952:CDS
TATACTTAATAAGAGTTAAT+AGG 0.290620 1.3:-44493182 None:intergenic
TCTCCACTGTTTGGCTCGCT+TGG 0.295410 1.3:+44491947 MS.gene034952:CDS
CCTTGGAATACTTTCTTTGA+TGG 0.309821 1.3:-44497478 None:intergenic
TTAGACCATTTCAAGCATTC+TGG 0.313545 1.3:+44493111 MS.gene034952:CDS
TCCATAAGCACTTTATTTAA+GGG 0.317347 1.3:-44497166 None:intergenic
ATTCTACATCTGCGGATCTT+TGG 0.322906 1.3:+44493835 MS.gene034952:CDS
TCACGGATTGCCTATCAATA+TGG 0.323581 1.3:+44493212 MS.gene034952:CDS
TTGACTTTGGTAATGCTTGC+TGG 0.327850 1.3:+44493739 MS.gene034952:CDS
ATAGTCTTGTCTTTACTGTT+AGG 0.332521 1.3:-44493390 None:intergenic
CGTTCAGAGCAAGCTTGGTT+GGG 0.339812 1.3:+44491918 MS.gene034952:CDS
GGGGTCATTTCTCCACTGTT+TGG 0.341167 1.3:+44491938 MS.gene034952:CDS
ATATCCGTCGGCTGCGATTC+TGG 0.344849 1.3:+44497143 MS.gene034952:CDS
CTCCACTGTTTGGCTCGCTT+GGG 0.347766 1.3:+44491948 MS.gene034952:CDS
ATCTTCTGTGCCTTCGTCTT+CGG 0.358366 1.3:-44491833 None:intergenic
AAGAGGAGCACCAGATTTCC+TGG 0.363522 1.3:-44493361 None:intergenic
GAGGCCATGGAGGCTGGAAT+TGG 0.365219 1.3:+44497412 MS.gene034952:CDS
ATCAACAATTGATCCGTCTA+AGG 0.368658 1.3:+44493335 MS.gene034952:CDS
ATACAAACATGCTGTCCATT+TGG 0.376683 1.3:-44493135 None:intergenic
ATAGTGGTGACAACTTTGAT+AGG 0.377741 1.3:+44493913 MS.gene034952:CDS
ATCTCTTTAACCATATTGAT+AGG 0.403343 1.3:-44493222 None:intergenic
GAGAGGGAGGCCATGGAGGC+TGG 0.404591 1.3:+44497406 MS.gene034952:CDS
TGATTAGAAGACGGCATTGA+TGG 0.409832 1.3:-44497331 None:intergenic
TCTAAGGATCCCAGGAAATC+TGG 0.413304 1.3:+44493351 MS.gene034952:CDS
GGAGGTGAAATCGCTGCTTT+CGG 0.420256 1.3:-44491812 None:intergenic
AAATGGACAGCATGTTTGTA+TGG 0.420622 1.3:+44493137 MS.gene034952:CDS
TTCAAGCATTCTGGTCCAAA+TGG 0.428400 1.3:+44493120 MS.gene034952:CDS
AGAGACACTAAAACATCAAA+TGG 0.428919 1.3:+44493432 MS.gene034952:CDS
CTAGTTCTGCTGGCACTAGT+AGG 0.430061 1.3:+44493610 MS.gene034952:CDS
ACATCCATGAGCTGCTTGCT+TGG 0.434213 1.3:-44493496 None:intergenic
TGAACTACTTGCGGCTGCCT+TGG 0.440976 1.3:-44497495 None:intergenic
TTGGACCAGAATGCTTGAAA+TGG 0.452574 1.3:-44493116 None:intergenic
CGGTGCCCAGAGGTTATCCT+TGG 0.454662 1.3:+44493804 MS.gene034952:CDS
GGCTACCACGCCGTTCGAAT+CGG 0.458904 1.3:+44491868 MS.gene034952:CDS
TCTCTTGCAGAACTTGCATT+CGG 0.467917 1.3:-44493579 None:intergenic
GCATTACACAGAGGCTGCCC+TGG 0.469898 1.3:+44493020 MS.gene034952:CDS
CCGGCTGTAGGTCGTTTCTC+AGG 0.474020 1.3:-44497259 None:intergenic
GAAGTAGCAGTTTCAGCACC+AGG 0.474460 1.3:-44497358 None:intergenic
CATATCTATTGAAGAAATCC+CGG 0.482137 1.3:-44497108 None:intergenic
CAAAGATGAGAGGGAGGCCA+TGG 0.484725 1.3:+44497399 MS.gene034952:CDS
CATTGATGGCTCCAAAAGAC+GGG 0.487038 1.3:-44497317 None:intergenic
TCGTTCAGAGCAAGCTTGGT+TGG 0.487627 1.3:+44491917 MS.gene034952:CDS
AGCTCATGGATGTGCGGAGA+AGG 0.490342 1.3:+44493506 MS.gene034952:CDS
GAAATCGCTGCTTTCGGTGG+TGG 0.490996 1.3:-44491806 None:intergenic
GCAAAATCGTTATCTCATCC+AGG 0.491981 1.3:-44493038 None:intergenic
AAGTGCAAGTTAGTTGACTT+TGG 0.494805 1.3:+44493726 MS.gene034952:CDS
TTTGATCCAAGGATAACCTC+TGG 0.500060 1.3:-44493810 None:intergenic
CGGATGTAGCAGGCATTGAC+CGG 0.500642 1.3:-44497278 None:intergenic
TGGAATGAAGTCAAAAGAGC+AGG 0.504504 1.3:+44493647 MS.gene034952:CDS
AAAGCCAAGCAAGCAGCTCA+TGG 0.505034 1.3:+44493492 MS.gene034952:CDS
GTTCAGAGCAAGCTTGGTTG+GGG 0.505953 1.3:+44491919 MS.gene034952:CDS
CAGTAAAGACAAGACTATGC+TGG 0.508183 1.3:+44493395 MS.gene034952:CDS
AAGAAGAACGAACAGAATGA+TGG 0.508503 1.3:-44491975 None:intergenic
TATAATTCTCAGATCGCACT+AGG 0.509453 1.3:+44497073 MS.gene034952:intron
GAACAAGCTTCTAGTTCTGC+TGG 0.516084 1.3:+44493600 MS.gene034952:CDS
CATTCATCCACGGATGTAGC+AGG 0.517627 1.3:-44497288 None:intergenic
TATGTCGTTCAGAGCAAGCT+TGG 0.518360 1.3:+44491913 MS.gene034952:CDS
GTTTCCAATTCCAGCCTCCA+TGG 0.523041 1.3:-44497416 None:intergenic
TTACTGTTAGGAAGAATAAG+AGG 0.526154 1.3:-44493378 None:intergenic
TTCTGTGCCTTCGTCTTCGG+AGG 0.532445 1.3:-44491830 None:intergenic
GACATAACGACCGGAGCTGA+AGG 0.539436 1.3:-44491896 None:intergenic
AAAGAGCAGGGCAACAGAAG+AGG 0.541507 1.3:+44493660 MS.gene034952:CDS
ATCGGCGATACCTTCAGCTC+CGG 0.545934 1.3:+44491886 MS.gene034952:CDS
GTCAATGCCTGCTACATCCG+TGG 0.547156 1.3:+44497281 MS.gene034952:CDS
GAACAAGGACAAAGATGAGA+GGG 0.551701 1.3:+44497390 MS.gene034952:CDS
GAGAAGGAGGCATCTGAAGA+TGG 0.552642 1.3:+44493522 MS.gene034952:CDS
CTACATCCGTGGATGAATGT+AGG 0.555309 1.3:+44497292 MS.gene034952:CDS
GCATTGATGGCTCCAAAAGA+CGG 0.555544 1.3:-44497318 None:intergenic
GGACCACTTAGCATTAATGA+TGG 0.555688 1.3:+44496955 MS.gene034952:intron
GATTTCCTGGGATCCTTAGA+CGG 0.556902 1.3:-44493348 None:intergenic
GATCAATTGTTGATAAGAGA+AGG 0.558128 1.3:-44493326 None:intergenic
TCAAAGTTGTCACCACTATG+AGG 0.558782 1.3:-44493909 None:intergenic
GTTCCATCATTAATGCTAAG+TGG 0.559588 1.3:-44496958 None:intergenic
ATATCTATTGAAGAAATCCC+GGG 0.566218 1.3:-44497107 None:intergenic
TTGATCCGTCTAAGGATCCC+AGG 0.566867 1.3:+44493343 MS.gene034952:CDS
GTATTATTTGATCCTCATAG+TGG 0.567179 1.3:+44493897 MS.gene034952:CDS
ATTAAGTATAGTGATTATCA+CGG 0.569731 1.3:+44493195 MS.gene034952:CDS
AAGAAATTTATTACCTTCCG+CGG 0.571931 1.3:-44496995 None:intergenic
CACTAGTAGGTTATCAGATG+CGG 0.576983 1.3:+44493623 MS.gene034952:CDS
CAAGGACAAAGATGAGAGGG+AGG 0.580802 1.3:+44497393 MS.gene034952:CDS
TGGGTCAAACAAATGGGTGG+CGG 0.584188 1.3:+44491772 None:intergenic
TCTTGGAATGATGCCGCGGA+AGG 0.584206 1.3:+44496982 MS.gene034952:CDS
CTATCAAGATGAACTACTTG+CGG 0.587404 1.3:-44497504 None:intergenic
TTGATCCAAGGATAACCTCT+GGG 0.587839 1.3:-44493809 None:intergenic
AGAAGAACGAACAGAATGAT+GGG 0.588817 1.3:-44491974 None:intergenic
GAAGGTATCGCCGATTCGAA+CGG 0.589832 1.3:-44491878 None:intergenic
GGTGAAATCGCTGCTTTCGG+TGG 0.592150 1.3:-44491809 None:intergenic
TCATGGATGTGCGGAGAAGG+AGG 0.595831 1.3:+44493509 MS.gene034952:CDS
CCTGAGAAACGACCTACAGC+CGG 0.605154 1.3:+44497259 MS.gene034952:CDS
GATGGTAATCATGAAACCTC+TGG 0.606715 1.3:+44493540 MS.gene034952:CDS
ATAATTCTCAGATCGCACTA+GGG 0.611148 1.3:+44497074 MS.gene034952:intron
AGAGGAGCACCAGATTTCCT+GGG 0.614355 1.3:-44493360 None:intergenic
AGATGATTCTACAGCACCAG+AGG 0.614399 1.3:-44493556 None:intergenic
TAGTGGTGACAACTTTGATA+GGG 0.616977 1.3:+44493914 MS.gene034952:CDS
AAGTAGCAGTTTCAGCACCA+GGG 0.617453 1.3:-44497357 None:intergenic
ATCCCAAGCGAGCCAAACAG+TGG 0.619472 1.3:-44491950 None:intergenic
TTTGATGGAGAATGCATGAG+TGG 0.621786 1.3:-44497463 None:intergenic
CAAAATCGTTATCTCATCCA+GGG 0.625815 1.3:-44493037 None:intergenic
CCGTCTTCTAATCACAACCC+TGG 0.626806 1.3:+44497340 MS.gene034952:CDS
CCATCAAAGAAAGTATTCCA+AGG 0.627091 1.3:+44497478 MS.gene034952:CDS
ATATTCAGACAAGACAGTAT+CGG 0.630386 1.3:+44493784 MS.gene034952:CDS
TACTTCTGACCAGAAGAACA+AGG 0.631653 1.3:+44497375 MS.gene034952:CDS
AGGGCCAGAATCGCAGCCGA+CGG 0.635004 1.3:-44497147 None:intergenic
AGAACAAGGACAAAGATGAG+AGG 0.640119 1.3:+44497389 MS.gene034952:CDS
GCTCTGAACGACATAACGAC+CGG 0.640589 1.3:-44491905 None:intergenic
ATCAAAATATTCTACATCTG+CGG 0.641197 1.3:+44493827 MS.gene034952:CDS
AGATGAGAGGGAGGCCATGG+AGG 0.643015 1.3:+44497402 MS.gene034952:CDS
AACTTCTTGGAATGATGCCG+CGG 0.644175 1.3:+44496978 MS.gene034952:CDS
CCAGGGTTGTGATTAGAAGA+CGG 0.645495 1.3:-44497340 None:intergenic
AGTAGGTTATCAGATGCGGA+TGG 0.646147 1.3:+44493627 MS.gene034952:CDS
CGGGGACCTACATTCATCCA+CGG 0.647503 1.3:-44497298 None:intergenic
GTGATTTGAGACATATCCGT+CGG 0.649441 1.3:+44497131 MS.gene034952:CDS
GTTTCTCAGGAACAAAGTCA+AGG 0.651456 1.3:-44497246 None:intergenic
TAATTCTCAGATCGCACTAG+GGG 0.655674 1.3:+44497075 MS.gene034952:intron
GGAATGAAGTCAAAAGAGCA+GGG 0.655804 1.3:+44493648 MS.gene034952:CDS
GCAAGCAGCTCATGGATGTG+CGG 0.656226 1.3:+44493500 MS.gene034952:CDS
ACAGAAGATTACCGTCGCGG+TGG 0.665098 1.3:+44491847 MS.gene034952:CDS
GAGTTAATAGGTTATCCCCA+AGG 0.667992 1.3:-44493170 None:intergenic
GCAGTTTCTGTCTCACTGTG+CGG 0.668245 1.3:-44493686 None:intergenic
ATTCTCAGATCGCACTAGGG+GGG 0.670913 1.3:+44497077 MS.gene034952:intron
AGCAGGCATTGACCGGCTGT+AGG 0.674560 1.3:-44497271 None:intergenic
AATTCTCAGATCGCACTAGG+GGG 0.677507 1.3:+44497076 MS.gene034952:intron
GATTTCACCTCCGAAGACGA+AGG 0.680908 1.3:+44491823 MS.gene034952:CDS
CGGCGTGGTAGCCACCGCGA+CGG 0.681696 1.3:-44491858 None:intergenic
TGGAGATTTGCAGAGATACG+TGG 0.683349 1.3:+44492972 MS.gene034952:intron
CTTGCACTTGACATCAGCTG+AGG 0.686469 1.3:-44493712 None:intergenic
TGACAACTTTGATAGGGACG+AGG 0.691000 1.3:+44493920 MS.gene034952:CDS
GGCACAGAAGATTACCGTCG+CGG 0.695054 1.3:+44491844 MS.gene034952:CDS
GAGTGCTCAGCATTACACAG+AGG 0.702864 1.3:+44493011 MS.gene034952:CDS
TATCGCCGATTCGAACGGCG+TGG 0.712115 1.3:-44491873 None:intergenic
ATTGATGGCTCCAAAAGACG+GGG 0.727950 1.3:-44497316 None:intergenic
AAGACAGTATCGGTGCCCAG+AGG 0.753096 1.3:+44493794 MS.gene034952:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATATTATTTATGTGTTAAT+AGG + chr1.3:44494014-44494033 MS.gene034952:intron 10.0%
!!! AATTTTAACTATTTATGAAT+TGG + chr1.3:44494315-44494334 MS.gene034952:intron 10.0%
!!! ATAGTTAAAATTATAGTTTT+CGG - chr1.3:44494307-44494326 None:intergenic 10.0%
!!! ATTTTAACTATTTATGAATT+GGG + chr1.3:44494316-44494335 MS.gene034952:intron 10.0%
!!! GTTTTTTTTTTTAATGTTTT+TGG + chr1.3:44492068-44492087 MS.gene034952:intron 10.0%
!! AAATATAAATTCTGTCAAAA+AGG + chr1.3:44494866-44494885 MS.gene034952:intron 15.0%
!! TATACTTAATAAGAGTTAAT+AGG - chr1.3:44493185-44493204 None:intergenic 15.0%
!!! AAAAGATGATTTTTATACTA+CGG + chr1.3:44496453-44496472 MS.gene034952:intron 15.0%
!!! AAAATAATGCTTTGAATTTT+AGG + chr1.3:44492476-44492495 MS.gene034952:intron 15.0%
!!! AAATAATGCTTTGAATTTTA+GGG + chr1.3:44492477-44492496 MS.gene034952:intron 15.0%
!!! AAATGATACTTTGAATTTTA+GGG + chr1.3:44492114-44492133 MS.gene034952:intron 15.0%
!!! AAGATTTTCCTATATAATTA+GGG + chr1.3:44495354-44495373 MS.gene034952:intron 15.0%
!!! GAACTTAAAATGATTTTAAA+AGG - chr1.3:44496432-44496451 None:intergenic 15.0%
!!! TAAATGATACTTTGAATTTT+AGG + chr1.3:44492113-44492132 MS.gene034952:intron 15.0%
!!! TAAGATTTTCCTATATAATT+AGG + chr1.3:44495353-44495372 MS.gene034952:intron 15.0%
!!! TTTTGAAATATGAAATAGAA+GGG - chr1.3:44496130-44496149 None:intergenic 15.0%
!! AAAACCTTCAAAAATTTAGA+CGG - chr1.3:44494123-44494142 None:intergenic 20.0%
!! ACATTTAGTGACAAATATTA+TGG + chr1.3:44496479-44496498 MS.gene034952:intron 20.0%
!! ATTAAGTATAGTGATTATCA+CGG + chr1.3:44493195-44493214 MS.gene034952:CDS 20.0%
!! GTAAAATTTGAACTTACTAA+TGG + chr1.3:44496628-44496647 MS.gene034952:intron 20.0%
!! TGATCATAAATGAAAAGAAA+TGG - chr1.3:44497025-44497044 None:intergenic 20.0%
!!! AAAAAATGAGTTTTAGAAGA+GGG + chr1.3:44494677-44494696 MS.gene034952:intron 20.0%
!!! AAATTATAGTTTTCGGTTAA+CGG - chr1.3:44494300-44494319 None:intergenic 20.0%
!!! AATAGAATACCTTGAATTTT+AGG + chr1.3:44492404-44492423 MS.gene034952:intron 20.0%
!!! ATAGAATACCTTGAATTTTA+GGG + chr1.3:44492405-44492424 MS.gene034952:intron 20.0%
!!! ATTATCTTCCTTTAGTTTAA+CGG + chr1.3:44496301-44496320 MS.gene034952:intron 20.0%
!!! ATTTTTTTTAGCTTATGCAA+AGG - chr1.3:44492344-44492363 None:intergenic 20.0%
!!! CAGTTTTTATCTTTTGTTTT+TGG + chr1.3:44492798-44492817 MS.gene034952:intron 20.0%
!!! CTAAAATCATTCTTTTACAA+AGG + chr1.3:44494897-44494916 MS.gene034952:intron 20.0%
!!! GAGCAATTTAATTTATATCT+AGG + chr1.3:44492450-44492469 MS.gene034952:intron 20.0%
!!! GTAAAAAGAGAAGATTTTTA+GGG - chr1.3:44492002-44492021 None:intergenic 20.0%
!!! GTTTTGAAATATGAAATAGA+AGG - chr1.3:44496131-44496150 None:intergenic 20.0%
!!! TAAAAAATGAGTTTTAGAAG+AGG + chr1.3:44494676-44494695 MS.gene034952:intron 20.0%
!!! TAAAAAGAGAAGATTTTTAG+GGG - chr1.3:44492001-44492020 None:intergenic 20.0%
!!! TGTAAAAAGAGAAGATTTTT+AGG - chr1.3:44492003-44492022 None:intergenic 20.0%
!!! TTATTTTTTTGTTGAGGAAA+TGG + chr1.3:44496705-44496724 MS.gene034952:intron 20.0%
!!! TTGATTTGCATGATATATTT+TGG - chr1.3:44496671-44496690 None:intergenic 20.0%
! AAAAAAAAACTGTCCAAACA+AGG + chr1.3:44496555-44496574 MS.gene034952:intron 25.0%
! AAAAAATCTCAAGAGACAAT+AGG + chr1.3:44494704-44494723 MS.gene034952:intron 25.0%
! AAAACGACTTATAGCTTATA+TGG + chr1.3:44492666-44492685 MS.gene034952:intron 25.0%
! AAAATCCATTTAGAAGAGAA+TGG - chr1.3:44496200-44496219 None:intergenic 25.0%
! AAACCTTCAAAAATTTAGAC+GGG - chr1.3:44494122-44494141 None:intergenic 25.0%
! AAACGACTTATAGCTTATAT+GGG + chr1.3:44492667-44492686 MS.gene034952:intron 25.0%
! AATTGTGAATTGTGAAATTC+TGG - chr1.3:44495927-44495946 None:intergenic 25.0%
! ACATAACAAAAGAATCAACA+TGG - chr1.3:44496823-44496842 None:intergenic 25.0%
! AGTAAGTAGCATTAAAAAAC+AGG - chr1.3:44496743-44496762 None:intergenic 25.0%
! ATAAACAAGAAAACGTGAAA+AGG - chr1.3:44494472-44494491 None:intergenic 25.0%
! ATCAAAATATTCTACATCTG+CGG + chr1.3:44493827-44493846 MS.gene034952:CDS 25.0%
! ATCTCTTTAACCATATTGAT+AGG - chr1.3:44493225-44493244 None:intergenic 25.0%
! ATTCCTTATAGTAAAAAGCA+TGG + chr1.3:44495727-44495746 MS.gene034952:intron 25.0%
! ATTGACTAAATATCATGGAA+TGG + chr1.3:44494340-44494359 MS.gene034952:intron 25.0%
! ATTTCCATGTACTGAAATTA+AGG + chr1.3:44495497-44495516 MS.gene034952:intron 25.0%
! CATAAATGAAAAGAAATGGA+TGG - chr1.3:44497021-44497040 None:intergenic 25.0%
! CTAAAGGAAGATAATAAAGT+TGG - chr1.3:44496296-44496315 None:intergenic 25.0%
! CTGAAAAAAAACACTAGTAT+GGG + chr1.3:44495420-44495439 MS.gene034952:intron 25.0%
! GTCATCTAATAGATAAATTC+AGG - chr1.3:44495123-44495142 None:intergenic 25.0%
! TAGCAATAATGATGTCAATA+GGG + chr1.3:44494958-44494977 MS.gene034952:intron 25.0%
! TATTATTCATAAGCTTGTCA+AGG - chr1.3:44492293-44492312 None:intergenic 25.0%
! TCTAATAGATAAATTCAGGT+AGG - chr1.3:44495119-44495138 None:intergenic 25.0%
! TCTATTAGATGACCTTATTA+TGG + chr1.3:44495130-44495149 MS.gene034952:intron 25.0%
! TCTGAAAAAAAACACTAGTA+TGG + chr1.3:44495419-44495438 MS.gene034952:intron 25.0%
! TTGTCTCATTAACCATAATA+AGG - chr1.3:44495145-44495164 None:intergenic 25.0%
!! AGAGATATGCTTTCATATTT+TGG + chr1.3:44493239-44493258 MS.gene034952:CDS 25.0%
!! AGATGAATGATGCAAATTTT+AGG + chr1.3:44495550-44495569 MS.gene034952:intron 25.0%
!! ATATTAGAGCTTTGTATTAC+AGG - chr1.3:44494208-44494227 None:intergenic 25.0%
!! CTCTATCTTTAATTTATCTC+AGG + chr1.3:44496934-44496953 MS.gene034952:intron 25.0%
!! GACAGAAATTCACATTTTAA+CGG + chr1.3:44494180-44494199 MS.gene034952:intron 25.0%
!! GGAAAAATCTTTATTTCTCA+AGG + chr1.3:44495195-44495214 MS.gene034952:intron 25.0%
!! TCCATAAGCACTTTATTTAA+GGG - chr1.3:44497169-44497188 None:intergenic 25.0%
!! TCTAAAACAGAGATAGAAAA+GGG + chr1.3:44494740-44494759 MS.gene034952:intron 25.0%
!! TGATAAGAGAAGGATATTTT+CGG - chr1.3:44493319-44493338 None:intergenic 25.0%
!! TGTATAATGGGATGTAATTA+AGG + chr1.3:44495269-44495288 MS.gene034952:intron 25.0%
!! TTATCTTCCTTTAGTTTAAC+GGG + chr1.3:44496302-44496321 MS.gene034952:intron 25.0%
!! TTTTTACTATAAGGAATGTG+TGG - chr1.3:44495724-44495743 None:intergenic 25.0%
!!! AAAAATGAGTTTTAGAAGAG+GGG + chr1.3:44494678-44494697 MS.gene034952:intron 25.0%
!!! ACGTTTTCTTGTTTATATGA+GGG + chr1.3:44494476-44494495 MS.gene034952:intron 25.0%
!!! ATACTTTGAATTTTAGGGAT+TGG + chr1.3:44492119-44492138 MS.gene034952:intron 25.0%
!!! ATATGCTTTCATATTTTGGT+TGG + chr1.3:44493243-44493262 MS.gene034952:CDS 25.0%
!!! ATGTAGAATATTTTGATCCA+AGG - chr1.3:44493824-44493843 None:intergenic 25.0%
!!! TAACCATGCTTTTTACTATA+AGG - chr1.3:44495733-44495752 None:intergenic 25.0%
!!! TACTTTGAATTTTAGGGATT+GGG + chr1.3:44492120-44492139 MS.gene034952:intron 25.0%
!!! TCTCTTCTAAATGGATTTTA+TGG + chr1.3:44496201-44496220 MS.gene034952:intron 25.0%
!!! TGTTGATTCTTTTGTTATGT+TGG + chr1.3:44496823-44496842 MS.gene034952:intron 25.0%
!!! TGTTTTTTAATGCTACTTAC+TGG + chr1.3:44496742-44496761 MS.gene034952:intron 25.0%
!!! TTCTAAAACAGAGATAGAAA+AGG + chr1.3:44494739-44494758 MS.gene034952:intron 25.0%
!!! TTTGACTTTTCTTTGATGTT+TGG - chr1.3:44494849-44494868 None:intergenic 25.0%
!!! TTTTTGGTTGAACAATTTGA+GGG + chr1.3:44492084-44492103 MS.gene034952:intron 25.0%
AAAAAATGCTATTCCAGCAT+AGG - chr1.3:44494270-44494289 None:intergenic 30.0%
AAAAATGCTATTCCAGCATA+GGG - chr1.3:44494269-44494288 None:intergenic 30.0%
AAAGGCCAACATTATGAATA+AGG - chr1.3:44494454-44494473 None:intergenic 30.0%
AAATATTATGGTCCATGAGA+TGG + chr1.3:44496491-44496510 MS.gene034952:intron 30.0%
AACCTTCAAAAATTTAGACG+GGG - chr1.3:44494121-44494140 None:intergenic 30.0%
AAGAAATTTATTACCTTCCG+CGG - chr1.3:44496998-44497017 None:intergenic 30.0%
AATTTCAGTACATGGAAATG+TGG - chr1.3:44495496-44495515 None:intergenic 30.0%
ACCTAAAAAGCTCTATTATG+AGG + chr1.3:44495228-44495247 MS.gene034952:intron 30.0%
AGAAATGTGATGATTAATCG+TGG - chr1.3:44494939-44494958 None:intergenic 30.0%
AGAGACACTAAAACATCAAA+TGG + chr1.3:44493432-44493451 MS.gene034952:CDS 30.0%
AGTCAATTTGGGAAATGATT+TGG + chr1.3:44496013-44496032 MS.gene034952:intron 30.0%
AGTCTTCAAGACATTGTAAA+AGG - chr1.3:44495083-44495102 None:intergenic 30.0%
ATAAAAACTGTCCCAATGTT+TGG - chr1.3:44492788-44492807 None:intergenic 30.0%
ATATCTATTGAAGAAATCCC+GGG - chr1.3:44497110-44497129 None:intergenic 30.0%
ATATTCAGACAAGACAGTAT+CGG + chr1.3:44493784-44493803 MS.gene034952:CDS 30.0%
CAACATTATGAATAAGGCAT+GGG - chr1.3:44494448-44494467 None:intergenic 30.0%
CACTGATGATAAAAAATGTG+TGG + chr1.3:44493080-44493099 MS.gene034952:CDS 30.0%
CATATCTATTGAAGAAATCC+CGG - chr1.3:44497111-44497130 None:intergenic 30.0%
CATCAGTTTATGTTATAAGC+TGG + chr1.3:44492747-44492766 MS.gene034952:intron 30.0%
CATGTCAAACCAAAACAATA+TGG - chr1.3:44492824-44492843 None:intergenic 30.0%
CCAATTGCAAACTATAAAGT+TGG - chr1.3:44496521-44496540 None:intergenic 30.0%
CCTGTAATTCTAGTCAATTT+GGG + chr1.3:44496002-44496021 MS.gene034952:intron 30.0%
CTAGCAATAATGATGTCAAT+AGG + chr1.3:44494957-44494976 MS.gene034952:intron 30.0%
CTTAGTTATGGGTGTATAAT+GGG + chr1.3:44495257-44495276 MS.gene034952:intron 30.0%
CTTCCTAGATAATAAACCAA+TGG - chr1.3:44492384-44492403 None:intergenic 30.0%
CTTTATCTAATACTCAGTTC+AGG - chr1.3:44496609-44496628 None:intergenic 30.0%
GCAAGTTATTATGTTGAAAC+TGG - chr1.3:44496785-44496804 None:intergenic 30.0%
GCTGGAATTGATTAATTGTA+TGG + chr1.3:44494039-44494058 MS.gene034952:intron 30.0%
GTATTATTTGATCCTCATAG+TGG + chr1.3:44493897-44493916 MS.gene034952:CDS 30.0%
GTCAATTTGGGAAATGATTT+GGG + chr1.3:44496014-44496033 MS.gene034952:intron 30.0%
TAAACATGAATAATGAGTGC+TGG + chr1.3:44494597-44494616 MS.gene034952:intron 30.0%
TAACTGTTCATCCAAACATT+GGG + chr1.3:44492774-44492793 MS.gene034952:intron 30.0%
TAATAAACCAATGGCTCATT+TGG - chr1.3:44492375-44492394 None:intergenic 30.0%
TACTGAAATTAAGGTTGAGT+GGG + chr1.3:44495506-44495525 MS.gene034952:intron 30.0%
TCAACCTTAATTTCAGTACA+TGG - chr1.3:44495504-44495523 None:intergenic 30.0%
TCATGCAAATCAATTACTTC+AGG + chr1.3:44496678-44496697 MS.gene034952:intron 30.0%
TCCTGTAATTCTAGTCAATT+TGG + chr1.3:44496001-44496020 MS.gene034952:intron 30.0%
TGCAATCACCCTAATTATAT+AGG - chr1.3:44495365-44495384 None:intergenic 30.0%
TGGGAATTGACTAAATATCA+TGG + chr1.3:44494335-44494354 MS.gene034952:intron 30.0%
TTAACTGTTCATCCAAACAT+TGG + chr1.3:44492773-44492792 MS.gene034952:intron 30.0%
TTAAGCAACCATTTAGACTA+CGG + chr1.3:44492501-44492520 MS.gene034952:intron 30.0%
TTACTGTTAGGAAGAATAAG+AGG - chr1.3:44493381-44493400 None:intergenic 30.0%
TTCTACTTTCTATCAAGACT+GGG - chr1.3:44494802-44494821 None:intergenic 30.0%
TTGTTGTACTTCTAACATCT+TGG + chr1.3:44496384-44496403 MS.gene034952:intron 30.0%
TTTATGTGTTAATAGGTTGC+TGG + chr1.3:44494021-44494040 MS.gene034952:intron 30.0%
TTTCATAAGCTATCTTAGAG+AGG - chr1.3:44492649-44492668 None:intergenic 30.0%
TTTCTACTTTCTATCAAGAC+TGG - chr1.3:44494803-44494822 None:intergenic 30.0%
TTTCTGATAAGATCACAGTT+TGG + chr1.3:44495651-44495670 MS.gene034952:intron 30.0%
! ACCTCATAATAGAGCTTTTT+AGG - chr1.3:44495232-44495251 None:intergenic 30.0%
! ATAATGGGATGTAATTAAGG+TGG + chr1.3:44495272-44495291 MS.gene034952:intron 30.0%
! ATATTTTCGCTATGTAGAGT+AGG - chr1.3:44493999-44494018 None:intergenic 30.0%
! CCAACTTTATAGTTTGCAAT+TGG + chr1.3:44496518-44496537 MS.gene034952:intron 30.0%
! CTCCATAAGCACTTTATTTA+AGG - chr1.3:44497170-44497189 None:intergenic 30.0%
! GATAAGAGAAGGATATTTTC+GGG - chr1.3:44493318-44493337 None:intergenic 30.0%
! GATCAATTGTTGATAAGAGA+AGG - chr1.3:44493329-44493348 None:intergenic 30.0%
! GTAATGATAAGAAGCACATA+AGG + chr1.3:44495298-44495317 MS.gene034952:intron 30.0%
! TAATTTGTAAGCGAAAGAGA+GGG + chr1.3:44496091-44496110 MS.gene034952:intron 30.0%
! TTTTATAAAGCCCAGACTTT+AGG + chr1.3:44495579-44495598 MS.gene034952:intron 30.0%
! TTTTTCCATGTTTCCAACTA+TGG - chr1.3:44495182-44495201 None:intergenic 30.0%
! TTTTTGTTGAGGAAATGGTT+TGG + chr1.3:44496710-44496729 MS.gene034952:intron 30.0%
!! AACATAATAACTTGCTTTGC+TGG + chr1.3:44496790-44496809 MS.gene034952:intron 30.0%
!! ATAGTCTTGTCTTTACTGTT+AGG - chr1.3:44493393-44493412 None:intergenic 30.0%
!! CACGTTTTCTTGTTTATATG+AGG + chr1.3:44494475-44494494 MS.gene034952:intron 30.0%
!! CAGTTTTTATTTGTCGTTGT+TGG + chr1.3:44492887-44492906 MS.gene034952:intron 30.0%
!! CGTTTTCTTGTTTATATGAG+GGG + chr1.3:44494477-44494496 MS.gene034952:intron 30.0%
!! TTAATTTGTAAGCGAAAGAG+AGG + chr1.3:44496090-44496109 MS.gene034952:intron 30.0%
!!! CTTTCATATTTTGGTTGGAT+TGG + chr1.3:44493248-44493267 MS.gene034952:CDS 30.0%
!!! GGCTGATTATTTTTTTGTTG+AGG + chr1.3:44496699-44496718 MS.gene034952:intron 30.0%
!!! GTCTTTGCTTTTTTGTGTTT+TGG + chr1.3:44492863-44492882 MS.gene034952:intron 30.0%
!!! GTTTTTGGTTGAACAATTTG+AGG + chr1.3:44492083-44492102 MS.gene034952:intron 30.0%
!!! TCTATCTCTGTTTTAGAAGA+CGG - chr1.3:44494737-44494756 None:intergenic 30.0%
!!! TGTTTTTGGCCATATTGTTT+TGG + chr1.3:44492812-44492831 MS.gene034952:intron 30.0%
!!! TTTGGACAGTTTTTTTTTCC+AGG - chr1.3:44496553-44496572 None:intergenic 30.0%
AAAATGCTATTCCAGCATAG+GGG - chr1.3:44494268-44494287 None:intergenic 35.0%
AAATGGACAGCATGTTTGTA+TGG + chr1.3:44493137-44493156 MS.gene034952:CDS 35.0%
AACATAGTTACGAAGGACTT+GGG - chr1.3:44495903-44495922 None:intergenic 35.0%
AACTGCTCCAAATCACTAAA+TGG - chr1.3:44492149-44492168 None:intergenic 35.0%
AAGAAGAACGAACAGAATGA+TGG - chr1.3:44491978-44491997 None:intergenic 35.0%
AATTTGTAAGCGAAAGAGAG+GGG + chr1.3:44496092-44496111 MS.gene034952:intron 35.0%
ACAATGTCTTGAAGACTTTC+AGG + chr1.3:44495086-44495105 MS.gene034952:intron 35.0%
AGAAGAACGAACAGAATGAT+GGG - chr1.3:44491977-44491996 None:intergenic 35.0%
ATAACTGTAAGTACCAGAAC+GGG + chr1.3:44495008-44495027 MS.gene034952:intron 35.0%
ATAATTCTCAGATCGCACTA+GGG + chr1.3:44497074-44497093 MS.gene034952:intron 35.0%
ATACAAACATGCTGTCCATT+TGG - chr1.3:44493138-44493157 None:intergenic 35.0%
ATAGTGGTGACAACTTTGAT+AGG + chr1.3:44493913-44493932 MS.gene034952:CDS 35.0%
ATCAACAATTGATCCGTCTA+AGG + chr1.3:44493335-44493354 MS.gene034952:CDS 35.0%
ATCCATTTAGAAGAGAATGG+TGG - chr1.3:44496197-44496216 None:intergenic 35.0%
ATTTAGTTGGTCACGTTGAA+AGG + chr1.3:44494074-44494093 MS.gene034952:intron 35.0%
CAAAATCGTTATCTCATCCA+GGG - chr1.3:44493040-44493059 None:intergenic 35.0%
CAAATGCATACCTAAAGTCT+GGG - chr1.3:44495592-44495611 None:intergenic 35.0%
CATAACTGTAAGTACCAGAA+CGG + chr1.3:44495007-44495026 MS.gene034952:intron 35.0%
CCAACATTATGAATAAGGCA+TGG - chr1.3:44494449-44494468 None:intergenic 35.0%
CCCAAATTGACTAGAATTAC+AGG - chr1.3:44496005-44496024 None:intergenic 35.0%
CCTCAACTTGTAAAACAAGA+CGG - chr1.3:44495793-44495812 None:intergenic 35.0%
CCTTGGAATACTTTCTTTGA+TGG - chr1.3:44497481-44497500 None:intergenic 35.0%
CGGGATTTCTTCAATAGATA+TGG + chr1.3:44497109-44497128 MS.gene034952:CDS 35.0%
CTTCAGTGAGTGGTTTAATT+GGG - chr1.3:44494240-44494259 None:intergenic 35.0%
GAACCTGTGAAAACAACTTA+CGG + chr1.3:44492588-44492607 MS.gene034952:intron 35.0%
GCTTAGTTATGGGTGTATAA+TGG + chr1.3:44495256-44495275 MS.gene034952:intron 35.0%
GTACTGAAATTAAGGTTGAG+TGG + chr1.3:44495505-44495524 MS.gene034952:intron 35.0%
GTTCCATCATTAATGCTAAG+TGG - chr1.3:44496961-44496980 None:intergenic 35.0%
TAAGCAACCATTTAGACTAC+GGG + chr1.3:44492502-44492521 MS.gene034952:intron 35.0%
TAGAGAATTGATGCCATAGT+TGG + chr1.3:44495166-44495185 MS.gene034952:intron 35.0%
TAGGGATTGAGCAACAATTT+GGG + chr1.3:44492423-44492442 MS.gene034952:intron 35.0%
TAGTGGTGACAACTTTGATA+GGG + chr1.3:44493914-44493933 MS.gene034952:CDS 35.0%
TATAATTCTCAGATCGCACT+AGG + chr1.3:44497073-44497092 MS.gene034952:intron 35.0%
TCAAATGCATACCTAAAGTC+TGG - chr1.3:44495593-44495612 None:intergenic 35.0%
TCCATTTAGAAGAGAATGGT+GGG - chr1.3:44496196-44496215 None:intergenic 35.0%
TGATTAATCGTGGAAACACA+TGG - chr1.3:44494929-44494948 None:intergenic 35.0%
TGCTCAATCCCTAAAATTCA+AGG - chr1.3:44492416-44492435 None:intergenic 35.0%
TTAGACCATTTCAAGCATTC+TGG + chr1.3:44493111-44493130 MS.gene034952:CDS 35.0%
TTAGGGATTGAGCAACAATT+TGG + chr1.3:44492422-44492441 MS.gene034952:intron 35.0%
TTCAGTGAGTGGTTTAATTG+GGG - chr1.3:44494239-44494258 None:intergenic 35.0%
TTGCCAGTAACAGTTATATG+CGG - chr1.3:44494530-44494549 None:intergenic 35.0%
! AACGATTTTGCAACAGATTG+CGG + chr1.3:44493050-44493069 MS.gene034952:CDS 35.0%
! AAGTGACATGAGTGACTTTT+TGG + chr1.3:44497216-44497235 MS.gene034952:CDS 35.0%
! AAGTGCAAGTTAGTTGACTT+TGG + chr1.3:44493726-44493745 MS.gene034952:CDS 35.0%
! ATGAAGACACAGTTTTCGTT+AGG - chr1.3:44492249-44492268 None:intergenic 35.0%
! CCATGCCTTATTCATAATGT+TGG + chr1.3:44494446-44494465 MS.gene034952:intron 35.0%
! GCATTAATGATGGAACTTCT+TGG + chr1.3:44496965-44496984 MS.gene034952:CDS 35.0%
! GCATTCCATTCTAGAAATAG+AGG - chr1.3:44496341-44496360 None:intergenic 35.0%
! GCCCTTAAATAAAGTGCTTA+TGG + chr1.3:44497165-44497184 MS.gene034952:CDS 35.0%
! GGTATGCATTTGATGATTCT+TGG + chr1.3:44495600-44495619 MS.gene034952:intron 35.0%
! TCCTTTAGTTTAACGGGTAA+TGG + chr1.3:44496308-44496327 MS.gene034952:intron 35.0%
! TGAAGACACAGTTTTCGTTA+GGG - chr1.3:44492248-44492267 None:intergenic 35.0%
! TTAGTGATTTGGAGCAGTTT+GGG + chr1.3:44492150-44492169 MS.gene034952:intron 35.0%
! TTATAGTTTTCGGTTAACGG+TGG - chr1.3:44494297-44494316 None:intergenic 35.0%
! TTCCCCGTCTAAATTTTTGA+AGG + chr1.3:44494116-44494135 MS.gene034952:intron 35.0%
! TTTAGTGATTTGGAGCAGTT+TGG + chr1.3:44492149-44492168 MS.gene034952:intron 35.0%
! TTTTACTCGCATTTGTGCTT+TGG + chr1.3:44496882-44496901 MS.gene034952:intron 35.0%
! TTTTCTTTGATGTTTGGCGA+GGG - chr1.3:44494843-44494862 None:intergenic 35.0%
!! ATATGTTTTGAGCTTGCAAC+TGG + chr1.3:44493870-44493889 MS.gene034952:CDS 35.0%
!! CCATCAAAGAAAGTATTCCA+AGG + chr1.3:44497478-44497497 MS.gene034952:CDS 35.0%
!! GAGCCATTGGTTTATTATCT+AGG + chr1.3:44492378-44492397 MS.gene034952:intron 35.0%
!! GCAATCCTCTATTTCTAGAA+TGG + chr1.3:44496333-44496352 MS.gene034952:intron 35.0%
!!! AAAGTTGGTTTTCCATCTCA+TGG - chr1.3:44496506-44496525 None:intergenic 35.0%
!!! ACAGTTTTTTTTTCCAGGCA+TGG - chr1.3:44496548-44496567 None:intergenic 35.0%
!!! CGTTGTTGGCTTTATTGTTT+TGG + chr1.3:44492901-44492920 MS.gene034952:intron 35.0%
!!! GCTGCTGTGTTTTATTTAGT+TGG + chr1.3:44494061-44494080 MS.gene034952:intron 35.0%
!!! GTATGGTTTTTGAGTACCTT+GGG + chr1.3:44493154-44493173 MS.gene034952:CDS 35.0%
!!! TATGGTTTTTGAGTACCTTG+GGG + chr1.3:44493155-44493174 MS.gene034952:CDS 35.0%
!!! TGTATGGTTTTTGAGTACCT+TGG + chr1.3:44493153-44493172 MS.gene034952:CDS 35.0%
!!! TGTCTTTGCTTTTTTGTGTG+TGG + chr1.3:44492952-44492971 MS.gene034952:intron 35.0%
AAACAAGCCCGTAGTCTAAA+TGG - chr1.3:44492512-44492531 None:intergenic 40.0%
AACCAATGGCTCATTTGGAT+TGG - chr1.3:44492370-44492389 None:intergenic 40.0%
AATTGAATAGTCTCCCGTTC+TGG - chr1.3:44495024-44495043 None:intergenic 40.0%
ACACATTCTCAACGTGGAAA+GGG + chr1.3:44495759-44495778 MS.gene034952:intron 40.0%
ACTTTCTTACTCTGCTTCAG+TGG + chr1.3:44495327-44495346 MS.gene034952:intron 40.0%
AGAACAAGGACAAAGATGAG+AGG + chr1.3:44497389-44497408 MS.gene034952:CDS 40.0%
AGGACTTGGGATAGTAGAAT+AGG - chr1.3:44495890-44495909 None:intergenic 40.0%
ATCACAGTTTGGCATAAGCA+AGG + chr1.3:44495662-44495681 MS.gene034952:intron 40.0%
ATGAGGTGCAAGCTTAGTTA+TGG + chr1.3:44495245-44495264 MS.gene034952:intron 40.0%
ATTCTACATCTGCGGATCTT+TGG + chr1.3:44493835-44493854 MS.gene034952:CDS 40.0%
CAACATAGTTACGAAGGACT+TGG - chr1.3:44495904-44495923 None:intergenic 40.0%
CACTAGTAGGTTATCAGATG+CGG + chr1.3:44493623-44493642 MS.gene034952:CDS 40.0%
CAGTAAAGACAAGACTATGC+TGG + chr1.3:44493395-44493414 MS.gene034952:CDS 40.0%
CATCACACAACATCCTTGTT+TGG - chr1.3:44496571-44496590 None:intergenic 40.0%
CATCTTTGTCCTTGTTCTTC+TGG - chr1.3:44497387-44497406 None:intergenic 40.0%
CCAGAAACAAAAACCATGAG+AGG + chr1.3:44495817-44495836 MS.gene034952:intron 40.0%
CTCAAGAGACAATAGGCATT+AGG + chr1.3:44494711-44494730 MS.gene034952:intron 40.0%
GAACAAGGACAAAGATGAGA+GGG + chr1.3:44497390-44497409 MS.gene034952:CDS 40.0%
GAGTTAATAGGTTATCCCCA+AGG - chr1.3:44493173-44493192 None:intergenic 40.0%
GATGGTAATCATGAAACCTC+TGG + chr1.3:44493540-44493559 MS.gene034952:CDS 40.0%
GCAAAATCGTTATCTCATCC+AGG - chr1.3:44493041-44493060 None:intergenic 40.0%
GCCATTACCCGTTAAACTAA+AGG - chr1.3:44496312-44496331 None:intergenic 40.0%
GCTTCAGTGAGTGGTTTAAT+TGG - chr1.3:44494241-44494260 None:intergenic 40.0%
GGAATGAAGTCAAAAGAGCA+GGG + chr1.3:44493648-44493667 MS.gene034952:CDS 40.0%
GGACCACTTAGCATTAATGA+TGG + chr1.3:44496955-44496974 MS.gene034952:intron 40.0%
GGTCAGACTTGAGATTCAAT+TGG + chr1.3:44496035-44496054 MS.gene034952:intron 40.0%
GTTTCTCAGGAACAAAGTCA+AGG - chr1.3:44497249-44497268 None:intergenic 40.0%
TAATTCTCAGATCGCACTAG+GGG + chr1.3:44497075-44497094 MS.gene034952:intron 40.0%
TACTTCTGACCAGAAGAACA+AGG + chr1.3:44497375-44497394 MS.gene034952:CDS 40.0%
TAGGGTGATTGCATGTTGAT+TGG + chr1.3:44495372-44495391 MS.gene034952:intron 40.0%
TCAAAGTTGTCACCACTATG+AGG - chr1.3:44493912-44493931 None:intergenic 40.0%
TCCCACCATTCTCTTCTAAA+TGG + chr1.3:44496192-44496211 MS.gene034952:intron 40.0%
TCGCATTTGTGCTTTGGTTA+TGG + chr1.3:44496888-44496907 MS.gene034952:intron 40.0%
TCTCTTGCAGAACTTGCATT+CGG - chr1.3:44493582-44493601 None:intergenic 40.0%
TGAGGTGCAAGCTTAGTTAT+GGG + chr1.3:44495246-44495265 MS.gene034952:intron 40.0%
TGATGCCATAGTTGGAAACA+TGG + chr1.3:44495174-44495193 MS.gene034952:intron 40.0%
TGGAATGAAGTCAAAAGAGC+AGG + chr1.3:44493647-44493666 MS.gene034952:CDS 40.0%
TGGATTCTCAAGACAGTGAT+GGG - chr1.3:44496276-44496295 None:intergenic 40.0%
TGGGTAGCCATTTAGTGATT+TGG + chr1.3:44492139-44492158 MS.gene034952:intron 40.0%
TTAACCACACATTCTCAACG+TGG + chr1.3:44495753-44495772 MS.gene034952:intron 40.0%
TTCAAGCATTCTGGTCCAAA+TGG + chr1.3:44493120-44493139 MS.gene034952:CDS 40.0%
TTCTGGCAACATAGTTACGA+AGG - chr1.3:44495910-44495929 None:intergenic 40.0%
TTGATCCAAGGATAACCTCT+GGG - chr1.3:44493812-44493831 None:intergenic 40.0%
TTGGACCAGAATGCTTGAAA+TGG - chr1.3:44493119-44493138 None:intergenic 40.0%
TTGGATTCTCAAGACAGTGA+TGG - chr1.3:44496277-44496296 None:intergenic 40.0%
TTGTTGTGAAGATGACGTGT+TGG + chr1.3:44494504-44494523 MS.gene034952:intron 40.0%
TTTGATCCAAGGATAACCTC+TGG - chr1.3:44493813-44493832 None:intergenic 40.0%
TTTGATGGAGAATGCATGAG+TGG - chr1.3:44497466-44497485 None:intergenic 40.0%
! AATGGTGGGAAGTCATTTGT+GGG - chr1.3:44496182-44496201 None:intergenic 40.0%
! ATCCTTTGAGGGAGTCAAAA+TGG + chr1.3:44495964-44495983 MS.gene034952:intron 40.0%
! ATTTTGCAACAGATTGCGGA+GGG + chr1.3:44493054-44493073 MS.gene034952:CDS 40.0%
! CATTTGATGATTCTTGGCCT+CGG + chr1.3:44495606-44495625 MS.gene034952:intron 40.0%
! CTTTTCTTTGATGTTTGGCG+AGG - chr1.3:44494844-44494863 None:intergenic 40.0%
! GCAAGGAGGGTAAAGTTTTA+TGG + chr1.3:44495679-44495698 MS.gene034952:intron 40.0%
! GTGATTTGAGACATATCCGT+CGG + chr1.3:44497131-44497150 MS.gene034952:CDS 40.0%
! GTTACTGGCAACATTGATTG+TGG + chr1.3:44494539-44494558 MS.gene034952:intron 40.0%
! GTTTGCAGTTAACTTGAGTC+TGG + chr1.3:44497048-44497067 MS.gene034952:intron 40.0%
! TCACGGATTGCCTATCAATA+TGG + chr1.3:44493212-44493231 MS.gene034952:CDS 40.0%
! TGATTAGAAGACGGCATTGA+TGG - chr1.3:44497334-44497353 None:intergenic 40.0%
!! ATGCCGTAAGTTGTTTTCAC+AGG - chr1.3:44492594-44492613 None:intergenic 40.0%
!! CCTCTCATGGTTTTTGTTTC+TGG - chr1.3:44495820-44495839 None:intergenic 40.0%
!! TTGACTTTGGTAATGCTTGC+TGG + chr1.3:44493739-44493758 MS.gene034952:CDS 40.0%
!!! CCGTCTTGTTTTACAAGTTG+AGG + chr1.3:44495790-44495809 MS.gene034952:intron 40.0%
!!! TTTTGATTTCCCAGCCTGAT+TGG + chr1.3:44496227-44496246 MS.gene034952:intron 40.0%
AACTTCTTGGAATGATGCCG+CGG + chr1.3:44496978-44496997 MS.gene034952:CDS 45.0%
AAGTAGCAGTTTCAGCACCA+GGG - chr1.3:44497360-44497379 None:intergenic 45.0%
AATTCTCAGATCGCACTAGG+GGG + chr1.3:44497076-44497095 MS.gene034952:intron 45.0%
ACAGTTTGGCATAAGCAAGG+AGG + chr1.3:44495665-44495684 MS.gene034952:intron 45.0%
AGATGATTCTACAGCACCAG+AGG - chr1.3:44493559-44493578 None:intergenic 45.0%
AGCCAATCCAAATGAGCCAT+TGG + chr1.3:44492365-44492384 MS.gene034952:intron 45.0%
AGTAGGTTATCAGATGCGGA+TGG + chr1.3:44493627-44493646 MS.gene034952:CDS 45.0%
ATCTTCTGTGCCTTCGTCTT+CGG - chr1.3:44491836-44491855 None:intergenic 45.0%
ATGCCTTATCCAATCAGGCT+GGG - chr1.3:44496239-44496258 None:intergenic 45.0%
CAACCATGCCTTATCCAATC+AGG - chr1.3:44496244-44496263 None:intergenic 45.0%
CACACATTCTCAACGTGGAA+AGG + chr1.3:44495758-44495777 MS.gene034952:intron 45.0%
CAGTTTGGCATAAGCAAGGA+GGG + chr1.3:44495666-44495685 MS.gene034952:intron 45.0%
CCAGGGTTGTGATTAGAAGA+CGG - chr1.3:44497343-44497362 None:intergenic 45.0%
CTACATCCGTGGATGAATGT+AGG + chr1.3:44497292-44497311 MS.gene034952:CDS 45.0%
CTTTCCACGTTGAGAATGTG+TGG - chr1.3:44495760-44495779 None:intergenic 45.0%
GATTTCCTGGGATCCTTAGA+CGG - chr1.3:44493351-44493370 None:intergenic 45.0%
GTGCGCATCAGAATCATGTA+TGG + chr1.3:44494377-44494396 MS.gene034952:intron 45.0%
GTGGCAGCATACAAAACACA+AGG - chr1.3:44495705-44495724 None:intergenic 45.0%
TATGTCGTTCAGAGCAAGCT+TGG + chr1.3:44491913-44491932 MS.gene034952:CDS 45.0%
TCTAAGGATCCCAGGAAATC+TGG + chr1.3:44493351-44493370 MS.gene034952:CDS 45.0%
TGACAACTTTGATAGGGACG+AGG + chr1.3:44493920-44493939 MS.gene034952:CDS 45.0%
TGCGAGTCATCATCCTTTGA+GGG + chr1.3:44495953-44495972 MS.gene034952:intron 45.0%
TGGAGATTTGCAGAGATACG+TGG + chr1.3:44492972-44492991 MS.gene034952:intron 45.0%
TGGCCGCATATAACTGTTAC+TGG + chr1.3:44494524-44494543 MS.gene034952:intron 45.0%
TGGGATGTAATTAAGGTGGC+AGG + chr1.3:44495276-44495295 MS.gene034952:intron 45.0%
TTCTCAACGTGGAAAGGGAT+AGG + chr1.3:44495764-44495783 MS.gene034952:intron 45.0%
TTGCGAGTCATCATCCTTTG+AGG + chr1.3:44495952-44495971 MS.gene034952:intron 45.0%
TTTCCCAGCCTGATTGGATA+AGG + chr1.3:44496233-44496252 MS.gene034952:intron 45.0%
! ATGGTGGGAAGTCATTTGTG+GGG - chr1.3:44496181-44496200 None:intergenic 45.0%
! ATTGATGGCTCCAAAAGACG+GGG - chr1.3:44497319-44497338 None:intergenic 45.0%
! CATTGATGGCTCCAAAAGAC+GGG - chr1.3:44497320-44497339 None:intergenic 45.0%
! CTTTGAGGGAGTCAAAATGG+TGG + chr1.3:44495967-44495986 MS.gene034952:intron 45.0%
! GAATGGTGGGAAGTCATTTG+TGG - chr1.3:44496183-44496202 None:intergenic 45.0%
! GACTACGGGCTTGTTTGAAT+TGG + chr1.3:44492516-44492535 MS.gene034952:intron 45.0%
! GATTTTGCAACAGATTGCGG+AGG + chr1.3:44493053-44493072 MS.gene034952:CDS 45.0%
! GCATTGATGGCTCCAAAAGA+CGG - chr1.3:44497321-44497340 None:intergenic 45.0%
! TGATTTGGAGCAGTTTGGGT+TGG + chr1.3:44492154-44492173 MS.gene034952:intron 45.0%
!! GAACAAGCTTCTAGTTCTGC+TGG + chr1.3:44493600-44493619 MS.gene034952:CDS 45.0%
!! TAACTTGCTTTGCTGGAGAG+TGG + chr1.3:44496797-44496816 MS.gene034952:intron 45.0%
!!! CACCATTTTGACTCCCTCAA+AGG - chr1.3:44495969-44495988 None:intergenic 45.0%
AAAGAGCAGGGCAACAGAAG+AGG + chr1.3:44493660-44493679 MS.gene034952:CDS 50.0%
AAAGCCAAGCAAGCAGCTCA+TGG + chr1.3:44493492-44493511 MS.gene034952:CDS 50.0%
ACATCCATGAGCTGCTTGCT+TGG - chr1.3:44493499-44493518 None:intergenic 50.0%
ATGGAATGGTACACAGAGCC+AGG + chr1.3:44494354-44494373 MS.gene034952:intron 50.0%
ATTCTCAGATCGCACTAGGG+GGG + chr1.3:44497077-44497096 MS.gene034952:intron 50.0%
CAAGGACAAAGATGAGAGGG+AGG + chr1.3:44497393-44497412 MS.gene034952:CDS 50.0%
CAGCCTGATTGGATAAGGCA+TGG + chr1.3:44496238-44496257 MS.gene034952:intron 50.0%
CATGCCTTATCCAATCAGGC+TGG - chr1.3:44496240-44496259 None:intergenic 50.0%
CATTCATCCACGGATGTAGC+AGG - chr1.3:44497291-44497310 None:intergenic 50.0%
CCAAGCATCAGAGAAAACCG+AGG - chr1.3:44495626-44495645 None:intergenic 50.0%
CCGTCTTCTAATCACAACCC+TGG + chr1.3:44497340-44497359 MS.gene034952:CDS 50.0%
CGTTCAGAGCAAGCTTGGTT+GGG + chr1.3:44491918-44491937 MS.gene034952:CDS 50.0%
CTGAAGCAAAACCCCTATGC+TGG + chr1.3:44494254-44494273 MS.gene034952:intron 50.0%
CTTGCACTTGACATCAGCTG+AGG - chr1.3:44493715-44493734 None:intergenic 50.0%
GAAGTAGCAGTTTCAGCACC+AGG - chr1.3:44497361-44497380 None:intergenic 50.0%
GAGTGCTCAGCATTACACAG+AGG + chr1.3:44493011-44493030 MS.gene034952:CDS 50.0%
GATTTCACCTCCGAAGACGA+AGG + chr1.3:44491823-44491842 MS.gene034952:CDS 50.0%
GCAGTTTCTGTCTCACTGTG+CGG - chr1.3:44493689-44493708 None:intergenic 50.0%
GGGGTCATTTCTCCACTGTT+TGG + chr1.3:44491938-44491957 MS.gene034952:CDS 50.0%
GTTCAGAGCAAGCTTGGTTG+GGG + chr1.3:44491919-44491938 MS.gene034952:CDS 50.0%
GTTTCCAATTCCAGCCTCCA+TGG - chr1.3:44497419-44497438 None:intergenic 50.0%
TAGGCGTCTGCATCTTGTTC+AGG - chr1.3:44495871-44495890 None:intergenic 50.0%
TCAACGTGGAAAGGGATAGG+CGG + chr1.3:44495767-44495786 MS.gene034952:intron 50.0%
TCGTTCAGAGCAAGCTTGGT+TGG + chr1.3:44491917-44491936 MS.gene034952:CDS 50.0%
TGCAATTGGACAACCATGCC+TGG + chr1.3:44496532-44496551 MS.gene034952:intron 50.0%
TGGAATGGTACACAGAGCCA+GGG + chr1.3:44494355-44494374 MS.gene034952:intron 50.0%
TGGTGGGAAGTCATTTGTGG+GGG - chr1.3:44496180-44496199 None:intergenic 50.0%
TGTAAGCGAAAGAGAGGGGA+AGG + chr1.3:44496096-44496115 MS.gene034952:intron 50.0%
TTGATCCGTCTAAGGATCCC+AGG + chr1.3:44493343-44493362 MS.gene034952:CDS 50.0%
! AGGGGTTTTGCTTCAGTGAG+TGG - chr1.3:44494250-44494269 None:intergenic 50.0%
! CAGTTGCCTCGACTTGTTTC+TGG - chr1.3:44495847-44495866 None:intergenic 50.0%
! CCTCGGTTTTCTCTGATGCT+TGG + chr1.3:44495623-44495642 MS.gene034952:intron 50.0%
! GAATGTAGGTCCCCGTCTTT+TGG + chr1.3:44497306-44497325 MS.gene034952:CDS 50.0%
! GCTCTGAACGACATAACGAC+CGG - chr1.3:44491908-44491927 None:intergenic 50.0%
! GGAGGTGAAATCGCTGCTTT+CGG - chr1.3:44491815-44491834 None:intergenic 50.0%
!! AAGAGGAGCACCAGATTTCC+TGG - chr1.3:44493364-44493383 None:intergenic 50.0%
!! AGAGGAGCACCAGATTTCCT+GGG - chr1.3:44493363-44493382 None:intergenic 50.0%
!! CTAGTTCTGCTGGCACTAGT+AGG + chr1.3:44493610-44493629 MS.gene034952:CDS 50.0%
!! GAAGGTATCGCCGATTCGAA+CGG - chr1.3:44491881-44491900 None:intergenic 50.0%
!! GAGAAGGAGGCATCTGAAGA+TGG + chr1.3:44493522-44493541 MS.gene034952:CDS 50.0%
!! TGTTTCTGGTCTGCCTCTCA+TGG - chr1.3:44495833-44495852 None:intergenic 50.0%
AAGCGAAAGAGAGGGGAAGG+AGG + chr1.3:44496099-44496118 MS.gene034952:intron 55.0%
ACAGAAGATTACCGTCGCGG+TGG + chr1.3:44491847-44491866 MS.gene034952:CDS 55.0%
AGCTCATGGATGTGCGGAGA+AGG + chr1.3:44493506-44493525 MS.gene034952:CDS 55.0%
ATCCCAAGCGAGCCAAACAG+TGG - chr1.3:44491953-44491972 None:intergenic 55.0%
ATCGGCGATACCTTCAGCTC+CGG + chr1.3:44491886-44491905 MS.gene034952:CDS 55.0%
CAAAGATGAGAGGGAGGCCA+TGG + chr1.3:44497399-44497418 MS.gene034952:CDS 55.0%
CATGATTCTGATGCGCACCC+TGG - chr1.3:44494375-44494394 None:intergenic 55.0%
CCTGAGAAACGACCTACAGC+CGG + chr1.3:44497259-44497278 MS.gene034952:CDS 55.0%
CGGGGACCTACATTCATCCA+CGG - chr1.3:44497301-44497320 None:intergenic 55.0%
GACATAACGACCGGAGCTGA+AGG - chr1.3:44491899-44491918 None:intergenic 55.0%
GCAAGCAGCTCATGGATGTG+CGG + chr1.3:44493500-44493519 MS.gene034952:CDS 55.0%
GGAAGTCATTTGTGGGGGGA+AGG - chr1.3:44496175-44496194 None:intergenic 55.0%
GGCACAGAAGATTACCGTCG+CGG + chr1.3:44491844-44491863 MS.gene034952:CDS 55.0%
GGCAGACCAGAAACAAGTCG+AGG + chr1.3:44495838-44495857 MS.gene034952:intron 55.0%
GGTGGGAAGTCATTTGTGGG+GGG - chr1.3:44496179-44496198 None:intergenic 55.0%
GTCAATGCCTGCTACATCCG+TGG + chr1.3:44497281-44497300 MS.gene034952:CDS 55.0%
TCATGGATGTGCGGAGAAGG+AGG + chr1.3:44493509-44493528 MS.gene034952:CDS 55.0%
TCTTGGAATGATGCCGCGGA+AGG + chr1.3:44496982-44497001 MS.gene034952:CDS 55.0%
TTCTGTGCCTTCGTCTTCGG+AGG - chr1.3:44491833-44491852 None:intergenic 55.0%
! ATATCCGTCGGCTGCGATTC+TGG + chr1.3:44497143-44497162 MS.gene034952:CDS 55.0%
! CTCCACTGTTTGGCTCGCTT+GGG + chr1.3:44491948-44491967 MS.gene034952:CDS 55.0%
! GAAATCGCTGCTTTCGGTGG+TGG - chr1.3:44491809-44491828 None:intergenic 55.0%
! GGTGAAATCGCTGCTTTCGG+TGG - chr1.3:44491812-44491831 None:intergenic 55.0%
! TCTCCACTGTTTGGCTCGCT+TGG + chr1.3:44491947-44491966 MS.gene034952:CDS 55.0%
!! AAGACAGTATCGGTGCCCAG+AGG + chr1.3:44493794-44493813 MS.gene034952:CDS 55.0%
!! CGGATGTAGCAGGCATTGAC+CGG - chr1.3:44497281-44497300 None:intergenic 55.0%
AGATGAGAGGGAGGCCATGG+AGG + chr1.3:44497402-44497421 MS.gene034952:CDS 60.0%
CCGGCTGTAGGTCGTTTCTC+AGG - chr1.3:44497262-44497281 None:intergenic 60.0%
CGGTGCCCAGAGGTTATCCT+TGG + chr1.3:44493804-44493823 MS.gene034952:CDS 60.0%
GAGGCCATGGAGGCTGGAAT+TGG + chr1.3:44497412-44497431 MS.gene034952:CDS 60.0%
GCATTACACAGAGGCTGCCC+TGG + chr1.3:44493020-44493039 MS.gene034952:CDS 60.0%
GGCTACCACGCCGTTCGAAT+CGG + chr1.3:44491868-44491887 MS.gene034952:CDS 60.0%
!! ACTAGGGGGGCGTTATTCCC+GGG + chr1.3:44497090-44497109 MS.gene034952:CDS 60.0%
!! AGCAGGCATTGACCGGCTGT+AGG - chr1.3:44497274-44497293 None:intergenic 60.0%
!! CACTAGGGGGGCGTTATTCC+CGG + chr1.3:44497089-44497108 MS.gene034952:CDS 60.0%
!! TATCGCCGATTCGAACGGCG+TGG - chr1.3:44491876-44491895 None:intergenic 60.0%
AGGGCCAGAATCGCAGCCGA+CGG - chr1.3:44497150-44497169 None:intergenic 65.0%
GAGAGGGAGGCCATGGAGGC+TGG + chr1.3:44497406-44497425 MS.gene034952:CDS 70.0%
CGGCGTGGTAGCCACCGCGA+CGG - chr1.3:44491861-44491880 None:intergenic 75.0%


Chromosome Type Strat End Strand Name
chr1.3 gene 44491784 44497513 44491784 ID=MS.gene034952
chr1.3 mRNA 44491784 44497513 44491784 ID=MS.gene034952.t1;Parent=MS.gene034952
chr1.3 exon 44491784 44491984 44491784 ID=MS.gene034952.t1.exon1;Parent=MS.gene034952.t1
chr1.3 CDS 44491784 44491984 44491784 ID=cds.MS.gene034952.t1;Parent=MS.gene034952.t1
chr1.3 exon 44492985 44493941 44492985 ID=MS.gene034952.t1.exon2;Parent=MS.gene034952.t1
chr1.3 CDS 44492985 44493941 44492985 ID=cds.MS.gene034952.t1;Parent=MS.gene034952.t1
chr1.3 exon 44496956 44497003 44496956 ID=MS.gene034952.t1.exon3;Parent=MS.gene034952.t1
chr1.3 CDS 44496956 44497003 44496956 ID=cds.MS.gene034952.t1;Parent=MS.gene034952.t1
chr1.3 exon 44497085 44497513 44497085 ID=MS.gene034952.t1.exon4;Parent=MS.gene034952.t1
chr1.3 CDS 44497085 44497513 44497085 ID=cds.MS.gene034952.t1;Parent=MS.gene034952.t1
Gene Sequence

>MS.gene034952

ATGGGTGGCGGACACGACGATACCACCACCGAAAGCAGCGATTTCACCTCCGAAGACGAAGGCACAGAAGATTACCGTCGCGGTGGCTACCACGCCGTTCGAATCGGCGATACCTTCAGCTCCGGTCGTTATGTCGTTCAGAGCAAGCTTGGTTGGGGTCATTTCTCCACTGTTTGGCTCGCTTGGGATTCCCATCATTCTGTTCGTTCTTCTTCCCCTAAAAATCTTCTCTTTTTACATTTTTTTTATATTTATTTAATCACAAATTTCATTTTTTTTATTAAGTTTTTTTTTTTAATGTTTTTGGTTGAACAATTTGAGGGATTAAGTAAATGATACTTTGAATTTTAGGGATTGGGTAGCCATTTAGTGATTTGGAGCAGTTTGGGTTGGCTTATTTTTGAGCTTATGAACAATAGCTTATGTAAATAAATAAGCTTTTGTGTTAATTCATAAGTTCTCCCTAACGAAAACTGTGTCTTCATAAGCTGTTTTTTCATAAACTACCTTGACAAGCTTATGAATAATAGATAAAAGCTTATTTATTTACATAAGCTCCTTTGCATAAGCTAAAAAAAATAAGCCAATCCAAATGAGCCATTGGTTTATTATCTAGGAAGAATAGAATACCTTGAATTTTAGGGATTGAGCAACAATTTGGGTATTGAGCAATTTAATTTATATCTAGGAAGAAAATAATGCTTTGAATTTTAGGGATTAAGCAACCATTTAGACTACGGGCTTGTTTGAATTGGCTTATTTCAACTTATCTATTGACATAAACAATTCTGAGACTGATTGAGAGAACCTGTGAAAACAACTTACGGCATGTTCATAAGCTGTTTTCAGCTTATTTTCATGACCTCTCTAAGATAGCTTATGAAAACGACTTATAGCTTATATGGGAAAAAGTAACTTTCTTTTATCTTTTGTTATAGAAATGATTTATACATAAGCGCTTATCATCAGTTTATGTTATAAGCTGGAAATTAACTGTTCATCCAAACATTGGGACAGTTTTTATCTTTTGTTTTTGGCCATATTGTTTTGGTTTGACATGTTTTTCACATTATTAGTTTGTCTTTGCTTTTTTGTGTTTTGGACAGTTTTTATTTGTCGTTGTTGGCTTTATTGTTTTGGTTTGACATGTTTTTTCACATTATTAGTTTGTCTTTGCTTTTTTGTGTGTGGAGATTTGCAGAGATACGTGGCTTTGAAAGTTCAGAAGAGTGCTCAGCATTACACAGAGGCTGCCCTGGATGAGATAACGATTTTGCAACAGATTGCGGAGGGAGACACTGATGATAAAAAATGTGTGGTCAAGCTTTTAGACCATTTCAAGCATTCTGGTCCAAATGGACAGCATGTTTGTATGGTTTTTGAGTACCTTGGGGATAACCTATTAACTCTTATTAAGTATAGTGATTATCACGGATTGCCTATCAATATGGTTAAAGAGATATGCTTTCATATTTTGGTTGGATTGGATTACTTACATAAGCAGCTTTCTATCATACATACTGACTTAAAACCCGAAAATATCCTTCTCTTATCAACAATTGATCCGTCTAAGGATCCCAGGAAATCTGGTGCTCCTCTTATTCTTCCTAACAGTAAAGACAAGACTATGCTGGAGTCAACGACTGCAAGAGACACTAAAACATCAAATGGAGATTTTATTAAGAATCATAAGAAAAATATTAAGAGAAAAGCCAAGCAAGCAGCTCATGGATGTGCGGAGAAGGAGGCATCTGAAGATGGTAATCATGAAACCTCTGGTGCTGTAGAATCATCTCCGAATGCAAGTTCTGCAAGAGAACAAGCTTCTAGTTCTGCTGGCACTAGTAGGTTATCAGATGCGGATGGAATGAAGTCAAAAGAGCAGGGCAACAGAAGAGGAAGCCGCACAGTGAGACAGAAACTGCTTGCCTCAGCTGATGTCAAGTGCAAGTTAGTTGACTTTGGTAATGCTTGCTGGACATATAAACAGTTTACAAATGATATTCAGACAAGACAGTATCGGTGCCCAGAGGTTATCCTTGGATCAAAATATTCTACATCTGCGGATCTTTGGTCATTTGCTTGCATATGTTTTGAGCTTGCAACTGGAGATGTATTATTTGATCCTCATAGTGGTGACAACTTTGATAGGGACGAGGTAAGAATATTTTTATTTACGTATTTAGACGTTCTATGCTTTTATGTCATCATTCCTACTCTACATAGCGAAAATATTATTTATGTGTTAATAGGTTGCTGGAATTGATTAATTGTATGGCTGCTGTGTTTTATTTAGTTGGTCACGTTGAAAGGATTATCTATGTGTAAACTTTTCCCCGTCTAAATTTTTGAAGGTTTTAATAAAACAACACATACAGATACACTACTTGATGTAAGACAGAAATTCACATTTTAACGGATCCTGTAATACAAAGCTCTAATATCATAAAAACCCCAATTAAACCACTCACTGAAGCAAAACCCCTATGCTGGAATAGCATTTTTTAAAACCACCGTTAACCGAAAACTATAATTTTAACTATTTATGAATTGGGAATTGACTAAATATCATGGAATGGTACACAGAGCCAGGGTGCGCATCAGAATCATGTATGGAGCTTACTGAATGATATGTATGCTGCTTTACATTTTATGTAACATCCCATGCCTTATTCATAATGTTGGCCTTTTCACGTTTTCTTGTTTATATGAGGGGACTTTTGTTGTGAAGATGACGTGTTGGCCGCATATAACTGTTACTGGCAACATTGATTGTGGAGAATTTTGAAGCATAAGCTGACTATCTCAACTGTTAAACATGAATAATGAGTGCTGGAAGTTTCTAATTCAATTTGTATATTAAAGAATCTGCTTAAATTTTTATTTTTGTTGTAAAAAATGAGTTTTAGAAGAGGGGAAGAAAAAATCTCAAGAGACAATAGGCATTAGGCCGTCTTCTAAAACAGAGATAGAAAAGGGAATTTTTTTTCTTTGAATTTCACTACAGAAAAGTTACCCAGTCTTGATAGAAAGTAGAAACAATGTTATAAAGATGACCCTCGCCAAACATCAAAGAAAAGTCAAATATAAATTCTGTCAAAAAGGTACATGAGCTAAAATCATTCTTTTACAAAGGCAGAGTCCATGTGTTTCCACGATTAATCATCACATTTCTAGCAATAATGATGTCAATAGGGAGTGTTTTGATGAGTTTGTAATAAAACATAACTGTAAGTACCAGAACGGGAGACTATTCAATTACAAATGTGTGCAATTAATGATCTTTTATACATTATCCTTTTACAATGTCTTGAAGACTTTCAGGATAAGAACCTACCTGAATTTATCTATTAGATGACCTTATTATGGTTAATGAGACAAATAGAGAATTGATGCCATAGTTGGAAACATGGAAAAATCTTTATTTCTCAAGGTTTTCAACAAACCTAAAAAGCTCTATTATGAGGTGCAAGCTTAGTTATGGGTGTATAATGGGATGTAATTAAGGTGGCAGGTAATGATAAGAAGCACATAAGGTTAAACACTTTCTTACTCTGCTTCAGTGGCAGTAAGATTTTCCTATATAATTAGGGTGATTGCATGTTGATTGGTGAAAAGCATGTTAATTTATGTGATCTGAAAAAAAACACTAGTATGGGTTCTATATAAAAAATAGTACTGATACTACACTATAATGATAATTAAGAAACCACATTTCCATGTACTGAAATTAAGGTTGAGTGGGTAGTGACACAAAATGAATAGAAGATGAATGATGCAAATTTTAGGCTTGCATTTTATAAAGCCCAGACTTTAGGTATGCATTTGATGATTCTTGGCCTCGGTTTTCTCTGATGCTTGGAGCAGTTTCTGATAAGATCACAGTTTGGCATAAGCAAGGAGGGTAAAGTTTTATGGCCTTGTGTTTTGTATGCTGCCACACATTCCTTATAGTAAAAAGCATGGTTATTAACCACACATTCTCAACGTGGAAAGGGATAGGCGGCCGTCTTGTTTTACAAGTTGAGGCTGACCAGAAACAAAAACCATGAGAGGCAGACCAGAAACAAGTCGAGGCAACTGTCCTGAACAAGATGCAGACGCCTATTCTACTATCCCAAGTCCTTCGTAACTATGTTGCCAGAATTTCACAATTCACAATTTAATTTTGCGAGTCATCATCCTTTGAGGGAGTCAAAATGGTGGATAAATTTTTATCCTGTAATTCTAGTCAATTTGGGAAATGATTTGGGTCAGACTTGAGATTCAATTGGAAAATCCTGATTGATTCCCCCATCCCTATTTATTAATTTGTAAGCGAAAGAGAGGGGAAGGAGGAAAAGCCCTTCTATTTCATATTTCAAAACAATCAATCAAAACTAAATTAGCCTTCCCCCCACAAATGACTTCCCACCATTCTCTTCTAAATGGATTTTATGGAAATTTTGATTTCCCAGCCTGATTGGATAAGGCATGGTTGTTGTTGATGCCCATCACTGTCTTGAGAATCCAACTTTATTATCTTCCTTTAGTTTAACGGGTAATGGCAGCAATCCTCTATTTCTAGAATGGAATGCATAAATCTTGATTAGCTCATAGCTTGTTGTACTTCTAACATCTTGGTTTTGAACTGTAATGATTGTCACCTTTTAAAATCATTTTAAGTTCGAAAAGATGATTTTTATACTACGGATAACATTTAGTGACAAATATTATGGTCCATGAGATGGAAAACCAACTTTATAGTTTGCAATTGGACAACCATGCCTGGAAAAAAAAACTGTCCAAACAAGGATGTTGTGTGATGTCTGTTAGTTAACTACCTGAACTGAGTATTAGATAAAGTAAAATTTGAACTTACTAATGGATAAAAACACACTTACACCAAAATATATCATGCAAATCAATTACTTCAGGCTGATTATTTTTTTGTTGAGGAAATGGTTTGGTTTGTGTCCTGTTTTTTAATGCTACTTACTGGATGTGTGCTTATGCATTCCAGTTTCAACATAATAACTTGCTTTGCTGGAGAGTGGCCATGTTGATTCTTTTGTTATGTTGGTTCTATCTTTAATTAATACTAACATTTTGAAATAATTTTTACTCGCATTTGTGCTTTGGTTATGGTATTAATGTCTGATGTAAGCTTGCTCTATCTTTAATTTATCTCAGGACCACTTAGCATTAATGATGGAACTTCTTGGAATGATGCCGCGGAAGGTAATAAATTTCTTCCATCCATTTCTTTTCATTTATGATCATTAGTTTGCAGTTAACTTGAGTCTGGATTATAATTCTCAGATCGCACTAGGGGGGCGTTATTCCCGGGATTTCTTCAATAGATATGGTGATTTGAGACATATCCGTCGGCTGCGATTCTGGCCCTTAAATAAAGTGCTTATGGAGAAGTACGATTTTAGTGAGAAAGATGCAAGTGACATGAGTGACTTTTTGGTTTCTATCCTTGACTTTGTTCCTGAGAAACGACCTACAGCCGGTCAATGCCTGCTACATCCGTGGATGAATGTAGGTCCCCGTCTTTTGGAGCCATCAATGCCGTCTTCTAATCACAACCCTGGTGCTGAAACTGCTACTTCTGACCAGAAGAACAAGGACAAAGATGAGAGGGAGGCCATGGAGGCTGGAATTGGAAACATTGCTATCAATTCAGATTTTAAACCACTCATGCATTCTCCATCAAAGAAAGTATTCCAAGGCAGCCGCAAGTAG
Protein sequence

>MS.gene034952.t1

MGGGHDDTTTESSDFTSEDEGTEDYRRGGYHAVRIGDTFSSGRYVVQSKLGWGHFSTVWLAWDSHHSRYVALKVQKSAQHYTEAALDEITILQQIAEGDTDDKKCVVKLLDHFKHSGPNGQHVCMVFEYLGDNLLTLIKYSDYHGLPINMVKEICFHILVGLDYLHKQLSIIHTDLKPENILLLSTIDPSKDPRKSGAPLILPNSKDKTMLESTTARDTKTSNGDFIKNHKKNIKRKAKQAAHGCAEKEASEDGNHETSGAVESSPNASSAREQASSSAGTSRLSDADGMKSKEQGNRRGSRTVRQKLLASADVKCKLVDFGNACWTYKQFTNDIQTRQYRCPEVILGSKYSTSADLWSFACICFELATGDVLFDPHSGDNFDRDEDHLALMMELLGMMPRKIALGGRYSRDFFNRYGDLRHIRRLRFWPLNKVLMEKYDFSEKDASDMSDFLVSILDFVPEKRPTAGQCLLHPWMNVGPRLLEPSMPSSNHNPGAETATSDQKNKDKDEREAMEAGIGNIAINSDFKPLMHSPSKKVFQGSRK