AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene86544

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene86544.t1 MTR_5g024270 99.327 446 3 0 1 446 1 446 0.0 924
MS.gene86544.t1 MTR_8g073250 82.511 446 74 2 1 446 1 442 0.0 743
MS.gene86544.t1 MTR_5g024270 98.830 342 4 0 1 342 1 342 0.0 706
MS.gene86544.t1 MTR_1g061690 53.066 473 162 6 2 415 8 479 1.59e-174 500
MS.gene86544.t1 MTR_2g084555 48.450 516 186 5 6 442 8 522 4.45e-169 486
MS.gene86544.t1 MTR_4g056390 51.496 468 162 5 12 415 13 479 2.24e-168 484
MS.gene86544.t1 MTR_3g109390 31.266 387 196 10 37 414 51 376 8.58e-44 157
MS.gene86544.t1 MTR_3g109390 31.266 387 196 10 37 414 73 398 1.49e-43 157
MS.gene86544.t1 MTR_3g109390 31.525 387 193 11 37 414 73 396 6.02e-43 156
MS.gene86544.t1 MTR_3g109390 31.034 377 190 10 47 414 70 385 1.29e-41 152
MS.gene86544.t1 MTR_3g109390 31.034 377 190 10 47 414 92 407 3.27e-41 151
MS.gene86544.t1 MTR_3g076540 27.970 404 219 10 21 414 78 419 3.86e-38 143
MS.gene86544.t1 MTR_3g076540 28.351 388 207 9 37 414 11 337 9.72e-38 140
MS.gene86544.t1 MTR_3g109390 32.188 320 156 8 37 356 73 331 1.62e-37 139
MS.gene86544.t1 MTR_4g104620 28.429 401 215 11 21 411 82 420 4.25e-37 140
MS.gene86544.t1 MTR_3g076540 28.084 381 203 9 44 414 1 320 3.29e-36 136
MS.gene86544.t1 MTR_4g104620 28.760 379 199 10 43 411 9 326 6.05e-36 135
MS.gene86544.t1 MTR_3g076540 27.427 412 219 11 21 414 78 427 1.41e-35 137
MS.gene86544.t1 MTR_4g104620 28.571 378 199 10 44 411 1 317 2.02e-35 134
MS.gene86544.t1 MTR_3g086530 28.655 342 179 9 21 358 77 357 1.62e-34 132
MS.gene86544.t1 MTR_3g086530 28.117 409 216 12 21 415 77 421 1.67e-34 134
MS.gene86544.t1 MTR_3g086530 28.415 366 185 11 64 415 2 304 3.11e-30 119
MS.gene86544.t1 MTR_3g086530 28.571 287 153 8 21 306 77 312 3.77e-28 114
MS.gene86544.t1 MTR_5g082700 24.495 396 205 11 29 414 394 705 2.23e-23 103
MS.gene86544.t1 MTR_3g086530 28.013 307 149 9 123 415 1 249 6.54e-22 95.1
MS.gene86544.t1 MTR_8g070930 39.310 145 82 3 37 180 138 277 1.27e-21 98.6
MS.gene86544.t1 MTR_8g070930 39.450 109 58 3 254 361 285 386 1.74e-13 73.2
MS.gene86544.t1 MTR_6g074905 31.361 169 101 5 252 414 1005 1164 4.48e-19 90.9
MS.gene86544.t1 MTR_0349s0030 31.176 170 102 5 252 415 125 285 6.81e-19 87.0
MS.gene86544.t1 MTR_5g082700 34.194 155 93 3 29 179 394 543 5.75e-16 80.5
MS.gene86544.t1 MTR_5g082700 33.987 153 92 3 29 177 394 541 7.22e-16 80.5
MS.gene86544.t1 MTR_1g111180 34.615 182 85 8 254 414 822 990 1.27e-14 77.0
MS.gene86544.t1 MTR_1g111180 30.814 172 100 5 11 177 657 814 4.22e-14 75.1
MS.gene86544.t1 MTR_1g111180 34.615 182 85 8 254 414 823 991 1.31e-14 77.0
MS.gene86544.t1 MTR_1g111180 30.814 172 100 5 11 177 658 815 4.30e-14 75.1
MS.gene86544.t1 MTR_6g074870 30.645 124 75 3 252 371 236 352 7.90e-13 69.7
MS.gene86544.t1 MTR_6g074750 43.333 60 32 1 252 309 54 113 7.02e-12 62.8
MS.gene86544.t1 MTR_3g110180 31.250 144 87 5 34 177 5 136 3.33e-11 65.5
MS.gene86544.t1 MTR_3g110180 31.250 144 87 5 34 177 5 136 3.40e-11 65.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene86544.t1 AT4G35500 73.094 446 108 4 1 443 1 437 0.0 656
MS.gene86544.t1 AT2G17530 75.730 445 97 4 1 443 1 436 0.0 649
MS.gene86544.t1 AT2G17530 75.730 445 97 4 1 443 1 436 0.0 649
MS.gene86544.t1 AT4G35500 70.917 447 117 5 1 443 1 438 0.0 631
MS.gene86544.t1 AT2G17530 79.592 343 67 3 1 341 1 342 0.0 519
MS.gene86544.t1 AT3G53030 50.202 496 180 7 12 442 16 509 1.33e-170 489
MS.gene86544.t1 AT5G22840 50.753 465 172 5 4 415 11 471 1.54e-163 472
MS.gene86544.t1 AT3G44850 51.613 465 163 5 12 415 19 482 1.55e-163 472
MS.gene86544.t1 AT4G32660 30.370 405 208 12 21 414 47 388 2.10e-42 154
MS.gene86544.t1 AT4G32660 30.370 405 208 12 21 414 55 396 2.31e-42 154
MS.gene86544.t1 AT4G24740 29.310 406 211 12 21 414 44 385 6.11e-39 145
MS.gene86544.t1 AT4G24740 29.310 406 211 12 21 414 82 423 1.18e-38 145
MS.gene86544.t1 AT4G32660 31.157 337 170 10 21 356 55 330 2.79e-38 142
MS.gene86544.t1 AT4G24740 29.504 383 195 11 44 414 1 320 1.83e-37 139
MS.gene86544.t1 AT4G24740 29.504 383 195 11 44 414 1 320 1.83e-37 139
MS.gene86544.t1 AT4G24740 29.504 383 195 11 44 414 1 320 1.83e-37 139
MS.gene86544.t1 AT3G53570 29.095 409 213 14 21 415 99 444 9.75e-36 137
MS.gene86544.t1 AT3G53570 29.095 409 213 14 21 415 99 444 9.75e-36 137
MS.gene86544.t1 AT3G53570 29.095 409 213 14 21 415 99 444 9.75e-36 137
MS.gene86544.t1 AT3G53570 29.095 409 213 14 21 415 85 430 1.27e-35 137
MS.gene86544.t1 AT3G53570 29.095 409 213 14 21 415 85 430 1.27e-35 137
MS.gene86544.t1 AT4G24740 30.530 321 164 9 21 341 82 343 1.17e-34 132
MS.gene86544.t1 AT4G24740 30.872 298 148 8 44 341 1 240 2.04e-33 126
MS.gene86544.t1 AT4G32660 30.814 344 165 12 82 414 3 284 1.00e-32 125
MS.gene86544.t1 AT4G24740 30.420 286 147 8 21 306 82 315 1.19e-28 115
MS.gene86544.t1 AT5G35980 38.000 150 87 3 37 185 86 230 7.20e-22 99.4
MS.gene86544.t1 AT5G35980 42.424 99 50 2 254 352 232 323 4.78e-15 78.2
MS.gene86544.t1 AT5G35980 38.000 150 87 3 37 185 121 265 7.41e-22 99.4
MS.gene86544.t1 AT5G35980 42.424 99 50 2 254 352 267 358 4.90e-15 78.2
MS.gene86544.t1 AT5G35980 38.000 150 87 3 37 185 121 265 7.93e-22 99.0
MS.gene86544.t1 AT5G35980 42.424 99 50 2 254 352 267 358 5.53e-15 77.8
MS.gene86544.t1 AT4G24740 29.811 265 117 8 162 414 10 217 3.47e-21 92.0
MS.gene86544.t1 AT4G24740 29.811 265 117 8 162 414 10 217 3.47e-21 92.0
MS.gene86544.t1 AT1G73460 32.941 170 99 5 252 415 1001 1161 4.87e-21 97.1
MS.gene86544.t1 AT1G73460 32.258 155 96 3 29 179 849 998 2.06e-13 73.2
MS.gene86544.t1 AT1G73460 32.941 170 99 5 252 415 1001 1161 4.87e-21 97.1
MS.gene86544.t1 AT1G73460 32.258 155 96 3 29 179 849 998 2.06e-13 73.2
MS.gene86544.t1 AT1G73450 32.941 170 99 5 252 415 984 1144 4.98e-21 97.1
MS.gene86544.t1 AT1G73450 32.258 155 96 3 29 179 832 981 2.11e-13 73.2
MS.gene86544.t1 AT2G40120 24.311 399 212 12 29 419 252 568 1.36e-20 94.7
MS.gene86544.t1 AT3G17750 31.953 169 100 5 252 414 970 1129 8.88e-18 86.7
MS.gene86544.t1 AT3G17750 31.953 169 102 5 15 179 808 967 2.02e-13 73.2
MS.gene86544.t1 AT3G53640 32.961 179 93 6 254 414 470 639 1.11e-16 83.2
MS.gene86544.t1 AT3G53640 31.395 172 99 5 11 177 305 462 2.31e-12 69.3
MS.gene86544.t1 AT1G13350 31.395 172 99 5 11 177 424 581 3.74e-14 75.1
MS.gene86544.t1 AT1G13350 30.168 179 98 6 254 414 589 758 1.08e-13 73.9
MS.gene86544.t1 AT1G13350 31.395 172 99 5 11 177 451 608 4.31e-14 75.1
MS.gene86544.t1 AT1G13350 30.168 179 98 6 254 414 616 785 1.28e-13 73.6
MS.gene86544.t1 AT1G13350 31.395 172 99 5 11 177 497 654 5.24e-14 74.7
MS.gene86544.t1 AT1G13350 30.168 179 98 6 254 414 662 831 1.10e-13 73.9
MS.gene86544.t1 AT3G25840 31.638 177 97 6 254 414 502 670 7.76e-14 74.3
MS.gene86544.t1 AT3G25840 30.233 172 101 5 11 177 337 494 2.92e-12 69.3
MS.gene86544.t1 AT3G12690 26.224 286 178 9 42 315 189 453 7.97e-14 73.9
MS.gene86544.t1 AT3G12690 26.224 286 178 9 42 315 189 453 7.97e-14 73.9
MS.gene86544.t1 AT3G12690 26.224 286 178 9 42 315 189 453 7.97e-14 73.9
MS.gene86544.t1 AT3G25840 31.638 177 97 6 254 414 764 932 1.88e-13 73.2
MS.gene86544.t1 AT3G25840 30.233 172 101 5 11 177 599 756 2.71e-12 69.7
MS.gene86544.t1 AT3G20830 23.810 294 188 10 40 320 23 293 7.53e-12 67.4

Find 115 sgRNAs with CRISPR-Local

Find 230 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AGATGCAAGATTGTCGATTT+TGG 0.222958 5.1:-14962271 MS.gene86544:CDS
ACCGGCATGGTGATCTAAAA+AGG 0.287476 5.1:-14961222 MS.gene86544:CDS
ATAACCTTGTCCACCACCTT+TGG 0.312925 5.1:+14962087 None:intergenic
TGCATGGTCCTTGAGTTTCT+TGG 0.316560 5.1:-14962673 MS.gene86544:CDS
TAACCTTGTCCACCACCTTT+GGG 0.320820 5.1:+14962088 None:intergenic
CCTCAGTCCGTTCTAAAGTT+GGG 0.329112 5.1:+14962446 None:intergenic
ATGTCTTGTTCTTCTTCATC+AGG 0.333473 5.1:-14964176 MS.gene86544:CDS
AGTTCAGCCAGGGGTGTTGC+AGG 0.337595 5.1:+14961056 None:intergenic
ACTTTCCTACCTTGATTTGA+AGG 0.337930 5.1:+14960963 None:intergenic
GGGGAGAGTCCGGATCTAAA+AGG 0.349666 5.1:+14962466 None:intergenic
TCCGGATCTAAAAGGGTCTT+TGG 0.351019 5.1:+14962474 None:intergenic
ATGCAATGGTGCTGCCCATT+TGG 0.353666 5.1:+14962691 None:intergenic
TGGGAGTGTACTCACCTTCC+GGG 0.386673 5.1:+14961344 None:intergenic
GCGTGCAGTTGCTAAAATAT+CGG 0.390478 5.1:-14962365 MS.gene86544:CDS
GATTCATTTCTCATTTCATT+TGG 0.391464 5.1:+14961019 None:intergenic
GCTTAAAGTTATCAATCAAT+TGG 0.393123 5.1:+14962722 None:intergenic
ATCTCTCTAACTTTATTCAA+TGG 0.394338 5.1:+14962604 None:intergenic
TGCTCAGAGGAAACTTGGTT+GGG 0.402208 5.1:-14964060 MS.gene86544:CDS
GATTACTTGCATAGTGAACT+TGG 0.411710 5.1:-14962556 MS.gene86544:CDS
CCCTCAGTCCGTTCTAAAGT+TGG 0.414075 5.1:+14962445 None:intergenic
GGGGTCAATTCTCCACCGTT+TGG 0.419364 5.1:-14964040 MS.gene86544:CDS
TTTAAGCACACAGGTCCAAA+TGG 0.425606 5.1:-14962706 MS.gene86544:CDS
AAGTGCGGCCGAGTTCGTTC+AGG 0.428944 5.1:-14962815 MS.gene86544:CDS
TGATTCATTGCAGTTCAGCC+AGG 0.429978 5.1:+14961045 None:intergenic
TTCTAAAGTTGGGGAGAGTC+CGG 0.433511 5.1:+14962456 None:intergenic
GGATCATCTTGCCTTGATGA+TGG 0.437810 5.1:-14961385 MS.gene86544:CDS
TTACAAGTCTTATTGAGAAA+AGG 0.437935 5.1:-14962405 MS.gene86544:CDS
CCAGACTTCAGTATAACTTC+AGG 0.439622 5.1:+14962187 None:intergenic
TGTGGATTGCAGATTGCAAT+TGG 0.442014 5.1:-14961271 MS.gene86544:intron
AAATGAATCTACTGTGGAAA+AGG 0.456827 5.1:-14961005 MS.gene86544:CDS
TATATTGCTCAGAGGAAACT+TGG 0.462401 5.1:-14964065 MS.gene86544:CDS
ACAACAAACTTTGAATTCGA+TGG 0.467683 5.1:+14962745 None:intergenic
TTGTTCTTCTTCATCAGGAT+CGG 0.468336 5.1:-14964171 MS.gene86544:CDS
GGCAATACCTGCAACACCCC+TGG 0.477580 5.1:-14961063 MS.gene86544:CDS
TTCTTTCATCCATTGCTGAT+GGG 0.477679 5.1:-14962771 MS.gene86544:CDS
TCAATGGAAGACCTTTGTAA+TGG 0.483257 5.1:+14962620 None:intergenic
CGTGCAGTTGCTAAAATATC+GGG 0.483843 5.1:-14962364 MS.gene86544:CDS
GGAAGAACAGCTTCAATTGA+AGG 0.486531 5.1:-14962343 MS.gene86544:CDS
AACTCCTCGGAAAGATGCCC+CGG 0.493756 5.1:-14961362 MS.gene86544:CDS
TTGCTCAGAGGAAACTTGGT+TGG 0.496479 5.1:-14964061 MS.gene86544:CDS
CAGACTTCAGTATAACTTCA+GGG 0.503743 5.1:+14962188 None:intergenic
CCTGAAGTTATACTGAAGTC+TGG 0.506057 5.1:-14962187 MS.gene86544:CDS
GTTCTTTCATCCATTGCTGA+TGG 0.506669 5.1:-14962772 MS.gene86544:CDS
GATTCATTGCAGTTCAGCCA+GGG 0.507004 5.1:+14961046 None:intergenic
ATGCCGGTCAAAGTAATCCT+TGG 0.507357 5.1:+14961237 None:intergenic
TCCGAGGAGTTCCATCATCA+AGG 0.521134 5.1:+14961374 None:intergenic
TCTTTCATCCATTGCTGATG+GGG 0.521529 5.1:-14962770 MS.gene86544:CDS
ACAGCTTCAATTGAAGGAAG+AGG 0.522518 5.1:-14962337 MS.gene86544:CDS
CTCAGTCCGTTCTAAAGTTG+GGG 0.526561 5.1:+14962447 None:intergenic
AATCCAAGGATTACTTTGAC+CGG 0.528653 5.1:-14961240 MS.gene86544:CDS
TATGAGCAACCTTCAAATCA+AGG 0.531115 5.1:-14960972 MS.gene86544:CDS
CAACAAACTTTGAATTCGAT+GGG 0.538001 5.1:+14962746 None:intergenic
GGGAGAGTCCGGATCTAAAA+GGG 0.543496 5.1:+14962467 None:intergenic
TTATTTACACCCAAAGGTGG+TGG 0.545111 5.1:-14962097 MS.gene86544:CDS
TGCAGGTATTGCCGTGCAGT+TGG 0.547161 5.1:+14961073 None:intergenic
GGATTGCAGATTGCAATTGG+TGG 0.549667 5.1:-14961268 MS.gene86544:intron
ATGAGGGATTTGAGTCCTAT+CGG 0.552054 5.1:-14964139 MS.gene86544:CDS
TTAAGCACACAGGTCCAAAT+GGG 0.558245 5.1:-14962705 MS.gene86544:CDS
TCAATCAGCAATTTGTCAAG+TGG 0.561218 5.1:+14961178 None:intergenic
CTGATCAATTCGCGGGTGGG+AGG 0.561858 5.1:-14964088 MS.gene86544:CDS
AAGGGCAGCCTGAACGAACT+CGG 0.565101 5.1:+14962807 None:intergenic
GATATGTTATTTACACCCAA+AGG 0.565138 5.1:-14962103 MS.gene86544:CDS
CGATGGGTCCCCATCAGCAA+TGG 0.566770 5.1:+14962762 None:intergenic
ACACCCAAAGGTGGTGGACA+AGG 0.567008 5.1:-14962091 MS.gene86544:CDS
TAGAGTCGCTGATCAATTCG+CGG 0.570049 5.1:-14964096 MS.gene86544:CDS
CCTTCCGGGGCATCTTTCCG+AGG 0.576947 5.1:+14961358 None:intergenic
AAGTCTAGTAGAAATATTGA+CGG 0.578614 5.1:-14962304 MS.gene86544:CDS
TTCTTCTTCATCAGGATCGG+AGG 0.578889 5.1:-14964168 MS.gene86544:CDS
ATTCCTTCTCTGTAGACATG+TGG 0.579312 5.1:-14962162 MS.gene86544:CDS
ACAAGGTTATAGCGAGGATG+AGG 0.579359 5.1:-14962074 MS.gene86544:intron
AAGGATTACTTTGACCGGCA+TGG 0.580864 5.1:-14961235 MS.gene86544:CDS
ACTGTGGAAAAGGTTAATGT+TGG 0.582824 5.1:-14960995 MS.gene86544:CDS
ATCAAATACAGCCATTACAA+AGG 0.586492 5.1:-14962631 MS.gene86544:CDS
ATTCATTGCAGTTCAGCCAG+GGG 0.586651 5.1:+14961047 None:intergenic
AAAGAACGTTGATCTCATGA+AGG 0.589855 5.1:+14962788 None:intergenic
AGGATCGGAGGAAGATGATG+AGG 0.592202 5.1:-14964156 MS.gene86544:CDS
GATCTAAAAGGGTCTTTGGA+AGG 0.592260 5.1:+14962478 None:intergenic
GTCGCTGATCAATTCGCGGG+TGG 0.594980 5.1:-14964092 MS.gene86544:CDS
TCGCTGATCAATTCGCGGGT+GGG 0.599945 5.1:-14964091 MS.gene86544:CDS
ATTGATAACTTTAAGCACAC+AGG 0.601668 5.1:-14962715 MS.gene86544:CDS
TGTAAATAACATATCTCCAG+TGG 0.603326 5.1:+14962111 None:intergenic
CGGACTGAGGGAAACACAAA+CGG 0.603582 5.1:-14962433 MS.gene86544:CDS
TTTCAGGCTTTAAGTCTGTG+TGG 0.603818 5.1:+14962527 None:intergenic
AGTCTAGTAGAAATATTGAC+GGG 0.604903 5.1:-14962303 MS.gene86544:CDS
AAATCAAGGTAGGAAAGTGA+AGG 0.604919 5.1:-14960958 None:intergenic
GCTCAGAGGAAACTTGGTTG+GGG 0.605080 5.1:-14964059 MS.gene86544:CDS
GGGAGTGTACTCACCTTCCG+GGG 0.605870 5.1:+14961345 None:intergenic
AATTGGTGGAGCTCAATCCA+AGG 0.608972 5.1:-14961254 MS.gene86544:CDS
ATGGTATCCACCTTTCCGAT+AGG 0.609356 5.1:+14964124 None:intergenic
AGACCACATGTCTACAGAGA+AGG 0.609410 5.1:+14962159 None:intergenic
AAATGGGCAGCACCATTGCA+TGG 0.610699 5.1:-14962689 MS.gene86544:CDS
AGAGTCGCTGATCAATTCGC+GGG 0.611441 5.1:-14964095 MS.gene86544:CDS
TTTGAGTCCTATCGGAAAGG+TGG 0.621569 5.1:-14964131 MS.gene86544:CDS
AGTATCATAAGCAAGCCAAA+CGG 0.632450 5.1:+14964025 None:intergenic
GAAACTCAAGGACCATGCAA+TGG 0.636117 5.1:+14962677 None:intergenic
CCCAACTTTAGAACGGACTG+AGG 0.637641 5.1:-14962446 MS.gene86544:CDS
AGCAACCTTCAAATCAAGGT+AGG 0.638879 5.1:-14960968 MS.gene86544:CDS
GACTCTCCCCAACTTTAGAA+CGG 0.639593 5.1:-14962453 MS.gene86544:CDS
ATGTTATTTACACCCAAAGG+TGG 0.642360 5.1:-14962100 MS.gene86544:CDS
ATCATAAGCAAGCCAAACGG+TGG 0.646324 5.1:+14964028 None:intergenic
CCTCGGAAAGATGCCCCGGA+AGG 0.647925 5.1:-14961358 MS.gene86544:intron
AAGAACGTTGATCTCATGAA+GGG 0.648752 5.1:+14962789 None:intergenic
GGATTTGAGTCCTATCGGAA+AGG 0.650525 5.1:-14964134 MS.gene86544:CDS
AGCTATCACCAAGAAACTCA+AGG 0.651636 5.1:+14962665 None:intergenic
GGATCGGAGGAAGATGATGA+GGG 0.654053 5.1:-14964155 MS.gene86544:CDS
GCCTTGATGATGGAACTCCT+CGG 0.654637 5.1:-14961375 MS.gene86544:CDS
GATCAGCGACTCTAACAGCA+TGG 0.659062 5.1:+14964105 None:intergenic
ATAAGAAGAACATACAGAGG+TGG 0.667158 5.1:+14964001 None:intergenic
AATGAGAAATGAATCTACTG+TGG 0.670154 5.1:-14961011 MS.gene86544:CDS
CCAACTTTAGAACGGACTGA+GGG 0.670163 5.1:-14962445 MS.gene86544:CDS
AGACTTCAGTATAACTTCAG+GGG 0.688658 5.1:+14962189 None:intergenic
ACTGAGGGAAACACAAACGG+TGG 0.700333 5.1:-14962430 MS.gene86544:CDS
TGGTGGACAAGGTTATAGCG+AGG 0.709203 5.1:-14962080 MS.gene86544:CDS
TCTCAAAATCCAGAAAAGTG+CGG 0.715435 5.1:-14962830 MS.gene86544:CDS
GTGGGAGGTATATTGCTCAG+AGG 0.720598 5.1:-14964073 MS.gene86544:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATTTCAAAAATATTCTATAT+GGG - chr5.1:14962157-14962176 MS.gene86544:CDS 10.0%
!!! CAAATAATATAAGTTTTTAT+AGG + chr5.1:14963695-14963714 None:intergenic 10.0%
!! AAATTAGAAAAAGATATTAG+TGG + chr5.1:14962258-14962277 None:intergenic 15.0%
!! AATCATGAAAAACAAAAAAT+AGG + chr5.1:14961181-14961200 None:intergenic 15.0%
!! ATGATCATAAAAAGAATAAA+AGG + chr5.1:14963610-14963629 None:intergenic 15.0%
!! GATTTCAAAAATATTCTATA+TGG - chr5.1:14962156-14962175 MS.gene86544:CDS 15.0%
!!! AAACTTATATTATTTGTTAC+TGG - chr5.1:14963699-14963718 MS.gene86544:intron 15.0%
!!! ATAATTTTAAAAATTATCGC+TGG + chr5.1:14962226-14962245 None:intergenic 15.0%
!!! ATTTGTAAATACATTTTGAT+TGG - chr5.1:14962554-14962573 MS.gene86544:CDS 15.0%
!!! CATTTCTAAAATAAATATTG+TGG - chr5.1:14963830-14963849 MS.gene86544:intron 15.0%
!!! TTTTTTTGTTATTGAATGAA+TGG - chr5.1:14961329-14961348 MS.gene86544:intron 15.0%
!!! ACAATTGGTTTGTTTTATTT+GGG - chr5.1:14962001-14962020 MS.gene86544:intron 20.0%
!!! TAAATACATTTTGATTGGTT+TGG - chr5.1:14962559-14962578 MS.gene86544:CDS 20.0%
! AAGTCTAGTAGAAATATTGA+CGG - chr5.1:14962833-14962852 MS.gene86544:CDS 25.0%
! AATTGGAATAGCTGAAAATT+GGG - chr5.1:14961432-14961451 MS.gene86544:intron 25.0%
! ACATGAATAAAAGATGAACT+TGG + chr5.1:14962126-14962145 None:intergenic 25.0%
! ACGTTAGAAACAAATACATT+TGG - chr5.1:14961743-14961762 MS.gene86544:intron 25.0%
! AGACATATTAGAATGATGTT+TGG - chr5.1:14961767-14961786 MS.gene86544:intron 25.0%
! ATCTCTCTAACTTTATTCAA+TGG + chr5.1:14962536-14962555 None:intergenic 25.0%
! ATTAATAAAAAGAGACACAG+GGG - chr5.1:14963200-14963219 MS.gene86544:intron 25.0%
! ATTCCAATTCCAACAAAAAA+AGG + chr5.1:14961421-14961440 None:intergenic 25.0%
! CATAAAAACTCTATCGTTTA+GGG + chr5.1:14963492-14963511 None:intergenic 25.0%
! CATTAATAAAAAGAGACACA+GGG - chr5.1:14963199-14963218 MS.gene86544:intron 25.0%
! CCAACAAAAAAAGGAATTAT+CGG + chr5.1:14961412-14961431 None:intergenic 25.0%
! CTATATGGGTAAACAATTAT+GGG - chr5.1:14962171-14962190 MS.gene86544:CDS 25.0%
! CTTAAATTGTTGTATGCAAA+AGG - chr5.1:14963569-14963588 MS.gene86544:intron 25.0%
! CTTCATTAATCTAATCAAGA+TGG - chr5.1:14962052-14962071 MS.gene86544:intron 25.0%
! GAAACTTTGAATTTCATTCT+CGG + chr5.1:14963523-14963542 None:intergenic 25.0%
! GACAAAAACAATGTAACATA+AGG + chr5.1:14961486-14961505 None:intergenic 25.0%
! GATTCATTTCTCATTTCATT+TGG + chr5.1:14964121-14964140 None:intergenic 25.0%
! GCTTAAAGTTATCAATCAAT+TGG + chr5.1:14962418-14962437 None:intergenic 25.0%
! GGTTTAATATGTGAAAAAAC+TGG - chr5.1:14963156-14963175 MS.gene86544:intron 25.0%
! TAGGTTTATTAGCTCAAATT+TGG - chr5.1:14961276-14961295 MS.gene86544:intron 25.0%
! TATTGGTGCAAATTAACAAA+CGG - chr5.1:14961904-14961923 MS.gene86544:intron 25.0%
! TCATAAAAACTCTATCGTTT+AGG + chr5.1:14963493-14963512 None:intergenic 25.0%
! TCTATATGGGTAAACAATTA+TGG - chr5.1:14962170-14962189 MS.gene86544:CDS 25.0%
!! CTTTTTATGATCATGTTGAA+GGG - chr5.1:14963616-14963635 MS.gene86544:intron 25.0%
!! GAAAATAGAAGAATGTTTTC+AGG + chr5.1:14962629-14962648 None:intergenic 25.0%
!! TCTTTTTATGATCATGTTGA+AGG - chr5.1:14963615-14963634 MS.gene86544:intron 25.0%
!! TTTAAAAATTATCGCTGGTT+GGG + chr5.1:14962221-14962240 None:intergenic 25.0%
!! TTTTTCATGATTTTCACATG+TGG - chr5.1:14961189-14961208 MS.gene86544:CDS 25.0%
!!! ATTCCTTTTTTTGTTGGAAT+TGG - chr5.1:14961415-14961434 MS.gene86544:intron 25.0%
!!! GACAATTGGTTTGTTTTATT+TGG - chr5.1:14962000-14962019 MS.gene86544:intron 25.0%
!!! TTACAAGTCTTATTGAGAAA+AGG - chr5.1:14962732-14962751 MS.gene86544:CDS 25.0%
!!! TTGTTTGTTATGTTTTGTGT+AGG - chr5.1:14961257-14961276 MS.gene86544:CDS 25.0%
!!! TTTTAAAAATTATCGCTGGT+TGG + chr5.1:14962222-14962241 None:intergenic 25.0%
!!! TTTTTTTGCTGTCAAGATTT+AGG - chr5.1:14961643-14961662 MS.gene86544:intron 25.0%
AAACAATGTAACATAAGGTC+AGG + chr5.1:14961481-14961500 None:intergenic 30.0%
AAATGAATCTACTGTGGAAA+AGG - chr5.1:14964132-14964151 MS.gene86544:CDS 30.0%
AAGACTTGTGATACCATAAA+TGG - chr5.1:14961683-14961702 MS.gene86544:intron 30.0%
AATGAGAAATGAATCTACTG+TGG - chr5.1:14964126-14964145 MS.gene86544:CDS 30.0%
ACAACAAACTTTGAATTCGA+TGG + chr5.1:14962395-14962414 None:intergenic 30.0%
AGTATAAGAAGAACATACAG+AGG + chr5.1:14961142-14961161 None:intergenic 30.0%
AGTCTAGTAGAAATATTGAC+GGG - chr5.1:14962834-14962853 MS.gene86544:CDS 30.0%
ATATTAAAACAACAGTCTCC+TGG - chr5.1:14962079-14962098 MS.gene86544:CDS 30.0%
ATCAAATACAGCCATTACAA+AGG - chr5.1:14962506-14962525 MS.gene86544:CDS 30.0%
ATGAGAAATTGTTCAAAACC+AGG + chr5.1:14963458-14963477 None:intergenic 30.0%
ATTGGTGCAAATTAACAAAC+GGG - chr5.1:14961905-14961924 MS.gene86544:intron 30.0%
ATTTATGGTATCACAAGTCT+TGG + chr5.1:14961684-14961703 None:intergenic 30.0%
CAACAAACTTTGAATTCGAT+GGG + chr5.1:14962394-14962413 None:intergenic 30.0%
CATGTACCATTTATGTTTGT+TGG - chr5.1:14961558-14961577 MS.gene86544:intron 30.0%
CCATTAATAAAAAGAGACAC+AGG - chr5.1:14963198-14963217 MS.gene86544:intron 30.0%
GAATTGGAATAGCTGAAAAT+TGG - chr5.1:14961431-14961450 MS.gene86544:intron 30.0%
GGATATTAATCTTAGCAACA+GGG + chr5.1:14962105-14962124 None:intergenic 30.0%
GTACTTCCAACAAACATAAA+TGG + chr5.1:14961567-14961586 None:intergenic 30.0%
TAGGTTCTATAGAAATAGCA+TGG + chr5.1:14963676-14963695 None:intergenic 30.0%
TGGATATTAATCTTAGCAAC+AGG + chr5.1:14962106-14962125 None:intergenic 30.0%
TGTAAATAACATATCTCCAG+TGG + chr5.1:14963029-14963048 None:intergenic 30.0%
TTGTAGCTTCTCAAAAATCA+CGG + chr5.1:14961827-14961846 None:intergenic 30.0%
! ATGTGAAAGTGTAAAACAAG+TGG - chr5.1:14961933-14961952 MS.gene86544:intron 30.0%
! ATTGATAACTTTAAGCACAC+AGG - chr5.1:14962422-14962441 MS.gene86544:CDS 30.0%
! CCTGTGTCTCTTTTTATTAA+TGG + chr5.1:14963201-14963220 None:intergenic 30.0%
! GATATGTTATTTACACCCAA+AGG - chr5.1:14963034-14963053 MS.gene86544:intron 30.0%
! TTTATGTTTGTTGGAAGTAC+CGG - chr5.1:14961567-14961586 MS.gene86544:intron 30.0%
!! AAGATTTAGGAGCCATTTTA+TGG - chr5.1:14961656-14961675 MS.gene86544:intron 30.0%
!!! AGGAGACTGTTGTTTTAATA+TGG + chr5.1:14962080-14962099 None:intergenic 30.0%
!!! CCGATAATTCCTTTTTTTGT+TGG - chr5.1:14961409-14961428 MS.gene86544:intron 30.0%
!!! TGGTTTGTTTTATTTGGGTT+GGG - chr5.1:14962006-14962025 MS.gene86544:intron 30.0%
!!! TTGGTTTGTTTTATTTGGGT+TGG - chr5.1:14962005-14962024 MS.gene86544:intron 30.0%
AAAGAACGTTGATCTCATGA+AGG + chr5.1:14962352-14962371 None:intergenic 35.0%
AAATGAAACATGCTGACACT+GGG + chr5.1:14963815-14963834 None:intergenic 35.0%
AAGAACGTTGATCTCATGAA+GGG + chr5.1:14962351-14962370 None:intergenic 35.0%
AAGACAATTATTCTCGTTCC+CGG + chr5.1:14961589-14961608 None:intergenic 35.0%
AATCCAAGGATTACTTTGAC+CGG - chr5.1:14963897-14963916 MS.gene86544:intron 35.0%
ACTGTGGAAAAGGTTAATGT+TGG - chr5.1:14964142-14964161 MS.gene86544:CDS 35.0%
AGACTTCAGTATAACTTCAG+GGG + chr5.1:14962951-14962970 None:intergenic 35.0%
AGAGAACAAAACAGGACAAT+TGG - chr5.1:14961986-14962005 MS.gene86544:intron 35.0%
AGGTACTAAATAATGTGTCC+TGG - chr5.1:14963437-14963456 MS.gene86544:intron 35.0%
AGTATCATAAGCAAGCCAAA+CGG + chr5.1:14961115-14961134 None:intergenic 35.0%
ATAAGAAGAACATACAGAGG+TGG + chr5.1:14961139-14961158 None:intergenic 35.0%
CAAACCAAAGAGAACAAAAC+AGG - chr5.1:14961978-14961997 MS.gene86544:intron 35.0%
CAAGTCTTGGATCCATAAAA+TGG + chr5.1:14961671-14961690 None:intergenic 35.0%
CAGACTTCAGTATAACTTCA+GGG + chr5.1:14962952-14962971 None:intergenic 35.0%
CGAGAATAATTGTCTTTCTC+AGG - chr5.1:14961593-14961612 MS.gene86544:intron 35.0%
GAATAGCTGAAAATTGGGAA+TGG - chr5.1:14961437-14961456 MS.gene86544:intron 35.0%
GATTACTTGCATAGTGAACT+TGG - chr5.1:14962581-14962600 MS.gene86544:CDS 35.0%
GTGATCTAAAAAGGATTCGT+AGG - chr5.1:14963924-14963943 MS.gene86544:intron 35.0%
TAAATGGCACGAGTTAATGT+AGG - chr5.1:14961699-14961718 MS.gene86544:intron 35.0%
TATATTGCTCAGAGGAAACT+TGG - chr5.1:14961072-14961091 MS.gene86544:CDS 35.0%
TATGAGCAACCTTCAAATCA+AGG - chr5.1:14964165-14964184 MS.gene86544:CDS 35.0%
TCAATCAGCAATTTGTCAAG+TGG + chr5.1:14963962-14963981 None:intergenic 35.0%
TCAATGGAAGACCTTTGTAA+TGG + chr5.1:14962520-14962539 None:intergenic 35.0%
TCTCAAAATCCAGAAAAGTG+CGG - chr5.1:14962307-14962326 MS.gene86544:CDS 35.0%
TGATCATGTTGAAGGGAAAA+TGG - chr5.1:14963623-14963642 MS.gene86544:intron 35.0%
TTCTTTCATCCATTGCTGAT+GGG - chr5.1:14962366-14962385 MS.gene86544:CDS 35.0%
TTGTTCTTCTTCATCAGGAT+CGG - chr5.1:14960966-14960985 MS.gene86544:CDS 35.0%
! ACTTTCCTACCTTGATTTGA+AGG + chr5.1:14964177-14964196 None:intergenic 35.0%
! ATGTCTTGTTCTTCTTCATC+AGG - chr5.1:14960961-14960980 MS.gene86544:CDS 35.0%
! ATGTTATTTACACCCAAAGG+TGG - chr5.1:14963037-14963056 MS.gene86544:intron 35.0%
! ATTCTTTTATAGCCCATGTG+AGG - chr5.1:14963413-14963432 MS.gene86544:intron 35.0%
! TATGGTTAACGAGTTTTCAG+AGG - chr5.1:14963135-14963154 MS.gene86544:intron 35.0%
! TTCTTTTATAGCCCATGTGA+GGG - chr5.1:14963414-14963433 MS.gene86544:intron 35.0%
!! ACATTAACTCGTGCCATTTA+TGG + chr5.1:14961699-14961718 None:intergenic 35.0%
!! CTTTGGTTTGATATTCTCAG+TGG + chr5.1:14961968-14961987 None:intergenic 35.0%
!! TACAACTTGTAGCTTTGAAG+TGG - chr5.1:14961842-14961861 MS.gene86544:intron 35.0%
!! TGATAGTGTGAAAAGTGTCA+GGG - chr5.1:14963349-14963368 MS.gene86544:intron 35.0%
!! TTATGTTTGTTGGAAGTACC+GGG - chr5.1:14961568-14961587 MS.gene86544:intron 35.0%
!! TTGATAGTGTGAAAAGTGTC+AGG - chr5.1:14963348-14963367 MS.gene86544:intron 35.0%
!! TTGTCCTGTTTTGTTCTCTT+TGG + chr5.1:14961985-14962004 None:intergenic 35.0%
!!! AGATGCAAGATTGTCGATTT+TGG - chr5.1:14962866-14962885 MS.gene86544:intron 35.0%
ACAGCTTCAATTGAAGGAAG+AGG - chr5.1:14962800-14962819 MS.gene86544:CDS 40.0%
AGCAACCTTCAAATCAAGGT+AGG - chr5.1:14964169-14964188 MS.gene86544:CDS 40.0%
AGCTATCACCAAGAAACTCA+AGG + chr5.1:14962475-14962494 None:intergenic 40.0%
ATGAGGGATTTGAGTCCTAT+CGG - chr5.1:14960998-14961017 MS.gene86544:CDS 40.0%
ATGATCCTGAAATCAGCACA+AGG + chr5.1:14963739-14963758 None:intergenic 40.0%
ATTCCTTCTCTGTAGACATG+TGG - chr5.1:14962975-14962994 MS.gene86544:intron 40.0%
ATTTAGTACCTCCCTCACAT+GGG + chr5.1:14963428-14963447 None:intergenic 40.0%
CACAGAAACAAACAGGCTAT+TGG - chr5.1:14961887-14961906 MS.gene86544:intron 40.0%
CCAGACTTCAGTATAACTTC+AGG + chr5.1:14962953-14962972 None:intergenic 40.0%
CCTGAAGTTATACTGAAGTC+TGG - chr5.1:14962950-14962969 MS.gene86544:intron 40.0%
CGTGCAGTTGCTAAAATATC+GGG - chr5.1:14962773-14962792 MS.gene86544:CDS 40.0%
GAAATGAAACATGCTGACAC+TGG + chr5.1:14963816-14963835 None:intergenic 40.0%
GATCTAAAAGGGTCTTTGGA+AGG + chr5.1:14962662-14962681 None:intergenic 40.0%
GCGTGCAGTTGCTAAAATAT+CGG - chr5.1:14962772-14962791 MS.gene86544:CDS 40.0%
GGAAGAACAGCTTCAATTGA+AGG - chr5.1:14962794-14962813 MS.gene86544:CDS 40.0%
GTTCTTTCATCCATTGCTGA+TGG - chr5.1:14962365-14962384 MS.gene86544:CDS 40.0%
TATTTAGTACCTCCCTCACA+TGG + chr5.1:14963429-14963448 None:intergenic 40.0%
TCTGGCGCAAAATCAAAAAG+TGG + chr5.1:14964037-14964056 None:intergenic 40.0%
TCTTTCATCCATTGCTGATG+GGG - chr5.1:14962367-14962386 MS.gene86544:CDS 40.0%
TGTGGCATATCTAATGCTTG+TGG - chr5.1:14963848-14963867 MS.gene86544:intron 40.0%
TTAAGCACACAGGTCCAAAT+GGG - chr5.1:14962432-14962451 MS.gene86544:CDS 40.0%
TTATTTACACCCAAAGGTGG+TGG - chr5.1:14963040-14963059 MS.gene86544:intron 40.0%
TTTAAGCACACAGGTCCAAA+TGG - chr5.1:14962431-14962450 MS.gene86544:CDS 40.0%
! TCCAAAGACCCTTTTAGATC+CGG - chr5.1:14962662-14962681 MS.gene86544:CDS 40.0%
! TCCTTTTTAGATCACCATGC+CGG + chr5.1:14963919-14963938 None:intergenic 40.0%
! TGTGGATTGCAGATTGCAAT+TGG - chr5.1:14963866-14963885 MS.gene86544:intron 40.0%
!! AATGTCCTTGTGCTGATTTC+AGG - chr5.1:14963731-14963750 MS.gene86544:intron 40.0%
!! CAATAGCCTGTTTGTTTCTG+TGG + chr5.1:14961889-14961908 None:intergenic 40.0%
!! CGATTTTGGAAATGCGTGTT+GGG - chr5.1:14962880-14962899 MS.gene86544:intron 40.0%
!! GTCAGGTTTTGTGAATTGTG+AGG + chr5.1:14961464-14961483 None:intergenic 40.0%
!! TCGATTTTGGAAATGCGTGT+TGG - chr5.1:14962879-14962898 MS.gene86544:intron 40.0%
!! TTTCAGGCTTTAAGTCTGTG+TGG + chr5.1:14962613-14962632 None:intergenic 40.0%
AAGGATTACTTTGACCGGCA+TGG - chr5.1:14963902-14963921 MS.gene86544:intron 45.0%
AATTGGTGGAGCTCAATCCA+AGG - chr5.1:14963883-14963902 MS.gene86544:intron 45.0%
ACAAGGTTATAGCGAGGATG+AGG - chr5.1:14963063-14963082 MS.gene86544:intron 45.0%
ACCGGCATGGTGATCTAAAA+AGG - chr5.1:14963915-14963934 MS.gene86544:intron 45.0%
AGACCACATGTCTACAGAGA+AGG + chr5.1:14962981-14963000 None:intergenic 45.0%
ATAACCTTGTCCACCACCTT+TGG + chr5.1:14963053-14963072 None:intergenic 45.0%
ATCATAAGCAAGCCAAACGG+TGG + chr5.1:14961112-14961131 None:intergenic 45.0%
ATGCCGGTCAAAGTAATCCT+TGG + chr5.1:14963903-14963922 None:intergenic 45.0%
ATGGTATCCACCTTTCCGAT+AGG + chr5.1:14961016-14961035 None:intergenic 45.0%
ATTCATTGCAGTTCAGCCAG+GGG + chr5.1:14964093-14964112 None:intergenic 45.0%
CAGAAAAACGACCAACTGCA+CGG - chr5.1:14964053-14964072 MS.gene86544:CDS 45.0%
GAAACTCAAGGACCATGCAA+TGG + chr5.1:14962463-14962482 None:intergenic 45.0%
GATTCATTGCAGTTCAGCCA+GGG + chr5.1:14964094-14964113 None:intergenic 45.0%
GGATCATCTTGCCTTGATGA+TGG - chr5.1:14963752-14963771 MS.gene86544:intron 45.0%
GGATTGCAGATTGCAATTGG+TGG - chr5.1:14963869-14963888 MS.gene86544:intron 45.0%
GGATTTGAGTCCTATCGGAA+AGG - chr5.1:14961003-14961022 MS.gene86544:CDS 45.0%
TAACCTTGTCCACCACCTTT+GGG + chr5.1:14963052-14963071 None:intergenic 45.0%
TAGAGTCGCTGATCAATTCG+CGG - chr5.1:14961041-14961060 MS.gene86544:CDS 45.0%
TCCGGATCTAAAAGGGTCTT+TGG + chr5.1:14962666-14962685 None:intergenic 45.0%
TGATTCATTGCAGTTCAGCC+AGG + chr5.1:14964095-14964114 None:intergenic 45.0%
TGCATGGTCCTTGAGTTTCT+TGG - chr5.1:14962464-14962483 MS.gene86544:CDS 45.0%
TGCTCAGAGGAAACTTGGTT+GGG - chr5.1:14961077-14961096 MS.gene86544:CDS 45.0%
TTAATCTTAGCAACAGGGCC+AGG + chr5.1:14962100-14962119 None:intergenic 45.0%
TTCTTCTTCATCAGGATCGG+AGG - chr5.1:14960969-14960988 MS.gene86544:CDS 45.0%
TTGCTCAGAGGAAACTTGGT+TGG - chr5.1:14961076-14961095 MS.gene86544:CDS 45.0%
TTTGAGTCCTATCGGAAAGG+TGG - chr5.1:14961006-14961025 MS.gene86544:CDS 45.0%
! GACTCTCCCCAACTTTAGAA+CGG - chr5.1:14962684-14962703 MS.gene86544:CDS 45.0%
! TTTTATAGCCCATGTGAGGG+AGG - chr5.1:14963417-14963436 MS.gene86544:intron 45.0%
!! AGCCTGTTTGTTTCTGTGGT+GGG + chr5.1:14961885-14961904 None:intergenic 45.0%
!! ATTGCTTTTGAGCTTGCCAC+TGG - chr5.1:14963010-14963029 MS.gene86544:intron 45.0%
!! CCAACTTTAGAACGGACTGA+GGG - chr5.1:14962692-14962711 MS.gene86544:CDS 45.0%
!! CCTCAGTCCGTTCTAAAGTT+GGG + chr5.1:14962694-14962713 None:intergenic 45.0%
!! CTCAGTCCGTTCTAAAGTTG+GGG + chr5.1:14962693-14962712 None:intergenic 45.0%
!! TAGCCTGTTTGTTTCTGTGG+TGG + chr5.1:14961886-14961905 None:intergenic 45.0%
!! TTCTAAAGTTGGGGAGAGTC+CGG + chr5.1:14962684-14962703 None:intergenic 45.0%
!!! TTAAATTTGATTTAATAATA+TGG - chr5.1:14963117-14963136 MS.gene86544:intron 5.0%
AAATCACGGCCAACTTGCGT+TGG + chr5.1:14961813-14961832 None:intergenic 50.0%
AAATGGGCAGCACCATTGCA+TGG - chr5.1:14962448-14962467 MS.gene86544:CDS 50.0%
AATCACGGCCAACTTGCGTT+GGG + chr5.1:14961812-14961831 None:intergenic 50.0%
ACTGAGGGAAACACAAACGG+TGG - chr5.1:14962707-14962726 MS.gene86544:CDS 50.0%
AGAGTCGCTGATCAATTCGC+GGG - chr5.1:14961042-14961061 MS.gene86544:CDS 50.0%
AGGATCGGAGGAAGATGATG+AGG - chr5.1:14960981-14961000 MS.gene86544:CDS 50.0%
CGGACTGAGGGAAACACAAA+CGG - chr5.1:14962704-14962723 MS.gene86544:CDS 50.0%
CTCCCACCACAGAAACAAAC+AGG - chr5.1:14961880-14961899 MS.gene86544:intron 50.0%
GATCAGCGACTCTAACAGCA+TGG + chr5.1:14961035-14961054 None:intergenic 50.0%
GCTCAGAGGAAACTTGGTTG+GGG - chr5.1:14961078-14961097 MS.gene86544:CDS 50.0%
GGATCGGAGGAAGATGATGA+GGG - chr5.1:14960982-14961001 MS.gene86544:CDS 50.0%
GGGAGAGTCCGGATCTAAAA+GGG + chr5.1:14962673-14962692 None:intergenic 50.0%
TACCACATCCCAACGCAAGT+TGG - chr5.1:14961801-14961820 MS.gene86544:intron 50.0%
TCCGAGGAGTTCCATCATCA+AGG + chr5.1:14963766-14963785 None:intergenic 50.0%
! GTGGGAGGTATATTGCTCAG+AGG - chr5.1:14961064-14961083 MS.gene86544:CDS 50.0%
! TGGTGGACAAGGTTATAGCG+AGG - chr5.1:14963057-14963076 MS.gene86544:intron 50.0%
!! ATGCAATGGTGCTGCCCATT+TGG + chr5.1:14962449-14962468 None:intergenic 50.0%
!! CCCAACTTTAGAACGGACTG+AGG - chr5.1:14962691-14962710 MS.gene86544:CDS 50.0%
!! CCCTCAGTCCGTTCTAAAGT+TGG + chr5.1:14962695-14962714 None:intergenic 50.0%
!! CTGTTTGTTTCTGTGGTGGG+AGG + chr5.1:14961882-14961901 None:intergenic 50.0%
!! GCCTTGATGATGGAACTCCT+CGG - chr5.1:14963762-14963781 MS.gene86544:intron 50.0%
!!! CGTGCAGTTGGTCGTTTTTC+TGG + chr5.1:14964055-14964074 None:intergenic 50.0%
AACTCCTCGGAAAGATGCCC+CGG - chr5.1:14963775-14963794 MS.gene86544:intron 55.0%
AAGGGCAGCCTGAACGAACT+CGG + chr5.1:14962333-14962352 None:intergenic 55.0%
GGGGAGAGTCCGGATCTAAA+AGG + chr5.1:14962674-14962693 None:intergenic 55.0%
GGGGTCAATTCTCCACCGTT+TGG - chr5.1:14961097-14961116 MS.gene86544:CDS 55.0%
TCGCTGATCAATTCGCGGGT+GGG - chr5.1:14961046-14961065 MS.gene86544:CDS 55.0%
! CTGGGAGTGTACTCACCTTC+CGG + chr5.1:14963797-14963816 None:intergenic 55.0%
! TGCAGGTATTGCCGTGCAGT+TGG + chr5.1:14964067-14964086 None:intergenic 55.0%
! TGGGAGTGTACTCACCTTCC+GGG + chr5.1:14963796-14963815 None:intergenic 55.0%
!! ACACCCAAAGGTGGTGGACA+AGG - chr5.1:14963046-14963065 MS.gene86544:intron 55.0%
AAGTGCGGCCGAGTTCGTTC+AGG - chr5.1:14962322-14962341 MS.gene86544:CDS 60.0%
CGATGGGTCCCCATCAGCAA+TGG + chr5.1:14962378-14962397 None:intergenic 60.0%
CTGATCAATTCGCGGGTGGG+AGG - chr5.1:14961049-14961068 MS.gene86544:CDS 60.0%
GGCAATACCTGCAACACCCC+TGG - chr5.1:14964074-14964093 MS.gene86544:CDS 60.0%
GGCCAACTTGCGTTGGGATG+TGG + chr5.1:14961806-14961825 None:intergenic 60.0%
GTCGCTGATCAATTCGCGGG+TGG - chr5.1:14961045-14961064 MS.gene86544:CDS 60.0%
! CGAACTCGGCCGCACTTTTC+TGG + chr5.1:14962319-14962338 None:intergenic 60.0%
! GGGAGTGTACTCACCTTCCG+GGG + chr5.1:14963795-14963814 None:intergenic 60.0%
!! AGTTCAGCCAGGGGTGTTGC+AGG + chr5.1:14964084-14964103 None:intergenic 60.0%
CCTCGGAAAGATGCCCCGGA+AGG - chr5.1:14963779-14963798 MS.gene86544:intron 65.0%
! CCTTCCGGGGCATCTTTCCG+AGG + chr5.1:14963782-14963801 None:intergenic 65.0%


Chromosome Type Strat End Strand Name
chr5.1 gene 14960961 14964198 14960961 ID=MS.gene86544
chr5.1 mRNA 14960961 14964198 14960961 ID=MS.gene86544.t1;Parent=MS.gene86544
chr5.1 exon 14964016 14964198 14964016 ID=MS.gene86544.t1.exon1;Parent=MS.gene86544.t1
chr5.1 CDS 14964016 14964198 14964016 ID=cds.MS.gene86544.t1;Parent=MS.gene86544.t1
chr5.1 exon 14962075 14962863 14962075 ID=MS.gene86544.t1.exon2;Parent=MS.gene86544.t1
chr5.1 CDS 14962075 14962863 14962075 ID=cds.MS.gene86544.t1;Parent=MS.gene86544.t1
chr5.1 exon 14961359 14961406 14961359 ID=MS.gene86544.t1.exon3;Parent=MS.gene86544.t1
chr5.1 CDS 14961359 14961406 14961359 ID=cds.MS.gene86544.t1;Parent=MS.gene86544.t1
chr5.1 exon 14960961 14961281 14960961 ID=MS.gene86544.t1.exon4;Parent=MS.gene86544.t1
chr5.1 CDS 14960961 14961281 14960961 ID=cds.MS.gene86544.t1;Parent=MS.gene86544.t1
Gene Sequence

>MS.gene86544

ATGTCTTGTTCTTCTTCATCAGGATCGGAGGAAGATGATGAGGGATTTGAGTCCTATCGGAAAGGTGGATACCATGCTGTTAGAGTCGCTGATCAATTCGCGGGTGGGAGGTATATTGCTCAGAGGAAACTTGGTTGGGGTCAATTCTCCACCGTTTGGCTTGCTTATGATACTACCACCTCTGTATGTTCTTCTTATACTTTTGTTTTCAATTCAACCTATTTTTTGTTTTTCATGATTTTCACATGTGGTTCATGTTTTAGATTTGAAAGTTTTTTTCTTTGTTTTGTTTATGATTGTTTGTTATGTTTTGTGTAGGTTTATTAGCTCAAATTTGGTTTGATTTGTTTGTTTAATGATGTTTTTTTTTTTTTTGTTATTGAATGAATGGATCTAATTCAGATTTTTTTTTTCTTCTTTTGTTCAATGTGTGTTACAATTACAAATTCCGATAATTCCTTTTTTTGTTGGAATTGGAATAGCTGAAAATTGGGAATGGTCCTCACAATTCACAAAACCTGACCTTATGTTACATTGTTTTTGTCTTTATGTACAAAAGCAATAAATGTGTCTTTTATATCAAATCTAACACATGTACATGTACCATTTATGTTTGTTGGAAGTACCGGGAACGAGAATAATTGTCTTTCTCAGGTTAATTTTTGATTCAGTAGTTTTTTTGTTTTTTTGCTGTCAAGATTTAGGAGCCATTTTATGGATCCAAGACTTGTGATACCATAAATGGCACGAGTTAATGTAGGATCTTTCTAGTGTTTGAATTGACGTTAGAAACAAATACATTTGGTAGACATATTAGAATGATGTTTGGATACACTTCAATACCACATCCCAACGCAAGTTGGCCGTGATTTTTGAGAAGCTACAACTTGTAGCTTTGAAGTGGATGCGAGTTTAACTCCTCCCACCACAGAAACAAACAGGCTATTGGTGCAAATTAACAAACGGGACACAATGTGAAAGTGTAAAACAAGTGGTACTCAATTCCACTGAGAATATCAAACCAAAGAGAACAAAACAGGACAATTGGTTTGTTTTATTTGGGTTGGGTGCTATGTGTTACTTACATCACTCTTCATTAATCTAATCAAGATGGTTCCATATTAAAACAACAGTCTCCTGGCCCTGTTGCTAAGATTAATATCCAAGTTCATCTTTTATTCATGTATTTATGTTTGATTTCAAAAATATTCTATATGGGTAAACAATTATGGGCATGCATGTATTGCTTTATGTTTGCCCAACCAGCGATAATTTTTAAAATTATTTTTGCGCACCACTAATATCTTTTTCTAATTTTATGATTGTTGTTTTCAGTCATACGTTGCTCTCAAAATCCAGAAAAGTGCGGCCGAGTTCGTTCAGGCTGCCCTTCATGAGATCAACGTTCTTTCATCCATTGCTGATGGGGACCCATCGAATTCAAAGTTTGTTGTCCAATTGATTGATAACTTTAAGCACACAGGTCCAAATGGGCAGCACCATTGCATGGTCCTTGAGTTTCTTGGTGATAGCTTGCTTCGTTTGATCAAATACAGCCATTACAAAGGTCTTCCATTGAATAAAGTTAGAGAGATTTGTAAATACATTTTGATTGGTTTGGATTACTTGCATAGTGAACTTGGTATAATCCACACAGACTTAAAGCCTGAAAACATTCTTCTATTTTCAACTATTGATCCTTCCAAAGACCCTTTTAGATCCGGACTCTCCCCAACTTTAGAACGGACTGAGGGAAACACAAACGGTGGACTTACAAGTCTTATTGAGAAAAGGCTGAAGAGAAGAGCAAAGCGTGCAGTTGCTAAAATATCGGGAAGAACAGCTTCAATTGAAGGAAGAGGAGAAGCTGCAAAGTCTAGTAGAAATATTGACGGGATTGATGTGAGATGCAAGATTGTCGATTTTGGAAATGCGTGTTGGGCTGATAACAAGTTTGCAGAAGAAATACAGACAAGACAATATAGAGCCCCTGAAGTTATACTGAAGTCTGGTTATTCCTTCTCTGTAGACATGTGGTCTTTTGCTTGCATTGCTTTTGAGCTTGCCACTGGAGATATGTTATTTACACCCAAAGGTGGTGGACAAGGTTATAGCGAGGATGAGGTATGCTGATTTTTCTAGTAAACTGTTGTTGTTTAAATTTGATTTAATAATATGGTTAACGAGTTTTCAGAGGTTTAATATGTGAAAAAACTGGTTTAATTAGCTCAATTACACCATTAATAAAAAGAGACACAGGGGCATATTTCATTGAATCAGCTTGTAATACTAATGCATAATATGCATTAGTTTAAATGTCTGATTAGTTTACAAACTTTCTACATGTTTTGATATGTACATTTTCATTTTTACTTAAGAAAATAGTTTTGATAGTGTGAAAAGTGTCAGGGATATCAGATTTTACTTCTATTCACTGTTTTATATATTTATGATTCTTTTATAGCCCATGTGAGGGAGGTACTAAATAATGTGTCCTGGTTTTGAACAATTTCTCATCGTTTTTATTTCCCTAAACGATAGAGTTTTTATGATCTCAGACCGAGAATGAAATTCAAAGTTTCATGCTAGTGATCTATCATTGATAACTCTTAAATTGTTGTATGCAAAAGGCTATATATATTGTATCCTTTTATTCTTTTTATGATCATGTTGAAGGGAAAATGGTCAAGATATATTTGTTTGCATTGAGTTCCATGCTATTTCTATAGAACCTATAAAAACTTATATTATTTGTTACTGGAATAATAAAAATGTCCTTGTGCTGATTTCAGGATCATCTTGCCTTGATGATGGAACTCCTCGGAAAGATGCCCCGGAAGGTGAGTACACTCCCAGTGTCAGCATGTTTCATTTCTAAAATAAATATTGTGGCATATCTAATGCTTGTGGATTGCAGATTGCAATTGGTGGAGCTCAATCCAAGGATTACTTTGACCGGCATGGTGATCTAAAAAGGATTCGTAGGCTAAAATTTTGTCCACTTGACAAATTGCTGATTGATAGATATAAATTTTCAGCGAATGATGCTCAAGAGTTTTCAGAATTTCTTTTGCCACTTTTTGATTTTGCGCCAGAAAAACGACCAACTGCACGGCAATACCTGCAACACCCCTGGCTGAACTGCAATGAATCAGCGCCAAATGAAATGAGAAATGAATCTACTGTGGAAAAGGTTAATGTTGGTATGAGCAACCTTCAAATCAAGGTAGGAAAGTGA
Protein sequence

>MS.gene86544.t1

MSCSSSSGSEEDDEGFESYRKGGYHAVRVADQFAGGRYIAQRKLGWGQFSTVWLAYDTTTSSYVALKIQKSAAEFVQAALHEINVLSSIADGDPSNSKFVVQLIDNFKHTGPNGQHHCMVLEFLGDSLLRLIKYSHYKGLPLNKVREICKYILIGLDYLHSELGIIHTDLKPENILLFSTIDPSKDPFRSGLSPTLERTEGNTNGGLTSLIEKRLKRRAKRAVAKISGRTASIEGRGEAAKSSRNIDGIDVRCKIVDFGNACWADNKFAEEIQTRQYRAPEVILKSGYSFSVDMWSFACIAFELATGDMLFTPKGGGQGYSEDEDHLALMMELLGKMPRKIAIGGAQSKDYFDRHGDLKRIRRLKFCPLDKLLIDRYKFSANDAQEFSEFLLPLFDFAPEKRPTARQYLQHPWLNCNESAPNEMRNESTVEKVNVGMSNLQIKVGK