AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene65332

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene65332.t1 MTR_5g024270 99.103 446 4 0 1 446 1 446 0.0 924
MS.gene65332.t1 MTR_8g073250 82.287 446 75 2 1 446 1 442 0.0 743
MS.gene65332.t1 MTR_5g024270 98.538 342 5 0 1 342 1 342 0.0 705
MS.gene65332.t1 MTR_1g061690 53.066 473 162 6 2 415 8 479 1.64e-174 500
MS.gene65332.t1 MTR_2g084555 48.450 516 186 5 6 442 8 522 5.66e-169 486
MS.gene65332.t1 MTR_4g056390 51.496 468 162 5 12 415 13 479 2.81e-168 484
MS.gene65332.t1 MTR_3g109390 31.266 387 196 10 37 414 51 376 9.13e-44 157
MS.gene65332.t1 MTR_3g109390 31.266 387 196 10 37 414 73 398 1.81e-43 157
MS.gene65332.t1 MTR_3g109390 31.525 387 193 11 37 414 73 396 6.09e-43 156
MS.gene65332.t1 MTR_3g109390 31.034 377 190 10 47 414 70 385 1.42e-41 152
MS.gene65332.t1 MTR_3g109390 31.034 377 190 10 47 414 92 407 3.27e-41 151
MS.gene65332.t1 MTR_3g076540 27.970 404 219 10 21 414 78 419 3.94e-38 143
MS.gene65332.t1 MTR_3g076540 28.351 388 207 9 37 414 11 337 1.09e-37 140
MS.gene65332.t1 MTR_3g109390 32.188 320 156 8 37 356 73 331 1.72e-37 139
MS.gene65332.t1 MTR_4g104620 28.429 401 215 11 21 411 82 420 4.89e-37 140
MS.gene65332.t1 MTR_3g076540 28.084 381 203 9 44 414 1 320 4.04e-36 135
MS.gene65332.t1 MTR_4g104620 28.760 379 199 10 43 411 9 326 6.24e-36 135
MS.gene65332.t1 MTR_3g076540 27.427 412 219 11 21 414 78 427 1.25e-35 137
MS.gene65332.t1 MTR_4g104620 28.571 378 199 10 44 411 1 317 2.31e-35 134
MS.gene65332.t1 MTR_3g086530 28.117 409 216 12 21 415 77 421 9.93e-35 134
MS.gene65332.t1 MTR_3g086530 28.655 342 179 9 21 358 77 357 9.99e-35 133
MS.gene65332.t1 MTR_3g086530 28.415 366 185 11 64 415 2 304 1.77e-30 120
MS.gene65332.t1 MTR_3g086530 28.571 287 153 8 21 306 77 312 2.36e-28 114
MS.gene65332.t1 MTR_5g082700 24.495 396 205 11 29 414 394 705 1.52e-23 103
MS.gene65332.t1 MTR_8g070930 40.000 145 81 3 37 180 138 277 4.50e-22 99.8
MS.gene65332.t1 MTR_8g070930 39.450 109 58 3 254 361 285 386 1.79e-13 73.2
MS.gene65332.t1 MTR_3g086530 28.013 307 149 9 123 415 1 249 6.42e-22 95.1
MS.gene65332.t1 MTR_6g074905 31.361 169 101 5 252 414 1005 1164 4.73e-19 90.9
MS.gene65332.t1 MTR_0349s0030 31.176 170 102 5 252 415 125 285 6.62e-19 87.0
MS.gene65332.t1 MTR_5g082700 34.194 155 93 3 29 179 394 543 3.43e-16 81.3
MS.gene65332.t1 MTR_5g082700 33.987 153 92 3 29 177 394 541 4.59e-16 81.3
MS.gene65332.t1 MTR_1g111180 34.615 182 85 8 254 414 822 990 1.33e-14 76.6
MS.gene65332.t1 MTR_1g111180 30.814 172 100 5 11 177 657 814 4.65e-14 75.1
MS.gene65332.t1 MTR_1g111180 34.615 182 85 8 254 414 823 991 1.34e-14 76.6
MS.gene65332.t1 MTR_1g111180 30.814 172 100 5 11 177 658 815 4.74e-14 75.1
MS.gene65332.t1 MTR_6g074870 30.645 124 75 3 252 371 236 352 7.90e-13 69.7
MS.gene65332.t1 MTR_6g074750 43.333 60 32 1 252 309 54 113 7.02e-12 62.8
MS.gene65332.t1 MTR_3g110180 30.822 146 85 5 34 177 5 136 4.73e-11 64.7
MS.gene65332.t1 MTR_3g110180 30.822 146 85 5 34 177 5 136 4.88e-11 64.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene65332.t1 AT4G35500 73.094 446 108 4 1 443 1 437 0.0 656
MS.gene65332.t1 AT2G17530 75.730 445 97 4 1 443 1 436 0.0 648
MS.gene65332.t1 AT2G17530 75.730 445 97 4 1 443 1 436 0.0 648
MS.gene65332.t1 AT4G35500 70.917 447 117 5 1 443 1 438 0.0 631
MS.gene65332.t1 AT2G17530 79.592 343 67 3 1 341 1 342 0.0 518
MS.gene65332.t1 AT3G53030 49.901 505 184 8 5 442 7 509 1.56e-170 489
MS.gene65332.t1 AT3G44850 51.613 465 163 5 12 415 19 482 1.59e-163 472
MS.gene65332.t1 AT5G22840 50.753 465 172 5 4 415 11 471 2.13e-163 471
MS.gene65332.t1 AT4G32660 30.370 405 208 12 21 414 47 388 2.50e-42 154
MS.gene65332.t1 AT4G32660 30.370 405 208 12 21 414 55 396 2.64e-42 154
MS.gene65332.t1 AT4G24740 29.310 406 211 12 21 414 44 385 7.27e-39 145
MS.gene65332.t1 AT4G24740 29.310 406 211 12 21 414 82 423 1.35e-38 145
MS.gene65332.t1 AT4G32660 31.157 337 170 10 21 356 55 330 3.03e-38 142
MS.gene65332.t1 AT4G24740 29.504 383 195 11 44 414 1 320 2.16e-37 139
MS.gene65332.t1 AT4G24740 29.504 383 195 11 44 414 1 320 2.16e-37 139
MS.gene65332.t1 AT4G24740 29.504 383 195 11 44 414 1 320 2.16e-37 139
MS.gene65332.t1 AT3G53570 29.095 409 213 14 21 415 99 444 1.18e-35 137
MS.gene65332.t1 AT3G53570 29.095 409 213 14 21 415 99 444 1.18e-35 137
MS.gene65332.t1 AT3G53570 29.095 409 213 14 21 415 99 444 1.18e-35 137
MS.gene65332.t1 AT3G53570 29.095 409 213 14 21 415 85 430 1.33e-35 137
MS.gene65332.t1 AT3G53570 29.095 409 213 14 21 415 85 430 1.33e-35 137
MS.gene65332.t1 AT4G24740 30.530 321 164 9 21 341 82 343 1.36e-34 132
MS.gene65332.t1 AT4G24740 30.872 298 148 8 44 341 1 240 2.66e-33 126
MS.gene65332.t1 AT4G32660 30.814 344 165 12 82 414 3 284 1.05e-32 125
MS.gene65332.t1 AT4G24740 30.420 286 147 8 21 306 82 315 1.37e-28 115
MS.gene65332.t1 AT5G35980 38.667 150 86 3 37 185 86 230 2.71e-22 100
MS.gene65332.t1 AT5G35980 42.424 99 50 2 254 352 232 323 4.78e-15 78.2
MS.gene65332.t1 AT5G35980 38.667 150 86 3 37 185 121 265 2.80e-22 100
MS.gene65332.t1 AT5G35980 42.424 99 50 2 254 352 267 358 5.48e-15 77.8
MS.gene65332.t1 AT5G35980 38.667 150 86 3 37 185 121 265 2.84e-22 100
MS.gene65332.t1 AT5G35980 42.424 99 50 2 254 352 267 358 5.08e-15 78.2
MS.gene65332.t1 AT4G24740 29.811 265 117 8 162 414 10 217 3.40e-21 92.0
MS.gene65332.t1 AT4G24740 29.811 265 117 8 162 414 10 217 3.40e-21 92.0
MS.gene65332.t1 AT1G73460 32.941 170 99 5 252 415 1001 1161 4.87e-21 97.1
MS.gene65332.t1 AT1G73460 32.258 155 96 3 29 179 849 998 1.77e-13 73.6
MS.gene65332.t1 AT1G73460 32.941 170 99 5 252 415 1001 1161 4.87e-21 97.1
MS.gene65332.t1 AT1G73460 32.258 155 96 3 29 179 849 998 1.77e-13 73.6
MS.gene65332.t1 AT1G73450 32.941 170 99 5 252 415 984 1144 5.26e-21 96.7
MS.gene65332.t1 AT1G73450 32.258 155 96 3 29 179 832 981 1.88e-13 73.2
MS.gene65332.t1 AT2G40120 24.311 399 212 12 29 419 252 568 1.31e-20 94.7
MS.gene65332.t1 AT3G17750 31.953 169 100 5 252 414 970 1129 8.88e-18 86.7
MS.gene65332.t1 AT3G17750 31.953 169 102 5 15 179 808 967 1.85e-13 73.2
MS.gene65332.t1 AT3G53640 32.961 179 93 6 254 414 470 639 1.12e-16 82.8
MS.gene65332.t1 AT3G53640 31.395 172 99 5 11 177 305 462 2.57e-12 69.3
MS.gene65332.t1 AT1G13350 31.395 172 99 5 11 177 424 581 4.19e-14 75.1
MS.gene65332.t1 AT1G13350 30.168 179 98 6 254 414 589 758 1.13e-13 73.9
MS.gene65332.t1 AT1G13350 31.395 172 99 5 11 177 451 608 4.58e-14 75.1
MS.gene65332.t1 AT1G13350 30.168 179 98 6 254 414 616 785 1.32e-13 73.6
MS.gene65332.t1 AT3G12690 26.224 286 178 9 42 315 189 453 4.89e-14 74.7
MS.gene65332.t1 AT3G12690 26.224 286 178 9 42 315 189 453 4.89e-14 74.7
MS.gene65332.t1 AT3G12690 26.224 286 178 9 42 315 189 453 4.89e-14 74.7
MS.gene65332.t1 AT1G13350 31.395 172 99 5 11 177 497 654 5.88e-14 74.7
MS.gene65332.t1 AT1G13350 30.168 179 98 6 254 414 662 831 1.13e-13 73.9
MS.gene65332.t1 AT3G25840 31.638 177 97 6 254 414 502 670 8.11e-14 73.9
MS.gene65332.t1 AT3G25840 30.233 172 101 5 11 177 337 494 3.05e-12 69.3
MS.gene65332.t1 AT3G25840 31.638 177 97 6 254 414 764 932 2.10e-13 73.2
MS.gene65332.t1 AT3G25840 30.233 172 101 5 11 177 599 756 3.01e-12 69.3
MS.gene65332.t1 AT3G20830 23.810 294 188 10 40 320 23 293 7.27e-12 67.4
MS.gene65332.t1 AT1G04440 28.571 147 93 4 31 177 2 136 7.69e-11 64.3

Find 115 sgRNAs with CRISPR-Local

Find 233 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AGATGCAAGATTGTCGATTT+TGG 0.222958 5.2:-15178649 MS.gene65332:CDS
ACCGGCATGGTGATCTAAAA+AGG 0.287476 5.2:-15177598 MS.gene65332:CDS
ATAACCTTGTCCACCACCTT+TGG 0.312925 5.2:+15178465 None:intergenic
TGCATGGTCCTTGAGTTTCT+TGG 0.316560 5.2:-15179051 MS.gene65332:CDS
TAACCTTGTCCACCACCTTT+GGG 0.320820 5.2:+15178466 None:intergenic
CCTCAGTCCGTTCTAAAGTT+GGG 0.329112 5.2:+15178824 None:intergenic
ATGTCTTGTTCTTCTTCATC+AGG 0.333473 5.2:-15180583 MS.gene65332:CDS
AGTTCAGCCAGGGGTGTTGC+AGG 0.337595 5.2:+15177432 None:intergenic
ACTTTCCTACCTTGATTTGA+AGG 0.337930 5.2:+15177339 None:intergenic
GGGGAGAGTCCGGATCTAAA+AGG 0.349666 5.2:+15178844 None:intergenic
TCCGGATCTAAAAGGGTCTT+TGG 0.351019 5.2:+15178852 None:intergenic
ATGCAATGGTGCTGCCCATT+TGG 0.353666 5.2:+15179069 None:intergenic
TGGGAGTGTACTCACCTTCC+GGG 0.362905 5.2:+15177720 None:intergenic
AAGTGCGGCCGAGTTTGTTC+AGG 0.372250 5.2:-15179193 MS.gene65332:CDS
GCGTGCAGTTGCTAAAATAT+CGG 0.390478 5.2:-15178743 MS.gene65332:CDS
GATTCATTTCTCATTTCATT+TGG 0.391464 5.2:+15177395 None:intergenic
GCTTAAAGTTATCAATCAAT+TGG 0.393123 5.2:+15179100 None:intergenic
ATCTCTCTAACTTTATTCAA+TGG 0.394338 5.2:+15178982 None:intergenic
TGCTCAGAGGAAACTTGGTT+GGG 0.402208 5.2:-15180467 MS.gene65332:CDS
GATTACTTGCATAGTGAACT+TGG 0.411710 5.2:-15178934 MS.gene65332:CDS
CCCTCAGTCCGTTCTAAAGT+TGG 0.414075 5.2:+15178823 None:intergenic
GGGGTCAATTCTCCACCGTT+TGG 0.419364 5.2:-15180447 MS.gene65332:CDS
TTTAAGCACACAGGTCCAAA+TGG 0.425606 5.2:-15179084 MS.gene65332:CDS
TGATTCATTGCAGTTCAGCC+AGG 0.429978 5.2:+15177421 None:intergenic
TTCTAAAGTTGGGGAGAGTC+CGG 0.433511 5.2:+15178834 None:intergenic
GGATCATCTTGCCTTGATGA+TGG 0.437810 5.2:-15177761 MS.gene65332:CDS
TTACAAGTCTTATTGAGAAA+AGG 0.437935 5.2:-15178783 MS.gene65332:CDS
CCAGACTTCAGTATAACTTC+AGG 0.439622 5.2:+15178565 None:intergenic
TGTGGATTGCAGATTGCAAT+TGG 0.442014 5.2:-15177647 MS.gene65332:intron
AAATGAATCTACTGTGGAAA+AGG 0.456827 5.2:-15177381 MS.gene65332:CDS
TATATTGCTCAGAGGAAACT+TGG 0.462401 5.2:-15180472 MS.gene65332:CDS
ACAACAAACTTTGAATTCGA+TGG 0.467683 5.2:+15179123 None:intergenic
TTGTTCTTCTTCATCAGGAT+CGG 0.468336 5.2:-15180578 MS.gene65332:CDS
GGCAATACCTGCAACACCCC+TGG 0.477580 5.2:-15177439 MS.gene65332:CDS
TCAATGGAAGACCTTTGTAA+TGG 0.483257 5.2:+15178998 None:intergenic
CGTGCAGTTGCTAAAATATC+GGG 0.483843 5.2:-15178742 MS.gene65332:CDS
GGAAGAACAGCTTCAATTGA+AGG 0.486531 5.2:-15178721 MS.gene65332:CDS
AACTCCTCGGAAAGATGCCC+CGG 0.493756 5.2:-15177738 MS.gene65332:CDS
TTGCTCAGAGGAAACTTGGT+TGG 0.496479 5.2:-15180468 MS.gene65332:CDS
TTCTTTCAACCATTGCTGAT+GGG 0.501024 5.2:-15179149 MS.gene65332:CDS
CAGACTTCAGTATAACTTCA+GGG 0.503743 5.2:+15178566 None:intergenic
CCTGAAGTTATACTGAAGTC+TGG 0.506057 5.2:-15178565 MS.gene65332:CDS
GATTCATTGCAGTTCAGCCA+GGG 0.507004 5.2:+15177422 None:intergenic
ATGCCGGTCAAAGTAATCCT+TGG 0.507357 5.2:+15177613 None:intergenic
GTTCTTTCAACCATTGCTGA+TGG 0.515507 5.2:-15179150 MS.gene65332:CDS
TCCGAGGAGTTCCATCATCA+AGG 0.521134 5.2:+15177750 None:intergenic
ACAGCTTCAATTGAAGGAAG+AGG 0.522518 5.2:-15178715 MS.gene65332:CDS
ATTGCTTTCGAGCTTGCCAC+TGG 0.524146 5.2:-15178505 MS.gene65332:CDS
CTCAGTCCGTTCTAAAGTTG+GGG 0.526561 5.2:+15178825 None:intergenic
TCTTTCAACCATTGCTGATG+GGG 0.528594 5.2:-15179148 MS.gene65332:CDS
AATCCAAGGATTACTTTGAC+CGG 0.528653 5.2:-15177616 MS.gene65332:CDS
TATGAGCAACCTTCAAATCA+AGG 0.531115 5.2:-15177348 MS.gene65332:CDS
CAACAAACTTTGAATTCGAT+GGG 0.538001 5.2:+15179124 None:intergenic
GGGAGAGTCCGGATCTAAAA+GGG 0.543496 5.2:+15178845 None:intergenic
TTATTTACACCCAAAGGTGG+TGG 0.545111 5.2:-15178475 MS.gene65332:CDS
TGCAGGTATTGCCGTGCAGT+TGG 0.547161 5.2:+15177449 None:intergenic
GGATTGCAGATTGCAATTGG+TGG 0.549667 5.2:-15177644 MS.gene65332:intron
ATGAGGGATTTGAGTCCTAT+CGG 0.552054 5.2:-15180546 MS.gene65332:CDS
TTAAGCACACAGGTCCAAAT+GGG 0.558245 5.2:-15179083 MS.gene65332:CDS
TCAATCAGCAATTTGTCAAG+TGG 0.561218 5.2:+15177554 None:intergenic
CTGATCAATTCGCGGGTGGG+AGG 0.561858 5.2:-15180495 MS.gene65332:CDS
GATATGTTATTTACACCCAA+AGG 0.565138 5.2:-15178481 MS.gene65332:CDS
ACACCCAAAGGTGGTGGACA+AGG 0.567008 5.2:-15178469 MS.gene65332:CDS
TAGAGTCGCTGATCAATTCG+CGG 0.570049 5.2:-15180503 MS.gene65332:CDS
CCTTCCGGGGCATCTTTCCG+AGG 0.576947 5.2:+15177734 None:intergenic
CGATGGGTCCCCATCAGCAA+TGG 0.578011 5.2:+15179140 None:intergenic
TTCTTCTTCATCAGGATCGG+AGG 0.578889 5.2:-15180575 MS.gene65332:CDS
ATTCCTTCTCTGTAGACATG+TGG 0.579312 5.2:-15178540 MS.gene65332:CDS
ACAAGGTTATAGCGAGGATG+AGG 0.579359 5.2:-15178452 MS.gene65332:intron
AAGGATTACTTTGACCGGCA+TGG 0.580864 5.2:-15177611 MS.gene65332:CDS
ACTGTGGAAAAGGTTAATGT+TGG 0.582824 5.2:-15177371 MS.gene65332:CDS
ATCAAATACAGCCATTACAA+AGG 0.586492 5.2:-15179009 MS.gene65332:CDS
ATTCATTGCAGTTCAGCCAG+GGG 0.586651 5.2:+15177423 None:intergenic
AGGATCGGAGGAAGATGATG+AGG 0.592202 5.2:-15180563 MS.gene65332:CDS
GATCTAAAAGGGTCTTTGGA+AGG 0.592260 5.2:+15178856 None:intergenic
GTCGCTGATCAATTCGCGGG+TGG 0.594980 5.2:-15180499 MS.gene65332:CDS
AAGGGCAGCCTGAACAAACT+CGG 0.595404 5.2:+15179185 None:intergenic
TCGCTGATCAATTCGCGGGT+GGG 0.599945 5.2:-15180498 MS.gene65332:CDS
ATTGATAACTTTAAGCACAC+AGG 0.601668 5.2:-15179093 MS.gene65332:CDS
TGTAAATAACATATCTCCAG+TGG 0.603326 5.2:+15178489 None:intergenic
CGGACTGAGGGAAACACAAA+CGG 0.603582 5.2:-15178811 MS.gene65332:CDS
TTTCAGGCTTTAAGTCTGTG+TGG 0.603818 5.2:+15178905 None:intergenic
GCTCAGAGGAAACTTGGTTG+GGG 0.605080 5.2:-15180466 MS.gene65332:CDS
AATTGGTGGAGCTCAATCCA+AGG 0.608972 5.2:-15177630 MS.gene65332:CDS
ATGGTATCCACCTTTCCGAT+AGG 0.609356 5.2:+15180531 None:intergenic
AGACCACATGTCTACAGAGA+AGG 0.609410 5.2:+15178537 None:intergenic
AGTCTAGTAGAAATATCGAC+GGG 0.609550 5.2:-15178681 MS.gene65332:CDS
AAATGGGCAGCACCATTGCA+TGG 0.610699 5.2:-15179067 MS.gene65332:CDS
AGAGTCGCTGATCAATTCGC+GGG 0.611441 5.2:-15180502 MS.gene65332:CDS
TTTGAGTCCTATCGGAAAGG+TGG 0.621569 5.2:-15180538 MS.gene65332:CDS
AAGTCTAGTAGAAATATCGA+CGG 0.621748 5.2:-15178682 MS.gene65332:CDS
AAAGAACGTTGATCTCGTGA+AGG 0.622147 5.2:+15179166 None:intergenic
GGGAGTGTACTCACCTTCCG+GGG 0.625406 5.2:+15177721 None:intergenic
AAGAACGTTGATCTCGTGAA+GGG 0.630667 5.2:+15179167 None:intergenic
AGTATCATAAGCAAGCCAAA+CGG 0.632450 5.2:+15180432 None:intergenic
GAAACTCAAGGACCATGCAA+TGG 0.636117 5.2:+15179055 None:intergenic
CCCAACTTTAGAACGGACTG+AGG 0.637641 5.2:-15178824 MS.gene65332:CDS
AGCAACCTTCAAATCAAGGT+AGG 0.638879 5.2:-15177344 MS.gene65332:CDS
GACTCTCCCCAACTTTAGAA+CGG 0.639593 5.2:-15178831 MS.gene65332:CDS
ATGTTATTTACACCCAAAGG+TGG 0.642360 5.2:-15178478 MS.gene65332:CDS
ATCATAAGCAAGCCAAACGG+TGG 0.646324 5.2:+15180435 None:intergenic
CCTCGGAAAGATGCCCCGGA+AGG 0.647925 5.2:-15177734 MS.gene65332:intron
GGATTTGAGTCCTATCGGAA+AGG 0.650525 5.2:-15180541 MS.gene65332:CDS
AGCTATCACCAAGAAACTCA+AGG 0.651636 5.2:+15179043 None:intergenic
GGATCGGAGGAAGATGATGA+GGG 0.654053 5.2:-15180562 MS.gene65332:CDS
GCCTTGATGATGGAACTCCT+CGG 0.654637 5.2:-15177751 MS.gene65332:CDS
GATCAGCGACTCTAACAGCA+TGG 0.659062 5.2:+15180512 None:intergenic
ATAAGAAGAACATACAGAGG+TGG 0.667158 5.2:+15180408 None:intergenic
AATGAGAAATGAATCTACTG+TGG 0.670154 5.2:-15177387 MS.gene65332:CDS
CCAACTTTAGAACGGACTGA+GGG 0.670163 5.2:-15178823 MS.gene65332:CDS
AGACTTCAGTATAACTTCAG+GGG 0.688658 5.2:+15178567 None:intergenic
ACTGAGGGAAACACAAACGG+TGG 0.700333 5.2:-15178808 MS.gene65332:CDS
TGGTGGACAAGGTTATAGCG+AGG 0.709203 5.2:-15178458 MS.gene65332:CDS
TCTCAAAATCCAGAAAAGTG+CGG 0.715435 5.2:-15179208 MS.gene65332:CDS
GTGGGAGGTATATTGCTCAG+AGG 0.720598 5.2:-15180480 MS.gene65332:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAATTAGAAAAAAATATTAG+TGG + chr5.2:15178667-15178686 None:intergenic 10.0%
!! ATTTCAAAAATATTCTATAT+GGG - chr5.2:15178566-15178585 MS.gene65332:CDS 10.0%
!!! ATAATTTTAAAAATTATCAC+TGG + chr5.2:15178635-15178654 None:intergenic 10.0%
!! AATCATGAAAAACAAAAAAT+AGG + chr5.2:15177557-15177576 None:intergenic 15.0%
!! GATTTCAAAAATATTCTATA+TGG - chr5.2:15178565-15178584 MS.gene65332:CDS 15.0%
!!! ATTTGTAAATACATTTTGAT+TGG - chr5.2:15178959-15178978 MS.gene65332:CDS 15.0%
!!! CAAATAATACAAGTTTTTAT+AGG + chr5.2:15180102-15180121 None:intergenic 15.0%
!!! CATTTCTAAAATAAATATTG+TGG - chr5.2:15180237-15180256 MS.gene65332:intron 15.0%
!! CATGATCATAAAAAGAATAA+AGG + chr5.2:15180018-15180037 None:intergenic 20.0%
!!! AAACTTGTATTATTTGTTAC+TGG - chr5.2:15180106-15180125 MS.gene65332:intron 20.0%
!!! TAAATACATTTTGATTGGTT+TGG - chr5.2:15178964-15178983 MS.gene65332:CDS 20.0%
!!! TTTAAAAATTATCACTGGTT+GGG + chr5.2:15178630-15178649 None:intergenic 20.0%
!!! TTTTAAAAATTATCACTGGT+TGG + chr5.2:15178631-15178650 None:intergenic 20.0%
! AATTGGAATAGCTGAAAATT+GGG - chr5.2:15177804-15177823 MS.gene65332:intron 25.0%
! ACGTTAGAAACAAATACATT+TGG - chr5.2:15178115-15178134 MS.gene65332:intron 25.0%
! ATCTCTCTAACTTTATTCAA+TGG + chr5.2:15178941-15178960 None:intergenic 25.0%
! ATTAATAAAAAGAGACACAG+GGG - chr5.2:15179605-15179624 MS.gene65332:intron 25.0%
! ATTCCAATTCCAACAAAAAA+AGG + chr5.2:15177793-15177812 None:intergenic 25.0%
! ATTTGGTAGACATATTAGAA+TGG - chr5.2:15178132-15178151 MS.gene65332:intron 25.0%
! CATAAAAACTCTATCGTTTA+GGG + chr5.2:15179900-15179919 None:intergenic 25.0%
! CATTAATAAAAAGAGACACA+GGG - chr5.2:15179604-15179623 MS.gene65332:intron 25.0%
! CCAACAAAAAAAGGAATTAT+CGG + chr5.2:15177784-15177803 None:intergenic 25.0%
! CTTAAATTGTTGTATGCAAA+AGG - chr5.2:15179977-15179996 MS.gene65332:intron 25.0%
! CTTCATTAACTTAATCAAGA+TGG - chr5.2:15178461-15178480 MS.gene65332:CDS 25.0%
! GAAACTTTGAATTTCATTCT+CGG + chr5.2:15179931-15179950 None:intergenic 25.0%
! GACAAAAACAATGTAACATA+AGG + chr5.2:15177858-15177877 None:intergenic 25.0%
! GATTCATTTCTCATTTCATT+TGG + chr5.2:15180528-15180547 None:intergenic 25.0%
! GCTTAAAGTTATCAATCAAT+TGG + chr5.2:15178823-15178842 None:intergenic 25.0%
! GGTTTAATATGTGAAAAAAC+TGG - chr5.2:15179561-15179580 MS.gene65332:intron 25.0%
! TAGGTTTATTAGCTCAAATT+TGG - chr5.2:15177653-15177672 MS.gene65332:intron 25.0%
! TATTATGTTTGACCTATGTT+TGG - chr5.2:15178181-15178200 MS.gene65332:intron 25.0%
! TATTGGTGCAAATTAACAAA+CGG - chr5.2:15178318-15178337 MS.gene65332:intron 25.0%
! TCATAAAAACTCTATCGTTT+AGG + chr5.2:15179901-15179920 None:intergenic 25.0%
! TTTGGTAGACATATTAGAAT+GGG - chr5.2:15178133-15178152 MS.gene65332:intron 25.0%
!! CTTTTTATGATCATGTTGAA+GGG - chr5.2:15180023-15180042 MS.gene65332:intron 25.0%
!! GAAAATAGAAGAATGTTTTC+AGG + chr5.2:15179034-15179053 None:intergenic 25.0%
!! TCTTTTTATGATCATGTTGA+AGG - chr5.2:15180022-15180041 MS.gene65332:intron 25.0%
!! TTTGTTTGTTACTGAATGAA+TGG - chr5.2:15177703-15177722 MS.gene65332:intron 25.0%
!! TTTTTCATGATTTTCACATG+TGG - chr5.2:15177565-15177584 MS.gene65332:CDS 25.0%
!!! ATTCCTTTTTTTGTTGGAAT+TGG - chr5.2:15177787-15177806 MS.gene65332:intron 25.0%
!!! ATTTTTCTAGTAAACTGTTG+TGG - chr5.2:15179498-15179517 MS.gene65332:intron 25.0%
!!! GACAATTGGTTTGTTTTATT+TGG - chr5.2:15178414-15178433 MS.gene65332:intron 25.0%
!!! TTACAAGTCTTATTGAGAAA+AGG - chr5.2:15179137-15179156 MS.gene65332:CDS 25.0%
!!! TTGTTTGTTATGTTTTGTGT+AGG - chr5.2:15177634-15177653 MS.gene65332:CDS 25.0%
!!! TTTTTTTGCTGTCAAGATTT+AGG - chr5.2:15178015-15178034 MS.gene65332:intron 25.0%
AAACAATGTAACATAAGGTC+AGG + chr5.2:15177853-15177872 None:intergenic 30.0%
AAATGAATCTACTGTGGAAA+AGG - chr5.2:15180539-15180558 MS.gene65332:CDS 30.0%
AAGACAATTATTCTCATTCC+CGG + chr5.2:15177961-15177980 None:intergenic 30.0%
AAGACTTGTGATACCATAAA+TGG - chr5.2:15178055-15178074 MS.gene65332:intron 30.0%
AAGTCTAGTAGAAATATCGA+CGG - chr5.2:15179238-15179257 MS.gene65332:intron 30.0%
AATGAGAAATGAATCTACTG+TGG - chr5.2:15180533-15180552 MS.gene65332:CDS 30.0%
ACAACAAACTTTGAATTCGA+TGG + chr5.2:15178800-15178819 None:intergenic 30.0%
ACATGAAGAAAAGATGAACT+TGG + chr5.2:15178535-15178554 None:intergenic 30.0%
AGTATAAGAAGAACATACAG+AGG + chr5.2:15177518-15177537 None:intergenic 30.0%
ATATTAAAACAACAGTCTCC+TGG - chr5.2:15178488-15178507 MS.gene65332:CDS 30.0%
ATCAAATACAGCCATTACAA+AGG - chr5.2:15178911-15178930 MS.gene65332:CDS 30.0%
ATGAGAAATTGTTCAAAACC+AGG + chr5.2:15179866-15179885 None:intergenic 30.0%
ATTGAAGTGTATCCAAACAT+AGG + chr5.2:15178196-15178215 None:intergenic 30.0%
ATTGGTGCAAATTAACAAAC+GGG - chr5.2:15178319-15178338 MS.gene65332:intron 30.0%
ATTTATGGTATCACAAGTCT+TGG + chr5.2:15178056-15178075 None:intergenic 30.0%
CAACAAACTTTGAATTCGAT+GGG + chr5.2:15178799-15178818 None:intergenic 30.0%
CATGTACCATTTATGTTTGT+TGG - chr5.2:15177930-15177949 MS.gene65332:intron 30.0%
CCATTAATAAAAAGAGACAC+AGG - chr5.2:15179603-15179622 MS.gene65332:intron 30.0%
GAATTGGAATAGCTGAAAAT+TGG - chr5.2:15177803-15177822 MS.gene65332:intron 30.0%
GATGAAACATAATACTATGG+GGG - chr5.2:15178155-15178174 MS.gene65332:intron 30.0%
GGATATTAATCTTAGCAACA+GGG + chr5.2:15178514-15178533 None:intergenic 30.0%
GGATGAAACATAATACTATG+GGG - chr5.2:15178154-15178173 MS.gene65332:intron 30.0%
GGGATGAAACATAATACTAT+GGG - chr5.2:15178153-15178172 MS.gene65332:intron 30.0%
GTACTAAATAATATGTGTCC+TGG - chr5.2:15179845-15179864 MS.gene65332:intron 30.0%
GTACTTCCAACAAACATAAA+TGG + chr5.2:15177939-15177958 None:intergenic 30.0%
TAGGTTCTATAGAAATAGCA+TGG + chr5.2:15180083-15180102 None:intergenic 30.0%
TGAGAATAATTGTCTTTCTC+AGG - chr5.2:15177965-15177984 MS.gene65332:intron 30.0%
TGGATATTAATCTTAGCAAC+AGG + chr5.2:15178515-15178534 None:intergenic 30.0%
TGGGATGAAACATAATACTA+TGG - chr5.2:15178152-15178171 MS.gene65332:intron 30.0%
TGTAAATAACATATCTCCAG+TGG + chr5.2:15179434-15179453 None:intergenic 30.0%
TTGTAGCTTCTCAAAAATCA+CGG + chr5.2:15178241-15178260 None:intergenic 30.0%
! ATTGATAACTTTAAGCACAC+AGG - chr5.2:15178827-15178846 MS.gene65332:CDS 30.0%
! CCTGTGTCTCTTTTTATTAA+TGG + chr5.2:15179606-15179625 None:intergenic 30.0%
! GATATGTTATTTACACCCAA+AGG - chr5.2:15179439-15179458 MS.gene65332:intron 30.0%
! TTTATGTTTGTTGGAAGTAC+CGG - chr5.2:15177939-15177958 MS.gene65332:intron 30.0%
!! AAGATTTAGGAGCCATTTTA+TGG - chr5.2:15178028-15178047 MS.gene65332:intron 30.0%
!!! AGGAGACTGTTGTTTTAATA+TGG + chr5.2:15178489-15178508 None:intergenic 30.0%
!!! CCGATAATTCCTTTTTTTGT+TGG - chr5.2:15177781-15177800 MS.gene65332:intron 30.0%
AAATGAAACATGCTGACAGT+GGG + chr5.2:15180222-15180241 None:intergenic 35.0%
AATCCAAGGATTACTTTGAC+CGG - chr5.2:15180304-15180323 MS.gene65332:intron 35.0%
ACTGTGGAAAAGGTTAATGT+TGG - chr5.2:15180549-15180568 MS.gene65332:CDS 35.0%
AGACTTCAGTATAACTTCAG+GGG + chr5.2:15179356-15179375 None:intergenic 35.0%
AGAGAACAAAACAGGACAAT+TGG - chr5.2:15178400-15178419 MS.gene65332:intron 35.0%
AGTATCATAAGCAAGCCAAA+CGG + chr5.2:15177491-15177510 None:intergenic 35.0%
AGTCTAGTAGAAATATCGAC+GGG - chr5.2:15179239-15179258 MS.gene65332:intron 35.0%
ATAAGAAGAACATACAGAGG+TGG + chr5.2:15177515-15177534 None:intergenic 35.0%
CAAGTCTTGGATCCATAAAA+TGG + chr5.2:15178043-15178062 None:intergenic 35.0%
CAGACTTCAGTATAACTTCA+GGG + chr5.2:15179357-15179376 None:intergenic 35.0%
GAATAGCTGAAAATTGGGAA+TGG - chr5.2:15177809-15177828 MS.gene65332:intron 35.0%
GATTACTTGCATAGTGAACT+TGG - chr5.2:15178986-15179005 MS.gene65332:CDS 35.0%
GTGATCTAAAAAGGATTCGT+AGG - chr5.2:15180331-15180350 MS.gene65332:intron 35.0%
TAAATGGCACGAGTTAATGT+AGG - chr5.2:15178071-15178090 MS.gene65332:intron 35.0%
TATATTGCTCAGAGGAAACT+TGG - chr5.2:15177448-15177467 MS.gene65332:CDS 35.0%
TATGAGCAACCTTCAAATCA+AGG - chr5.2:15180572-15180591 MS.gene65332:CDS 35.0%
TCAATCAGCAATTTGTCAAG+TGG + chr5.2:15180369-15180388 None:intergenic 35.0%
TCAATGGAAGACCTTTGTAA+TGG + chr5.2:15178925-15178944 None:intergenic 35.0%
TCTCAAAATCCAGAAAAGTG+CGG - chr5.2:15178712-15178731 MS.gene65332:CDS 35.0%
TGATCATGTTGAAGGGAAAA+TGG - chr5.2:15180030-15180049 MS.gene65332:intron 35.0%
TTCTTTCAACCATTGCTGAT+GGG - chr5.2:15178771-15178790 MS.gene65332:CDS 35.0%
TTGTTCTTCTTCATCAGGAT+CGG - chr5.2:15177342-15177361 MS.gene65332:CDS 35.0%
! ACTTTCCTACCTTGATTTGA+AGG + chr5.2:15180584-15180603 None:intergenic 35.0%
! ATGTCTTGTTCTTCTTCATC+AGG - chr5.2:15177337-15177356 MS.gene65332:CDS 35.0%
! ATGTTATTTACACCCAAAGG+TGG - chr5.2:15179442-15179461 MS.gene65332:intron 35.0%
! ATTCTTTTATAGCCCATGTG+AGG - chr5.2:15179819-15179838 MS.gene65332:intron 35.0%
! GAGTGAAAGTGTAAAACAAG+TGG - chr5.2:15178347-15178366 MS.gene65332:intron 35.0%
! TATGGTTAACGAGTTTTCAG+AGG - chr5.2:15179540-15179559 MS.gene65332:intron 35.0%
! TTCTTTTATAGCCCATGTGA+GGG - chr5.2:15179820-15179839 MS.gene65332:intron 35.0%
!! ACATTAACTCGTGCCATTTA+TGG + chr5.2:15178071-15178090 None:intergenic 35.0%
!! TACAACTTGTAGCTTTGAAG+TGG - chr5.2:15178256-15178275 MS.gene65332:intron 35.0%
!! TGATAGTGTGAAAAGTGTCA+GGG - chr5.2:15179755-15179774 MS.gene65332:intron 35.0%
!! TTATGTTTGTTGGAAGTACC+GGG - chr5.2:15177940-15177959 MS.gene65332:intron 35.0%
!! TTGATAGTGTGAAAAGTGTC+AGG - chr5.2:15179754-15179773 MS.gene65332:intron 35.0%
!! TTGTCCTGTTTTGTTCTCTT+TGG + chr5.2:15178399-15178418 None:intergenic 35.0%
!!! AGATGCAAGATTGTCGATTT+TGG - chr5.2:15179271-15179290 MS.gene65332:intron 35.0%
AAAGAACGTTGATCTCGTGA+AGG + chr5.2:15178757-15178776 None:intergenic 40.0%
AAGAACGTTGATCTCGTGAA+GGG + chr5.2:15178756-15178775 None:intergenic 40.0%
ACAGCTTCAATTGAAGGAAG+AGG - chr5.2:15179205-15179224 MS.gene65332:CDS 40.0%
AGCAACCTTCAAATCAAGGT+AGG - chr5.2:15180576-15180595 MS.gene65332:CDS 40.0%
AGCTATCACCAAGAAACTCA+AGG + chr5.2:15178880-15178899 None:intergenic 40.0%
ATGAGGGATTTGAGTCCTAT+CGG - chr5.2:15177374-15177393 MS.gene65332:CDS 40.0%
ATGATCCTGAAATCAGCACA+AGG + chr5.2:15180146-15180165 None:intergenic 40.0%
ATTCCTTCTCTGTAGACATG+TGG - chr5.2:15179380-15179399 MS.gene65332:intron 40.0%
ATTTAGTACCTCCCTCACAT+GGG + chr5.2:15179834-15179853 None:intergenic 40.0%
CACAGAAACAAACAGGCTAT+TGG - chr5.2:15178301-15178320 MS.gene65332:intron 40.0%
CCAGACTTCAGTATAACTTC+AGG + chr5.2:15179358-15179377 None:intergenic 40.0%
CCTGAAGTTATACTGAAGTC+TGG - chr5.2:15179355-15179374 MS.gene65332:intron 40.0%
CGAACCAAAGAGAACAAAAC+AGG - chr5.2:15178392-15178411 MS.gene65332:intron 40.0%
CGTGCAGTTGCTAAAATATC+GGG - chr5.2:15179178-15179197 MS.gene65332:CDS 40.0%
GAAATGAAACATGCTGACAG+TGG + chr5.2:15180223-15180242 None:intergenic 40.0%
GATCTAAAAGGGTCTTTGGA+AGG + chr5.2:15179067-15179086 None:intergenic 40.0%
GCGTGCAGTTGCTAAAATAT+CGG - chr5.2:15179177-15179196 MS.gene65332:CDS 40.0%
GGAAGAACAGCTTCAATTGA+AGG - chr5.2:15179199-15179218 MS.gene65332:CDS 40.0%
GTTCTTTCAACCATTGCTGA+TGG - chr5.2:15178770-15178789 MS.gene65332:CDS 40.0%
TATTTAGTACCTCCCTCACA+TGG + chr5.2:15179835-15179854 None:intergenic 40.0%
TCTGGCGCAAAATCAAAAAG+TGG + chr5.2:15180444-15180463 None:intergenic 40.0%
TCTTTCAACCATTGCTGATG+GGG - chr5.2:15178772-15178791 MS.gene65332:CDS 40.0%
TGTGGCATATCTAATGCTTG+TGG - chr5.2:15180255-15180274 MS.gene65332:intron 40.0%
TTAAGCACACAGGTCCAAAT+GGG - chr5.2:15178837-15178856 MS.gene65332:CDS 40.0%
TTATTTACACCCAAAGGTGG+TGG - chr5.2:15179445-15179464 MS.gene65332:intron 40.0%
TTTAAGCACACAGGTCCAAA+TGG - chr5.2:15178836-15178855 MS.gene65332:CDS 40.0%
! CTTTGGTTCGATATTCTCAG+TGG + chr5.2:15178382-15178401 None:intergenic 40.0%
! TCCAAAGACCCTTTTAGATC+CGG - chr5.2:15179067-15179086 MS.gene65332:CDS 40.0%
! TCCTTTTTAGATCACCATGC+CGG + chr5.2:15180326-15180345 None:intergenic 40.0%
! TGTGGATTGCAGATTGCAAT+TGG - chr5.2:15180273-15180292 MS.gene65332:intron 40.0%
!! AATGTCCTTGTGCTGATTTC+AGG - chr5.2:15180138-15180157 MS.gene65332:intron 40.0%
!! CAATAGCCTGTTTGTTTCTG+TGG + chr5.2:15178303-15178322 None:intergenic 40.0%
!! CGATTTTGGAAATGCGTGTT+GGG - chr5.2:15179285-15179304 MS.gene65332:intron 40.0%
!! GTCAGGTTTTGTGAATTGTG+AGG + chr5.2:15177836-15177855 None:intergenic 40.0%
!! TCGATTTTGGAAATGCGTGT+TGG - chr5.2:15179284-15179303 MS.gene65332:intron 40.0%
!! TTTCAGGCTTTAAGTCTGTG+TGG + chr5.2:15179018-15179037 None:intergenic 40.0%
AAGGATTACTTTGACCGGCA+TGG - chr5.2:15180309-15180328 MS.gene65332:intron 45.0%
AATTGGTGGAGCTCAATCCA+AGG - chr5.2:15180290-15180309 MS.gene65332:intron 45.0%
ACAAGGTTATAGCGAGGATG+AGG - chr5.2:15179468-15179487 MS.gene65332:intron 45.0%
ACCGGCATGGTGATCTAAAA+AGG - chr5.2:15180322-15180341 MS.gene65332:intron 45.0%
AGACCACATGTCTACAGAGA+AGG + chr5.2:15179386-15179405 None:intergenic 45.0%
ATAACCTTGTCCACCACCTT+TGG + chr5.2:15179458-15179477 None:intergenic 45.0%
ATCATAAGCAAGCCAAACGG+TGG + chr5.2:15177488-15177507 None:intergenic 45.0%
ATGCCGGTCAAAGTAATCCT+TGG + chr5.2:15180310-15180329 None:intergenic 45.0%
ATGGTATCCACCTTTCCGAT+AGG + chr5.2:15177392-15177411 None:intergenic 45.0%
ATTCATTGCAGTTCAGCCAG+GGG + chr5.2:15180500-15180519 None:intergenic 45.0%
CAGAAAAACGACCAACTGCA+CGG - chr5.2:15180460-15180479 MS.gene65332:CDS 45.0%
GAAACTCAAGGACCATGCAA+TGG + chr5.2:15178868-15178887 None:intergenic 45.0%
GATTCATTGCAGTTCAGCCA+GGG + chr5.2:15180501-15180520 None:intergenic 45.0%
GGATCATCTTGCCTTGATGA+TGG - chr5.2:15180159-15180178 MS.gene65332:intron 45.0%
GGATTGCAGATTGCAATTGG+TGG - chr5.2:15180276-15180295 MS.gene65332:intron 45.0%
GGATTTGAGTCCTATCGGAA+AGG - chr5.2:15177379-15177398 MS.gene65332:CDS 45.0%
TAACCTTGTCCACCACCTTT+GGG + chr5.2:15179457-15179476 None:intergenic 45.0%
TAGAGTCGCTGATCAATTCG+CGG - chr5.2:15177417-15177436 MS.gene65332:CDS 45.0%
TCCGGATCTAAAAGGGTCTT+TGG + chr5.2:15179071-15179090 None:intergenic 45.0%
TGATTCATTGCAGTTCAGCC+AGG + chr5.2:15180502-15180521 None:intergenic 45.0%
TGCATGGTCCTTGAGTTTCT+TGG - chr5.2:15178869-15178888 MS.gene65332:CDS 45.0%
TGCTCAGAGGAAACTTGGTT+GGG - chr5.2:15177453-15177472 MS.gene65332:CDS 45.0%
TTAATCTTAGCAACAGGGCC+AGG + chr5.2:15178509-15178528 None:intergenic 45.0%
TTCTTCTTCATCAGGATCGG+AGG - chr5.2:15177345-15177364 MS.gene65332:CDS 45.0%
TTGCTCAGAGGAAACTTGGT+TGG - chr5.2:15177452-15177471 MS.gene65332:CDS 45.0%
TTTGAGTCCTATCGGAAAGG+TGG - chr5.2:15177382-15177401 MS.gene65332:CDS 45.0%
! GACTCTCCCCAACTTTAGAA+CGG - chr5.2:15179089-15179108 MS.gene65332:CDS 45.0%
! TTTTATAGCCCATGTGAGGG+AGG - chr5.2:15179823-15179842 MS.gene65332:intron 45.0%
!! AGCCTGTTTGTTTCTGTGGT+GGG + chr5.2:15178299-15178318 None:intergenic 45.0%
!! CCAACTTTAGAACGGACTGA+GGG - chr5.2:15179097-15179116 MS.gene65332:CDS 45.0%
!! CCTCAGTCCGTTCTAAAGTT+GGG + chr5.2:15179099-15179118 None:intergenic 45.0%
!! CTCAGTCCGTTCTAAAGTTG+GGG + chr5.2:15179098-15179117 None:intergenic 45.0%
!! TAGCCTGTTTGTTTCTGTGG+TGG + chr5.2:15178300-15178319 None:intergenic 45.0%
!! TTCTAAAGTTGGGGAGAGTC+CGG + chr5.2:15179089-15179108 None:intergenic 45.0%
!!! TTAAATTTGATTTAATAATA+TGG - chr5.2:15179522-15179541 MS.gene65332:intron 5.0%
AAATCACGGCCAACTTGCGT+CGG + chr5.2:15178227-15178246 None:intergenic 50.0%
AAATGGGCAGCACCATTGCA+TGG - chr5.2:15178853-15178872 MS.gene65332:CDS 50.0%
AAGGGCAGCCTGAACAAACT+CGG + chr5.2:15178738-15178757 None:intergenic 50.0%
ACTGAGGGAAACACAAACGG+TGG - chr5.2:15179112-15179131 MS.gene65332:CDS 50.0%
AGAGTCGCTGATCAATTCGC+GGG - chr5.2:15177418-15177437 MS.gene65332:CDS 50.0%
AGGATCGGAGGAAGATGATG+AGG - chr5.2:15177357-15177376 MS.gene65332:CDS 50.0%
ATTGCTTTCGAGCTTGCCAC+TGG - chr5.2:15179415-15179434 MS.gene65332:intron 50.0%
CGGACTGAGGGAAACACAAA+CGG - chr5.2:15179109-15179128 MS.gene65332:CDS 50.0%
CTCCCACCACAGAAACAAAC+AGG - chr5.2:15178294-15178313 MS.gene65332:intron 50.0%
GATCAGCGACTCTAACAGCA+TGG + chr5.2:15177411-15177430 None:intergenic 50.0%
GCTCAGAGGAAACTTGGTTG+GGG - chr5.2:15177454-15177473 MS.gene65332:CDS 50.0%
GGATCGGAGGAAGATGATGA+GGG - chr5.2:15177358-15177377 MS.gene65332:CDS 50.0%
GGGAGAGTCCGGATCTAAAA+GGG + chr5.2:15179078-15179097 None:intergenic 50.0%
TCCGAGGAGTTCCATCATCA+AGG + chr5.2:15180173-15180192 None:intergenic 50.0%
! GTGGGAGGTATATTGCTCAG+AGG - chr5.2:15177440-15177459 MS.gene65332:CDS 50.0%
! TGGTGGACAAGGTTATAGCG+AGG - chr5.2:15179462-15179481 MS.gene65332:intron 50.0%
!! ATGCAATGGTGCTGCCCATT+TGG + chr5.2:15178854-15178873 None:intergenic 50.0%
!! CCCAACTTTAGAACGGACTG+AGG - chr5.2:15179096-15179115 MS.gene65332:CDS 50.0%
!! CCCTCAGTCCGTTCTAAAGT+TGG + chr5.2:15179100-15179119 None:intergenic 50.0%
!! CTGTTTGTTTCTGTGGTGGG+AGG + chr5.2:15178296-15178315 None:intergenic 50.0%
!! GCCTTGATGATGGAACTCCT+CGG - chr5.2:15180169-15180188 MS.gene65332:intron 50.0%
!!! CGTGCAGTTGGTCGTTTTTC+TGG + chr5.2:15180462-15180481 None:intergenic 50.0%
AACTCCTCGGAAAGATGCCC+CGG - chr5.2:15180182-15180201 MS.gene65332:intron 55.0%
AATCACGGCCAACTTGCGTC+GGG + chr5.2:15178226-15178245 None:intergenic 55.0%
GGGGAGAGTCCGGATCTAAA+AGG + chr5.2:15179079-15179098 None:intergenic 55.0%
GGGGTCAATTCTCCACCGTT+TGG - chr5.2:15177473-15177492 MS.gene65332:CDS 55.0%
TACCACATCCCGACGCAAGT+TGG - chr5.2:15178215-15178234 MS.gene65332:intron 55.0%
TCGCTGATCAATTCGCGGGT+GGG - chr5.2:15177422-15177441 MS.gene65332:CDS 55.0%
! AAGTGCGGCCGAGTTTGTTC+AGG - chr5.2:15178727-15178746 MS.gene65332:CDS 55.0%
! CAAACTCGGCCGCACTTTTC+TGG + chr5.2:15178724-15178743 None:intergenic 55.0%
! GTGGGAGTGTACTCACCTTC+CGG + chr5.2:15180204-15180223 None:intergenic 55.0%
! TGCAGGTATTGCCGTGCAGT+TGG + chr5.2:15180474-15180493 None:intergenic 55.0%
! TGGGAGTGTACTCACCTTCC+GGG + chr5.2:15180203-15180222 None:intergenic 55.0%
!! ACACCCAAAGGTGGTGGACA+AGG - chr5.2:15179451-15179470 MS.gene65332:intron 55.0%
CGATGGGTCCCCATCAGCAA+TGG + chr5.2:15178783-15178802 None:intergenic 60.0%
CTGATCAATTCGCGGGTGGG+AGG - chr5.2:15177425-15177444 MS.gene65332:CDS 60.0%
GGCAATACCTGCAACACCCC+TGG - chr5.2:15180481-15180500 MS.gene65332:CDS 60.0%
GTCGCTGATCAATTCGCGGG+TGG - chr5.2:15177421-15177440 MS.gene65332:CDS 60.0%
! GGGAGTGTACTCACCTTCCG+GGG + chr5.2:15180202-15180221 None:intergenic 60.0%
!! AGTTCAGCCAGGGGTGTTGC+AGG + chr5.2:15180491-15180510 None:intergenic 60.0%
CCTCGGAAAGATGCCCCGGA+AGG - chr5.2:15180186-15180205 MS.gene65332:intron 65.0%
GGCCAACTTGCGTCGGGATG+TGG + chr5.2:15178220-15178239 None:intergenic 65.0%
! CCTTCCGGGGCATCTTTCCG+AGG + chr5.2:15180189-15180208 None:intergenic 65.0%


Chromosome Type Strat End Strand Name
chr5.2 gene 15177337 15180605 15177337 ID=MS.gene65332
chr5.2 mRNA 15177337 15180605 15177337 ID=MS.gene65332.t1;Parent=MS.gene65332
chr5.2 exon 15180423 15180605 15180423 ID=MS.gene65332.t1.exon1;Parent=MS.gene65332.t1
chr5.2 CDS 15180423 15180605 15180423 ID=cds.MS.gene65332.t1;Parent=MS.gene65332.t1
chr5.2 exon 15178453 15179241 15178453 ID=MS.gene65332.t1.exon2;Parent=MS.gene65332.t1
chr5.2 CDS 15178453 15179241 15178453 ID=cds.MS.gene65332.t1;Parent=MS.gene65332.t1
chr5.2 exon 15177735 15177782 15177735 ID=MS.gene65332.t1.exon3;Parent=MS.gene65332.t1
chr5.2 CDS 15177735 15177782 15177735 ID=cds.MS.gene65332.t1;Parent=MS.gene65332.t1
chr5.2 exon 15177337 15177657 15177337 ID=MS.gene65332.t1.exon4;Parent=MS.gene65332.t1
chr5.2 CDS 15177337 15177657 15177337 ID=cds.MS.gene65332.t1;Parent=MS.gene65332.t1
Gene Sequence

>MS.gene65332

ATGTCTTGTTCTTCTTCATCAGGATCGGAGGAAGATGATGAGGGATTTGAGTCCTATCGGAAAGGTGGATACCATGCTGTTAGAGTCGCTGATCAATTCGCGGGTGGGAGGTATATTGCTCAGAGGAAACTTGGTTGGGGTCAATTCTCCACCGTTTGGCTTGCTTATGATACTACCACCTCTGTATGTTCTTCTTATACTTTTGTTTTCAATTCAACCTATTTTTTGTTTTTCATGATTTTCACATGTGGTTCATGTTTTAGATTTGAAAGTTTTTTTTCTTTGTTTTGTTTATGATTGTTTGTTATGTTTTGTGTAGGTTTATTAGCTCAAATTTGGTTGATTTGTTTGTTTAATGATGTTTTTTTTGTTTGTTACTGAATGAATGGATCTAATTCAGATTTTTTTTTTCTTCTTTTGTTCAATGTGTTACAATTACAAATTCCGATAATTCCTTTTTTTGTTGGAATTGGAATAGCTGAAAATTGGGAATGGTCCTCACAATTCACAAAACCTGACCTTATGTTACATTGTTTTTGTCTTTATGTACAAAAGCAATAAATGTGTCTTTTATATCAAATCTAACACATGTACATGTACCATTTATGTTTGTTGGAAGTACCGGGAATGAGAATAATTGTCTTTCTCAGGTTAATTTTTGATTCAGTAGTTTTTTTGTTTTTTTGCTGTCAAGATTTAGGAGCCATTTTATGGATCCAAGACTTGTGATACCATAAATGGCACGAGTTAATGTAGGATCTTTCTAGTGTTTGAATTGACGTTAGAAACAAATACATTTGGTAGACATATTAGAATGGGATGAAACATAATACTATGGGGGCTATATTATGTTTGACCTATGTTTGGATACACTTCAATACCACATCCCGACGCAAGTTGGCCGTGATTTTTGAGAAGCTACAACTTGTAGCTTTGAAGTGGATGCGAGTTTAACTCCTCCCACCACAGAAACAAACAGGCTATTGGTGCAAATTAACAAACGGGACACAGAGTGAAAGTGTAAAACAAGTGGTACTCAATTCCACTGAGAATATCGAACCAAAGAGAACAAAACAGGACAATTGGTTTGTTTTATTTGGTTGCTATGTGTTACTTACATCACTCTTCATTAACTTAATCAAGATGGTTCCATATTAAAACAACAGTCTCCTGGCCCTGTTGCTAAGATTAATATCCAAGTTCATCTTTTCTTCATGTATTTATGTTTGATTTCAAAAATATTCTATATGGGTAAACAATTATGAGTGTGCATGTATTGCTTTGTGTTTGCCCAACCAGTGATAATTTTTAAAATTATTTTTGCGCACCACTAATATTTTTTTCTAATTTTTTCTTTTTTTCAGTCATACGTTGCTCTCAAAATCCAGAAAAGTGCGGCCGAGTTTGTTCAGGCTGCCCTTCACGAGATCAACGTTCTTTCAACCATTGCTGATGGGGACCCATCGAATTCAAAGTTTGTTGTCCAATTGATTGATAACTTTAAGCACACAGGTCCAAATGGGCAGCACCATTGCATGGTCCTTGAGTTTCTTGGTGATAGCTTGCTTCGTTTGATCAAATACAGCCATTACAAAGGTCTTCCATTGAATAAAGTTAGAGAGATTTGTAAATACATTTTGATTGGTTTGGATTACTTGCATAGTGAACTTGGTATAATCCACACAGACTTAAAGCCTGAAAACATTCTTCTATTTTCAACTATTGATCCTTCCAAAGACCCTTTTAGATCCGGACTCTCCCCAACTTTAGAACGGACTGAGGGAAACACAAACGGTGGACTTACAAGTCTTATTGAGAAAAGGCTGAAGAGAAGAGCAAAGCGTGCAGTTGCTAAAATATCGGGAAGAACAGCTTCAATTGAAGGAAGAGGAGAAGCTGCAAAGTCTAGTAGAAATATCGACGGGATTGATGTGAGATGCAAGATTGTCGATTTTGGAAATGCGTGTTGGGCTGATAACAAGTTTGCAGAAGAAATACAGACAAGACAATATAGAGCCCCTGAAGTTATACTGAAGTCTGGTTATTCCTTCTCTGTAGACATGTGGTCTTTTGCTTGCATTGCTTTCGAGCTTGCCACTGGAGATATGTTATTTACACCCAAAGGTGGTGGACAAGGTTATAGCGAGGATGAGGTATGCTGATTTTTCTAGTAAACTGTTGTGGTTTAAATTTGATTTAATAATATGGTTAACGAGTTTTCAGAGGTTTAATATGTGAAAAAACTGGTTTAATTAGCTCAATTACACCATTAATAAAAAGAGACACAGGGGCATATTTCATTGAATCAGCTTGTAATACTAATGCATAATATGCATTAGTTTAAATGTCTGATTAGTTTACAAACTTTCTACATGTTTTGATATGTACATTTTCATTTTTTACTTAAGAAAATAGTTTTGATAGTGTGAAAAGTGTCAGGGATATCAGATTTTACTTCTATTCACTGTTTTATATATTTATGATTCTTTTATAGCCCATGTGAGGGAGGTACTAAATAATATGTGTCCTGGTTTTGAACAATTTCTCATCGTTTTTATTTCCCTAAACGATAGAGTTTTTATGATCTCAGACCGAGAATGAAATTCAAAGTTTCATGCTAGTGATCTATCATTGATAACTCTTAAATTGTTGTATGCAAAAGGCTATATATATTGTATCCTTTATTCTTTTTATGATCATGTTGAAGGGAAAATGGTCAAGATATATTTGTTTGCATTGAGTTCCATGCTATTTCTATAGAACCTATAAAAACTTGTATTATTTGTTACTGGAATAATAAAAATGTCCTTGTGCTGATTTCAGGATCATCTTGCCTTGATGATGGAACTCCTCGGAAAGATGCCCCGGAAGGTGAGTACACTCCCACTGTCAGCATGTTTCATTTCTAAAATAAATATTGTGGCATATCTAATGCTTGTGGATTGCAGATTGCAATTGGTGGAGCTCAATCCAAGGATTACTTTGACCGGCATGGTGATCTAAAAAGGATTCGTAGGCTAAAATTTTGTCCACTTGACAAATTGCTGATTGATAGATATAAATTTTCAGCGAATGATGCTCAAGAGTTTTCAGAATTTCTTTTGCCACTTTTTGATTTTGCGCCAGAAAAACGACCAACTGCACGGCAATACCTGCAACACCCCTGGCTGAACTGCAATGAATCAGCGCCAAATGAAATGAGAAATGAATCTACTGTGGAAAAGGTTAATGTTGGTATGAGCAACCTTCAAATCAAGGTAGGAAAGTGA
Protein sequence

>MS.gene65332.t1

MSCSSSSGSEEDDEGFESYRKGGYHAVRVADQFAGGRYIAQRKLGWGQFSTVWLAYDTTTSSYVALKIQKSAAEFVQAALHEINVLSTIADGDPSNSKFVVQLIDNFKHTGPNGQHHCMVLEFLGDSLLRLIKYSHYKGLPLNKVREICKYILIGLDYLHSELGIIHTDLKPENILLFSTIDPSKDPFRSGLSPTLERTEGNTNGGLTSLIEKRLKRRAKRAVAKISGRTASIEGRGEAAKSSRNIDGIDVRCKIVDFGNACWADNKFAEEIQTRQYRAPEVILKSGYSFSVDMWSFACIAFELATGDMLFTPKGGGQGYSEDEDHLALMMELLGKMPRKIAIGGAQSKDYFDRHGDLKRIRRLKFCPLDKLLIDRYKFSANDAQEFSEFLLPLFDFAPEKRPTARQYLQHPWLNCNESAPNEMRNESTVEKVNVGMSNLQIKVGK