Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene038286.t1 | XP_003617387.2 | 99 | 922 | 9 | 0 | 1 | 922 | 1 | 922 | 0.00E+00 | 1744.6 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene038286.t1 | Q8H1U4 | 65.8 | 916 | 304 | 4 | 1 | 913 | 1 | 910 | 0.0e+00 | 1115.5 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene038286.t1 | G7K3C1 | 99.0 | 922 | 9 | 0 | 1 | 922 | 1 | 922 | 0.0e+00 | 1744.6 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene038286 | MS.gene56142 | PPI |
| MS.gene038286 | MS.gene25107 | PPI |
| MS.gene038286 | MS.gene059371 | PPI |
| MS.gene038286 | MS.gene26468 | PPI |
| MS.gene038286 | MS.gene059370 | PPI |
| MS.gene038286 | MS.gene93612 | PPI |
| MS.gene038286 | MS.gene032323 | PPI |
| MS.gene038286 | MS.gene007855 | PPI |
| MS.gene038286 | MS.gene031482 | PPI |
| MS.gene038286 | MS.gene46213 | PPI |
| MS.gene038286 | MS.gene26890 | PPI |
| MS.gene038286 | MS.gene33573 | PPI |
| MS.gene038286 | MS.gene074437 | PPI |
| MS.gene038286 | MS.gene29661 | PPI |
| MS.gene038286 | MS.gene059369 | PPI |
| MS.gene038286 | MS.gene006458 | PPI |
| MS.gene038286 | MS.gene047859 | PPI |
| MS.gene038286 | MS.gene38996 | PPI |
| MS.gene038286 | MS.gene32240 | PPI |
| MS.gene038286 | MS.gene26467 | PPI |
| MS.gene038286 | MS.gene76069 | PPI |
| MS.gene038286 | MS.gene96778 | PPI |
| MS.gene038286 | MS.gene051100 | PPI |
| MS.gene038286 | MS.gene006802 | PPI |
| MS.gene038286 | MS.gene94232 | PPI |
| MS.gene038286 | MS.gene80048 | PPI |
| MS.gene038286 | MS.gene43131 | PPI |
| MS.gene038286 | MS.gene30421 | PPI |
| MS.gene038286 | MS.gene56523 | PPI |
| MS.gene038286 | MS.gene93598 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene038286.t1 | MTR_5g091020 | 99.132 | 922 | 8 | 0 | 1 | 922 | 1 | 922 | 0.0 | 1876 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene038286.t1 | AT1G06590 | 65.939 | 916 | 303 | 4 | 1 | 913 | 1 | 910 | 0.0 | 1174 |
Find 184 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CGAAGCTGATCAGGTTATTT+TGG | 0.134029 | 5.4:+71789180 | MS.gene038286:CDS |
| CTAATGAGTTCTTCCAATTT+TGG | 0.138756 | 5.4:-71788879 | None:intergenic |
| CAAGTTCATCACACAGTTTC+TGG | 0.154029 | 5.4:-71797417 | None:intergenic |
| TTTGGATGCGAACAGTAATT+TGG | 0.171286 | 5.4:+71789198 | MS.gene038286:CDS |
| CTGAGCTTCATGGAAGATTT+TGG | 0.180753 | 5.4:-71794788 | None:intergenic |
| TGTTGTTGTTTAGGAATAAT+TGG | 0.207157 | 5.4:+71789136 | MS.gene038286:intron |
| CAACATTTAGCAGTCTTTAA+AGG | 0.213041 | 5.4:+71797000 | MS.gene038286:CDS |
| TCAAACTTGCTGTTTGAAAA+TGG | 0.214893 | 5.4:+71792566 | MS.gene038286:CDS |
| GCCAAGTTGCTTCCCAGTTT+TGG | 0.226282 | 5.4:-71788920 | None:intergenic |
| ATATTCACCGTTTACTAGTA+TGG | 0.229148 | 5.4:+71792622 | MS.gene038286:CDS |
| TGAAATTGCTTTATTATGTT+TGG | 0.240051 | 5.4:+71792036 | MS.gene038286:CDS |
| ACTACCTTGGAAACGTTAAC+TGG | 0.242741 | 5.4:-71794818 | None:intergenic |
| GAAATTGCTTTATTATGTTT+GGG | 0.268224 | 5.4:+71792037 | MS.gene038286:CDS |
| GCTTTGGCATCACCTGTTAC+TGG | 0.276397 | 5.4:+71797442 | MS.gene038286:CDS |
| TCTGCGACAGCTACAGAAAT+TGG | 0.287798 | 5.4:+71790652 | MS.gene038286:CDS |
| TTCATTTCAGAAACATATAT+TGG | 0.294740 | 5.4:+71800637 | MS.gene038286:CDS |
| GGATGATGCATTTCCACTTT+GGG | 0.312657 | 5.4:+71792059 | MS.gene038286:CDS |
| GCAGTCATGTGATGATATTT+TGG | 0.317956 | 5.4:+71788854 | MS.gene038286:intron |
| TTGGATGCGAACAGTAATTT+GGG | 0.319904 | 5.4:+71789199 | MS.gene038286:CDS |
| CAGAAAATATTTGAACCATT+TGG | 0.320684 | 5.4:-71795039 | None:intergenic |
| CAAAGGCCCTTGTTATCATT+TGG | 0.320708 | 5.4:+71794764 | MS.gene038286:CDS |
| TGAGATTGATAAGCCAAAAC+TGG | 0.320794 | 5.4:+71788907 | MS.gene038286:CDS |
| ATAATTGGAGGTCCCGATTC+AGG | 0.332819 | 5.4:+71789151 | MS.gene038286:CDS |
| CCTCCATGACCAAGAATTAT+CGG | 0.342968 | 5.4:-71798926 | None:intergenic |
| TTCTGTCAGGATTCTGGATC+TGG | 0.349192 | 5.4:+71795057 | MS.gene038286:CDS |
| GTTGTTGGCTTCCAATCATT+TGG | 0.351718 | 5.4:+71792727 | MS.gene038286:CDS |
| CTTCGCCATTGCCAAATGAT+TGG | 0.353923 | 5.4:-71792738 | None:intergenic |
| TGGGCATCCAAAGCTGGCTT+TGG | 0.360157 | 5.4:+71792078 | MS.gene038286:CDS |
| TCTTAATTTATCACTCTGTT+TGG | 0.362155 | 5.4:-71790366 | None:intergenic |
| ACCTGTTACTGGTGTAGATA+TGG | 0.365708 | 5.4:+71797453 | MS.gene038286:CDS |
| TTTCAATTTGCTACCGTTTG+AGG | 0.370631 | 5.4:+71789249 | MS.gene038286:CDS |
| TTCACCTCCAAAGCCAGCTT+TGG | 0.375269 | 5.4:-71792085 | None:intergenic |
| TTTAAAGCTAAAACGGTTGT+TGG | 0.375594 | 5.4:+71792712 | MS.gene038286:CDS |
| TGCTCTGCAGTTTCATGAAT+TGG | 0.376439 | 5.4:+71800538 | MS.gene038286:intron |
| AATGGCGAAGTTTGATTTAA+CGG | 0.376800 | 5.4:+71792751 | MS.gene038286:CDS |
| TACGAAGAAACTAGTTTAGA+TGG | 0.377685 | 5.4:+71789954 | MS.gene038286:CDS |
| ATGTTGGTTGGGCACAGAAC+TGG | 0.377959 | 5.4:-71795098 | None:intergenic |
| CCGGCTGGTAATAATAGTTC+TGG | 0.380070 | 5.4:+71792007 | MS.gene038286:CDS |
| TTACTTTGGCGGTCTTCATA+TGG | 0.381475 | 5.4:-71790398 | None:intergenic |
| CCACTTTGGGCATCCAAAGC+TGG | 0.381512 | 5.4:+71792072 | MS.gene038286:CDS |
| GCAACAGCTTGGGAGTTATA+TGG | 0.382924 | 5.4:+71795171 | MS.gene038286:CDS |
| GCTGAGCTATGGCTCTCTCT+TGG | 0.386122 | 5.4:+71798857 | MS.gene038286:CDS |
| TGACAAACTTGGGCAATTAG+AGG | 0.387249 | 5.4:+71800595 | MS.gene038286:CDS |
| GGTAGTGCCGTTTCTTTGAA+TGG | 0.388272 | 5.4:+71790617 | MS.gene038286:CDS |
| ACTAAACTCAGAAGTGCATT+AGG | 0.400537 | 5.4:-71790110 | None:intergenic |
| TGATGATTATACTGCTGCTT+TGG | 0.403956 | 5.4:+71790824 | MS.gene038286:CDS |
| TCAAGCACTGCTGGGATACT+AGG | 0.406665 | 5.4:+71792593 | MS.gene038286:CDS |
| GGTAAACTAACCTCGTATAT+CGG | 0.408448 | 5.4:-71789009 | None:intergenic |
| TCCATATCTACACCAGTAAC+AGG | 0.408554 | 5.4:-71797454 | None:intergenic |
| AATGGCATCTCAAGCACTGC+TGG | 0.409205 | 5.4:+71792584 | MS.gene038286:CDS |
| CAGAAAATTTAAAGCTAAAA+CGG | 0.410366 | 5.4:+71792705 | MS.gene038286:CDS |
| GGGATGATGCATTTCCACTT+TGG | 0.412550 | 5.4:+71792058 | MS.gene038286:CDS |
| AATTCTTGGTCATGGAGGTT+TGG | 0.413839 | 5.4:+71798931 | MS.gene038286:CDS |
| AGAAGAAATTGAAGCAAGAA+AGG | 0.415329 | 5.4:+71790052 | MS.gene038286:CDS |
| TTCTGAAGAACTCCAACCTT+TGG | 0.419782 | 5.4:+71799531 | MS.gene038286:CDS |
| AAACTTACTCGATGCAGTTC+AGG | 0.424047 | 5.4:-71790677 | None:intergenic |
| GCCCAACCAACATCAATTCC+TGG | 0.424701 | 5.4:+71795108 | MS.gene038286:CDS |
| AGCTTCGATATCACCTGAAT+CGG | 0.425601 | 5.4:-71789164 | None:intergenic |
| TCCAGGAATTGATGTTGGTT+GGG | 0.434584 | 5.4:-71795109 | None:intergenic |
| TTTGCTTGCTGAGATTCATA+AGG | 0.436669 | 5.4:+71798229 | MS.gene038286:CDS |
| AAGTTCATCACACAGTTTCT+GGG | 0.437398 | 5.4:-71797416 | None:intergenic |
| TGCTAAAGTATATGCAAGAT+TGG | 0.437680 | 5.4:-71792537 | None:intergenic |
| GCACTTCTGAGTTTAGTAGA+TGG | 0.438748 | 5.4:+71790116 | MS.gene038286:CDS |
| ATCCAGGAATTGATGTTGGT+TGG | 0.441435 | 5.4:-71795110 | None:intergenic |
| GCATCCAAAGCTGGCTTTGG+AGG | 0.444711 | 5.4:+71792081 | MS.gene038286:CDS |
| GTGTGATGAACTTGGTGCTT+TGG | 0.447118 | 5.4:+71797426 | MS.gene038286:CDS |
| CTTCATGAGCATGCTTTACA+CGG | 0.452464 | 5.4:+71797285 | MS.gene038286:CDS |
| TGGGCATGTACTGAGCTTCA+TGG | 0.453351 | 5.4:-71794798 | None:intergenic |
| GAAAGGCTTGCTAAAGCATA+TGG | 0.453725 | 5.4:-71798779 | None:intergenic |
| CTCTTACTTTAGCTGAGCTA+TGG | 0.457524 | 5.4:+71798846 | MS.gene038286:CDS |
| GAGGTTTGGAGCTCCGCTCA+CGG | 0.457750 | 5.4:+71798945 | MS.gene038286:CDS |
| TATACTTCGTGCAACAGCTT+GGG | 0.460709 | 5.4:+71795161 | MS.gene038286:CDS |
| TGAAGAACTCCAACCTTTGG+AGG | 0.461943 | 5.4:+71799534 | MS.gene038286:CDS |
| GCCAAAACTGGGAAGCAACT+TGG | 0.464201 | 5.4:+71788919 | MS.gene038286:CDS |
| GTAGTGCCGTTTCTTTGAAT+GGG | 0.464451 | 5.4:+71790618 | MS.gene038286:CDS |
| TTCAAACCCATTCAAAGAAA+CGG | 0.465431 | 5.4:-71790624 | None:intergenic |
| ATTCTGCATATCATTTAACT+TGG | 0.466902 | 5.4:+71798802 | MS.gene038286:CDS |
| TGTCATAGACCATGGCCATC+AGG | 0.469456 | 5.4:-71800577 | None:intergenic |
| TGTTGGTTGGGCACAGAACT+GGG | 0.472742 | 5.4:-71795097 | None:intergenic |
| CCCGTACCATGTTACTTTGG+CGG | 0.476806 | 5.4:-71790409 | None:intergenic |
| GAAATACCCATACTAGTAAA+CGG | 0.476976 | 5.4:-71792629 | None:intergenic |
| TTTATATCTGGCAGGAACTC+AGG | 0.477934 | 5.4:+71794920 | MS.gene038286:intron |
| TCTAAACTAGTTTCTTCGTA+TGG | 0.481801 | 5.4:-71789951 | None:intergenic |
| CTTTGCTGCGAGCAAGGTAC+GGG | 0.483239 | 5.4:-71797506 | None:intergenic |
| GCTTTGCTGCGAGCAAGGTA+CGG | 0.484021 | 5.4:-71797507 | None:intergenic |
| AGGTGATATCGAAGCTGATC+AGG | 0.492525 | 5.4:+71789171 | MS.gene038286:CDS |
| CAATTGTTTGTTCTCTTGAG+AGG | 0.495715 | 5.4:+71792668 | MS.gene038286:CDS |
| CGCACAAACTGGCAGATACA+AGG | 0.495982 | 5.4:+71790461 | MS.gene038286:CDS |
| TTTCCGATAATTCTTGGTCA+TGG | 0.496921 | 5.4:+71798923 | MS.gene038286:CDS |
| CTTGCTTTGCTGATGCATCA+AGG | 0.501716 | 5.4:+71796379 | MS.gene038286:CDS |
| CTCAAGATCTACGCTCCTCC+AGG | 0.503478 | 5.4:+71788323 | MS.gene038286:CDS |
| AGTTCTGCAATGACAATTGA+TGG | 0.505348 | 5.4:+71794979 | MS.gene038286:CDS |
| AGCAGTTCGTGTTTCTCAGC+AGG | 0.505632 | 5.4:+71792263 | MS.gene038286:CDS |
| GACAAAAGTGCAGGGAAAGA+AGG | 0.506651 | 5.4:+71791968 | MS.gene038286:intron |
| TATTCACCGTTTACTAGTAT+GGG | 0.513278 | 5.4:+71792623 | MS.gene038286:CDS |
| AGGAATTTACAAAAGCCAAA+TGG | 0.514925 | 5.4:+71795024 | MS.gene038286:CDS |
| TATCCCGTACCATGTTACTT+TGG | 0.516958 | 5.4:-71790412 | None:intergenic |
| GGCTTCCAATCATTTGGCAA+TGG | 0.517340 | 5.4:+71792733 | MS.gene038286:CDS |
| GCAAGGTACGGGCATGGCGA+AGG | 0.518844 | 5.4:-71797495 | None:intergenic |
| CAGAAACTGTGTGATGAACT+TGG | 0.519173 | 5.4:+71797418 | MS.gene038286:CDS |
| CCTTCAGTACAGCTTGGCTC+AGG | 0.520226 | 5.4:+71795004 | MS.gene038286:CDS |
| GCTACAGATTCGAACGGAAA+AGG | 0.520404 | 5.4:-71788359 | None:intergenic |
| CTATGTGATACAAATTTCAA+TGG | 0.520415 | 5.4:+71798995 | MS.gene038286:CDS |
| GGTTCAGTGCCCGTGTGGCA+TGG | 0.523020 | 5.4:-71798886 | None:intergenic |
| AGGTTTGGAGCTCCGCTCAC+GGG | 0.524912 | 5.4:+71798946 | MS.gene038286:CDS |
| CTACCTTGGAAACGTTAACT+GGG | 0.525003 | 5.4:-71794817 | None:intergenic |
| ATATACTTCGTGCAACAGCT+TGG | 0.526105 | 5.4:+71795160 | MS.gene038286:CDS |
| ATTTGTAACACATGCAAAAG+AGG | 0.526228 | 5.4:-71798172 | None:intergenic |
| ACCGCCAAAGTAACATGGTA+CGG | 0.526359 | 5.4:+71790408 | MS.gene038286:CDS |
| GGAAAACGCCATACCTCAAA+CGG | 0.526617 | 5.4:-71789262 | None:intergenic |
| AGTACTTGCAAAACAGATCC+AGG | 0.526714 | 5.4:-71795126 | None:intergenic |
| ACTTGGGCAATTAGAGGAAA+GGG | 0.529233 | 5.4:+71800601 | MS.gene038286:CDS |
| AATGAGCTTTACATATGCTA+AGG | 0.532611 | 5.4:-71796977 | None:intergenic |
| GCCATGGTCTATGACAAACT+TGG | 0.534302 | 5.4:+71800584 | MS.gene038286:CDS |
| GTAGCTCAACATAATCGTCT+TGG | 0.536260 | 5.4:+71788377 | MS.gene038286:CDS |
| CTGGAGGAGCGTAGATCTTG+AGG | 0.540154 | 5.4:-71788322 | None:intergenic |
| TCCCTATGTTTGTTAAGAGA+CGG | 0.541201 | 5.4:-71789896 | None:intergenic |
| GTCTGCTTACCTCCAAAGGT+TGG | 0.541541 | 5.4:-71799543 | None:intergenic |
| ATGGTGCCTTCAGTACAGCT+TGG | 0.541706 | 5.4:+71794998 | MS.gene038286:CDS |
| TCTGCAGTTTCATGAATTGG+CGG | 0.545463 | 5.4:+71800541 | MS.gene038286:intron |
| GCTTCGATATCACCTGAATC+GGG | 0.550133 | 5.4:-71789163 | None:intergenic |
| AACTTGGGCAATTAGAGGAA+AGG | 0.550820 | 5.4:+71800600 | MS.gene038286:CDS |
| CAGAGTGATAAATTAAGAGT+AGG | 0.551438 | 5.4:+71790371 | MS.gene038286:CDS |
| ACAGATCCAGGAATTGATGT+TGG | 0.553520 | 5.4:-71795114 | None:intergenic |
| CTGCGAGCAAGGTACGGGCA+TGG | 0.554584 | 5.4:-71797501 | None:intergenic |
| TAAATGATATGCAGAATGAA+AGG | 0.559046 | 5.4:-71798796 | None:intergenic |
| TTAGGTGTATGAAGATGAAA+CGG | 0.559249 | 5.4:-71790092 | None:intergenic |
| TGCCGTCTCTTAACAAACAT+AGG | 0.559859 | 5.4:+71789894 | MS.gene038286:CDS |
| GCAGTCTTTAAAGGATACAA+AGG | 0.560313 | 5.4:+71797009 | MS.gene038286:CDS |
| TAAAGTCTGCTTACCTCCAA+AGG | 0.561354 | 5.4:-71799547 | None:intergenic |
| CTTCTCTGCAGCATGTTCAA+AGG | 0.566366 | 5.4:+71794747 | MS.gene038286:intron |
| GAATTGCTTTGCTGCGAGCA+AGG | 0.566474 | 5.4:-71797512 | None:intergenic |
| ATGCAGCGGACGTTTAAAGC+TGG | 0.567106 | 5.4:+71797393 | MS.gene038286:intron |
| GCCGTCTCTTAACAAACATA+GGG | 0.569130 | 5.4:+71789895 | MS.gene038286:CDS |
| CCATGGTCTATGACAAACTT+GGG | 0.572262 | 5.4:+71800585 | MS.gene038286:CDS |
| CGGGCACTGAACCTTGTCCA+TGG | 0.573001 | 5.4:+71798896 | MS.gene038286:CDS |
| GGCTGAAGCATTCTACCTGA+TGG | 0.574890 | 5.4:+71800562 | MS.gene038286:CDS |
| ATGGCATCTCAAGCACTGCT+GGG | 0.575777 | 5.4:+71792585 | MS.gene038286:CDS |
| AAACTAGTTTCTTCGTATGG+AGG | 0.578782 | 5.4:-71789948 | None:intergenic |
| AGAATACGAGAACATGGACT+TGG | 0.579108 | 5.4:+71790004 | MS.gene038286:CDS |
| CCAGAACTATTATTACCAGC+CGG | 0.579141 | 5.4:-71792007 | None:intergenic |
| AGCTAAAGTAAGAGTAGCTG+AGG | 0.583735 | 5.4:-71798837 | None:intergenic |
| CCCAAGTTTGTCATAGACCA+TGG | 0.588238 | 5.4:-71800585 | None:intergenic |
| CCGCCAAAGTAACATGGTAC+GGG | 0.590022 | 5.4:+71790409 | MS.gene038286:CDS |
| CCTGAGCCAAGCTGTACTGA+AGG | 0.590820 | 5.4:-71795004 | None:intergenic |
| ATGAAACGGAACTCTTCCAC+TGG | 0.590952 | 5.4:-71790078 | None:intergenic |
| GAATTATCGGAAAAGCTCCA+TGG | 0.592292 | 5.4:-71798913 | None:intergenic |
| ATGCCCAGTTAACGTTTCCA+AGG | 0.595544 | 5.4:+71794814 | MS.gene038286:CDS |
| CCGATAATTCTTGGTCATGG+AGG | 0.595973 | 5.4:+71798926 | MS.gene038286:CDS |
| ATTCAATATATACTAACAAG+AGG | 0.598080 | 5.4:-71800689 | None:intergenic |
| TGTTGTTTAGGAATAATTGG+AGG | 0.608292 | 5.4:+71789139 | MS.gene038286:intron |
| AAATTGCTTTATTATGTTTG+GGG | 0.609522 | 5.4:+71792038 | MS.gene038286:CDS |
| GAGATTGATAAGCCAAAACT+GGG | 0.611852 | 5.4:+71788908 | MS.gene038286:CDS |
| AGCGCATTTATGCGAGACAT+AGG | 0.613638 | 5.4:-71796345 | None:intergenic |
| TTTGTAACACATGCAAAAGA+GGG | 0.615678 | 5.4:-71798171 | None:intergenic |
| CAGCTTGGGAGTTATATGGC+AGG | 0.615717 | 5.4:+71795175 | MS.gene038286:CDS |
| TGGATGCGAACAGTAATTTG+GGG | 0.621377 | 5.4:+71789200 | MS.gene038286:CDS |
| AAAGGAACGGAAACTTGACC+TGG | 0.622958 | 5.4:-71788341 | None:intergenic |
| TCGGAAAAGCTCCATGGACA+AGG | 0.623063 | 5.4:-71798907 | None:intergenic |
| TTGGATCAAGCCATGCCACA+CGG | 0.623878 | 5.4:+71798876 | MS.gene038286:CDS |
| TGTTGAGCTACAGATTCGAA+CGG | 0.626645 | 5.4:-71788365 | None:intergenic |
| ATACAGAGCGATACTTTGTG+TGG | 0.626980 | 5.4:-71788296 | None:intergenic |
| TTCATGAGCATGCTTTACAC+GGG | 0.629895 | 5.4:+71797286 | MS.gene038286:CDS |
| TGGATCAAGCCATGCCACAC+GGG | 0.632664 | 5.4:+71798877 | MS.gene038286:CDS |
| CCAGCTTTGGATGCCCAAAG+TGG | 0.638618 | 5.4:-71792072 | None:intergenic |
| TGAAGACCGCCAAAGTAACA+TGG | 0.640921 | 5.4:+71790403 | MS.gene038286:CDS |
| AGAAATTGAAGCAAGAAAGG+AGG | 0.641409 | 5.4:+71790055 | MS.gene038286:CDS |
| TGTTTGGATACTGAATCAGC+AGG | 0.647779 | 5.4:-71790350 | None:intergenic |
| GGAGTTATCGTAAATGCACC+TGG | 0.655237 | 5.4:-71788275 | None:intergenic |
| CAACAATATAGGCCCGTGAG+CGG | 0.657328 | 5.4:-71798958 | None:intergenic |
| GTATTCAGAATACGAGAACA+TGG | 0.657580 | 5.4:+71789998 | MS.gene038286:CDS |
| GAAGCAAGAAAGGAGGCCAG+TGG | 0.662714 | 5.4:+71790062 | MS.gene038286:CDS |
| AGCATTCTACCTGATGGCCA+TGG | 0.666689 | 5.4:+71800568 | MS.gene038286:CDS |
| AGATTCGAACGGAAAAGGAA+CGG | 0.668299 | 5.4:-71788354 | None:intergenic |
| CGCAGCAAAGCAATTCCGAG+AGG | 0.671365 | 5.4:+71797519 | MS.gene038286:CDS |
| TTTGGACCAAATGATAACAA+GGG | 0.679717 | 5.4:-71794770 | None:intergenic |
| GTTGGTTGGGCACAGAACTG+GGG | 0.696775 | 5.4:-71795096 | None:intergenic |
| GACAAGGTTCAGTGCCCGTG+TGG | 0.697635 | 5.4:-71798891 | None:intergenic |
| GGAACGGAAACTTGACCTGG+AGG | 0.699710 | 5.4:-71788338 | None:intergenic |
| GCTGTGATGTTGAAACAACC+AGG | 0.711853 | 5.4:+71788257 | MS.gene038286:CDS |
| GAACTATTATTACCAGCCGG+AGG | 0.715079 | 5.4:-71792004 | None:intergenic |
| TTATCAGAAATCTGGCAATG+CGG | 0.719122 | 5.4:+71798745 | MS.gene038286:intron |
| GTACGGGATATTGATCCCAG+TGG | 0.719445 | 5.4:+71790425 | MS.gene038286:CDS |
| GTTCATCTTAGCTCTCACCA+AGG | 0.742877 | 5.4:+71788403 | MS.gene038286:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.4 | gene | 71788254 | 71800709 | 71788254 | ID=MS.gene038286 |
| chr5.4 | mRNA | 71788254 | 71800709 | 71788254 | ID=MS.gene038286.t1;Parent=MS.gene038286 |
| chr5.4 | exon | 71788254 | 71788424 | 71788254 | ID=MS.gene038286.t1.exon1;Parent=MS.gene038286.t1 |
| chr5.4 | CDS | 71788254 | 71788424 | 71788254 | ID=cds.MS.gene038286.t1;Parent=MS.gene038286.t1 |
| chr5.4 | exon | 71788858 | 71789020 | 71788858 | ID=MS.gene038286.t1.exon2;Parent=MS.gene038286.t1 |
| chr5.4 | CDS | 71788858 | 71789020 | 71788858 | ID=cds.MS.gene038286.t1;Parent=MS.gene038286.t1 |
| chr5.4 | exon | 71789149 | 71789270 | 71789149 | ID=MS.gene038286.t1.exon3;Parent=MS.gene038286.t1 |
| chr5.4 | CDS | 71789149 | 71789270 | 71789149 | ID=cds.MS.gene038286.t1;Parent=MS.gene038286.t1 |
| chr5.4 | exon | 71789888 | 71790137 | 71789888 | ID=MS.gene038286.t1.exon4;Parent=MS.gene038286.t1 |
| chr5.4 | CDS | 71789888 | 71790137 | 71789888 | ID=cds.MS.gene038286.t1;Parent=MS.gene038286.t1 |
| chr5.4 | exon | 71790339 | 71790516 | 71790339 | ID=MS.gene038286.t1.exon5;Parent=MS.gene038286.t1 |
| chr5.4 | CDS | 71790339 | 71790516 | 71790339 | ID=cds.MS.gene038286.t1;Parent=MS.gene038286.t1 |
| chr5.4 | exon | 71790613 | 71790691 | 71790613 | ID=MS.gene038286.t1.exon6;Parent=MS.gene038286.t1 |
| chr5.4 | CDS | 71790613 | 71790691 | 71790613 | ID=cds.MS.gene038286.t1;Parent=MS.gene038286.t1 |
| chr5.4 | exon | 71790789 | 71790874 | 71790789 | ID=MS.gene038286.t1.exon7;Parent=MS.gene038286.t1 |
| chr5.4 | CDS | 71790789 | 71790874 | 71790789 | ID=cds.MS.gene038286.t1;Parent=MS.gene038286.t1 |
| chr5.4 | exon | 71791976 | 71792102 | 71791976 | ID=MS.gene038286.t1.exon8;Parent=MS.gene038286.t1 |
| chr5.4 | CDS | 71791976 | 71792102 | 71791976 | ID=cds.MS.gene038286.t1;Parent=MS.gene038286.t1 |
| chr5.4 | exon | 71792252 | 71792284 | 71792252 | ID=MS.gene038286.t1.exon9;Parent=MS.gene038286.t1 |
| chr5.4 | CDS | 71792252 | 71792284 | 71792252 | ID=cds.MS.gene038286.t1;Parent=MS.gene038286.t1 |
| chr5.4 | exon | 71792524 | 71792772 | 71792524 | ID=MS.gene038286.t1.exon10;Parent=MS.gene038286.t1 |
| chr5.4 | CDS | 71792524 | 71792772 | 71792524 | ID=cds.MS.gene038286.t1;Parent=MS.gene038286.t1 |
| chr5.4 | exon | 71794758 | 71794835 | 71794758 | ID=MS.gene038286.t1.exon11;Parent=MS.gene038286.t1 |
| chr5.4 | CDS | 71794758 | 71794835 | 71794758 | ID=cds.MS.gene038286.t1;Parent=MS.gene038286.t1 |
| chr5.4 | exon | 71794934 | 71795196 | 71794934 | ID=MS.gene038286.t1.exon12;Parent=MS.gene038286.t1 |
| chr5.4 | CDS | 71794934 | 71795196 | 71794934 | ID=cds.MS.gene038286.t1;Parent=MS.gene038286.t1 |
| chr5.4 | exon | 71796341 | 71796400 | 71796341 | ID=MS.gene038286.t1.exon13;Parent=MS.gene038286.t1 |
| chr5.4 | CDS | 71796341 | 71796400 | 71796341 | ID=cds.MS.gene038286.t1;Parent=MS.gene038286.t1 |
| chr5.4 | exon | 71796963 | 71797030 | 71796963 | ID=MS.gene038286.t1.exon14;Parent=MS.gene038286.t1 |
| chr5.4 | CDS | 71796963 | 71797030 | 71796963 | ID=cds.MS.gene038286.t1;Parent=MS.gene038286.t1 |
| chr5.4 | exon | 71797202 | 71797307 | 71797202 | ID=MS.gene038286.t1.exon15;Parent=MS.gene038286.t1 |
| chr5.4 | CDS | 71797202 | 71797307 | 71797202 | ID=cds.MS.gene038286.t1;Parent=MS.gene038286.t1 |
| chr5.4 | exon | 71797399 | 71797540 | 71797399 | ID=MS.gene038286.t1.exon16;Parent=MS.gene038286.t1 |
| chr5.4 | CDS | 71797399 | 71797540 | 71797399 | ID=cds.MS.gene038286.t1;Parent=MS.gene038286.t1 |
| chr5.4 | exon | 71798152 | 71798250 | 71798152 | ID=MS.gene038286.t1.exon17;Parent=MS.gene038286.t1 |
| chr5.4 | CDS | 71798152 | 71798250 | 71798152 | ID=cds.MS.gene038286.t1;Parent=MS.gene038286.t1 |
| chr5.4 | exon | 71798752 | 71799016 | 71798752 | ID=MS.gene038286.t1.exon18;Parent=MS.gene038286.t1 |
| chr5.4 | CDS | 71798752 | 71799016 | 71798752 | ID=cds.MS.gene038286.t1;Parent=MS.gene038286.t1 |
| chr5.4 | exon | 71799488 | 71799555 | 71799488 | ID=MS.gene038286.t1.exon19;Parent=MS.gene038286.t1 |
| chr5.4 | CDS | 71799488 | 71799555 | 71799488 | ID=cds.MS.gene038286.t1;Parent=MS.gene038286.t1 |
| chr5.4 | exon | 71800548 | 71800709 | 71800548 | ID=MS.gene038286.t1.exon20;Parent=MS.gene038286.t1 |
| chr5.4 | CDS | 71800548 | 71800709 | 71800548 | ID=cds.MS.gene038286.t1;Parent=MS.gene038286.t1 |
| Gene Sequence |
| Protein sequence |
