Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene007855.t1 | XP_003628452.2 | 99.6 | 523 | 2 | 0 | 1 | 523 | 17 | 539 | 1.40E-304 | 1054.7 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene007855.t1 | B3DNN5 | 75.0 | 529 | 123 | 5 | 1 | 523 | 17 | 542 | 2.1e-219 | 763.1 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene007855.t1 | D0VFU6 | 99.6 | 523 | 2 | 0 | 1 | 523 | 17 | 539 | 1.0e-304 | 1054.7 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene007855.t1 | MTR_8g058380 | 99.618 | 523 | 2 | 0 | 1 | 523 | 17 | 539 | 0.0 | 1086 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene007855.t1 | AT1G78770 | 77.127 | 529 | 112 | 5 | 1 | 523 | 17 | 542 | 0.0 | 809 |
Find 115 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GAAAACCAATAATGATTTAT+TGG | 0.178881 | 8.1:+53276142 | MS.gene007855:CDS |
| GCAGGCCAATAAATCATTAT+TGG | 0.215518 | 8.1:-53276147 | None:intergenic |
| GAGATCACGGAGGACGATTT+TGG | 0.237710 | 8.1:-53272309 | None:intergenic |
| TGCATATACTTACCACTTAC+AGG | 0.260832 | 8.1:+53280186 | MS.gene007855:CDS |
| TTGATTTCGTCATTGCAATT+TGG | 0.265331 | 8.1:+53275890 | MS.gene007855:CDS |
| TCCTTACTCTTTCATATAAT+AGG | 0.285237 | 8.1:-53278143 | None:intergenic |
| CACTTACCAGCTCTTTATAT+TGG | 0.295284 | 8.1:+53277755 | MS.gene007855:CDS |
| GGTGAAAGTGGCAACTTTAT+CGG | 0.303029 | 8.1:-53272201 | None:intergenic |
| CAGCTATAAGCTTGCTGAAC+AGG | 0.316612 | 8.1:+53277799 | MS.gene007855:CDS |
| ACTGCAGCTCGATTATTTCC+TGG | 0.319914 | 8.1:+53277193 | MS.gene007855:CDS |
| ATCTTTATCCAAGTAGATAT+TGG | 0.322898 | 8.1:-53272447 | None:intergenic |
| GATTCCACTCGTTCAATTCC+TGG | 0.326570 | 8.1:-53272361 | None:intergenic |
| GTACTAATGTGCTCTTGATA+TGG | 0.332010 | 8.1:-53276567 | None:intergenic |
| ATGATAGTATTCAGCTTTGC+AGG | 0.345674 | 8.1:-53276165 | None:intergenic |
| CATAATATGAAATTGCTTCT+CGG | 0.388953 | 8.1:-53280117 | None:intergenic |
| CTGGCAGCTGCTATGGAGCT+TGG | 0.390830 | 8.1:+53276592 | MS.gene007855:CDS |
| CAAGAGCACATTAGTACATC+TGG | 0.399689 | 8.1:+53276573 | MS.gene007855:CDS |
| GTTAAATTTACTTGAAATAA+CGG | 0.399730 | 8.1:-53276884 | None:intergenic |
| CACTTAAAGCGGTAGGGATG+AGG | 0.421874 | 8.1:-53279064 | None:intergenic |
| GGTGGAAGGCGCGGCGGTAA+TGG | 0.429908 | 8.1:-53272274 | None:intergenic |
| ACTTGAAATAACGGCGGGAT+TGG | 0.433856 | 8.1:-53276875 | None:intergenic |
| CGCGGCGGTAATGGCGGCCG+AGG | 0.434092 | 8.1:-53272265 | None:intergenic |
| AATAAATACATTAGAGTTCA+AGG | 0.434201 | 8.1:-53281941 | None:intergenic |
| AATGTGTACCTCATAGCATA+AGG | 0.443763 | 8.1:-53274161 | None:intergenic |
| AGTACATCTGGCAGCTGCTA+TGG | 0.448725 | 8.1:+53276585 | MS.gene007855:CDS |
| TGGCAGCTGCTATGGAGCTT+GGG | 0.450830 | 8.1:+53276593 | MS.gene007855:CDS |
| TCAGTGCAGAACTGATCATC+TGG | 0.451911 | 8.1:-53281867 | None:intergenic |
| TTCCCATAGCCTATCCATGC+AGG | 0.454837 | 8.1:-53277121 | None:intergenic |
| TAATGCCGCCAATATCTACT+TGG | 0.459731 | 8.1:+53272439 | MS.gene007855:CDS |
| TTATTCTTGTTTGATTAAGA+AGG | 0.461366 | 8.1:+53275940 | MS.gene007855:CDS |
| GGCACTGTGCAGCGAGGTAG+CGG | 0.462555 | 8.1:-53272337 | None:intergenic |
| AGCTAAAGAAGAGGGTGATC+AGG | 0.462934 | 8.1:+53277153 | MS.gene007855:CDS |
| CTGCAGCTCGATTATTTCCT+GGG | 0.463353 | 8.1:+53277194 | MS.gene007855:CDS |
| TTCAGTGTGCGGAAGAAAGA+AGG | 0.467284 | 8.1:-53276122 | None:intergenic |
| TGAGCAATATTGACTAAAGT+TGG | 0.467691 | 8.1:-53279098 | None:intergenic |
| AGCTCTAGAAAACCGTTCTC+AGG | 0.482124 | 8.1:+53273889 | MS.gene007855:CDS |
| TGCTCATGCATGCAGAAAGT+TGG | 0.488077 | 8.1:+53279115 | MS.gene007855:CDS |
| TGTTGTTTAGGGCTTCATCA+TGG | 0.488358 | 8.1:+53276811 | MS.gene007855:intron |
| TCTGCACTGAAATGTTAAGC+TGG | 0.488942 | 8.1:+53281880 | MS.gene007855:CDS |
| GTGCAGCGAGGTAGCGGAAG+CGG | 0.493534 | 8.1:-53272331 | None:intergenic |
| CCACTTGTGTATAACGAACT+AGG | 0.501430 | 8.1:+53278112 | MS.gene007855:CDS |
| ACCAGCTCTTTATATTGGAA+TGG | 0.501493 | 8.1:+53277760 | MS.gene007855:CDS |
| TTCAGCAAGCTTATAGCTGT+GGG | 0.502131 | 8.1:-53277795 | None:intergenic |
| GCTTCATCATGGTTTGCTGT+TGG | 0.502404 | 8.1:+53276822 | MS.gene007855:CDS |
| CCTCGCTGCACAGTGCCTCC+AGG | 0.505148 | 8.1:+53272343 | MS.gene007855:CDS |
| CACATGCTTACATGTGATGA+AGG | 0.505528 | 8.1:+53275724 | MS.gene007855:CDS |
| TTTAACCTCCTCACCGAGCA+TGG | 0.511312 | 8.1:-53272393 | None:intergenic |
| ATATTACAGTTTGCTTGAGA+AGG | 0.520023 | 8.1:+53276537 | MS.gene007855:intron |
| CATGTTTCACTTAAAGCGGT+AGG | 0.524123 | 8.1:-53279071 | None:intergenic |
| GTTCTCAAGATCTCTAAACT+TGG | 0.526440 | 8.1:-53276072 | None:intergenic |
| ATCAAATGAACTTTATCTGA+TGG | 0.529595 | 8.1:+53276618 | MS.gene007855:CDS |
| ACAAGTTTGAGCACTTATGC+TGG | 0.530284 | 8.1:+53280160 | MS.gene007855:CDS |
| TGCAGGATCGTTGGTGAAAG+TGG | 0.537119 | 8.1:-53272213 | None:intergenic |
| CCCCTGCATGGATAGGCTAT+GGG | 0.540578 | 8.1:+53277119 | MS.gene007855:CDS |
| GTCATTGCAATTTGGAAGTG+AGG | 0.540735 | 8.1:+53275898 | MS.gene007855:CDS |
| AGCGGATCCCTTATGCTATG+AGG | 0.542168 | 8.1:+53274153 | MS.gene007855:CDS |
| TCCATTCCAATATAAAGAGC+TGG | 0.542867 | 8.1:-53277761 | None:intergenic |
| GTTCAGCAAGCTTATAGCTG+TGG | 0.543435 | 8.1:-53277796 | None:intergenic |
| GGAGGCGTTGAGGAGGTGGA+AGG | 0.544257 | 8.1:-53272288 | None:intergenic |
| CTGCACTGAAATGTTAAGCT+GGG | 0.545603 | 8.1:+53281881 | MS.gene007855:CDS |
| GGAAGGCGCGGCGGTAATGG+CGG | 0.546984 | 8.1:-53272271 | None:intergenic |
| ATGTGTACCTCATAGCATAA+GGG | 0.547549 | 8.1:-53274160 | None:intergenic |
| TTGCAATTTGGAAGTGAGGA+TGG | 0.551069 | 8.1:+53275902 | MS.gene007855:CDS |
| CAATATAAAGAGCTGGTAAG+TGG | 0.552656 | 8.1:-53277754 | None:intergenic |
| CTCCCATGTTTCACTTAAAG+CGG | 0.554446 | 8.1:-53279075 | None:intergenic |
| AATTTACTTGAAATAACGGC+GGG | 0.554608 | 8.1:-53276880 | None:intergenic |
| CTACCGCTTTAAGTGAAACA+TGG | 0.558823 | 8.1:+53279072 | MS.gene007855:CDS |
| CGTTGAGGAGGTGGAAGGCG+CGG | 0.558995 | 8.1:-53272283 | None:intergenic |
| AATCAATGTCTTTCCATGCT+CGG | 0.562083 | 8.1:+53272380 | MS.gene007855:CDS |
| ACTTAAAGCGGTAGGGATGA+GGG | 0.569326 | 8.1:-53279063 | None:intergenic |
| AATACATTAGAGTTCAAGGT+GGG | 0.570088 | 8.1:-53281937 | None:intergenic |
| TCTTTCCATGCTCGGTGAGG+AGG | 0.570350 | 8.1:+53272388 | MS.gene007855:CDS |
| CACGCGCAGTCTCTATTCCT+CGG | 0.572306 | 8.1:+53272248 | MS.gene007855:CDS |
| ATGTTTCACTTAAAGCGGTA+GGG | 0.572738 | 8.1:-53279070 | None:intergenic |
| TTTATCCAAGTAGATATTGG+CGG | 0.573210 | 8.1:-53272444 | None:intergenic |
| TCATTTCAGATACCTGTAAG+TGG | 0.574080 | 8.1:-53280198 | None:intergenic |
| ATAGATGTCTGCAGGATCGT+TGG | 0.575896 | 8.1:-53272222 | None:intergenic |
| TCCCATAGCCTATCCATGCA+GGG | 0.576651 | 8.1:-53277120 | None:intergenic |
| CCTAGTTCGTTATACACAAG+TGG | 0.581962 | 8.1:-53278112 | None:intergenic |
| ACCGTTCTCAGGCTCGATCG+TGG | 0.582145 | 8.1:+53273900 | MS.gene007855:CDS |
| CCAGTATGACAAAGAAATTG+TGG | 0.584615 | 8.1:+53276043 | MS.gene007855:intron |
| GCGTGCATATAGATGTCTGC+AGG | 0.585880 | 8.1:-53272230 | None:intergenic |
| GGTAGCGGAAGCGGAGATCA+CGG | 0.586113 | 8.1:-53272322 | None:intergenic |
| TGCATTTGCAGCTAAAGAAG+AGG | 0.589323 | 8.1:+53277144 | MS.gene007855:CDS |
| GAGGTTAAAGTCGATGAACA+TGG | 0.593022 | 8.1:+53272407 | MS.gene007855:CDS |
| ACCACGATCGAGCCTGAGAA+CGG | 0.595233 | 8.1:-53273901 | None:intergenic |
| GCTGCAATATGTTTCTTGAG+AGG | 0.595651 | 8.1:+53273854 | MS.gene007855:CDS |
| GATGGCATGCAATTTAGTGA+AGG | 0.598718 | 8.1:+53276636 | MS.gene007855:CDS |
| AATGTGCTCTTGATATGGAA+AGG | 0.600025 | 8.1:-53276562 | None:intergenic |
| AATTTGGAAGTGAGGATGGA+TGG | 0.616560 | 8.1:+53275906 | MS.gene007855:CDS |
| GCCTCCAGGAATTGAACGAG+TGG | 0.620608 | 8.1:+53272357 | MS.gene007855:CDS |
| GGAAGAAAGAAGGATTAGAC+TGG | 0.629298 | 8.1:-53276112 | None:intergenic |
| TACCGCTTTAAGTGAAACAT+GGG | 0.632859 | 8.1:+53279073 | MS.gene007855:CDS |
| CCATAGCCTATCCATGCAGG+GGG | 0.632890 | 8.1:-53277118 | None:intergenic |
| CCCATAGCCTATCCATGCAG+GGG | 0.636273 | 8.1:-53277119 | None:intergenic |
| ATCTACTTGGATAAAGATCG+TGG | 0.636532 | 8.1:+53272452 | MS.gene007855:CDS |
| GCATTTGCAGCTAAAGAAGA+GGG | 0.638014 | 8.1:+53277145 | MS.gene007855:CDS |
| GTACAAAGCGGCTATAAAAG+CGG | 0.663295 | 8.1:+53274135 | MS.gene007855:CDS |
| GGTATAAGAAAGCAGTGTGG+TGG | 0.663981 | 8.1:+53279024 | MS.gene007855:intron |
| ATAGATGAAAGTAGAAGCAG+CGG | 0.669594 | 8.1:+53281909 | MS.gene007855:CDS |
| ATGTCTTTCCATGCTCGGTG+AGG | 0.672682 | 8.1:+53272385 | MS.gene007855:CDS |
| TCATTGAAAATCAGGCGTTG+TGG | 0.678575 | 8.1:+53281838 | MS.gene007855:intron |
| AAATTTACTTGAAATAACGG+CGG | 0.680832 | 8.1:-53276881 | None:intergenic |
| TCCACTCGTTCAATTCCTGG+AGG | 0.681004 | 8.1:-53272358 | None:intergenic |
| TGAGGAGGTGGAAGGCGCGG+CGG | 0.684256 | 8.1:-53272280 | None:intergenic |
| ATACATTAGAGTTCAAGGTG+GGG | 0.688678 | 8.1:-53281936 | None:intergenic |
| GCTGAATACTATCATCAGTG+TGG | 0.709549 | 8.1:+53276173 | MS.gene007855:CDS |
| CCTGGAGGCACTGTGCAGCG+AGG | 0.710760 | 8.1:-53272343 | None:intergenic |
| TTTATCGGCGAAGAAGATCG+CGG | 0.717768 | 8.1:-53272186 | None:intergenic |
| AAATACATTAGAGTTCAAGG+TGG | 0.720919 | 8.1:-53281938 | None:intergenic |
| GAAATAATCGAGCTGCAGTG+CGG | 0.737569 | 8.1:-53277189 | None:intergenic |
| ATCGGCGAAGAAGATCGCGG+AGG | 0.749287 | 8.1:-53272183 | None:intergenic |
| CATAGCCTATCCATGCAGGG+GGG | 0.751409 | 8.1:-53277117 | None:intergenic |
| AGCGGAAGCGGAGATCACGG+AGG | 0.767635 | 8.1:-53272319 | None:intergenic |
| TCAGGTATAAGAAAGCAGTG+TGG | 0.802084 | 8.1:+53279021 | MS.gene007855:intron |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.1 | gene | 53272164 | 53281953 | 53272164 | ID=MS.gene007855 |
| chr8.1 | mRNA | 53272164 | 53281953 | 53272164 | ID=MS.gene007855.t1;Parent=MS.gene007855 |
| chr8.1 | exon | 53272164 | 53272484 | 53272164 | ID=MS.gene007855.t1.exon1;Parent=MS.gene007855.t1 |
| chr8.1 | CDS | 53272164 | 53272484 | 53272164 | ID=cds.MS.gene007855.t1;Parent=MS.gene007855.t1 |
| chr8.1 | exon | 53273848 | 53273921 | 53273848 | ID=MS.gene007855.t1.exon2;Parent=MS.gene007855.t1 |
| chr8.1 | CDS | 53273848 | 53273921 | 53273848 | ID=cds.MS.gene007855.t1;Parent=MS.gene007855.t1 |
| chr8.1 | exon | 53274135 | 53274174 | 53274135 | ID=MS.gene007855.t1.exon3;Parent=MS.gene007855.t1 |
| chr8.1 | CDS | 53274135 | 53274174 | 53274135 | ID=cds.MS.gene007855.t1;Parent=MS.gene007855.t1 |
| chr8.1 | exon | 53275700 | 53275745 | 53275700 | ID=MS.gene007855.t1.exon4;Parent=MS.gene007855.t1 |
| chr8.1 | CDS | 53275700 | 53275745 | 53275700 | ID=cds.MS.gene007855.t1;Parent=MS.gene007855.t1 |
| chr8.1 | exon | 53275882 | 53275961 | 53275882 | ID=MS.gene007855.t1.exon5;Parent=MS.gene007855.t1 |
| chr8.1 | CDS | 53275882 | 53275961 | 53275882 | ID=cds.MS.gene007855.t1;Parent=MS.gene007855.t1 |
| chr8.1 | exon | 53276047 | 53276228 | 53276047 | ID=MS.gene007855.t1.exon6;Parent=MS.gene007855.t1 |
| chr8.1 | CDS | 53276047 | 53276228 | 53276047 | ID=cds.MS.gene007855.t1;Parent=MS.gene007855.t1 |
| chr8.1 | exon | 53276546 | 53276671 | 53276546 | ID=MS.gene007855.t1.exon7;Parent=MS.gene007855.t1 |
| chr8.1 | CDS | 53276546 | 53276671 | 53276546 | ID=cds.MS.gene007855.t1;Parent=MS.gene007855.t1 |
| chr8.1 | exon | 53276821 | 53276895 | 53276821 | ID=MS.gene007855.t1.exon8;Parent=MS.gene007855.t1 |
| chr8.1 | CDS | 53276821 | 53276895 | 53276821 | ID=cds.MS.gene007855.t1;Parent=MS.gene007855.t1 |
| chr8.1 | exon | 53277090 | 53277215 | 53277090 | ID=MS.gene007855.t1.exon9;Parent=MS.gene007855.t1 |
| chr8.1 | CDS | 53277090 | 53277215 | 53277090 | ID=cds.MS.gene007855.t1;Parent=MS.gene007855.t1 |
| chr8.1 | exon | 53277751 | 53277820 | 53277751 | ID=MS.gene007855.t1.exon10;Parent=MS.gene007855.t1 |
| chr8.1 | CDS | 53277751 | 53277820 | 53277751 | ID=cds.MS.gene007855.t1;Parent=MS.gene007855.t1 |
| chr8.1 | exon | 53278076 | 53278158 | 53278076 | ID=MS.gene007855.t1.exon11;Parent=MS.gene007855.t1 |
| chr8.1 | CDS | 53278076 | 53278158 | 53278076 | ID=cds.MS.gene007855.t1;Parent=MS.gene007855.t1 |
| chr8.1 | exon | 53279025 | 53279138 | 53279025 | ID=MS.gene007855.t1.exon12;Parent=MS.gene007855.t1 |
| chr8.1 | CDS | 53279025 | 53279138 | 53279025 | ID=cds.MS.gene007855.t1;Parent=MS.gene007855.t1 |
| chr8.1 | exon | 53280111 | 53280207 | 53280111 | ID=MS.gene007855.t1.exon13;Parent=MS.gene007855.t1 |
| chr8.1 | CDS | 53280111 | 53280207 | 53280111 | ID=cds.MS.gene007855.t1;Parent=MS.gene007855.t1 |
| chr8.1 | exon | 53281141 | 53281176 | 53281141 | ID=MS.gene007855.t1.exon14;Parent=MS.gene007855.t1 |
| chr8.1 | CDS | 53281141 | 53281176 | 53281141 | ID=cds.MS.gene007855.t1;Parent=MS.gene007855.t1 |
| chr8.1 | exon | 53281852 | 53281953 | 53281852 | ID=MS.gene007855.t1.exon15;Parent=MS.gene007855.t1 |
| chr8.1 | CDS | 53281852 | 53281953 | 53281852 | ID=cds.MS.gene007855.t1;Parent=MS.gene007855.t1 |
| Gene Sequence |
| Protein sequence |