Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene007855.t1 | XP_003628452.2 | 99.6 | 523 | 2 | 0 | 1 | 523 | 17 | 539 | 1.40E-304 | 1054.7 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene007855.t1 | B3DNN5 | 75.0 | 529 | 123 | 5 | 1 | 523 | 17 | 542 | 2.1e-219 | 763.1 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene007855.t1 | D0VFU6 | 99.6 | 523 | 2 | 0 | 1 | 523 | 17 | 539 | 1.0e-304 | 1054.7 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene007855.t1 | MTR_8g058380 | 99.618 | 523 | 2 | 0 | 1 | 523 | 17 | 539 | 0.0 | 1086 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene007855.t1 | AT1G78770 | 77.127 | 529 | 112 | 5 | 1 | 523 | 17 | 542 | 0.0 | 809 |
Find 115 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
GAAAACCAATAATGATTTAT+TGG | 0.178881 | 8.1:+53276142 | MS.gene007855:CDS |
GCAGGCCAATAAATCATTAT+TGG | 0.215518 | 8.1:-53276147 | None:intergenic |
GAGATCACGGAGGACGATTT+TGG | 0.237710 | 8.1:-53272309 | None:intergenic |
TGCATATACTTACCACTTAC+AGG | 0.260832 | 8.1:+53280186 | MS.gene007855:CDS |
TTGATTTCGTCATTGCAATT+TGG | 0.265331 | 8.1:+53275890 | MS.gene007855:CDS |
TCCTTACTCTTTCATATAAT+AGG | 0.285237 | 8.1:-53278143 | None:intergenic |
CACTTACCAGCTCTTTATAT+TGG | 0.295284 | 8.1:+53277755 | MS.gene007855:CDS |
GGTGAAAGTGGCAACTTTAT+CGG | 0.303029 | 8.1:-53272201 | None:intergenic |
CAGCTATAAGCTTGCTGAAC+AGG | 0.316612 | 8.1:+53277799 | MS.gene007855:CDS |
ACTGCAGCTCGATTATTTCC+TGG | 0.319914 | 8.1:+53277193 | MS.gene007855:CDS |
ATCTTTATCCAAGTAGATAT+TGG | 0.322898 | 8.1:-53272447 | None:intergenic |
GATTCCACTCGTTCAATTCC+TGG | 0.326570 | 8.1:-53272361 | None:intergenic |
GTACTAATGTGCTCTTGATA+TGG | 0.332010 | 8.1:-53276567 | None:intergenic |
ATGATAGTATTCAGCTTTGC+AGG | 0.345674 | 8.1:-53276165 | None:intergenic |
CATAATATGAAATTGCTTCT+CGG | 0.388953 | 8.1:-53280117 | None:intergenic |
CTGGCAGCTGCTATGGAGCT+TGG | 0.390830 | 8.1:+53276592 | MS.gene007855:CDS |
CAAGAGCACATTAGTACATC+TGG | 0.399689 | 8.1:+53276573 | MS.gene007855:CDS |
GTTAAATTTACTTGAAATAA+CGG | 0.399730 | 8.1:-53276884 | None:intergenic |
CACTTAAAGCGGTAGGGATG+AGG | 0.421874 | 8.1:-53279064 | None:intergenic |
GGTGGAAGGCGCGGCGGTAA+TGG | 0.429908 | 8.1:-53272274 | None:intergenic |
ACTTGAAATAACGGCGGGAT+TGG | 0.433856 | 8.1:-53276875 | None:intergenic |
CGCGGCGGTAATGGCGGCCG+AGG | 0.434092 | 8.1:-53272265 | None:intergenic |
AATAAATACATTAGAGTTCA+AGG | 0.434201 | 8.1:-53281941 | None:intergenic |
AATGTGTACCTCATAGCATA+AGG | 0.443763 | 8.1:-53274161 | None:intergenic |
AGTACATCTGGCAGCTGCTA+TGG | 0.448725 | 8.1:+53276585 | MS.gene007855:CDS |
TGGCAGCTGCTATGGAGCTT+GGG | 0.450830 | 8.1:+53276593 | MS.gene007855:CDS |
TCAGTGCAGAACTGATCATC+TGG | 0.451911 | 8.1:-53281867 | None:intergenic |
TTCCCATAGCCTATCCATGC+AGG | 0.454837 | 8.1:-53277121 | None:intergenic |
TAATGCCGCCAATATCTACT+TGG | 0.459731 | 8.1:+53272439 | MS.gene007855:CDS |
TTATTCTTGTTTGATTAAGA+AGG | 0.461366 | 8.1:+53275940 | MS.gene007855:CDS |
GGCACTGTGCAGCGAGGTAG+CGG | 0.462555 | 8.1:-53272337 | None:intergenic |
AGCTAAAGAAGAGGGTGATC+AGG | 0.462934 | 8.1:+53277153 | MS.gene007855:CDS |
CTGCAGCTCGATTATTTCCT+GGG | 0.463353 | 8.1:+53277194 | MS.gene007855:CDS |
TTCAGTGTGCGGAAGAAAGA+AGG | 0.467284 | 8.1:-53276122 | None:intergenic |
TGAGCAATATTGACTAAAGT+TGG | 0.467691 | 8.1:-53279098 | None:intergenic |
AGCTCTAGAAAACCGTTCTC+AGG | 0.482124 | 8.1:+53273889 | MS.gene007855:CDS |
TGCTCATGCATGCAGAAAGT+TGG | 0.488077 | 8.1:+53279115 | MS.gene007855:CDS |
TGTTGTTTAGGGCTTCATCA+TGG | 0.488358 | 8.1:+53276811 | MS.gene007855:intron |
TCTGCACTGAAATGTTAAGC+TGG | 0.488942 | 8.1:+53281880 | MS.gene007855:CDS |
GTGCAGCGAGGTAGCGGAAG+CGG | 0.493534 | 8.1:-53272331 | None:intergenic |
CCACTTGTGTATAACGAACT+AGG | 0.501430 | 8.1:+53278112 | MS.gene007855:CDS |
ACCAGCTCTTTATATTGGAA+TGG | 0.501493 | 8.1:+53277760 | MS.gene007855:CDS |
TTCAGCAAGCTTATAGCTGT+GGG | 0.502131 | 8.1:-53277795 | None:intergenic |
GCTTCATCATGGTTTGCTGT+TGG | 0.502404 | 8.1:+53276822 | MS.gene007855:CDS |
CCTCGCTGCACAGTGCCTCC+AGG | 0.505148 | 8.1:+53272343 | MS.gene007855:CDS |
CACATGCTTACATGTGATGA+AGG | 0.505528 | 8.1:+53275724 | MS.gene007855:CDS |
TTTAACCTCCTCACCGAGCA+TGG | 0.511312 | 8.1:-53272393 | None:intergenic |
ATATTACAGTTTGCTTGAGA+AGG | 0.520023 | 8.1:+53276537 | MS.gene007855:intron |
CATGTTTCACTTAAAGCGGT+AGG | 0.524123 | 8.1:-53279071 | None:intergenic |
GTTCTCAAGATCTCTAAACT+TGG | 0.526440 | 8.1:-53276072 | None:intergenic |
ATCAAATGAACTTTATCTGA+TGG | 0.529595 | 8.1:+53276618 | MS.gene007855:CDS |
ACAAGTTTGAGCACTTATGC+TGG | 0.530284 | 8.1:+53280160 | MS.gene007855:CDS |
TGCAGGATCGTTGGTGAAAG+TGG | 0.537119 | 8.1:-53272213 | None:intergenic |
CCCCTGCATGGATAGGCTAT+GGG | 0.540578 | 8.1:+53277119 | MS.gene007855:CDS |
GTCATTGCAATTTGGAAGTG+AGG | 0.540735 | 8.1:+53275898 | MS.gene007855:CDS |
AGCGGATCCCTTATGCTATG+AGG | 0.542168 | 8.1:+53274153 | MS.gene007855:CDS |
TCCATTCCAATATAAAGAGC+TGG | 0.542867 | 8.1:-53277761 | None:intergenic |
GTTCAGCAAGCTTATAGCTG+TGG | 0.543435 | 8.1:-53277796 | None:intergenic |
GGAGGCGTTGAGGAGGTGGA+AGG | 0.544257 | 8.1:-53272288 | None:intergenic |
CTGCACTGAAATGTTAAGCT+GGG | 0.545603 | 8.1:+53281881 | MS.gene007855:CDS |
GGAAGGCGCGGCGGTAATGG+CGG | 0.546984 | 8.1:-53272271 | None:intergenic |
ATGTGTACCTCATAGCATAA+GGG | 0.547549 | 8.1:-53274160 | None:intergenic |
TTGCAATTTGGAAGTGAGGA+TGG | 0.551069 | 8.1:+53275902 | MS.gene007855:CDS |
CAATATAAAGAGCTGGTAAG+TGG | 0.552656 | 8.1:-53277754 | None:intergenic |
CTCCCATGTTTCACTTAAAG+CGG | 0.554446 | 8.1:-53279075 | None:intergenic |
AATTTACTTGAAATAACGGC+GGG | 0.554608 | 8.1:-53276880 | None:intergenic |
CTACCGCTTTAAGTGAAACA+TGG | 0.558823 | 8.1:+53279072 | MS.gene007855:CDS |
CGTTGAGGAGGTGGAAGGCG+CGG | 0.558995 | 8.1:-53272283 | None:intergenic |
AATCAATGTCTTTCCATGCT+CGG | 0.562083 | 8.1:+53272380 | MS.gene007855:CDS |
ACTTAAAGCGGTAGGGATGA+GGG | 0.569326 | 8.1:-53279063 | None:intergenic |
AATACATTAGAGTTCAAGGT+GGG | 0.570088 | 8.1:-53281937 | None:intergenic |
TCTTTCCATGCTCGGTGAGG+AGG | 0.570350 | 8.1:+53272388 | MS.gene007855:CDS |
CACGCGCAGTCTCTATTCCT+CGG | 0.572306 | 8.1:+53272248 | MS.gene007855:CDS |
ATGTTTCACTTAAAGCGGTA+GGG | 0.572738 | 8.1:-53279070 | None:intergenic |
TTTATCCAAGTAGATATTGG+CGG | 0.573210 | 8.1:-53272444 | None:intergenic |
TCATTTCAGATACCTGTAAG+TGG | 0.574080 | 8.1:-53280198 | None:intergenic |
ATAGATGTCTGCAGGATCGT+TGG | 0.575896 | 8.1:-53272222 | None:intergenic |
TCCCATAGCCTATCCATGCA+GGG | 0.576651 | 8.1:-53277120 | None:intergenic |
CCTAGTTCGTTATACACAAG+TGG | 0.581962 | 8.1:-53278112 | None:intergenic |
ACCGTTCTCAGGCTCGATCG+TGG | 0.582145 | 8.1:+53273900 | MS.gene007855:CDS |
CCAGTATGACAAAGAAATTG+TGG | 0.584615 | 8.1:+53276043 | MS.gene007855:intron |
GCGTGCATATAGATGTCTGC+AGG | 0.585880 | 8.1:-53272230 | None:intergenic |
GGTAGCGGAAGCGGAGATCA+CGG | 0.586113 | 8.1:-53272322 | None:intergenic |
TGCATTTGCAGCTAAAGAAG+AGG | 0.589323 | 8.1:+53277144 | MS.gene007855:CDS |
GAGGTTAAAGTCGATGAACA+TGG | 0.593022 | 8.1:+53272407 | MS.gene007855:CDS |
ACCACGATCGAGCCTGAGAA+CGG | 0.595233 | 8.1:-53273901 | None:intergenic |
GCTGCAATATGTTTCTTGAG+AGG | 0.595651 | 8.1:+53273854 | MS.gene007855:CDS |
GATGGCATGCAATTTAGTGA+AGG | 0.598718 | 8.1:+53276636 | MS.gene007855:CDS |
AATGTGCTCTTGATATGGAA+AGG | 0.600025 | 8.1:-53276562 | None:intergenic |
AATTTGGAAGTGAGGATGGA+TGG | 0.616560 | 8.1:+53275906 | MS.gene007855:CDS |
GCCTCCAGGAATTGAACGAG+TGG | 0.620608 | 8.1:+53272357 | MS.gene007855:CDS |
GGAAGAAAGAAGGATTAGAC+TGG | 0.629298 | 8.1:-53276112 | None:intergenic |
TACCGCTTTAAGTGAAACAT+GGG | 0.632859 | 8.1:+53279073 | MS.gene007855:CDS |
CCATAGCCTATCCATGCAGG+GGG | 0.632890 | 8.1:-53277118 | None:intergenic |
CCCATAGCCTATCCATGCAG+GGG | 0.636273 | 8.1:-53277119 | None:intergenic |
ATCTACTTGGATAAAGATCG+TGG | 0.636532 | 8.1:+53272452 | MS.gene007855:CDS |
GCATTTGCAGCTAAAGAAGA+GGG | 0.638014 | 8.1:+53277145 | MS.gene007855:CDS |
GTACAAAGCGGCTATAAAAG+CGG | 0.663295 | 8.1:+53274135 | MS.gene007855:CDS |
GGTATAAGAAAGCAGTGTGG+TGG | 0.663981 | 8.1:+53279024 | MS.gene007855:intron |
ATAGATGAAAGTAGAAGCAG+CGG | 0.669594 | 8.1:+53281909 | MS.gene007855:CDS |
ATGTCTTTCCATGCTCGGTG+AGG | 0.672682 | 8.1:+53272385 | MS.gene007855:CDS |
TCATTGAAAATCAGGCGTTG+TGG | 0.678575 | 8.1:+53281838 | MS.gene007855:intron |
AAATTTACTTGAAATAACGG+CGG | 0.680832 | 8.1:-53276881 | None:intergenic |
TCCACTCGTTCAATTCCTGG+AGG | 0.681004 | 8.1:-53272358 | None:intergenic |
TGAGGAGGTGGAAGGCGCGG+CGG | 0.684256 | 8.1:-53272280 | None:intergenic |
ATACATTAGAGTTCAAGGTG+GGG | 0.688678 | 8.1:-53281936 | None:intergenic |
GCTGAATACTATCATCAGTG+TGG | 0.709549 | 8.1:+53276173 | MS.gene007855:CDS |
CCTGGAGGCACTGTGCAGCG+AGG | 0.710760 | 8.1:-53272343 | None:intergenic |
TTTATCGGCGAAGAAGATCG+CGG | 0.717768 | 8.1:-53272186 | None:intergenic |
AAATACATTAGAGTTCAAGG+TGG | 0.720919 | 8.1:-53281938 | None:intergenic |
GAAATAATCGAGCTGCAGTG+CGG | 0.737569 | 8.1:-53277189 | None:intergenic |
ATCGGCGAAGAAGATCGCGG+AGG | 0.749287 | 8.1:-53272183 | None:intergenic |
CATAGCCTATCCATGCAGGG+GGG | 0.751409 | 8.1:-53277117 | None:intergenic |
AGCGGAAGCGGAGATCACGG+AGG | 0.767635 | 8.1:-53272319 | None:intergenic |
TCAGGTATAAGAAAGCAGTG+TGG | 0.802084 | 8.1:+53279021 | MS.gene007855:intron |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr8.1 | gene | 53272164 | 53281953 | 53272164 | ID=MS.gene007855 |
chr8.1 | mRNA | 53272164 | 53281953 | 53272164 | ID=MS.gene007855.t1;Parent=MS.gene007855 |
chr8.1 | exon | 53272164 | 53272484 | 53272164 | ID=MS.gene007855.t1.exon1;Parent=MS.gene007855.t1 |
chr8.1 | CDS | 53272164 | 53272484 | 53272164 | ID=cds.MS.gene007855.t1;Parent=MS.gene007855.t1 |
chr8.1 | exon | 53273848 | 53273921 | 53273848 | ID=MS.gene007855.t1.exon2;Parent=MS.gene007855.t1 |
chr8.1 | CDS | 53273848 | 53273921 | 53273848 | ID=cds.MS.gene007855.t1;Parent=MS.gene007855.t1 |
chr8.1 | exon | 53274135 | 53274174 | 53274135 | ID=MS.gene007855.t1.exon3;Parent=MS.gene007855.t1 |
chr8.1 | CDS | 53274135 | 53274174 | 53274135 | ID=cds.MS.gene007855.t1;Parent=MS.gene007855.t1 |
chr8.1 | exon | 53275700 | 53275745 | 53275700 | ID=MS.gene007855.t1.exon4;Parent=MS.gene007855.t1 |
chr8.1 | CDS | 53275700 | 53275745 | 53275700 | ID=cds.MS.gene007855.t1;Parent=MS.gene007855.t1 |
chr8.1 | exon | 53275882 | 53275961 | 53275882 | ID=MS.gene007855.t1.exon5;Parent=MS.gene007855.t1 |
chr8.1 | CDS | 53275882 | 53275961 | 53275882 | ID=cds.MS.gene007855.t1;Parent=MS.gene007855.t1 |
chr8.1 | exon | 53276047 | 53276228 | 53276047 | ID=MS.gene007855.t1.exon6;Parent=MS.gene007855.t1 |
chr8.1 | CDS | 53276047 | 53276228 | 53276047 | ID=cds.MS.gene007855.t1;Parent=MS.gene007855.t1 |
chr8.1 | exon | 53276546 | 53276671 | 53276546 | ID=MS.gene007855.t1.exon7;Parent=MS.gene007855.t1 |
chr8.1 | CDS | 53276546 | 53276671 | 53276546 | ID=cds.MS.gene007855.t1;Parent=MS.gene007855.t1 |
chr8.1 | exon | 53276821 | 53276895 | 53276821 | ID=MS.gene007855.t1.exon8;Parent=MS.gene007855.t1 |
chr8.1 | CDS | 53276821 | 53276895 | 53276821 | ID=cds.MS.gene007855.t1;Parent=MS.gene007855.t1 |
chr8.1 | exon | 53277090 | 53277215 | 53277090 | ID=MS.gene007855.t1.exon9;Parent=MS.gene007855.t1 |
chr8.1 | CDS | 53277090 | 53277215 | 53277090 | ID=cds.MS.gene007855.t1;Parent=MS.gene007855.t1 |
chr8.1 | exon | 53277751 | 53277820 | 53277751 | ID=MS.gene007855.t1.exon10;Parent=MS.gene007855.t1 |
chr8.1 | CDS | 53277751 | 53277820 | 53277751 | ID=cds.MS.gene007855.t1;Parent=MS.gene007855.t1 |
chr8.1 | exon | 53278076 | 53278158 | 53278076 | ID=MS.gene007855.t1.exon11;Parent=MS.gene007855.t1 |
chr8.1 | CDS | 53278076 | 53278158 | 53278076 | ID=cds.MS.gene007855.t1;Parent=MS.gene007855.t1 |
chr8.1 | exon | 53279025 | 53279138 | 53279025 | ID=MS.gene007855.t1.exon12;Parent=MS.gene007855.t1 |
chr8.1 | CDS | 53279025 | 53279138 | 53279025 | ID=cds.MS.gene007855.t1;Parent=MS.gene007855.t1 |
chr8.1 | exon | 53280111 | 53280207 | 53280111 | ID=MS.gene007855.t1.exon13;Parent=MS.gene007855.t1 |
chr8.1 | CDS | 53280111 | 53280207 | 53280111 | ID=cds.MS.gene007855.t1;Parent=MS.gene007855.t1 |
chr8.1 | exon | 53281141 | 53281176 | 53281141 | ID=MS.gene007855.t1.exon14;Parent=MS.gene007855.t1 |
chr8.1 | CDS | 53281141 | 53281176 | 53281141 | ID=cds.MS.gene007855.t1;Parent=MS.gene007855.t1 |
chr8.1 | exon | 53281852 | 53281953 | 53281852 | ID=MS.gene007855.t1.exon15;Parent=MS.gene007855.t1 |
chr8.1 | CDS | 53281852 | 53281953 | 53281852 | ID=cds.MS.gene007855.t1;Parent=MS.gene007855.t1 |
Gene Sequence |
Protein sequence |