Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene032323.t1 | XP_003628452.2 | 99.4 | 523 | 3 | 0 | 1 | 523 | 17 | 539 | 9.30E-304 | 1052 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene032323.t1 | B3DNN5 | 75.0 | 529 | 123 | 5 | 1 | 523 | 17 | 542 | 1.2e-219 | 763.8 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene032323.t1 | D0VFU6 | 99.4 | 523 | 3 | 0 | 1 | 523 | 17 | 539 | 6.7e-304 | 1052.0 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene032323.t1 | MTR_8g058380 | 99.426 | 523 | 3 | 0 | 1 | 523 | 17 | 539 | 0.0 | 1081 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene032323.t1 | AT1G78770 | 77.127 | 529 | 112 | 5 | 1 | 523 | 17 | 542 | 0.0 | 808 |
Find 118 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GAAAACCAATAATGATTTAT+TGG | 0.178881 | 8.2:+48237816 | MS.gene032323:CDS |
| GCAGGCCAATAAATCATTAT+TGG | 0.215518 | 8.2:-48237821 | None:intergenic |
| TGCATATACTTACCACTTAC+AGG | 0.260832 | 8.2:+48241825 | MS.gene032323:CDS |
| TTGATTTCGTCATTGCAATT+TGG | 0.265331 | 8.2:+48237564 | MS.gene032323:CDS |
| TCCTTACTCTTTCATATAAT+AGG | 0.285237 | 8.2:-48239635 | None:intergenic |
| CACTTACCAGCTCTTTATAT+TGG | 0.295284 | 8.2:+48239247 | MS.gene032323:CDS |
| AGTGAAAGTGGCAACTTTAT+CGG | 0.305469 | 8.2:-48233900 | None:intergenic |
| CAGCTATAAGCTTGCTGAAC+AGG | 0.316612 | 8.2:+48239291 | MS.gene032323:CDS |
| ACTGCAGCTCGATTATTTCC+TGG | 0.319914 | 8.2:+48238685 | MS.gene032323:CDS |
| ATCTTTATCCAAGTAGATAT+TGG | 0.322898 | 8.2:-48234146 | None:intergenic |
| GATTCCACTCGTTCAATTCC+TGG | 0.326570 | 8.2:-48234060 | None:intergenic |
| GTACTAATGTGCTCTTGATA+TGG | 0.332010 | 8.2:-48238059 | None:intergenic |
| ATGATAGTATTCAGCTTTGC+AGG | 0.345674 | 8.2:-48237839 | None:intergenic |
| GAGGTCACGGAGGACGATTT+TGG | 0.378773 | 8.2:-48234008 | None:intergenic |
| CATAATATGAAATTGCTTCT+CGG | 0.388953 | 8.2:-48241756 | None:intergenic |
| CTGGCAGCTGCTATGGAGCT+TGG | 0.390830 | 8.2:+48238084 | MS.gene032323:CDS |
| CAAGAGCACATTAGTACATC+TGG | 0.399689 | 8.2:+48238065 | MS.gene032323:CDS |
| GTTAAATTTACTTGAAATAA+CGG | 0.399730 | 8.2:-48238376 | None:intergenic |
| CACTTAAAGCGGTAGGGATG+AGG | 0.421874 | 8.2:-48240708 | None:intergenic |
| GGTGGAAGGCGCGGCGGTAA+TGG | 0.429908 | 8.2:-48233973 | None:intergenic |
| ACTTGAAATAACGGCGGGAT+TGG | 0.433856 | 8.2:-48238367 | None:intergenic |
| CGCGGCGGTAATGGCGGCCG+AGG | 0.434092 | 8.2:-48233964 | None:intergenic |
| AATAAATACATTAGAGTTCA+AGG | 0.434201 | 8.2:-48243580 | None:intergenic |
| AATGTGTACCTCATAGCATA+AGG | 0.443763 | 8.2:-48235883 | None:intergenic |
| AGTACATCTGGCAGCTGCTA+TGG | 0.448725 | 8.2:+48238077 | MS.gene032323:CDS |
| TGGCAGCTGCTATGGAGCTT+GGG | 0.450830 | 8.2:+48238085 | MS.gene032323:CDS |
| TTCAGTGTGCAGAAGAAAGA+AGG | 0.450980 | 8.2:-48237796 | None:intergenic |
| TCAGTGCAGAACTGATCATC+TGG | 0.451911 | 8.2:-48243506 | None:intergenic |
| TTCCCATAGCCTATCCATGC+AGG | 0.454837 | 8.2:-48238613 | None:intergenic |
| TAATGCCGCCAATATCTACT+TGG | 0.459731 | 8.2:+48234138 | MS.gene032323:CDS |
| TTATTCTTGTTTGATTAAGA+AGG | 0.461366 | 8.2:+48237614 | MS.gene032323:CDS |
| AGCTAAAGAAGAGGGTGATC+AGG | 0.462934 | 8.2:+48238645 | MS.gene032323:CDS |
| CTGCAGCTCGATTATTTCCT+GGG | 0.463353 | 8.2:+48238686 | MS.gene032323:CDS |
| TGAGCAATATTGACTAAAGT+TGG | 0.467691 | 8.2:-48240742 | None:intergenic |
| GGCACTGTGCGGCGAGGTAG+CGG | 0.468158 | 8.2:-48234036 | None:intergenic |
| AGCTCTAGAAAACCGTTCTC+AGG | 0.482124 | 8.2:+48235612 | MS.gene032323:CDS |
| TGCTCATGCATGCAGAAAGT+TGG | 0.488077 | 8.2:+48240759 | MS.gene032323:CDS |
| TGTTGTTTAGGGCTTCATCA+TGG | 0.488358 | 8.2:+48238303 | MS.gene032323:intron |
| TCTGCACTGAAATGTTAAGC+TGG | 0.488942 | 8.2:+48243519 | MS.gene032323:CDS |
| CCTCGCCGCACAGTGCCTCC+AGG | 0.489249 | 8.2:+48234042 | MS.gene032323:CDS |
| TGCAGGGTCGTTAGTGAAAG+TGG | 0.496912 | 8.2:-48233912 | None:intergenic |
| CCACTTGTGTATAACGAACT+AGG | 0.501430 | 8.2:+48239604 | MS.gene032323:CDS |
| ACCAGCTCTTTATATTGGAA+TGG | 0.501493 | 8.2:+48239252 | MS.gene032323:CDS |
| TTCAGCAAGCTTATAGCTGT+GGG | 0.502131 | 8.2:-48239287 | None:intergenic |
| GCTTCATCATGGTTTGCTGT+TGG | 0.502404 | 8.2:+48238314 | MS.gene032323:CDS |
| GTGCGGCGAGGTAGCGGAAG+CGG | 0.503503 | 8.2:-48234030 | None:intergenic |
| CACATGCTTACATGTGATGA+AGG | 0.505528 | 8.2:+48237396 | MS.gene032323:CDS |
| TTTAACCTCCTCACCGAGCA+TGG | 0.511312 | 8.2:-48234092 | None:intergenic |
| ATATTACAGTTTGCTTGAGA+AGG | 0.520023 | 8.2:+48238029 | MS.gene032323:intron |
| CATGTTTCACTTAAAGCGGT+AGG | 0.524123 | 8.2:-48240715 | None:intergenic |
| GTTCTCAAGATCTCTAAACT+TGG | 0.526440 | 8.2:-48237746 | None:intergenic |
| ATCAAATGAACTTTATCTGA+TGG | 0.529595 | 8.2:+48238110 | MS.gene032323:CDS |
| ACAAGTTTGAGCACTTATGC+TGG | 0.530284 | 8.2:+48241799 | MS.gene032323:CDS |
| AGAAGATCGCGGAGGAGTAG+AGG | 0.538294 | 8.2:-48233874 | None:intergenic |
| CCCCTGCATGGATAGGCTAT+GGG | 0.540578 | 8.2:+48238611 | MS.gene032323:CDS |
| GTCATTGCAATTTGGAAGTG+AGG | 0.540735 | 8.2:+48237572 | MS.gene032323:CDS |
| AGCGGATCCCTTATGCTATG+AGG | 0.542168 | 8.2:+48235875 | MS.gene032323:CDS |
| TCCATTCCAATATAAAGAGC+TGG | 0.542867 | 8.2:-48239253 | None:intergenic |
| GTTCAGCAAGCTTATAGCTG+TGG | 0.543435 | 8.2:-48239288 | None:intergenic |
| GGAGGCGTTGAGGAGGTGGA+AGG | 0.544257 | 8.2:-48233987 | None:intergenic |
| GCGTGCATATAGATATCTGC+AGG | 0.544834 | 8.2:-48233929 | None:intergenic |
| CTGCACTGAAATGTTAAGCT+GGG | 0.545603 | 8.2:+48243520 | MS.gene032323:CDS |
| GGAAGGCGCGGCGGTAATGG+CGG | 0.546984 | 8.2:-48233970 | None:intergenic |
| ATGTGTACCTCATAGCATAA+GGG | 0.547549 | 8.2:-48235882 | None:intergenic |
| TTGCAATTTGGAAGTGAGGA+TGG | 0.551069 | 8.2:+48237576 | MS.gene032323:CDS |
| CAATATAAAGAGCTGGTAAG+TGG | 0.552656 | 8.2:-48239246 | None:intergenic |
| CTCCCATGTTTCACTTAAAG+CGG | 0.554446 | 8.2:-48240719 | None:intergenic |
| AATTTACTTGAAATAACGGC+GGG | 0.554608 | 8.2:-48238372 | None:intergenic |
| CTACCGCTTTAAGTGAAACA+TGG | 0.558823 | 8.2:+48240716 | MS.gene032323:CDS |
| CGTTGAGGAGGTGGAAGGCG+CGG | 0.558995 | 8.2:-48233982 | None:intergenic |
| AATCAATGTCTTTCCATGCT+CGG | 0.562083 | 8.2:+48234079 | MS.gene032323:CDS |
| ACTTAAAGCGGTAGGGATGA+GGG | 0.569326 | 8.2:-48240707 | None:intergenic |
| AATACATTAGAGTTCAAGGT+GGG | 0.570088 | 8.2:-48243576 | None:intergenic |
| TCTTTCCATGCTCGGTGAGG+AGG | 0.570350 | 8.2:+48234087 | MS.gene032323:CDS |
| GGTAGCGGAAGCGGAGGTCA+CGG | 0.570641 | 8.2:-48234021 | None:intergenic |
| ATGTTTCACTTAAAGCGGTA+GGG | 0.572738 | 8.2:-48240714 | None:intergenic |
| TTTATCCAAGTAGATATTGG+CGG | 0.573210 | 8.2:-48234143 | None:intergenic |
| TCATTTCAGATACCTGTAAG+TGG | 0.574080 | 8.2:-48241837 | None:intergenic |
| TCCCATAGCCTATCCATGCA+GGG | 0.576651 | 8.2:-48238612 | None:intergenic |
| CCTAGTTCGTTATACACAAG+TGG | 0.581962 | 8.2:-48239604 | None:intergenic |
| ACCGTTCTCAGGCTCGATCG+TGG | 0.582145 | 8.2:+48235623 | MS.gene032323:CDS |
| CCAGTATGACAAAGAAATTG+TGG | 0.584615 | 8.2:+48237717 | MS.gene032323:intron |
| TGCATTTGCAGCTAAAGAAG+AGG | 0.589323 | 8.2:+48238636 | MS.gene032323:CDS |
| ACCACGATCGAGCCTGAGAA+CGG | 0.595233 | 8.2:-48235624 | None:intergenic |
| GCTGCAATATGTTTCTTGAG+AGG | 0.595651 | 8.2:+48235577 | MS.gene032323:CDS |
| GATGGCATGCAATTTAGTGA+AGG | 0.598718 | 8.2:+48238128 | MS.gene032323:CDS |
| AATGTGCTCTTGATATGGAA+AGG | 0.600025 | 8.2:-48238054 | None:intergenic |
| CACGCACAGTCTCTATTCCT+CGG | 0.603758 | 8.2:+48233947 | MS.gene032323:CDS |
| AGAAGAAAGAAGGATTAGAC+TGG | 0.603889 | 8.2:-48237786 | None:intergenic |
| GAGGTTAAAGTTGATGAACA+TGG | 0.612701 | 8.2:+48234106 | MS.gene032323:CDS |
| AATTTGGAAGTGAGGATGGA+TGG | 0.616560 | 8.2:+48237580 | MS.gene032323:CDS |
| GCCTCCAGGAATTGAACGAG+TGG | 0.620608 | 8.2:+48234056 | MS.gene032323:CDS |
| CGGCGAGGTAGCGGAAGCGG+AGG | 0.628006 | 8.2:-48234027 | None:intergenic |
| TACCGCTTTAAGTGAAACAT+GGG | 0.632859 | 8.2:+48240717 | MS.gene032323:CDS |
| CCATAGCCTATCCATGCAGG+GGG | 0.632890 | 8.2:-48238610 | None:intergenic |
| CCCATAGCCTATCCATGCAG+GGG | 0.636273 | 8.2:-48238611 | None:intergenic |
| ATCTACTTGGATAAAGATCG+TGG | 0.636532 | 8.2:+48234151 | MS.gene032323:CDS |
| GCATTTGCAGCTAAAGAAGA+GGG | 0.638014 | 8.2:+48238637 | MS.gene032323:CDS |
| GTACAAAGCGGCTATAAAAG+CGG | 0.663295 | 8.2:+48235857 | MS.gene032323:CDS |
| CAATTCCTGGAGGCACTGTG+CGG | 0.663746 | 8.2:-48234047 | None:intergenic |
| GGTATAAGAAAGCAGTGTGG+TGG | 0.663981 | 8.2:+48240668 | MS.gene032323:intron |
| CCTGGAGGCACTGTGCGGCG+AGG | 0.666034 | 8.2:-48234042 | None:intergenic |
| ATAGATGAAAGTAGAAGCAG+CGG | 0.669594 | 8.2:+48243548 | MS.gene032323:CDS |
| ATGTCTTTCCATGCTCGGTG+AGG | 0.672682 | 8.2:+48234084 | MS.gene032323:CDS |
| TCATTGAAAATCAGGCGTTG+TGG | 0.678575 | 8.2:+48243477 | MS.gene032323:intron |
| AAATTTACTTGAAATAACGG+CGG | 0.680832 | 8.2:-48238373 | None:intergenic |
| TCCACTCGTTCAATTCCTGG+AGG | 0.681004 | 8.2:-48234057 | None:intergenic |
| TGAGGAGGTGGAAGGCGCGG+CGG | 0.684256 | 8.2:-48233979 | None:intergenic |
| ATACATTAGAGTTCAAGGTG+GGG | 0.688678 | 8.2:-48243575 | None:intergenic |
| CGTGCATATAGATATCTGCA+GGG | 0.695996 | 8.2:-48233928 | None:intergenic |
| GCTGAATACTATCATCAGTG+TGG | 0.709549 | 8.2:+48237847 | MS.gene032323:CDS |
| TTTATCGGCGAAGAAGATCG+CGG | 0.717768 | 8.2:-48233885 | None:intergenic |
| AGCGGAAGCGGAGGTCACGG+AGG | 0.720457 | 8.2:-48234018 | None:intergenic |
| AAATACATTAGAGTTCAAGG+TGG | 0.720919 | 8.2:-48243577 | None:intergenic |
| GAAATAATCGAGCTGCAGTG+CGG | 0.737569 | 8.2:-48238681 | None:intergenic |
| ATCGGCGAAGAAGATCGCGG+AGG | 0.749287 | 8.2:-48233882 | None:intergenic |
| CATAGCCTATCCATGCAGGG+GGG | 0.751409 | 8.2:-48238609 | None:intergenic |
| TCAGGTATAAGAAAGCAGTG+TGG | 0.802084 | 8.2:+48240665 | MS.gene032323:intron |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.2 | gene | 48233863 | 48243592 | 48233863 | ID=MS.gene032323 |
| chr8.2 | mRNA | 48233863 | 48243592 | 48233863 | ID=MS.gene032323.t1;Parent=MS.gene032323 |
| chr8.2 | exon | 48233863 | 48234183 | 48233863 | ID=MS.gene032323.t1.exon1;Parent=MS.gene032323.t1 |
| chr8.2 | CDS | 48233863 | 48234183 | 48233863 | ID=cds.MS.gene032323.t1;Parent=MS.gene032323.t1 |
| chr8.2 | exon | 48235571 | 48235644 | 48235571 | ID=MS.gene032323.t1.exon2;Parent=MS.gene032323.t1 |
| chr8.2 | CDS | 48235571 | 48235644 | 48235571 | ID=cds.MS.gene032323.t1;Parent=MS.gene032323.t1 |
| chr8.2 | exon | 48235857 | 48235896 | 48235857 | ID=MS.gene032323.t1.exon3;Parent=MS.gene032323.t1 |
| chr8.2 | CDS | 48235857 | 48235896 | 48235857 | ID=cds.MS.gene032323.t1;Parent=MS.gene032323.t1 |
| chr8.2 | exon | 48237372 | 48237417 | 48237372 | ID=MS.gene032323.t1.exon4;Parent=MS.gene032323.t1 |
| chr8.2 | CDS | 48237372 | 48237417 | 48237372 | ID=cds.MS.gene032323.t1;Parent=MS.gene032323.t1 |
| chr8.2 | exon | 48237556 | 48237635 | 48237556 | ID=MS.gene032323.t1.exon5;Parent=MS.gene032323.t1 |
| chr8.2 | CDS | 48237556 | 48237635 | 48237556 | ID=cds.MS.gene032323.t1;Parent=MS.gene032323.t1 |
| chr8.2 | exon | 48237721 | 48237902 | 48237721 | ID=MS.gene032323.t1.exon6;Parent=MS.gene032323.t1 |
| chr8.2 | CDS | 48237721 | 48237902 | 48237721 | ID=cds.MS.gene032323.t1;Parent=MS.gene032323.t1 |
| chr8.2 | exon | 48238038 | 48238163 | 48238038 | ID=MS.gene032323.t1.exon7;Parent=MS.gene032323.t1 |
| chr8.2 | CDS | 48238038 | 48238163 | 48238038 | ID=cds.MS.gene032323.t1;Parent=MS.gene032323.t1 |
| chr8.2 | exon | 48238313 | 48238387 | 48238313 | ID=MS.gene032323.t1.exon8;Parent=MS.gene032323.t1 |
| chr8.2 | CDS | 48238313 | 48238387 | 48238313 | ID=cds.MS.gene032323.t1;Parent=MS.gene032323.t1 |
| chr8.2 | exon | 48238582 | 48238707 | 48238582 | ID=MS.gene032323.t1.exon9;Parent=MS.gene032323.t1 |
| chr8.2 | CDS | 48238582 | 48238707 | 48238582 | ID=cds.MS.gene032323.t1;Parent=MS.gene032323.t1 |
| chr8.2 | exon | 48239243 | 48239312 | 48239243 | ID=MS.gene032323.t1.exon10;Parent=MS.gene032323.t1 |
| chr8.2 | CDS | 48239243 | 48239312 | 48239243 | ID=cds.MS.gene032323.t1;Parent=MS.gene032323.t1 |
| chr8.2 | exon | 48239568 | 48239650 | 48239568 | ID=MS.gene032323.t1.exon11;Parent=MS.gene032323.t1 |
| chr8.2 | CDS | 48239568 | 48239650 | 48239568 | ID=cds.MS.gene032323.t1;Parent=MS.gene032323.t1 |
| chr8.2 | exon | 48240669 | 48240782 | 48240669 | ID=MS.gene032323.t1.exon12;Parent=MS.gene032323.t1 |
| chr8.2 | CDS | 48240669 | 48240782 | 48240669 | ID=cds.MS.gene032323.t1;Parent=MS.gene032323.t1 |
| chr8.2 | exon | 48241750 | 48241846 | 48241750 | ID=MS.gene032323.t1.exon13;Parent=MS.gene032323.t1 |
| chr8.2 | CDS | 48241750 | 48241846 | 48241750 | ID=cds.MS.gene032323.t1;Parent=MS.gene032323.t1 |
| chr8.2 | exon | 48242780 | 48242815 | 48242780 | ID=MS.gene032323.t1.exon14;Parent=MS.gene032323.t1 |
| chr8.2 | CDS | 48242780 | 48242815 | 48242780 | ID=cds.MS.gene032323.t1;Parent=MS.gene032323.t1 |
| chr8.2 | exon | 48243491 | 48243592 | 48243491 | ID=MS.gene032323.t1.exon15;Parent=MS.gene032323.t1 |
| chr8.2 | CDS | 48243491 | 48243592 | 48243491 | ID=cds.MS.gene032323.t1;Parent=MS.gene032323.t1 |
| Gene Sequence |
| Protein sequence |