Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene032323.t1 | XP_003628452.2 | 99.4 | 523 | 3 | 0 | 1 | 523 | 17 | 539 | 9.30E-304 | 1052 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene032323.t1 | B3DNN5 | 75.0 | 529 | 123 | 5 | 1 | 523 | 17 | 542 | 1.2e-219 | 763.8 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene032323.t1 | D0VFU6 | 99.4 | 523 | 3 | 0 | 1 | 523 | 17 | 539 | 6.7e-304 | 1052.0 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene032323.t1 | MTR_8g058380 | 99.426 | 523 | 3 | 0 | 1 | 523 | 17 | 539 | 0.0 | 1081 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene032323.t1 | AT1G78770 | 77.127 | 529 | 112 | 5 | 1 | 523 | 17 | 542 | 0.0 | 808 |
Find 118 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
GAAAACCAATAATGATTTAT+TGG | 0.178881 | 8.2:+48237816 | MS.gene032323:CDS |
GCAGGCCAATAAATCATTAT+TGG | 0.215518 | 8.2:-48237821 | None:intergenic |
TGCATATACTTACCACTTAC+AGG | 0.260832 | 8.2:+48241825 | MS.gene032323:CDS |
TTGATTTCGTCATTGCAATT+TGG | 0.265331 | 8.2:+48237564 | MS.gene032323:CDS |
TCCTTACTCTTTCATATAAT+AGG | 0.285237 | 8.2:-48239635 | None:intergenic |
CACTTACCAGCTCTTTATAT+TGG | 0.295284 | 8.2:+48239247 | MS.gene032323:CDS |
AGTGAAAGTGGCAACTTTAT+CGG | 0.305469 | 8.2:-48233900 | None:intergenic |
CAGCTATAAGCTTGCTGAAC+AGG | 0.316612 | 8.2:+48239291 | MS.gene032323:CDS |
ACTGCAGCTCGATTATTTCC+TGG | 0.319914 | 8.2:+48238685 | MS.gene032323:CDS |
ATCTTTATCCAAGTAGATAT+TGG | 0.322898 | 8.2:-48234146 | None:intergenic |
GATTCCACTCGTTCAATTCC+TGG | 0.326570 | 8.2:-48234060 | None:intergenic |
GTACTAATGTGCTCTTGATA+TGG | 0.332010 | 8.2:-48238059 | None:intergenic |
ATGATAGTATTCAGCTTTGC+AGG | 0.345674 | 8.2:-48237839 | None:intergenic |
GAGGTCACGGAGGACGATTT+TGG | 0.378773 | 8.2:-48234008 | None:intergenic |
CATAATATGAAATTGCTTCT+CGG | 0.388953 | 8.2:-48241756 | None:intergenic |
CTGGCAGCTGCTATGGAGCT+TGG | 0.390830 | 8.2:+48238084 | MS.gene032323:CDS |
CAAGAGCACATTAGTACATC+TGG | 0.399689 | 8.2:+48238065 | MS.gene032323:CDS |
GTTAAATTTACTTGAAATAA+CGG | 0.399730 | 8.2:-48238376 | None:intergenic |
CACTTAAAGCGGTAGGGATG+AGG | 0.421874 | 8.2:-48240708 | None:intergenic |
GGTGGAAGGCGCGGCGGTAA+TGG | 0.429908 | 8.2:-48233973 | None:intergenic |
ACTTGAAATAACGGCGGGAT+TGG | 0.433856 | 8.2:-48238367 | None:intergenic |
CGCGGCGGTAATGGCGGCCG+AGG | 0.434092 | 8.2:-48233964 | None:intergenic |
AATAAATACATTAGAGTTCA+AGG | 0.434201 | 8.2:-48243580 | None:intergenic |
AATGTGTACCTCATAGCATA+AGG | 0.443763 | 8.2:-48235883 | None:intergenic |
AGTACATCTGGCAGCTGCTA+TGG | 0.448725 | 8.2:+48238077 | MS.gene032323:CDS |
TGGCAGCTGCTATGGAGCTT+GGG | 0.450830 | 8.2:+48238085 | MS.gene032323:CDS |
TTCAGTGTGCAGAAGAAAGA+AGG | 0.450980 | 8.2:-48237796 | None:intergenic |
TCAGTGCAGAACTGATCATC+TGG | 0.451911 | 8.2:-48243506 | None:intergenic |
TTCCCATAGCCTATCCATGC+AGG | 0.454837 | 8.2:-48238613 | None:intergenic |
TAATGCCGCCAATATCTACT+TGG | 0.459731 | 8.2:+48234138 | MS.gene032323:CDS |
TTATTCTTGTTTGATTAAGA+AGG | 0.461366 | 8.2:+48237614 | MS.gene032323:CDS |
AGCTAAAGAAGAGGGTGATC+AGG | 0.462934 | 8.2:+48238645 | MS.gene032323:CDS |
CTGCAGCTCGATTATTTCCT+GGG | 0.463353 | 8.2:+48238686 | MS.gene032323:CDS |
TGAGCAATATTGACTAAAGT+TGG | 0.467691 | 8.2:-48240742 | None:intergenic |
GGCACTGTGCGGCGAGGTAG+CGG | 0.468158 | 8.2:-48234036 | None:intergenic |
AGCTCTAGAAAACCGTTCTC+AGG | 0.482124 | 8.2:+48235612 | MS.gene032323:CDS |
TGCTCATGCATGCAGAAAGT+TGG | 0.488077 | 8.2:+48240759 | MS.gene032323:CDS |
TGTTGTTTAGGGCTTCATCA+TGG | 0.488358 | 8.2:+48238303 | MS.gene032323:intron |
TCTGCACTGAAATGTTAAGC+TGG | 0.488942 | 8.2:+48243519 | MS.gene032323:CDS |
CCTCGCCGCACAGTGCCTCC+AGG | 0.489249 | 8.2:+48234042 | MS.gene032323:CDS |
TGCAGGGTCGTTAGTGAAAG+TGG | 0.496912 | 8.2:-48233912 | None:intergenic |
CCACTTGTGTATAACGAACT+AGG | 0.501430 | 8.2:+48239604 | MS.gene032323:CDS |
ACCAGCTCTTTATATTGGAA+TGG | 0.501493 | 8.2:+48239252 | MS.gene032323:CDS |
TTCAGCAAGCTTATAGCTGT+GGG | 0.502131 | 8.2:-48239287 | None:intergenic |
GCTTCATCATGGTTTGCTGT+TGG | 0.502404 | 8.2:+48238314 | MS.gene032323:CDS |
GTGCGGCGAGGTAGCGGAAG+CGG | 0.503503 | 8.2:-48234030 | None:intergenic |
CACATGCTTACATGTGATGA+AGG | 0.505528 | 8.2:+48237396 | MS.gene032323:CDS |
TTTAACCTCCTCACCGAGCA+TGG | 0.511312 | 8.2:-48234092 | None:intergenic |
ATATTACAGTTTGCTTGAGA+AGG | 0.520023 | 8.2:+48238029 | MS.gene032323:intron |
CATGTTTCACTTAAAGCGGT+AGG | 0.524123 | 8.2:-48240715 | None:intergenic |
GTTCTCAAGATCTCTAAACT+TGG | 0.526440 | 8.2:-48237746 | None:intergenic |
ATCAAATGAACTTTATCTGA+TGG | 0.529595 | 8.2:+48238110 | MS.gene032323:CDS |
ACAAGTTTGAGCACTTATGC+TGG | 0.530284 | 8.2:+48241799 | MS.gene032323:CDS |
AGAAGATCGCGGAGGAGTAG+AGG | 0.538294 | 8.2:-48233874 | None:intergenic |
CCCCTGCATGGATAGGCTAT+GGG | 0.540578 | 8.2:+48238611 | MS.gene032323:CDS |
GTCATTGCAATTTGGAAGTG+AGG | 0.540735 | 8.2:+48237572 | MS.gene032323:CDS |
AGCGGATCCCTTATGCTATG+AGG | 0.542168 | 8.2:+48235875 | MS.gene032323:CDS |
TCCATTCCAATATAAAGAGC+TGG | 0.542867 | 8.2:-48239253 | None:intergenic |
GTTCAGCAAGCTTATAGCTG+TGG | 0.543435 | 8.2:-48239288 | None:intergenic |
GGAGGCGTTGAGGAGGTGGA+AGG | 0.544257 | 8.2:-48233987 | None:intergenic |
GCGTGCATATAGATATCTGC+AGG | 0.544834 | 8.2:-48233929 | None:intergenic |
CTGCACTGAAATGTTAAGCT+GGG | 0.545603 | 8.2:+48243520 | MS.gene032323:CDS |
GGAAGGCGCGGCGGTAATGG+CGG | 0.546984 | 8.2:-48233970 | None:intergenic |
ATGTGTACCTCATAGCATAA+GGG | 0.547549 | 8.2:-48235882 | None:intergenic |
TTGCAATTTGGAAGTGAGGA+TGG | 0.551069 | 8.2:+48237576 | MS.gene032323:CDS |
CAATATAAAGAGCTGGTAAG+TGG | 0.552656 | 8.2:-48239246 | None:intergenic |
CTCCCATGTTTCACTTAAAG+CGG | 0.554446 | 8.2:-48240719 | None:intergenic |
AATTTACTTGAAATAACGGC+GGG | 0.554608 | 8.2:-48238372 | None:intergenic |
CTACCGCTTTAAGTGAAACA+TGG | 0.558823 | 8.2:+48240716 | MS.gene032323:CDS |
CGTTGAGGAGGTGGAAGGCG+CGG | 0.558995 | 8.2:-48233982 | None:intergenic |
AATCAATGTCTTTCCATGCT+CGG | 0.562083 | 8.2:+48234079 | MS.gene032323:CDS |
ACTTAAAGCGGTAGGGATGA+GGG | 0.569326 | 8.2:-48240707 | None:intergenic |
AATACATTAGAGTTCAAGGT+GGG | 0.570088 | 8.2:-48243576 | None:intergenic |
TCTTTCCATGCTCGGTGAGG+AGG | 0.570350 | 8.2:+48234087 | MS.gene032323:CDS |
GGTAGCGGAAGCGGAGGTCA+CGG | 0.570641 | 8.2:-48234021 | None:intergenic |
ATGTTTCACTTAAAGCGGTA+GGG | 0.572738 | 8.2:-48240714 | None:intergenic |
TTTATCCAAGTAGATATTGG+CGG | 0.573210 | 8.2:-48234143 | None:intergenic |
TCATTTCAGATACCTGTAAG+TGG | 0.574080 | 8.2:-48241837 | None:intergenic |
TCCCATAGCCTATCCATGCA+GGG | 0.576651 | 8.2:-48238612 | None:intergenic |
CCTAGTTCGTTATACACAAG+TGG | 0.581962 | 8.2:-48239604 | None:intergenic |
ACCGTTCTCAGGCTCGATCG+TGG | 0.582145 | 8.2:+48235623 | MS.gene032323:CDS |
CCAGTATGACAAAGAAATTG+TGG | 0.584615 | 8.2:+48237717 | MS.gene032323:intron |
TGCATTTGCAGCTAAAGAAG+AGG | 0.589323 | 8.2:+48238636 | MS.gene032323:CDS |
ACCACGATCGAGCCTGAGAA+CGG | 0.595233 | 8.2:-48235624 | None:intergenic |
GCTGCAATATGTTTCTTGAG+AGG | 0.595651 | 8.2:+48235577 | MS.gene032323:CDS |
GATGGCATGCAATTTAGTGA+AGG | 0.598718 | 8.2:+48238128 | MS.gene032323:CDS |
AATGTGCTCTTGATATGGAA+AGG | 0.600025 | 8.2:-48238054 | None:intergenic |
CACGCACAGTCTCTATTCCT+CGG | 0.603758 | 8.2:+48233947 | MS.gene032323:CDS |
AGAAGAAAGAAGGATTAGAC+TGG | 0.603889 | 8.2:-48237786 | None:intergenic |
GAGGTTAAAGTTGATGAACA+TGG | 0.612701 | 8.2:+48234106 | MS.gene032323:CDS |
AATTTGGAAGTGAGGATGGA+TGG | 0.616560 | 8.2:+48237580 | MS.gene032323:CDS |
GCCTCCAGGAATTGAACGAG+TGG | 0.620608 | 8.2:+48234056 | MS.gene032323:CDS |
CGGCGAGGTAGCGGAAGCGG+AGG | 0.628006 | 8.2:-48234027 | None:intergenic |
TACCGCTTTAAGTGAAACAT+GGG | 0.632859 | 8.2:+48240717 | MS.gene032323:CDS |
CCATAGCCTATCCATGCAGG+GGG | 0.632890 | 8.2:-48238610 | None:intergenic |
CCCATAGCCTATCCATGCAG+GGG | 0.636273 | 8.2:-48238611 | None:intergenic |
ATCTACTTGGATAAAGATCG+TGG | 0.636532 | 8.2:+48234151 | MS.gene032323:CDS |
GCATTTGCAGCTAAAGAAGA+GGG | 0.638014 | 8.2:+48238637 | MS.gene032323:CDS |
GTACAAAGCGGCTATAAAAG+CGG | 0.663295 | 8.2:+48235857 | MS.gene032323:CDS |
CAATTCCTGGAGGCACTGTG+CGG | 0.663746 | 8.2:-48234047 | None:intergenic |
GGTATAAGAAAGCAGTGTGG+TGG | 0.663981 | 8.2:+48240668 | MS.gene032323:intron |
CCTGGAGGCACTGTGCGGCG+AGG | 0.666034 | 8.2:-48234042 | None:intergenic |
ATAGATGAAAGTAGAAGCAG+CGG | 0.669594 | 8.2:+48243548 | MS.gene032323:CDS |
ATGTCTTTCCATGCTCGGTG+AGG | 0.672682 | 8.2:+48234084 | MS.gene032323:CDS |
TCATTGAAAATCAGGCGTTG+TGG | 0.678575 | 8.2:+48243477 | MS.gene032323:intron |
AAATTTACTTGAAATAACGG+CGG | 0.680832 | 8.2:-48238373 | None:intergenic |
TCCACTCGTTCAATTCCTGG+AGG | 0.681004 | 8.2:-48234057 | None:intergenic |
TGAGGAGGTGGAAGGCGCGG+CGG | 0.684256 | 8.2:-48233979 | None:intergenic |
ATACATTAGAGTTCAAGGTG+GGG | 0.688678 | 8.2:-48243575 | None:intergenic |
CGTGCATATAGATATCTGCA+GGG | 0.695996 | 8.2:-48233928 | None:intergenic |
GCTGAATACTATCATCAGTG+TGG | 0.709549 | 8.2:+48237847 | MS.gene032323:CDS |
TTTATCGGCGAAGAAGATCG+CGG | 0.717768 | 8.2:-48233885 | None:intergenic |
AGCGGAAGCGGAGGTCACGG+AGG | 0.720457 | 8.2:-48234018 | None:intergenic |
AAATACATTAGAGTTCAAGG+TGG | 0.720919 | 8.2:-48243577 | None:intergenic |
GAAATAATCGAGCTGCAGTG+CGG | 0.737569 | 8.2:-48238681 | None:intergenic |
ATCGGCGAAGAAGATCGCGG+AGG | 0.749287 | 8.2:-48233882 | None:intergenic |
CATAGCCTATCCATGCAGGG+GGG | 0.751409 | 8.2:-48238609 | None:intergenic |
TCAGGTATAAGAAAGCAGTG+TGG | 0.802084 | 8.2:+48240665 | MS.gene032323:intron |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr8.2 | gene | 48233863 | 48243592 | 48233863 | ID=MS.gene032323 |
chr8.2 | mRNA | 48233863 | 48243592 | 48233863 | ID=MS.gene032323.t1;Parent=MS.gene032323 |
chr8.2 | exon | 48233863 | 48234183 | 48233863 | ID=MS.gene032323.t1.exon1;Parent=MS.gene032323.t1 |
chr8.2 | CDS | 48233863 | 48234183 | 48233863 | ID=cds.MS.gene032323.t1;Parent=MS.gene032323.t1 |
chr8.2 | exon | 48235571 | 48235644 | 48235571 | ID=MS.gene032323.t1.exon2;Parent=MS.gene032323.t1 |
chr8.2 | CDS | 48235571 | 48235644 | 48235571 | ID=cds.MS.gene032323.t1;Parent=MS.gene032323.t1 |
chr8.2 | exon | 48235857 | 48235896 | 48235857 | ID=MS.gene032323.t1.exon3;Parent=MS.gene032323.t1 |
chr8.2 | CDS | 48235857 | 48235896 | 48235857 | ID=cds.MS.gene032323.t1;Parent=MS.gene032323.t1 |
chr8.2 | exon | 48237372 | 48237417 | 48237372 | ID=MS.gene032323.t1.exon4;Parent=MS.gene032323.t1 |
chr8.2 | CDS | 48237372 | 48237417 | 48237372 | ID=cds.MS.gene032323.t1;Parent=MS.gene032323.t1 |
chr8.2 | exon | 48237556 | 48237635 | 48237556 | ID=MS.gene032323.t1.exon5;Parent=MS.gene032323.t1 |
chr8.2 | CDS | 48237556 | 48237635 | 48237556 | ID=cds.MS.gene032323.t1;Parent=MS.gene032323.t1 |
chr8.2 | exon | 48237721 | 48237902 | 48237721 | ID=MS.gene032323.t1.exon6;Parent=MS.gene032323.t1 |
chr8.2 | CDS | 48237721 | 48237902 | 48237721 | ID=cds.MS.gene032323.t1;Parent=MS.gene032323.t1 |
chr8.2 | exon | 48238038 | 48238163 | 48238038 | ID=MS.gene032323.t1.exon7;Parent=MS.gene032323.t1 |
chr8.2 | CDS | 48238038 | 48238163 | 48238038 | ID=cds.MS.gene032323.t1;Parent=MS.gene032323.t1 |
chr8.2 | exon | 48238313 | 48238387 | 48238313 | ID=MS.gene032323.t1.exon8;Parent=MS.gene032323.t1 |
chr8.2 | CDS | 48238313 | 48238387 | 48238313 | ID=cds.MS.gene032323.t1;Parent=MS.gene032323.t1 |
chr8.2 | exon | 48238582 | 48238707 | 48238582 | ID=MS.gene032323.t1.exon9;Parent=MS.gene032323.t1 |
chr8.2 | CDS | 48238582 | 48238707 | 48238582 | ID=cds.MS.gene032323.t1;Parent=MS.gene032323.t1 |
chr8.2 | exon | 48239243 | 48239312 | 48239243 | ID=MS.gene032323.t1.exon10;Parent=MS.gene032323.t1 |
chr8.2 | CDS | 48239243 | 48239312 | 48239243 | ID=cds.MS.gene032323.t1;Parent=MS.gene032323.t1 |
chr8.2 | exon | 48239568 | 48239650 | 48239568 | ID=MS.gene032323.t1.exon11;Parent=MS.gene032323.t1 |
chr8.2 | CDS | 48239568 | 48239650 | 48239568 | ID=cds.MS.gene032323.t1;Parent=MS.gene032323.t1 |
chr8.2 | exon | 48240669 | 48240782 | 48240669 | ID=MS.gene032323.t1.exon12;Parent=MS.gene032323.t1 |
chr8.2 | CDS | 48240669 | 48240782 | 48240669 | ID=cds.MS.gene032323.t1;Parent=MS.gene032323.t1 |
chr8.2 | exon | 48241750 | 48241846 | 48241750 | ID=MS.gene032323.t1.exon13;Parent=MS.gene032323.t1 |
chr8.2 | CDS | 48241750 | 48241846 | 48241750 | ID=cds.MS.gene032323.t1;Parent=MS.gene032323.t1 |
chr8.2 | exon | 48242780 | 48242815 | 48242780 | ID=MS.gene032323.t1.exon14;Parent=MS.gene032323.t1 |
chr8.2 | CDS | 48242780 | 48242815 | 48242780 | ID=cds.MS.gene032323.t1;Parent=MS.gene032323.t1 |
chr8.2 | exon | 48243491 | 48243592 | 48243491 | ID=MS.gene032323.t1.exon15;Parent=MS.gene032323.t1 |
chr8.2 | CDS | 48243491 | 48243592 | 48243491 | ID=cds.MS.gene032323.t1;Parent=MS.gene032323.t1 |
Gene Sequence |
Protein sequence |