Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene32240.t1 | XP_003628452.2 | 99.6 | 523 | 2 | 0 | 1 | 523 | 17 | 539 | 1.40E-304 | 1054.7 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene32240.t1 | B3DNN5 | 75.0 | 529 | 123 | 5 | 1 | 523 | 17 | 542 | 2.1e-219 | 763.1 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene32240.t1 | D0VFU6 | 99.6 | 523 | 2 | 0 | 1 | 523 | 17 | 539 | 1.0e-304 | 1054.7 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene052209 | MS.gene32240 | 0.814148 | 1.79E-51 | -1.69E-46 |
| MS.gene05652 | MS.gene32240 | 0.814765 | 1.30E-51 | -1.69E-46 |
| MS.gene057669 | MS.gene32240 | 0.818964 | 1.49E-52 | -1.69E-46 |
PPI:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene32240.t1 | MTR_8g058380 | 99.618 | 523 | 2 | 0 | 1 | 523 | 17 | 539 | 0.0 | 1086 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene32240.t1 | AT1G78770 | 77.127 | 529 | 112 | 5 | 1 | 523 | 17 | 542 | 0.0 | 809 |
Find 117 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GAAAACCAATAATGATTTAT+TGG | 0.178881 | 8.3:+48249173 | MS.gene32240:CDS |
| GCAGGCCAATAAATCATTAT+TGG | 0.215518 | 8.3:-48249178 | None:intergenic |
| TGCATATACTTACCACTTAC+AGG | 0.260832 | 8.3:+48253188 | MS.gene32240:CDS |
| TTGATTTCGTCATTGCAATT+TGG | 0.265331 | 8.3:+48248921 | MS.gene32240:CDS |
| TCCTTACTCTTTCATATAAT+AGG | 0.285237 | 8.3:-48250978 | None:intergenic |
| CACTTACCAGCTCTTTATAT+TGG | 0.295284 | 8.3:+48250590 | MS.gene32240:CDS |
| GGTGAAAGTGGCAACTTTAT+CGG | 0.303029 | 8.3:-48245261 | None:intergenic |
| CAGCTATAAGCTTGCTGAAC+AGG | 0.316612 | 8.3:+48250634 | MS.gene32240:CDS |
| ACTGCAGCTCGATTATTTCC+TGG | 0.319914 | 8.3:+48250028 | MS.gene32240:CDS |
| ATCTTTATCCAAGTAGATAT+TGG | 0.322898 | 8.3:-48245507 | None:intergenic |
| GATTCCACTCGTTCAATTCC+TGG | 0.326570 | 8.3:-48245421 | None:intergenic |
| GTACTAATGTGCTCTTGATA+TGG | 0.332010 | 8.3:-48249403 | None:intergenic |
| ATGATAGTATTCAGCTTTGC+AGG | 0.345674 | 8.3:-48249196 | None:intergenic |
| GAGGTCACGGAGGACGATTT+TGG | 0.378773 | 8.3:-48245369 | None:intergenic |
| CATAATATGAAATTGCTTCT+CGG | 0.388953 | 8.3:-48253119 | None:intergenic |
| CTGGCAGCTGCTATGGAGCT+TGG | 0.390830 | 8.3:+48249428 | MS.gene32240:CDS |
| CAAGAGCACATTAGTACATC+TGG | 0.399689 | 8.3:+48249409 | MS.gene32240:CDS |
| GTTAAATTTACTTGAAATAA+CGG | 0.399730 | 8.3:-48249720 | None:intergenic |
| CACTTAAAGCGGTAGGGATG+AGG | 0.421874 | 8.3:-48252053 | None:intergenic |
| GGTGGAAGGCGCGGCGGTAA+TGG | 0.429908 | 8.3:-48245334 | None:intergenic |
| ACTTGAAATAACGGCGGGAT+TGG | 0.433856 | 8.3:-48249711 | None:intergenic |
| CGCGGCGGTAATGGCGGCCG+AGG | 0.434092 | 8.3:-48245325 | None:intergenic |
| AATAAATACATTAGAGTTCA+AGG | 0.434201 | 8.3:-48254943 | None:intergenic |
| AATGTGTACCTCATAGCATA+AGG | 0.443763 | 8.3:-48247222 | None:intergenic |
| AGTACATCTGGCAGCTGCTA+TGG | 0.448725 | 8.3:+48249421 | MS.gene32240:CDS |
| TGGCAGCTGCTATGGAGCTT+GGG | 0.450830 | 8.3:+48249429 | MS.gene32240:CDS |
| TCAGTGCAGAACTGATCATC+TGG | 0.451911 | 8.3:-48254869 | None:intergenic |
| TTCCCATAGCCTATCCATGC+AGG | 0.454837 | 8.3:-48249956 | None:intergenic |
| TAATGCCGCCAATATCTACT+TGG | 0.459731 | 8.3:+48245499 | MS.gene32240:CDS |
| TTATTCTTGTTTGATTAAGA+AGG | 0.461366 | 8.3:+48248971 | MS.gene32240:CDS |
| AGCTAAAGAAGAGGGTGATC+AGG | 0.462934 | 8.3:+48249988 | MS.gene32240:CDS |
| CTGCAGCTCGATTATTTCCT+GGG | 0.463353 | 8.3:+48250029 | MS.gene32240:CDS |
| TTCAGTGTGCGGAAGAAAGA+AGG | 0.467284 | 8.3:-48249153 | None:intergenic |
| TGAGCAATATTGACTAAAGT+TGG | 0.467691 | 8.3:-48252087 | None:intergenic |
| GGCACTGTGCGGCGAGGTAG+CGG | 0.468158 | 8.3:-48245397 | None:intergenic |
| AGCTCTAGAAAACCGTTCTC+AGG | 0.482124 | 8.3:+48246951 | MS.gene32240:CDS |
| TGCTCATGCATGCAGAAAGT+TGG | 0.488077 | 8.3:+48252104 | MS.gene32240:CDS |
| TGTTGTTTAGGGCTTCATCA+TGG | 0.488358 | 8.3:+48249647 | MS.gene32240:intron |
| TCTGCACTGAAATGTTAAGC+TGG | 0.488942 | 8.3:+48254882 | MS.gene32240:CDS |
| CCTCGCCGCACAGTGCCTCC+AGG | 0.489249 | 8.3:+48245403 | MS.gene32240:CDS |
| CCACTTGTGTATAACGAACT+AGG | 0.501430 | 8.3:+48250947 | MS.gene32240:CDS |
| ACCAGCTCTTTATATTGGAA+TGG | 0.501493 | 8.3:+48250595 | MS.gene32240:CDS |
| TTCAGCAAGCTTATAGCTGT+GGG | 0.502131 | 8.3:-48250630 | None:intergenic |
| GCTTCATCATGGTTTGCTGT+TGG | 0.502404 | 8.3:+48249658 | MS.gene32240:CDS |
| GTGCGGCGAGGTAGCGGAAG+CGG | 0.503503 | 8.3:-48245391 | None:intergenic |
| CACATGCTTACATGTGATGA+AGG | 0.505528 | 8.3:+48248755 | MS.gene32240:CDS |
| TTTAACCTCCTCACCGAGCA+TGG | 0.511312 | 8.3:-48245453 | None:intergenic |
| ATATTACAGTTTGCTTGAGA+AGG | 0.520023 | 8.3:+48249373 | MS.gene32240:intron |
| CATGTTTCACTTAAAGCGGT+AGG | 0.524123 | 8.3:-48252060 | None:intergenic |
| GTTCTCAAGATCTCTAAACT+TGG | 0.526440 | 8.3:-48249103 | None:intergenic |
| ATCAAATGAACTTTATCTGA+TGG | 0.529595 | 8.3:+48249454 | MS.gene32240:CDS |
| ACAAGTTTGAGCACTTATGC+TGG | 0.530284 | 8.3:+48253162 | MS.gene32240:CDS |
| TGCAGGATCGTTGGTGAAAG+TGG | 0.537119 | 8.3:-48245273 | None:intergenic |
| CCCCTGCATGGATAGGCTAT+GGG | 0.540578 | 8.3:+48249954 | MS.gene32240:CDS |
| GTCATTGCAATTTGGAAGTG+AGG | 0.540735 | 8.3:+48248929 | MS.gene32240:CDS |
| AGCGGATCCCTTATGCTATG+AGG | 0.542168 | 8.3:+48247214 | MS.gene32240:CDS |
| TCCATTCCAATATAAAGAGC+TGG | 0.542867 | 8.3:-48250596 | None:intergenic |
| GTTCAGCAAGCTTATAGCTG+TGG | 0.543435 | 8.3:-48250631 | None:intergenic |
| CTGCACTGAAATGTTAAGCT+GGG | 0.545603 | 8.3:+48254883 | MS.gene32240:CDS |
| GGAAGGCGCGGCGGTAATGG+CGG | 0.546984 | 8.3:-48245331 | None:intergenic |
| ATGTGTACCTCATAGCATAA+GGG | 0.547549 | 8.3:-48247221 | None:intergenic |
| TTGCAATTTGGAAGTGAGGA+TGG | 0.551069 | 8.3:+48248933 | MS.gene32240:CDS |
| CAATATAAAGAGCTGGTAAG+TGG | 0.552656 | 8.3:-48250589 | None:intergenic |
| CTCCCATGTTTCACTTAAAG+CGG | 0.554446 | 8.3:-48252064 | None:intergenic |
| AATTTACTTGAAATAACGGC+GGG | 0.554608 | 8.3:-48249716 | None:intergenic |
| CTACCGCTTTAAGTGAAACA+TGG | 0.558823 | 8.3:+48252061 | MS.gene32240:CDS |
| AATCAATGTCTTTCCATGCT+CGG | 0.562083 | 8.3:+48245440 | MS.gene32240:CDS |
| GGATGCGTTGAGGAGGTGGA+AGG | 0.565078 | 8.3:-48245348 | None:intergenic |
| ACTTAAAGCGGTAGGGATGA+GGG | 0.569326 | 8.3:-48252052 | None:intergenic |
| AATACATTAGAGTTCAAGGT+GGG | 0.570088 | 8.3:-48254939 | None:intergenic |
| TCTTTCCATGCTCGGTGAGG+AGG | 0.570350 | 8.3:+48245448 | MS.gene32240:CDS |
| GGTAGCGGAAGCGGAGGTCA+CGG | 0.570641 | 8.3:-48245382 | None:intergenic |
| ATGTTTCACTTAAAGCGGTA+GGG | 0.572738 | 8.3:-48252059 | None:intergenic |
| TTTATCCAAGTAGATATTGG+CGG | 0.573210 | 8.3:-48245504 | None:intergenic |
| TCATTTCAGATACCTGTAAG+TGG | 0.574080 | 8.3:-48253200 | None:intergenic |
| ATAGATGTCTGCAGGATCGT+TGG | 0.575896 | 8.3:-48245282 | None:intergenic |
| TCCCATAGCCTATCCATGCA+GGG | 0.576651 | 8.3:-48249955 | None:intergenic |
| CCTAGTTCGTTATACACAAG+TGG | 0.581962 | 8.3:-48250947 | None:intergenic |
| ACCGTTCTCAGGCTCGATCG+TGG | 0.582145 | 8.3:+48246962 | MS.gene32240:CDS |
| CCAGTATGACAAAGAAATTG+TGG | 0.584615 | 8.3:+48249074 | MS.gene32240:intron |
| CGTTGAGGAGGTGGAAGGCG+CGG | 0.589170 | 8.3:-48245343 | None:intergenic |
| TGCATTTGCAGCTAAAGAAG+AGG | 0.589323 | 8.3:+48249979 | MS.gene32240:CDS |
| GAGGTTAAAGTCGATGAACA+TGG | 0.593022 | 8.3:+48245467 | MS.gene32240:CDS |
| ACCACGATCGAGCCTGAGAA+CGG | 0.595233 | 8.3:-48246963 | None:intergenic |
| GCTGCAATATGTTTCTTGAG+AGG | 0.595651 | 8.3:+48246916 | MS.gene32240:CDS |
| GATGGCATGCAATTTAGTGA+AGG | 0.598718 | 8.3:+48249472 | MS.gene32240:CDS |
| AATGTGCTCTTGATATGGAA+AGG | 0.600025 | 8.3:-48249398 | None:intergenic |
| CACGCACAGTCTCTATTCCT+CGG | 0.603758 | 8.3:+48245308 | MS.gene32240:CDS |
| AATTTGGAAGTGAGGATGGA+TGG | 0.616560 | 8.3:+48248937 | MS.gene32240:CDS |
| GCGTGCATATAGATGTCTGC+AGG | 0.617746 | 8.3:-48245290 | None:intergenic |
| GCCTCCAGGAATTGAACGAG+TGG | 0.620608 | 8.3:+48245417 | MS.gene32240:CDS |
| CGGCGAGGTAGCGGAAGCGG+AGG | 0.628006 | 8.3:-48245388 | None:intergenic |
| GGAAGAAAGAAGGATTAGAC+TGG | 0.629298 | 8.3:-48249143 | None:intergenic |
| TACCGCTTTAAGTGAAACAT+GGG | 0.632859 | 8.3:+48252062 | MS.gene32240:CDS |
| CCATAGCCTATCCATGCAGG+GGG | 0.632890 | 8.3:-48249953 | None:intergenic |
| CCCATAGCCTATCCATGCAG+GGG | 0.636273 | 8.3:-48249954 | None:intergenic |
| ATCTACTTGGATAAAGATCG+TGG | 0.636532 | 8.3:+48245512 | MS.gene32240:CDS |
| GCATTTGCAGCTAAAGAAGA+GGG | 0.638014 | 8.3:+48249980 | MS.gene32240:CDS |
| GTACAAAGCGGCTATAAAAG+CGG | 0.663295 | 8.3:+48247196 | MS.gene32240:CDS |
| CAATTCCTGGAGGCACTGTG+CGG | 0.663746 | 8.3:-48245408 | None:intergenic |
| GGTATAAGAAAGCAGTGTGG+TGG | 0.663981 | 8.3:+48252013 | MS.gene32240:intron |
| CCTGGAGGCACTGTGCGGCG+AGG | 0.666034 | 8.3:-48245403 | None:intergenic |
| ATAGATGAAAGTAGAAGCAG+CGG | 0.669594 | 8.3:+48254911 | MS.gene32240:CDS |
| ATGTCTTTCCATGCTCGGTG+AGG | 0.672682 | 8.3:+48245445 | MS.gene32240:CDS |
| TCATTGAAAATCAGGCGTTG+TGG | 0.678575 | 8.3:+48254840 | MS.gene32240:intron |
| AAATTTACTTGAAATAACGG+CGG | 0.680832 | 8.3:-48249717 | None:intergenic |
| TCCACTCGTTCAATTCCTGG+AGG | 0.681004 | 8.3:-48245418 | None:intergenic |
| TGAGGAGGTGGAAGGCGCGG+CGG | 0.684256 | 8.3:-48245340 | None:intergenic |
| ATACATTAGAGTTCAAGGTG+GGG | 0.688678 | 8.3:-48254938 | None:intergenic |
| GCTGAATACTATCATCAGTG+TGG | 0.709549 | 8.3:+48249204 | MS.gene32240:CDS |
| TTTATCGGCGAAGAAGATCG+CGG | 0.717768 | 8.3:-48245246 | None:intergenic |
| AGCGGAAGCGGAGGTCACGG+AGG | 0.720457 | 8.3:-48245379 | None:intergenic |
| AAATACATTAGAGTTCAAGG+TGG | 0.720919 | 8.3:-48254940 | None:intergenic |
| GAAATAATCGAGCTGCAGTG+CGG | 0.737569 | 8.3:-48250024 | None:intergenic |
| ATCGGCGAAGAAGATCGCGG+AGG | 0.749287 | 8.3:-48245243 | None:intergenic |
| CATAGCCTATCCATGCAGGG+GGG | 0.751409 | 8.3:-48249952 | None:intergenic |
| TCAGGTATAAGAAAGCAGTG+TGG | 0.802084 | 8.3:+48252010 | MS.gene32240:intron |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.3 | gene | 48245224 | 48254955 | 48245224 | ID=MS.gene32240 |
| chr8.3 | mRNA | 48245224 | 48254955 | 48245224 | ID=MS.gene32240.t1;Parent=MS.gene32240 |
| chr8.3 | exon | 48245224 | 48245544 | 48245224 | ID=MS.gene32240.t1.exon1;Parent=MS.gene32240.t1 |
| chr8.3 | CDS | 48245224 | 48245544 | 48245224 | ID=cds.MS.gene32240.t1;Parent=MS.gene32240.t1 |
| chr8.3 | exon | 48246910 | 48246983 | 48246910 | ID=MS.gene32240.t1.exon2;Parent=MS.gene32240.t1 |
| chr8.3 | CDS | 48246910 | 48246983 | 48246910 | ID=cds.MS.gene32240.t1;Parent=MS.gene32240.t1 |
| chr8.3 | exon | 48247196 | 48247235 | 48247196 | ID=MS.gene32240.t1.exon3;Parent=MS.gene32240.t1 |
| chr8.3 | CDS | 48247196 | 48247235 | 48247196 | ID=cds.MS.gene32240.t1;Parent=MS.gene32240.t1 |
| chr8.3 | exon | 48248731 | 48248776 | 48248731 | ID=MS.gene32240.t1.exon4;Parent=MS.gene32240.t1 |
| chr8.3 | CDS | 48248731 | 48248776 | 48248731 | ID=cds.MS.gene32240.t1;Parent=MS.gene32240.t1 |
| chr8.3 | exon | 48248913 | 48248992 | 48248913 | ID=MS.gene32240.t1.exon5;Parent=MS.gene32240.t1 |
| chr8.3 | CDS | 48248913 | 48248992 | 48248913 | ID=cds.MS.gene32240.t1;Parent=MS.gene32240.t1 |
| chr8.3 | exon | 48249078 | 48249259 | 48249078 | ID=MS.gene32240.t1.exon6;Parent=MS.gene32240.t1 |
| chr8.3 | CDS | 48249078 | 48249259 | 48249078 | ID=cds.MS.gene32240.t1;Parent=MS.gene32240.t1 |
| chr8.3 | exon | 48249382 | 48249507 | 48249382 | ID=MS.gene32240.t1.exon7;Parent=MS.gene32240.t1 |
| chr8.3 | CDS | 48249382 | 48249507 | 48249382 | ID=cds.MS.gene32240.t1;Parent=MS.gene32240.t1 |
| chr8.3 | exon | 48249657 | 48249731 | 48249657 | ID=MS.gene32240.t1.exon8;Parent=MS.gene32240.t1 |
| chr8.3 | CDS | 48249657 | 48249731 | 48249657 | ID=cds.MS.gene32240.t1;Parent=MS.gene32240.t1 |
| chr8.3 | exon | 48249925 | 48250050 | 48249925 | ID=MS.gene32240.t1.exon9;Parent=MS.gene32240.t1 |
| chr8.3 | CDS | 48249925 | 48250050 | 48249925 | ID=cds.MS.gene32240.t1;Parent=MS.gene32240.t1 |
| chr8.3 | exon | 48250586 | 48250655 | 48250586 | ID=MS.gene32240.t1.exon10;Parent=MS.gene32240.t1 |
| chr8.3 | CDS | 48250586 | 48250655 | 48250586 | ID=cds.MS.gene32240.t1;Parent=MS.gene32240.t1 |
| chr8.3 | exon | 48250911 | 48250993 | 48250911 | ID=MS.gene32240.t1.exon11;Parent=MS.gene32240.t1 |
| chr8.3 | CDS | 48250911 | 48250993 | 48250911 | ID=cds.MS.gene32240.t1;Parent=MS.gene32240.t1 |
| chr8.3 | exon | 48252014 | 48252127 | 48252014 | ID=MS.gene32240.t1.exon12;Parent=MS.gene32240.t1 |
| chr8.3 | CDS | 48252014 | 48252127 | 48252014 | ID=cds.MS.gene32240.t1;Parent=MS.gene32240.t1 |
| chr8.3 | exon | 48253113 | 48253209 | 48253113 | ID=MS.gene32240.t1.exon13;Parent=MS.gene32240.t1 |
| chr8.3 | CDS | 48253113 | 48253209 | 48253113 | ID=cds.MS.gene32240.t1;Parent=MS.gene32240.t1 |
| chr8.3 | exon | 48254143 | 48254178 | 48254143 | ID=MS.gene32240.t1.exon14;Parent=MS.gene32240.t1 |
| chr8.3 | CDS | 48254143 | 48254178 | 48254143 | ID=cds.MS.gene32240.t1;Parent=MS.gene32240.t1 |
| chr8.3 | exon | 48254854 | 48254955 | 48254854 | ID=MS.gene32240.t1.exon15;Parent=MS.gene32240.t1 |
| chr8.3 | CDS | 48254854 | 48254955 | 48254854 | ID=cds.MS.gene32240.t1;Parent=MS.gene32240.t1 |
| Gene Sequence |
| Protein sequence |