AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene042779

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene042779.t1 MTR_6g065120 95.627 343 14 1 1 342 1 343 0.0 681
MS.gene042779.t1 MTR_6g065270 78.994 338 67 1 9 342 6 343 0.0 568
MS.gene042779.t1 MTR_6g065400 77.876 339 75 0 3 341 2 340 0.0 565
MS.gene042779.t1 MTR_6g065370 77.581 339 76 0 3 341 2 340 0.0 564
MS.gene042779.t1 MTR_6g065110 71.765 340 95 1 1 339 1 340 0.0 532
MS.gene042779.t1 MTR_6g065340 75.294 340 68 1 2 341 12 335 0.0 527
MS.gene042779.t1 MTR_6g065430 60.423 331 122 2 8 336 6 329 4.58e-149 423
MS.gene042779.t1 MTR_1g082210 38.872 337 199 2 3 335 8 341 3.12e-82 253
MS.gene042779.t1 MTR_7g093950 38.053 339 201 4 5 335 10 347 9.43e-81 250
MS.gene042779.t1 MTR_1g089310 39.286 336 193 5 5 334 10 340 5.40e-78 243
MS.gene042779.t1 MTR_1g089310 39.286 336 193 5 5 334 26 356 9.57e-78 243
MS.gene042779.t1 MTR_6g464280 36.129 310 183 7 33 335 24 325 8.10e-53 177
MS.gene042779.t1 MTR_8g035520 35.452 299 171 7 50 337 40 327 3.02e-49 168
MS.gene042779.t1 MTR_8g035540 34.603 315 183 7 32 334 13 316 6.13e-49 167
MS.gene042779.t1 MTR_6g464510 35.357 280 159 7 30 299 25 292 1.17e-47 164
MS.gene042779.t1 MTR_7g406880 32.673 303 177 8 56 336 54 351 3.79e-47 163
MS.gene042779.t1 MTR_6g464320 33.962 318 195 7 25 335 17 326 1.18e-45 159
MS.gene042779.t1 MTR_1g102160 34.700 317 179 11 32 334 23 325 2.91e-44 155
MS.gene042779.t1 MTR_4g050140 32.632 285 174 4 61 336 42 317 2.80e-43 152
MS.gene042779.t1 MTR_8g035500 31.731 312 192 7 33 334 17 317 2.83e-42 149
MS.gene042779.t1 MTR_0007s0520 38.117 223 120 5 49 265 39 249 3.64e-42 149
MS.gene042779.t1 MTR_1g111280 33.333 303 169 10 49 334 52 338 1.62e-41 148
MS.gene042779.t1 MTR_1g012430 31.290 310 193 7 32 336 15 309 6.41e-41 145
MS.gene042779.t1 MTR_3g012440 32.229 332 190 8 32 336 19 342 8.47e-41 146
MS.gene042779.t1 MTR_4g086510 33.446 296 175 8 50 335 35 318 6.04e-39 140
MS.gene042779.t1 MTR_6g464120 34.454 238 136 6 33 265 29 251 9.45e-39 144
MS.gene042779.t1 MTR_1g102170 35.193 233 127 7 33 257 43 259 9.76e-39 140
MS.gene042779.t1 MTR_7g107040 29.532 342 204 8 11 339 4 321 2.43e-37 136
MS.gene042779.t1 MTR_4g086480 31.633 294 178 6 50 334 39 318 1.92e-36 134
MS.gene042779.t1 MTR_7g056207 30.619 307 186 8 44 335 56 350 8.35e-35 130
MS.gene042779.t1 MTR_4g086540 29.180 305 182 8 39 338 33 308 2.05e-33 126
MS.gene042779.t1 MTR_3g101420 29.667 300 181 7 50 336 34 316 8.47e-32 121
MS.gene042779.t1 MTR_4g086470 31.081 296 181 6 50 336 38 319 1.58e-31 121
MS.gene042779.t1 MTR_6g022710 29.787 282 158 5 90 333 154 433 8.50e-30 118
MS.gene042779.t1 MTR_1g105020 28.438 320 193 11 33 334 21 322 1.38e-27 110
MS.gene042779.t1 MTR_3g450680 27.211 294 186 8 54 332 48 328 8.62e-26 105
MS.gene042779.t1 MTR_5g005850 27.181 298 186 9 54 334 45 328 9.31e-26 105
MS.gene042779.t1 MTR_5g005900 28.000 325 197 13 32 336 21 328 1.09e-25 105
MS.gene042779.t1 MTR_5g005920 26.403 303 188 10 54 336 45 332 2.95e-25 104
MS.gene042779.t1 MTR_6g065470 36.842 171 76 3 8 160 6 162 5.72e-25 99.4
MS.gene042779.t1 MTR_8g040860 26.207 290 185 7 54 329 48 322 1.30e-23 99.8
MS.gene042779.t1 MTR_7g051020 29.102 323 192 11 32 336 24 327 1.78e-21 93.6
MS.gene042779.t1 MTR_1g104930 28.754 313 187 10 44 336 28 324 1.64e-20 90.9
MS.gene042779.t1 MTR_1g104933 28.966 290 176 8 60 336 46 318 2.73e-19 87.4
MS.gene042779.t1 MTR_0007s0480 40.404 99 50 3 172 265 1 95 5.74e-16 75.1
MS.gene042779.t1 MTR_6g065480 53.448 58 26 1 234 291 1 57 1.98e-14 67.4
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene042779.t1 AT5G23530 58.112 339 123 6 2 336 5 328 1.11e-146 417
MS.gene042779.t1 AT5G27320 39.403 335 193 3 6 335 11 340 2.49e-83 256
MS.gene042779.t1 AT3G63010 37.791 344 202 6 5 341 10 348 1.39e-76 239
MS.gene042779.t1 AT3G05120 36.716 335 204 2 6 335 11 342 1.80e-74 234
MS.gene042779.t1 AT5G62180 35.144 313 188 9 33 337 21 326 1.70e-52 176
MS.gene042779.t1 AT2G45600 32.313 294 175 7 60 340 39 321 7.37e-45 156
MS.gene042779.t1 AT2G45610 32.692 312 192 6 33 335 22 324 1.21e-44 155
MS.gene042779.t1 AT5G16080 31.788 302 179 7 49 339 54 339 1.21e-43 154
MS.gene042779.t1 AT1G68620 32.517 286 172 7 57 334 57 329 1.75e-42 150
MS.gene042779.t1 AT5G06570 34.365 323 181 9 32 338 22 329 1.45e-40 145
MS.gene042779.t1 AT5G06570 34.365 323 181 9 32 338 22 329 1.45e-40 145
MS.gene042779.t1 AT5G06570 34.365 323 181 9 32 338 37 344 1.85e-40 145
MS.gene042779.t1 AT5G06570 34.365 323 181 9 32 338 37 344 1.85e-40 145
MS.gene042779.t1 AT1G47480 29.179 329 209 9 14 338 5 313 1.56e-37 137
MS.gene042779.t1 AT1G19190 30.435 299 181 9 50 336 32 315 3.92e-34 128
MS.gene042779.t1 AT3G48700 29.642 307 181 8 50 334 32 325 2.52e-33 126
MS.gene042779.t1 AT3G48690 31.104 299 182 9 50 334 32 320 6.69e-31 119
MS.gene042779.t1 AT5G14310 30.584 291 148 6 96 335 151 438 1.01e-30 121
MS.gene042779.t1 AT2G03550 30.201 298 180 8 50 336 32 312 2.61e-30 117
MS.gene042779.t1 AT3G27320 27.429 350 166 7 48 314 48 392 8.67e-30 118
MS.gene042779.t1 AT3G27320 31.095 283 145 7 73 314 151 424 6.93e-29 116
MS.gene042779.t1 AT1G49640 30.588 255 161 9 31 282 17 258 1.98e-26 107
MS.gene042779.t1 AT1G49660 29.362 235 152 4 54 282 36 262 2.60e-23 99.0
MS.gene042779.t1 AT1G49650 30.469 256 161 7 54 302 92 337 9.18e-23 98.2

Find 106 sgRNAs with CRISPR-Local

Find 133 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CACCGGAAGGGTGGCGGTTT+TGG 0.181057 6.1:-61360928 None:intergenic
AGACAGTGCCGGTGCAAATT+TGG 0.247856 6.1:+61361193 MS.gene042779:CDS
TTGGTGGAAACGCCGTTAAC+AGG 0.301029 6.1:-61360816 None:intergenic
CTCCGGGAAATCCGGGTTAT+CGG 0.301895 6.1:+61361251 MS.gene042779:CDS
TTTCCTGATTTGCCTGAATC+TGG 0.312500 6.1:+61361605 MS.gene042779:CDS
TGCCGAGGATTTGTCAGGTT+TGG 0.328126 6.1:+61361442 MS.gene042779:CDS
AAGCGGGGCTCCGGGAAATC+CGG 0.331116 6.1:+61361243 MS.gene042779:CDS
TTTCCAAGGGAGTACGGGTT+TGG 0.340916 6.1:-61360676 None:intergenic
GGGTTTGCAAAGCGGGGCTC+CGG 0.345745 6.1:+61361234 MS.gene042779:CDS
GCGTCATAAGCAAATGAATC+AGG 0.346502 6.1:-61360990 None:intergenic
GGCGTTAACGATAACGTCTT+TGG 0.348769 6.1:-61360835 None:intergenic
GGCACATCACGTTGCGGTTA+GGG 0.350643 6.1:+61361214 MS.gene042779:CDS
CACCAAAACCGCCACCCTTC+CGG 0.359575 6.1:+61360926 MS.gene042779:CDS
TGGCACATCACGTTGCGGTT+AGG 0.366316 6.1:+61361213 MS.gene042779:CDS
AGTACGGGTTTGGGTTTGTT+TGG 0.366771 6.1:-61360666 None:intergenic
ACCCGATAACCCGGATTTCC+CGG 0.367802 6.1:-61361253 None:intergenic
GCGGTTAGGGTTTGCAAAGC+GGG 0.370441 6.1:+61361227 MS.gene042779:CDS
GGCAAAAGAGGTATTATGAT+TGG 0.376841 6.1:+61361516 MS.gene042779:CDS
TGACCAGATTCAGGCAAATC+AGG 0.378189 6.1:-61361608 None:intergenic
TTCCAAGGGAGTACGGGTTT+GGG 0.379702 6.1:-61360675 None:intergenic
TTGCTTATGACGCTGTTTGC+CGG 0.381990 6.1:+61361000 MS.gene042779:CDS
CCGTTAACAGGGATGGCGTT+AGG 0.383299 6.1:-61360804 None:intergenic
GATTTGATCCTTTAAATGAT+TGG 0.392667 6.1:+61361495 MS.gene042779:CDS
GGCGGAACTGACGGTGGTAG+TGG 0.399579 6.1:-61360889 None:intergenic
CGTTAACAGGGATGGCGTTA+GGG 0.417430 6.1:-61360803 None:intergenic
CCTAACGCCATCCCTGTTAA+CGG 0.424067 6.1:+61360804 MS.gene042779:CDS
CCGAATGCCGAGGATTTGTC+AGG 0.424166 6.1:+61361437 MS.gene042779:CDS
AAATGAATCAGGGGTGAGAT+AGG 0.429334 6.1:-61360979 None:intergenic
ATTTGCACCGGCACTGTCTC+CGG 0.436925 6.1:-61361189 None:intergenic
AGAGGACGGAGGCGGAGATT+AGG 0.439237 6.1:+61361309 MS.gene042779:CDS
GGTTTGCAAAGCGGGGCTCC+GGG 0.441626 6.1:+61361235 MS.gene042779:CDS
AGGGGAGGAGAGGACGGAGG+CGG 0.443253 6.1:+61361301 MS.gene042779:CDS
AGCGGGGCTCCGGGAAATCC+GGG 0.447736 6.1:+61361244 MS.gene042779:CDS
CTTTAAATGATTGGCAAAAG+AGG 0.459493 6.1:+61361504 MS.gene042779:CDS
AGCGTTTCTACCGGAGGGAT+CGG 0.461923 6.1:+61361382 MS.gene042779:CDS
TGGAGGGGAGGAGAGGACGG+AGG 0.462304 6.1:+61361298 MS.gene042779:CDS
AACCCAAACCCGTACTCCCT+TGG 0.463231 6.1:+61360673 MS.gene042779:CDS
ATAATCAACTGACCAGATTC+AGG 0.464786 6.1:-61361617 None:intergenic
GCGAGATTTCCAAGGGAGTA+CGG 0.466645 6.1:-61360682 None:intergenic
CCTGACAAATCCTCGGCATT+CGG 0.469812 6.1:-61361437 None:intergenic
CGGCGTGTGACGGTAGTTAA+CGG 0.472886 6.1:-61361057 None:intergenic
TCCGGGAAATCCGGGTTATC+GGG 0.476250 6.1:+61361252 MS.gene042779:CDS
CGAGATTTCCAAGGGAGTAC+GGG 0.479233 6.1:-61360681 None:intergenic
TTAACGCCGAAAATAACGTT+TGG 0.482150 6.1:+61360850 MS.gene042779:CDS
CATGGTGCGGTTAATGTATG+TGG 0.498651 6.1:+61361413 MS.gene042779:CDS
TGTCGATGGCGAGGACTGAT+TGG 0.513850 6.1:+61361351 MS.gene042779:CDS
TCGATACCAACCCGATAACC+CGG 0.516742 6.1:-61361262 None:intergenic
TGCGATGGATACCGATGCTC+CGG 0.517437 6.1:-61361077 None:intergenic
GTTATCTCCGGCGGAACTGA+CGG 0.520451 6.1:-61360898 None:intergenic
GAGGGATCGGATCGCGATCA+TGG 0.521713 6.1:+61361395 MS.gene042779:CDS
ATATTTGGACGAGAATAAAA+CGG 0.525878 6.1:+61361127 MS.gene042779:CDS
TTTGGTGTCGATGTTATCTC+CGG 0.526225 6.1:-61360910 None:intergenic
CTGTTTGCCGGAGATTCTGC+CGG 0.527620 6.1:+61361012 MS.gene042779:CDS
GATCTAAGAAATTAAGAAAA+CGG 0.534119 6.1:-61360770 None:intergenic
ACCGATGCTCCGGCGTGTGA+CGG 0.542887 6.1:-61361067 None:intergenic
CGGTTAGGGTTTGCAAAGCG+GGG 0.549323 6.1:+61361228 MS.gene042779:CDS
CGTCATAAGCAAATGAATCA+GGG 0.550916 6.1:-61360989 None:intergenic
GGGATCTCCATTGGTGTCGA+TGG 0.551358 6.1:+61361337 MS.gene042779:CDS
ACTACCACCGTCAGTTCCGC+CGG 0.554372 6.1:+61360891 MS.gene042779:CDS
ACCGTCACACGCCGGAGCAT+CGG 0.554699 6.1:+61361066 MS.gene042779:CDS
AATGATCACCGGAAGGGTGG+CGG 0.554851 6.1:-61360934 None:intergenic
CTCCATTGGTGTCGATGGCG+AGG 0.555167 6.1:+61361342 MS.gene042779:CDS
GATGTGGAAAGCGTTTCTAC+CGG 0.560946 6.1:+61361373 MS.gene042779:CDS
TGCGGTTAGGGTTTGCAAAG+CGG 0.563025 6.1:+61361226 MS.gene042779:CDS
GCGGAACTGACGGTGGTAGT+GGG 0.565794 6.1:-61360888 None:intergenic
TGGCGAGGACTGATTGGATG+TGG 0.571085 6.1:+61361357 MS.gene042779:CDS
ATCCAAACCTGACAAATCCT+CGG 0.573134 6.1:-61361444 None:intergenic
TTTGTCAGGTTTGGATTACC+CGG 0.575736 6.1:+61361451 MS.gene042779:CDS
TGGTGGAAACGCCGTTAACA+GGG 0.577904 6.1:-61360815 None:intergenic
ATTGAAATGCGAGATTTCCA+AGG 0.579236 6.1:-61360690 None:intergenic
TAGGCTCGAGGGATCTCCAT+TGG 0.581167 6.1:+61361328 MS.gene042779:CDS
GATAGGTAAATCCACCTCCA+TGG 0.586090 6.1:-61360962 None:intergenic
GGAAATCCGGGTTATCGGGT+TGG 0.588626 6.1:+61361256 MS.gene042779:CDS
TTCCTCGCCGGAGACAGTGC+CGG 0.593734 6.1:+61361182 MS.gene042779:CDS
TGGTAGTGGGTGTGAAGAGA+CGG 0.595217 6.1:-61360875 None:intergenic
TCAGTTGATTATGCAAGTCA+AGG 0.597008 6.1:+61361628 MS.gene042779:CDS
GACGCTTCACGTCGCTCTAA+CGG 0.599989 6.1:+61360735 MS.gene042779:CDS
TGATCGCGATCCGATCCCTC+CGG 0.603595 6.1:-61361392 None:intergenic
GTCCTCGCCATCGACACCAA+TGG 0.604464 6.1:-61361344 None:intergenic
GGAAACGCCGTTAACAGGGA+TGG 0.608074 6.1:-61360811 None:intergenic
GTTAACGATAACGTCTTTGG+TGG 0.608902 6.1:-61360832 None:intergenic
CCATGGAAGAAAATGATCAC+CGG 0.609666 6.1:-61360945 None:intergenic
GTGTCAAAATGTTTCCTCGC+CGG 0.610413 6.1:+61361170 MS.gene042779:CDS
TCTCCATCGTCGTATTGCGA+TGG 0.613465 6.1:-61361092 None:intergenic
GTGATGTGCCAAATTTGCAC+CGG 0.615902 6.1:-61361201 None:intergenic
GTTAACAGGGATGGCGTTAG+GGG 0.618052 6.1:-61360802 None:intergenic
TTGAAATGCGAGATTTCCAA+GGG 0.618740 6.1:-61360689 None:intergenic
GGAAGAAAATGATCACCGGA+AGG 0.622089 6.1:-61360941 None:intergenic
GAAAATGATCACCGGAAGGG+TGG 0.622802 6.1:-61360937 None:intergenic
GTGGAAAGCGTTTCTACCGG+AGG 0.625356 6.1:+61361376 MS.gene042779:CDS
TGGAAAGCGTTTCTACCGGA+GGG 0.628695 6.1:+61361377 MS.gene042779:CDS
TATCCATCGCAATACGACGA+TGG 0.630849 6.1:+61361089 MS.gene042779:CDS
GGTGTCGATGTTATCTCCGG+CGG 0.631109 6.1:-61360907 None:intergenic
AAATTTGGCACATCACGTTG+CGG 0.634684 6.1:+61361208 MS.gene042779:CDS
GGAGGCGGAGATTAGGCTCG+AGG 0.635168 6.1:+61361316 MS.gene042779:CDS
ATGGTGCGGTTAATGTATGT+GGG 0.637043 6.1:+61361414 MS.gene042779:CDS
CACCGGCACTGTCTCCGGCG+AGG 0.645978 6.1:-61361184 None:intergenic
GTAGTTAACGGAGACAACAA+CGG 0.664859 6.1:-61361045 None:intergenic
ATCGGATCGCGATCATGGTG+CGG 0.665524 6.1:+61361400 MS.gene042779:CDS
GAAGAAAATGATCACCGGAA+GGG 0.667962 6.1:-61360940 None:intergenic
GTCATAAGCAAATGAATCAG+GGG 0.669245 6.1:-61360988 None:intergenic
ATCTCCGGCGGAACTGACGG+TGG 0.687333 6.1:-61360895 None:intergenic
GAGGCGGAGATTAGGCTCGA+GGG 0.689293 6.1:+61361317 MS.gene042779:CDS
CGTTAACTACCGTCACACGC+CGG 0.700316 6.1:+61361058 MS.gene042779:CDS
TGTATGTGGGCCGAATGCCG+AGG 0.703597 6.1:+61361427 MS.gene042779:CDS
CTAAGAAATTAAGAAAACGG+CGG 0.730991 6.1:-61360767 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! GATCTAAGAAATTAAGAAAA+CGG - chr6.1:61360773-61360792 None:intergenic 20.0%
!!! AATATAAAAAGCATGAATCA+TGG - chr6.1:61361585-61361604 None:intergenic 20.0%
!!! ATGATTGGTTGAAAAAATAT+GGG + chr6.1:61361531-61361550 MS.gene042779:CDS 20.0%
!!! TATGATTGGTTGAAAAAATA+TGG + chr6.1:61361530-61361549 MS.gene042779:CDS 20.0%
! ATATTTGGACGAGAATAAAA+CGG + chr6.1:61361127-61361146 MS.gene042779:CDS 25.0%
! GATTTGATCCTTTAAATGAT+TGG + chr6.1:61361495-61361514 MS.gene042779:CDS 25.0%
!!! AGAAGCTGTTTTGAAATATT+TGG + chr6.1:61361112-61361131 MS.gene042779:CDS 25.0%
CAATAAAAACAAGTGTATCC+GGG - chr6.1:61361472-61361491 None:intergenic 30.0%
CCAATAAAAACAAGTGTATC+CGG - chr6.1:61361473-61361492 None:intergenic 30.0%
CTAAGAAATTAAGAAAACGG+CGG - chr6.1:61360770-61360789 None:intergenic 30.0%
CTTTAAATGATTGGCAAAAG+AGG + chr6.1:61361504-61361523 MS.gene042779:CDS 30.0%
! CTCTTTTGCCAATCATTTAA+AGG - chr6.1:61361506-61361525 None:intergenic 30.0%
! TAAAAAGCATGAATCATGGT+TGG - chr6.1:61361581-61361600 None:intergenic 30.0%
!!! GATACACTTGTTTTTATTGG+TGG + chr6.1:61361473-61361492 MS.gene042779:CDS 30.0%
ATAATCAACTGACCAGATTC+AGG - chr6.1:61361620-61361639 None:intergenic 35.0%
ATTGAAATGCGAGATTTCCA+AGG - chr6.1:61360693-61360712 None:intergenic 35.0%
CGTCATAAGCAAATGAATCA+GGG - chr6.1:61360992-61361011 None:intergenic 35.0%
GTCATAAGCAAATGAATCAG+GGG - chr6.1:61360991-61361010 None:intergenic 35.0%
TCAGTTGATTATGCAAGTCA+AGG + chr6.1:61361628-61361647 MS.gene042779:CDS 35.0%
TTAACGCCGAAAATAACGTT+TGG + chr6.1:61360850-61360869 MS.gene042779:CDS 35.0%
TTGAAATGCGAGATTTCCAA+GGG - chr6.1:61360692-61360711 None:intergenic 35.0%
! CGAGAATAAAACGGTTTTAC+CGG + chr6.1:61361136-61361155 MS.gene042779:CDS 35.0%
!! ACGGAACCAAACGTTATTTT+CGG - chr6.1:61360859-61360878 None:intergenic 35.0%
!! GGCAAAAGAGGTATTATGAT+TGG + chr6.1:61361516-61361535 MS.gene042779:CDS 35.0%
!!! CCGGATACACTTGTTTTTAT+TGG + chr6.1:61361470-61361489 MS.gene042779:CDS 35.0%
AAATGAATCAGGGGTGAGAT+AGG - chr6.1:61360982-61361001 None:intergenic 40.0%
AAATTTGGCACATCACGTTG+CGG + chr6.1:61361208-61361227 MS.gene042779:CDS 40.0%
ATCCAAACCTGACAAATCCT+CGG - chr6.1:61361447-61361466 None:intergenic 40.0%
ATGGTGCGGTTAATGTATGT+GGG + chr6.1:61361414-61361433 MS.gene042779:CDS 40.0%
CCATGGAAGAAAATGATCAC+CGG - chr6.1:61360948-61360967 None:intergenic 40.0%
GAAGAAAATGATCACCGGAA+GGG - chr6.1:61360943-61360962 None:intergenic 40.0%
GCGTCATAAGCAAATGAATC+AGG - chr6.1:61360993-61361012 None:intergenic 40.0%
GTAGTTAACGGAGACAACAA+CGG - chr6.1:61361048-61361067 None:intergenic 40.0%
GTTAACGATAACGTCTTTGG+TGG - chr6.1:61360835-61360854 None:intergenic 40.0%
TTTGTCAGGTTTGGATTACC+CGG + chr6.1:61361451-61361470 MS.gene042779:CDS 40.0%
! ATCATTTTCTTCCATGGAGG+TGG + chr6.1:61360951-61360970 MS.gene042779:CDS 40.0%
! CAACAACGGCGTTAATTTTC+CGG - chr6.1:61361034-61361053 None:intergenic 40.0%
! GTGATCATTTTCTTCCATGG+AGG + chr6.1:61360948-61360967 MS.gene042779:CDS 40.0%
! TAATTTTCCGGCAGAATCTC+CGG - chr6.1:61361022-61361041 None:intergenic 40.0%
! TTTCCTGATTTGCCTGAATC+TGG + chr6.1:61361605-61361624 MS.gene042779:CDS 40.0%
! TTTGACACGTCAGCATTTTC+CGG - chr6.1:61361158-61361177 None:intergenic 40.0%
!! TTTGGTGTCGATGTTATCTC+CGG - chr6.1:61360913-61360932 None:intergenic 40.0%
CATGGTGCGGTTAATGTATG+TGG + chr6.1:61361413-61361432 MS.gene042779:CDS 45.0%
GATAGGTAAATCCACCTCCA+TGG - chr6.1:61360965-61360984 None:intergenic 45.0%
GGAAGAAAATGATCACCGGA+AGG - chr6.1:61360944-61360963 None:intergenic 45.0%
GGCGTTAACGATAACGTCTT+TGG - chr6.1:61360838-61360857 None:intergenic 45.0%
GTGATGTGCCAAATTTGCAC+CGG - chr6.1:61361204-61361223 None:intergenic 45.0%
GTGTCAAAATGTTTCCTCGC+CGG + chr6.1:61361170-61361189 MS.gene042779:CDS 45.0%
TATCCATCGCAATACGACGA+TGG + chr6.1:61361089-61361108 MS.gene042779:CDS 45.0%
TGACCAGATTCAGGCAAATC+AGG - chr6.1:61361611-61361630 None:intergenic 45.0%
TTGCTTATGACGCTGTTTGC+CGG + chr6.1:61361000-61361019 MS.gene042779:CDS 45.0%
! AGTACGGGTTTGGGTTTGTT+TGG - chr6.1:61360669-61360688 None:intergenic 45.0%
! CCGGTGATCATTTTCTTCCA+TGG + chr6.1:61360945-61360964 MS.gene042779:CDS 45.0%
!! GATGTGGAAAGCGTTTCTAC+CGG + chr6.1:61361373-61361392 MS.gene042779:CDS 45.0%
!!! GTATCGATCCAGCCGTTTTT+TGG + chr6.1:61361278-61361297 MS.gene042779:CDS 45.0%
CCTAACGCCATCCCTGTTAA+CGG + chr6.1:61360804-61360823 MS.gene042779:CDS 50.0%
CCTGACAAATCCTCGGCATT+CGG - chr6.1:61361440-61361459 None:intergenic 50.0%
CGTTAACAGGGATGGCGTTA+GGG - chr6.1:61360806-61360825 None:intergenic 50.0%
CTCTCCTCCCCTCCAAAAAA+CGG - chr6.1:61361293-61361312 None:intergenic 50.0%
GAAAATGATCACCGGAAGGG+TGG - chr6.1:61360940-61360959 None:intergenic 50.0%
GCGAGATTTCCAAGGGAGTA+CGG - chr6.1:61360685-61360704 None:intergenic 50.0%
GTTAACAGGGATGGCGTTAG+GGG - chr6.1:61360805-61360824 None:intergenic 50.0%
TCGATACCAACCCGATAACC+CGG - chr6.1:61361265-61361284 None:intergenic 50.0%
TCTCCATCGTCGTATTGCGA+TGG - chr6.1:61361095-61361114 None:intergenic 50.0%
TGCCGAGGATTTGTCAGGTT+TGG + chr6.1:61361442-61361461 MS.gene042779:CDS 50.0%
TGCGGTTAGGGTTTGCAAAG+CGG + chr6.1:61361226-61361245 MS.gene042779:CDS 50.0%
TGGTGGAAACGCCGTTAACA+GGG - chr6.1:61360818-61360837 None:intergenic 50.0%
TTGGTGGAAACGCCGTTAAC+AGG - chr6.1:61360819-61360838 None:intergenic 50.0%
! CGAGATTTCCAAGGGAGTAC+GGG - chr6.1:61360684-61360703 None:intergenic 50.0%
! TTCCAAGGGAGTACGGGTTT+GGG - chr6.1:61360678-61360697 None:intergenic 50.0%
! TTTCCAAGGGAGTACGGGTT+TGG - chr6.1:61360679-61360698 None:intergenic 50.0%
!! AGACAGTGCCGGTGCAAATT+TGG + chr6.1:61361193-61361212 MS.gene042779:CDS 50.0%
!! TGGAAAGCGTTTCTACCGGA+GGG + chr6.1:61361377-61361396 MS.gene042779:CDS 50.0%
!! TGGTAGTGGGTGTGAAGAGA+CGG - chr6.1:61360878-61360897 None:intergenic 50.0%
!!! CGATCCAGCCGTTTTTTGGA+GGG + chr6.1:61361282-61361301 MS.gene042779:CDS 50.0%
!!! GATCCAGCCGTTTTTTGGAG+GGG + chr6.1:61361283-61361302 MS.gene042779:CDS 50.0%
!!! TCGATCCAGCCGTTTTTTGG+AGG + chr6.1:61361281-61361300 MS.gene042779:CDS 50.0%
AACCCAAACCCGTACTCCCT+TGG + chr6.1:61360673-61360692 MS.gene042779:CDS 55.0%
AATGATCACCGGAAGGGTGG+CGG - chr6.1:61360937-61360956 None:intergenic 55.0%
ACCCGATAACCCGGATTTCC+CGG - chr6.1:61361256-61361275 None:intergenic 55.0%
AGCGTTTCTACCGGAGGGAT+CGG + chr6.1:61361382-61361401 MS.gene042779:CDS 55.0%
ATCGGATCGCGATCATGGTG+CGG + chr6.1:61361400-61361419 MS.gene042779:CDS 55.0%
CCGAATGCCGAGGATTTGTC+AGG + chr6.1:61361437-61361456 MS.gene042779:CDS 55.0%
CCGTTAACAGGGATGGCGTT+AGG - chr6.1:61360807-61360826 None:intergenic 55.0%
CGGCGTGTGACGGTAGTTAA+CGG - chr6.1:61361060-61361079 None:intergenic 55.0%
CGGTTAGGGTTTGCAAAGCG+GGG + chr6.1:61361228-61361247 MS.gene042779:CDS 55.0%
CGTTAACTACCGTCACACGC+CGG + chr6.1:61361058-61361077 MS.gene042779:CDS 55.0%
CTCCGGGAAATCCGGGTTAT+CGG + chr6.1:61361251-61361270 MS.gene042779:CDS 55.0%
CTGTTTGCCGGAGATTCTGC+CGG + chr6.1:61361012-61361031 MS.gene042779:CDS 55.0%
GACGCTTCACGTCGCTCTAA+CGG + chr6.1:61360735-61360754 MS.gene042779:CDS 55.0%
GCGGTTAGGGTTTGCAAAGC+GGG + chr6.1:61361227-61361246 MS.gene042779:CDS 55.0%
GGAAACGCCGTTAACAGGGA+TGG - chr6.1:61360814-61360833 None:intergenic 55.0%
GGAAATCCGGGTTATCGGGT+TGG + chr6.1:61361256-61361275 MS.gene042779:CDS 55.0%
GGCACATCACGTTGCGGTTA+GGG + chr6.1:61361214-61361233 MS.gene042779:CDS 55.0%
GTTATCTCCGGCGGAACTGA+CGG - chr6.1:61360901-61360920 None:intergenic 55.0%
TAGGCTCGAGGGATCTCCAT+TGG + chr6.1:61361328-61361347 MS.gene042779:CDS 55.0%
TCCGGGAAATCCGGGTTATC+GGG + chr6.1:61361252-61361271 MS.gene042779:CDS 55.0%
TGCGATGGATACCGATGCTC+CGG - chr6.1:61361080-61361099 None:intergenic 55.0%
TGGCACATCACGTTGCGGTT+AGG + chr6.1:61361213-61361232 MS.gene042779:CDS 55.0%
TGGCGAGGACTGATTGGATG+TGG + chr6.1:61361357-61361376 MS.gene042779:CDS 55.0%
TGTCGATGGCGAGGACTGAT+TGG + chr6.1:61361351-61361370 MS.gene042779:CDS 55.0%
! ATTTGCACCGGCACTGTCTC+CGG - chr6.1:61361192-61361211 None:intergenic 55.0%
!! GGGATCTCCATTGGTGTCGA+TGG + chr6.1:61361337-61361356 MS.gene042779:CDS 55.0%
!! GGTGTCGATGTTATCTCCGG+CGG - chr6.1:61360910-61360929 None:intergenic 55.0%
!! GTGGAAAGCGTTTCTACCGG+AGG + chr6.1:61361376-61361395 MS.gene042779:CDS 55.0%
!! TTTTGGAGGGGAGGAGAGGA+CGG + chr6.1:61361295-61361314 MS.gene042779:CDS 55.0%
!!! CGTTTTTTGGAGGGGAGGAG+AGG + chr6.1:61361291-61361310 MS.gene042779:CDS 55.0%
ACTACCACCGTCAGTTCCGC+CGG + chr6.1:61360891-61360910 MS.gene042779:CDS 60.0%
AGAGGACGGAGGCGGAGATT+AGG + chr6.1:61361309-61361328 MS.gene042779:CDS 60.0%
CACCAAAACCGCCACCCTTC+CGG + chr6.1:61360926-61360945 MS.gene042779:CDS 60.0%
CCTCCCCTCCAAAAAACGGC+TGG - chr6.1:61361289-61361308 None:intergenic 60.0%
GAGGCGGAGATTAGGCTCGA+GGG + chr6.1:61361317-61361336 MS.gene042779:CDS 60.0%
GAGGGATCGGATCGCGATCA+TGG + chr6.1:61361395-61361414 MS.gene042779:CDS 60.0%
GCGGAACTGACGGTGGTAGT+GGG - chr6.1:61360891-61360910 None:intergenic 60.0%
GTCCTCGCCATCGACACCAA+TGG - chr6.1:61361347-61361366 None:intergenic 60.0%
TGATCGCGATCCGATCCCTC+CGG - chr6.1:61361395-61361414 None:intergenic 60.0%
TGTATGTGGGCCGAATGCCG+AGG + chr6.1:61361427-61361446 MS.gene042779:CDS 60.0%
!! CTCCATTGGTGTCGATGGCG+AGG + chr6.1:61361342-61361361 MS.gene042779:CDS 60.0%
!!! CCAGCCGTTTTTTGGAGGGG+AGG + chr6.1:61361286-61361305 MS.gene042779:CDS 60.0%
AAGCGGGGCTCCGGGAAATC+CGG + chr6.1:61361243-61361262 MS.gene042779:CDS 65.0%
ACCGATGCTCCGGCGTGTGA+CGG - chr6.1:61361070-61361089 None:intergenic 65.0%
ACCGTCACACGCCGGAGCAT+CGG + chr6.1:61361066-61361085 MS.gene042779:CDS 65.0%
ATCTCCGGCGGAACTGACGG+TGG - chr6.1:61360898-61360917 None:intergenic 65.0%
GGAGGCGGAGATTAGGCTCG+AGG + chr6.1:61361316-61361335 MS.gene042779:CDS 65.0%
GGCGGAACTGACGGTGGTAG+TGG - chr6.1:61360892-61360911 None:intergenic 65.0%
GGGTTTGCAAAGCGGGGCTC+CGG + chr6.1:61361234-61361253 MS.gene042779:CDS 65.0%
GGTTTGCAAAGCGGGGCTCC+GGG + chr6.1:61361235-61361254 MS.gene042779:CDS 65.0%
TTCCTCGCCGGAGACAGTGC+CGG + chr6.1:61361182-61361201 MS.gene042779:CDS 65.0%
!! CACCGGAAGGGTGGCGGTTT+TGG - chr6.1:61360931-61360950 None:intergenic 65.0%
AGCGGGGCTCCGGGAAATCC+GGG + chr6.1:61361244-61361263 MS.gene042779:CDS 70.0%
AGGGGAGGAGAGGACGGAGG+CGG + chr6.1:61361301-61361320 MS.gene042779:CDS 70.0%
TGGAGGGGAGGAGAGGACGG+AGG + chr6.1:61361298-61361317 MS.gene042779:CDS 70.0%
CACCGGCACTGTCTCCGGCG+AGG - chr6.1:61361187-61361206 None:intergenic 75.0%


Chromosome Type Strat End Strand Name
chr6.1 gene 61360657 61361685 61360657 ID=MS.gene042779
chr6.1 mRNA 61360657 61361685 61360657 ID=MS.gene042779.t1;Parent=MS.gene042779
chr6.1 exon 61360657 61361685 61360657 ID=MS.gene042779.t1.exon1;Parent=MS.gene042779.t1
chr6.1 CDS 61360657 61361685 61360657 ID=cds.MS.gene042779.t1;Parent=MS.gene042779.t1
Gene Sequence

>MS.gene042779

ATGTCATCACCAAACAAACCCAAACCCGTACTCCCTTGGAAATCTCGCATTTCAATTTCATTCATAACTGCTTTAACAGACGCTTCACGTCGCTCTAACGGCACAGTTAACCGCCGTTTTCTTAATTTCTTAGATCGCAAATCTTCCCCTAACGCCATCCCTGTTAACGGCGTTTCCACCAAAGACGTTATCGTTAACGCCGAAAATAACGTTTGGTTCCGTCTCTTCACACCCACTACCACCGTCAGTTCCGCCGGAGATAACATCGACACCAAAACCGCCACCCTTCCGGTGATCATTTTCTTCCATGGAGGTGGATTTACCTATCTCACCCCTGATTCATTTGCTTATGACGCTGTTTGCCGGAGATTCTGCCGGAAAATTAACGCCGTTGTTGTCTCCGTTAACTACCGTCACACGCCGGAGCATCGGTATCCATCGCAATACGACGATGGAGAAGCTGTTTTGAAATATTTGGACGAGAATAAAACGGTTTTACCGGAAAATGCTGACGTGTCAAAATGTTTCCTCGCCGGAGACAGTGCCGGTGCAAATTTGGCACATCACGTTGCGGTTAGGGTTTGCAAAGCGGGGCTCCGGGAAATCCGGGTTATCGGGTTGGTATCGATCCAGCCGTTTTTTGGAGGGGAGGAGAGGACGGAGGCGGAGATTAGGCTCGAGGGATCTCCATTGGTGTCGATGGCGAGGACTGATTGGATGTGGAAAGCGTTTCTACCGGAGGGATCGGATCGCGATCATGGTGCGGTTAATGTATGTGGGCCGAATGCCGAGGATTTGTCAGGTTTGGATTACCCGGATACACTTGTTTTTATTGGTGGATTTGATCCTTTAAATGATTGGCAAAAGAGGTATTATGATTGGTTGAAAAAATATGGGAAAAAAGCTGAGTTGATTGAATATCCAACCATGATTCATGCTTTTTATATTTTTCCTGATTTGCCTGAATCTGGTCAGTTGATTATGCAAGTCAAGGATTTCATCAGCAAAGTGTCCAATTCTAGATTATGA
Protein sequence

>MS.gene042779.t1

MSSPNKPKPVLPWKSRISISFITALTDASRRSNGTVNRRFLNFLDRKSSPNAIPVNGVSTKDVIVNAENNVWFRLFTPTTTVSSAGDNIDTKTATLPVIIFFHGGGFTYLTPDSFAYDAVCRRFCRKINAVVVSVNYRHTPEHRYPSQYDDGEAVLKYLDENKTVLPENADVSKCFLAGDSAGANLAHHVAVRVCKAGLREIRVIGLVSIQPFFGGEERTEAEIRLEGSPLVSMARTDWMWKAFLPEGSDRDHGAVNVCGPNAEDLSGLDYPDTLVFIGGFDPLNDWQKRYYDWLKKYGKKAELIEYPTMIHAFYIFPDLPESGQLIMQVKDFISKVSNSRL