AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene005657

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene005657.t1 MTR_1g089310 98.837 344 4 0 1 344 17 360 0.0 710
MS.gene005657.t1 MTR_1g089310 98.837 344 4 0 1 344 1 344 0.0 709
MS.gene005657.t1 MTR_7g093950 84.286 350 49 4 1 344 1 350 0.0 610
MS.gene005657.t1 MTR_1g082210 71.884 345 95 2 1 344 1 344 0.0 528
MS.gene005657.t1 MTR_6g065400 39.233 339 197 3 7 341 1 334 4.30e-80 248
MS.gene005657.t1 MTR_6g065110 40.729 329 186 3 17 341 12 335 3.64e-78 243
MS.gene005657.t1 MTR_6g065370 38.393 336 198 3 10 341 4 334 9.36e-77 239
MS.gene005657.t1 MTR_6g065120 38.507 335 198 4 10 340 5 335 2.71e-76 238
MS.gene005657.t1 MTR_6g065270 36.607 336 208 3 9 340 1 335 3.51e-73 230
MS.gene005657.t1 MTR_6g065430 36.607 336 195 4 11 340 4 327 5.64e-68 216
MS.gene005657.t1 MTR_6g065340 35.398 339 191 5 10 341 12 329 1.69e-62 202
MS.gene005657.t1 MTR_4g050140 35.034 294 158 6 61 341 43 316 2.36e-44 155
MS.gene005657.t1 MTR_1g012430 34.328 268 154 6 92 340 43 307 6.40e-41 145
MS.gene005657.t1 MTR_3g012440 36.975 238 137 4 96 322 79 314 1.19e-40 145
MS.gene005657.t1 MTR_7g107040 36.957 230 130 4 105 321 69 296 8.69e-40 143
MS.gene005657.t1 MTR_1g111280 36.885 244 133 6 98 323 81 321 1.06e-39 143
MS.gene005657.t1 MTR_7g406880 33.564 289 156 8 61 325 54 330 6.72e-39 141
MS.gene005657.t1 MTR_1g102170 40.517 232 122 8 89 308 80 307 7.93e-38 138
MS.gene005657.t1 MTR_8g035540 33.217 286 150 9 37 301 13 278 2.17e-36 134
MS.gene005657.t1 MTR_6g464510 41.477 176 94 4 97 264 74 248 3.73e-36 133
MS.gene005657.t1 MTR_7g056207 33.103 290 162 10 69 344 82 353 1.55e-35 132
MS.gene005657.t1 MTR_4g086480 32.540 252 150 8 102 340 74 318 5.01e-35 130
MS.gene005657.t1 MTR_4g086510 35.200 250 143 7 105 341 75 318 1.49e-34 129
MS.gene005657.t1 MTR_6g464120 31.788 302 173 10 32 321 23 303 2.06e-34 132
MS.gene005657.t1 MTR_6g022710 34.749 259 128 5 105 323 160 417 3.29e-34 130
MS.gene005657.t1 MTR_3g450680 32.441 299 162 9 70 341 47 332 4.84e-34 128
MS.gene005657.t1 MTR_0007s0520 37.037 189 108 4 87 265 59 246 1.92e-33 126
MS.gene005657.t1 MTR_6g464320 35.345 232 138 5 103 323 79 309 2.29e-33 126
MS.gene005657.t1 MTR_1g102160 36.979 192 109 3 84 264 57 247 5.81e-33 125
MS.gene005657.t1 MTR_6g464280 37.156 218 123 6 103 308 78 293 9.26e-33 124
MS.gene005657.t1 MTR_3g101420 29.677 310 173 9 38 334 20 297 1.96e-32 123
MS.gene005657.t1 MTR_4g086470 31.727 249 150 7 105 340 76 317 4.70e-32 122
MS.gene005657.t1 MTR_8g035520 32.636 239 135 7 100 321 74 303 1.15e-30 119
MS.gene005657.t1 MTR_5g005920 30.816 331 182 13 25 334 9 313 1.32e-30 119
MS.gene005657.t1 MTR_8g035500 30.128 312 180 11 25 321 8 296 6.75e-30 116
MS.gene005657.t1 MTR_8g040860 30.970 268 163 7 70 322 47 307 1.06e-29 116
MS.gene005657.t1 MTR_1g105020 30.169 295 168 8 38 314 21 295 9.57e-29 113
MS.gene005657.t1 MTR_7g051020 34.351 262 146 8 100 341 71 326 4.64e-28 112
MS.gene005657.t1 MTR_5g005900 30.870 230 135 7 95 305 64 288 2.85e-27 109
MS.gene005657.t1 MTR_4g086540 29.670 273 148 8 38 304 31 265 3.33e-27 109
MS.gene005657.t1 MTR_1g104933 33.588 262 148 7 98 341 64 317 2.14e-26 107
MS.gene005657.t1 MTR_5g005850 27.914 326 189 11 38 340 26 328 1.84e-25 104
MS.gene005657.t1 MTR_1g104930 32.707 266 149 8 98 341 66 323 1.07e-23 100
MS.gene005657.t1 MTR_0007s0480 38.202 89 48 1 184 265 4 92 7.34e-13 66.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene005657.t1 AT3G63010 78.363 342 73 1 1 341 1 342 0.0 579
MS.gene005657.t1 AT5G27320 72.464 345 92 3 1 344 1 343 0.0 522
MS.gene005657.t1 AT3G05120 69.942 346 101 3 1 344 1 345 0.0 509
MS.gene005657.t1 AT5G23530 36.000 350 190 7 1 340 1 326 9.07e-65 208
MS.gene005657.t1 AT5G16080 36.742 264 141 7 100 343 87 344 1.30e-46 161
MS.gene005657.t1 AT1G68620 34.843 287 152 11 69 341 65 330 8.09e-45 157
MS.gene005657.t1 AT5G06570 37.959 245 135 6 93 321 62 305 1.39e-37 137
MS.gene005657.t1 AT5G06570 37.959 245 135 6 93 321 62 305 1.39e-37 137
MS.gene005657.t1 AT5G06570 37.959 245 135 6 93 321 77 320 2.61e-37 137
MS.gene005657.t1 AT5G06570 37.959 245 135 6 93 321 77 320 2.61e-37 137
MS.gene005657.t1 AT1G47480 30.284 317 191 9 33 341 16 310 2.66e-36 134
MS.gene005657.t1 AT5G14310 35.094 265 124 7 105 323 151 413 1.49e-35 134
MS.gene005657.t1 AT2G45600 33.992 253 144 7 84 316 43 292 1.86e-35 132
MS.gene005657.t1 AT5G62180 32.365 241 145 6 32 264 15 245 3.32e-35 131
MS.gene005657.t1 AT1G19190 35.461 282 139 11 53 315 30 287 4.48e-35 130
MS.gene005657.t1 AT2G45610 34.940 249 145 7 105 340 79 323 3.15e-32 123
MS.gene005657.t1 AT3G48700 33.544 316 168 13 50 340 27 325 8.33e-32 122
MS.gene005657.t1 AT3G48690 33.451 284 150 10 39 304 19 281 1.51e-31 121
MS.gene005657.t1 AT2G03550 31.153 321 175 13 39 341 19 311 4.40e-31 119
MS.gene005657.t1 AT3G27320 33.962 265 126 8 105 323 134 395 3.06e-30 119
MS.gene005657.t1 AT3G27320 33.962 265 126 8 105 323 166 427 3.61e-30 120
MS.gene005657.t1 AT1G49650 31.298 262 156 7 53 304 86 333 8.08e-27 109
MS.gene005657.t1 AT1G49640 32.039 206 129 7 105 304 74 274 5.64e-26 106
MS.gene005657.t1 AT1G49660 28.947 266 169 7 49 303 21 277 3.78e-24 101

Find 94 sgRNAs with CRISPR-Local

Find 144 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGACATCTTGGTTAGATTTC+TGG 0.175894 1.2:-67064881 None:intergenic
ATGGTTGGAATGCTCTAAAT+TGG 0.260815 1.2:+67064457 MS.gene005657:CDS
GATCATGTCGATAGAAATTC+AGG 0.292227 1.2:+67064177 MS.gene005657:CDS
TTGTTACCTTAGATTCATTA+AGG 0.302473 1.2:-67063283 None:intergenic
CCTTGTTTGTGTGGCTGGTT+TGG 0.311025 1.2:+67064818 MS.gene005657:CDS
GGTAAAGAAGTTTGACATCT+TGG 0.317354 1.2:-67064893 None:intergenic
ATTCTTCTCCATCCACTCTT+TGG 0.317740 1.2:+67064618 MS.gene005657:CDS
AACCAATAGTGGCTTCCTTT+AGG 0.329579 1.2:-67064914 None:intergenic
ATTGGGTCAAATCAAGGATA+TGG 0.339743 1.2:+67064475 MS.gene005657:CDS
AAAAGCCTTGTTTGTGTGGC+TGG 0.339972 1.2:+67064813 MS.gene005657:CDS
ATTGTAAGCAAGCTTGAAAT+TGG 0.347441 1.2:-67064052 None:intergenic
CAATAGAAATGATCATTATT+AGG 0.355983 1.2:-67064948 None:intergenic
TACCTAAAGGAAGCCACTAT+TGG 0.357783 1.2:+67064912 MS.gene005657:CDS
GCCAATACAATTCCTGTAGA+TGG 0.359532 1.2:+67064141 MS.gene005657:CDS
AGTCAACCTTAATGAATCTA+AGG 0.367754 1.2:+67063277 MS.gene005657:CDS
TGATCTCTATCTTCCCCTTC+AGG 0.371490 1.2:-67064732 None:intergenic
GTTTGGATCTTCTACAAGAT+TGG 0.373570 1.2:+67064835 MS.gene005657:CDS
TTCTCCATCCACTCTTTGGT+GGG 0.385254 1.2:+67064622 MS.gene005657:CDS
TGCAAGATCGTGATTGGTAT+TGG 0.387188 1.2:+67064697 MS.gene005657:CDS
AACAGAATCGGAGAAGAAAC+TGG 0.395775 1.2:+67064653 MS.gene005657:CDS
CCTAAAGGTAAAAGCCTTGT+AGG 0.397562 1.2:+67064777 MS.gene005657:CDS
CTCCAAGGTTTATGCTTACA+TGG 0.407235 1.2:+67064515 MS.gene005657:CDS
CTCCAGAGAATGTTACTACT+TGG 0.411618 1.2:+67064226 MS.gene005657:CDS
CTTCTCCATCCACTCTTTGG+TGG 0.413791 1.2:+67064621 MS.gene005657:CDS
GTGTTGTTCCTCTCAATACT+TGG 0.417333 1.2:+67064019 MS.gene005657:CDS
CATCCTGCTTGTAATCCATT+TGG 0.419839 1.2:+67064753 MS.gene005657:CDS
CCCCAAGTAGTAACATTCTC+TGG 0.421392 1.2:-67064228 None:intergenic
TGTAATCCATTTGGTCCTAA+AGG 0.430276 1.2:+67064762 MS.gene005657:CDS
CTCTAAATTGGGTCAAATCA+AGG 0.442412 1.2:+67064469 MS.gene005657:CDS
AAGGTTTATGCTTACATGGC+TGG 0.447846 1.2:+67064519 MS.gene005657:CDS
TATCCGTGTGCTTACGAAGA+TGG 0.455575 1.2:+67064438 MS.gene005657:CDS
TACATGGCTGGTGATAGTTC+CGG 0.457192 1.2:+67064531 MS.gene005657:CDS
TGTCAAACTTCTTTACCTAA+AGG 0.457617 1.2:+67064899 MS.gene005657:CDS
CCCTAAAAGCCTTGTTTGTG+TGG 0.460173 1.2:+67064809 MS.gene005657:CDS
TTGTTGTTTCTGTAAACTAC+AGG 0.460275 1.2:+67064397 MS.gene005657:CDS
TCTTCTACAAGATTGGCAAT+TGG 0.460325 1.2:+67064842 MS.gene005657:CDS
GACAATCTCTGTTGTGCTCA+AGG 0.461484 1.2:-67064271 None:intergenic
TCTACAGGAATTGTATTGGC+TGG 0.475234 1.2:-67064138 None:intergenic
TGAGGTTGCAAGATCGTGAT+TGG 0.487767 1.2:+67064691 MS.gene005657:CDS
TCCATCTACAGGAATTGTAT+TGG 0.489416 1.2:-67064142 None:intergenic
TCTCCATCCACTCTTTGGTG+GGG 0.492850 1.2:+67064623 MS.gene005657:CDS
GAGGAAGATGTTGAGGTACT+AGG 0.496473 1.2:+67064591 MS.gene005657:CDS
AAAGAGAATACTCCATCTAC+AGG 0.500048 1.2:-67064153 None:intergenic
AACATAGACATAAACATGGC+TGG 0.504836 1.2:+67063245 None:intergenic
TGGTTGGAATGCTCTAAATT+GGG 0.506865 1.2:+67064458 MS.gene005657:CDS
GTAGTAACATTCTCTGGAGC+AGG 0.509928 1.2:-67064222 None:intergenic
TCGCCTTGTGAGCATGTGTA+AGG 0.514102 1.2:+67064371 MS.gene005657:CDS
TCCAGAGAATGTTACTACTT+GGG 0.521238 1.2:+67064227 MS.gene005657:CDS
TAGGGAACTTGAGTCCTACA+AGG 0.521873 1.2:-67064791 None:intergenic
TGGGGAGAAGCGAACAGAAT+CGG 0.526899 1.2:+67064641 MS.gene005657:CDS
GGACCAAATGGATTACAAGC+AGG 0.530885 1.2:-67064756 None:intergenic
AGATTGGCAATTGGAATATG+TGG 0.530969 1.2:+67064851 MS.gene005657:CDS
CCTGTCATAATCTTCTTCCA+TGG 0.533405 1.2:+67064294 MS.gene005657:CDS
CTACAGGAATTGTATTGGCT+GGG 0.533816 1.2:-67064137 None:intergenic
TGGAAGTTTCTCTCATTCCT+CGG 0.536571 1.2:+67064317 MS.gene005657:CDS
TGTTGTTCCTCTCAATACTT+GGG 0.536632 1.2:+67064020 MS.gene005657:CDS
GTAGCAGTATATCAGCAGTT+AGG 0.539039 1.2:-67065002 None:intergenic
AATCTACTAAGACGCGCTGA+TGG 0.544855 1.2:+67064072 MS.gene005657:CDS
CGTGTGCTTACGAAGATGGT+TGG 0.544969 1.2:+67064442 MS.gene005657:CDS
AGAAATGATCATTATTAGGA+AGG 0.548626 1.2:-67064944 None:intergenic
CCAGAGAATGTTACTACTTG+GGG 0.553071 1.2:+67064228 MS.gene005657:CDS
CAGCCTTACACATGCTCACA+AGG 0.557141 1.2:-67064374 None:intergenic
CCATGGAAGAAGATTATGAC+AGG 0.559426 1.2:-67064294 None:intergenic
GCACACGGATACCGATGCTC+GGG 0.559770 1.2:-67064426 None:intergenic
CGTTGCGGTGAGAGCTGCCG+AGG 0.561498 1.2:+67064572 MS.gene005657:CDS
GTGATGAGCAATGTTGCCTC+CGG 0.563388 1.2:-67064550 None:intergenic
ACAATCTCTGTTGTGCTCAA+GGG 0.564360 1.2:-67064270 None:intergenic
AGCTGAGTTTCTTGACCGCA+AGG 0.568671 1.2:+67064113 MS.gene005657:CDS
AGCACACGGATACCGATGCT+CGG 0.568740 1.2:-67064427 None:intergenic
TAGTACCTCAACATCTTCCT+CGG 0.571640 1.2:-67064589 None:intergenic
AAGGAAGTAGAAACCAATAG+TGG 0.572842 1.2:-67064925 None:intergenic
TCTCCCCACCAAAGAGTGGA+TGG 0.573660 1.2:-67064626 None:intergenic
AGCTGCCGAGGAAGATGTTG+AGG 0.574921 1.2:+67064584 MS.gene005657:CDS
GAATCGGAGAAGAAACTGGA+TGG 0.579411 1.2:+67064657 MS.gene005657:CDS
CGCTTCTCCCCACCAAAGAG+TGG 0.583817 1.2:-67064630 None:intergenic
TTGTATTGGCTGGGACCTTG+CGG 0.585043 1.2:-67064128 None:intergenic
ACAGGAGATCACCCGAGCAT+CGG 0.608623 1.2:+67064415 MS.gene005657:CDS
CCAAACCAGCCACACAAACA+AGG 0.618481 1.2:-67064818 None:intergenic
TCAAAGTGGAAAGGACTCCA+AGG 0.619865 1.2:+67064500 MS.gene005657:CDS
AGCCATGTAAGCATAAACCT+TGG 0.620826 1.2:-67064517 None:intergenic
TGGCAATTGGAATATGTGGA+AGG 0.626681 1.2:+67064855 MS.gene005657:CDS
GTCATAATCTTCTTCCATGG+TGG 0.626745 1.2:+67064297 MS.gene005657:CDS
AGGTGTTTATCTCATTCATG+AGG 0.628766 1.2:-67064971 None:intergenic
TCAAGGATATGGCTTCAAAG+TGG 0.630695 1.2:+67064486 MS.gene005657:CDS
CAACCATCTTCGTAAGCACA+CGG 0.632894 1.2:-67064441 None:intergenic
GATATGGCTTCAAAGTGGAA+AGG 0.639590 1.2:+67064491 MS.gene005657:CDS
ATAGATAGCACTATTAGCCG+AGG 0.651389 1.2:-67064334 None:intergenic
ATGGCTGGTGATAGTTCCGG+AGG 0.657964 1.2:+67064534 MS.gene005657:CDS
TACACATGCTCACAAGGCGA+CGG 0.659131 1.2:-67064368 None:intergenic
CAACATTGCTCATCACGTTG+CGG 0.669625 1.2:+67064557 MS.gene005657:CDS
ATAAGCACCCAAGTATTGAG+AGG 0.671972 1.2:-67064027 None:intergenic
AATGAGAGAAACTTCCACCA+TGG 0.679061 1.2:-67064311 None:intergenic
CATGGAAGAAGATTATGACA+GGG 0.698543 1.2:-67064293 None:intergenic
TCAGCAGTTAGGATGCACAA+AGG 0.736695 1.2:-67064991 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTCTAAAAACAAATAAAAGA+AGG - chr1.2:67063378-67063397 None:intergenic 15.0%
!! CAATAGAAATGATCATTATT+AGG - chr1.2:67064951-67064970 None:intergenic 20.0%
!!! ACAACTTTCTTTGTTTTTTT+TGG + chr1.2:67063302-67063321 MS.gene005657:intron 20.0%
!!! ATAATTTCTTGCTTTTCTAA+AGG + chr1.2:67063775-67063794 MS.gene005657:intron 20.0%
!!! TAATTTCTTGCTTTTCTAAA+GGG + chr1.2:67063776-67063795 MS.gene005657:intron 20.0%
!!! TTCTATTTTTTCTTACATGT+AGG + chr1.2:67063614-67063633 MS.gene005657:intron 20.0%
!!! TTTTTTGTGTTTTTGATGTT+GGG + chr1.2:67063404-67063423 MS.gene005657:intron 20.0%
!!! TTTTTTTGTGTTTTTGATGT+TGG + chr1.2:67063403-67063422 MS.gene005657:intron 20.0%
! AATGAAGTGCATAATTCATA+CGG + chr1.2:67063856-67063875 MS.gene005657:intron 25.0%
! AGAAATGATCATTATTAGGA+AGG - chr1.2:67064947-67064966 None:intergenic 25.0%
! GCAAGAAATTATTGAAAAGA+AGG - chr1.2:67063767-67063786 None:intergenic 25.0%
! TGAAAAGAAGGATCATAAAA+AGG - chr1.2:67063755-67063774 None:intergenic 25.0%
! TTGTTACCTTAGATTCATTA+AGG - chr1.2:67063286-67063305 None:intergenic 25.0%
! TTTGAATCTTTAACATCGAT+TGG + chr1.2:67063449-67063468 MS.gene005657:intron 25.0%
!! AAATTCAGGACTTTTCAATA+GGG + chr1.2:67064191-67064210 MS.gene005657:CDS 25.0%
!! TTGAATCTTTAACATCGATT+GGG + chr1.2:67063450-67063469 MS.gene005657:intron 25.0%
!!! TGTTTTTGTTATCCTTTTCT+GGG + chr1.2:67063527-67063546 MS.gene005657:intron 25.0%
!!! TTGTTTTTGTTATCCTTTTC+TGG + chr1.2:67063526-67063545 MS.gene005657:intron 25.0%
AGTCAACCTTAATGAATCTA+AGG + chr1.2:67063277-67063296 MS.gene005657:CDS 30.0%
ATTGTAAGCAAGCTTGAAAT+TGG - chr1.2:67064055-67064074 None:intergenic 30.0%
CATCAACTATGCATTTCATT+TGG - chr1.2:67063961-67063980 None:intergenic 30.0%
TGTCAAACTTCTTTACCTAA+AGG + chr1.2:67064899-67064918 MS.gene005657:CDS 30.0%
TTATCAACAAAACCCAGAAA+AGG - chr1.2:67063542-67063561 None:intergenic 30.0%
! AATGAAATGCATAGTTGATG+TGG + chr1.2:67063961-67063980 MS.gene005657:intron 30.0%
! GAAATTCAGGACTTTTCAAT+AGG + chr1.2:67064190-67064209 MS.gene005657:CDS 30.0%
! GGATCATAAAAAGGAAGTAT+AGG - chr1.2:67063746-67063765 None:intergenic 30.0%
!! TTGTTGTTTCTGTAAACTAC+AGG + chr1.2:67064397-67064416 MS.gene005657:CDS 30.0%
AAAGAGAATACTCCATCTAC+AGG - chr1.2:67064156-67064175 None:intergenic 35.0%
AAGGAAGTAGAAACCAATAG+TGG - chr1.2:67064928-67064947 None:intergenic 35.0%
ACAAACCCCAAAAACTACAT+AGG - chr1.2:67063573-67063592 None:intergenic 35.0%
ACCTTTCTCAAAGATTTGTG+AGG + chr1.2:67063710-67063729 MS.gene005657:intron 35.0%
AGATTGGCAATTGGAATATG+TGG + chr1.2:67064851-67064870 MS.gene005657:CDS 35.0%
AGGTGTTTATCTCATTCATG+AGG - chr1.2:67064974-67064993 None:intergenic 35.0%
ATTGGGTCAAATCAAGGATA+TGG + chr1.2:67064475-67064494 MS.gene005657:CDS 35.0%
CAAACCCCAAAAACTACATA+GGG - chr1.2:67063572-67063591 None:intergenic 35.0%
CATGGAAGAAGATTATGACA+GGG - chr1.2:67064296-67064315 None:intergenic 35.0%
CTCTAAATTGGGTCAAATCA+AGG + chr1.2:67064469-67064488 MS.gene005657:CDS 35.0%
GATCATGTCGATAGAAATTC+AGG + chr1.2:67064177-67064196 MS.gene005657:CDS 35.0%
GGAAGGATTGCATATTTGTT+GGG + chr1.2:67063471-67063490 MS.gene005657:intron 35.0%
GGTAAAGAAGTTTGACATCT+TGG - chr1.2:67064896-67064915 None:intergenic 35.0%
GTGCATAATTCATACGGATA+AGG + chr1.2:67063862-67063881 MS.gene005657:intron 35.0%
GTTTACTTGTTCTGGTAAGT+TGG + chr1.2:67063644-67063663 MS.gene005657:intron 35.0%
GTTTGGATCTTCTACAAGAT+TGG + chr1.2:67064835-67064854 MS.gene005657:CDS 35.0%
TCCAGAGAATGTTACTACTT+GGG + chr1.2:67064227-67064246 MS.gene005657:CDS 35.0%
TCCATCTACAGGAATTGTAT+TGG - chr1.2:67064145-67064164 None:intergenic 35.0%
TCTTCTACAAGATTGGCAAT+TGG + chr1.2:67064842-67064861 MS.gene005657:CDS 35.0%
TGACATCTTGGTTAGATTTC+TGG - chr1.2:67064884-67064903 None:intergenic 35.0%
TGTAATCCATTTGGTCCTAA+AGG + chr1.2:67064762-67064781 MS.gene005657:CDS 35.0%
TGTTGTTCCTCTCAATACTT+GGG + chr1.2:67064020-67064039 MS.gene005657:CDS 35.0%
! ACCTCACAAATCTTTGAGAA+AGG - chr1.2:67063714-67063733 None:intergenic 35.0%
! ATCTTTAACATCGATTGGGA+AGG + chr1.2:67063454-67063473 MS.gene005657:intron 35.0%
! ATGGTCCCTATGTAGTTTTT+GGG + chr1.2:67063564-67063583 MS.gene005657:intron 35.0%
! ATGGTTGGAATGCTCTAAAT+TGG + chr1.2:67064457-67064476 MS.gene005657:CDS 35.0%
! CACAAATCTTTGAGAAAGGT+GGG - chr1.2:67063710-67063729 None:intergenic 35.0%
! TCACAAATCTTTGAGAAAGG+TGG - chr1.2:67063711-67063730 None:intergenic 35.0%
! TGGTTGGAATGCTCTAAATT+GGG + chr1.2:67064458-67064477 MS.gene005657:CDS 35.0%
!! GTGTTTTTGATGTTGGGTTT+TGG + chr1.2:67063410-67063429 MS.gene005657:intron 35.0%
!!! CTGGGTTTTGTTGATAATGA+TGG + chr1.2:67063545-67063564 MS.gene005657:intron 35.0%
!!! CTTTTACCTTTAGGACCAAA+TGG - chr1.2:67064771-67064790 None:intergenic 35.0%
!!! TGGATGGAAAGTATTTTGTG+AGG + chr1.2:67064673-67064692 MS.gene005657:CDS 35.0%
AACAGAATCGGAGAAGAAAC+TGG + chr1.2:67064653-67064672 MS.gene005657:CDS 40.0%
AACCAATAGTGGCTTCCTTT+AGG - chr1.2:67064917-67064936 None:intergenic 40.0%
AAGGTTTATGCTTACATGGC+TGG + chr1.2:67064519-67064538 MS.gene005657:CDS 40.0%
AATGAGAGAAACTTCCACCA+TGG - chr1.2:67064314-67064333 None:intergenic 40.0%
ACAATCTCTGTTGTGCTCAA+GGG - chr1.2:67064273-67064292 None:intergenic 40.0%
ACCAGAACAAGTAAACCAAG+AGG - chr1.2:67063640-67063659 None:intergenic 40.0%
AGCCATGTAAGCATAAACCT+TGG - chr1.2:67064520-67064539 None:intergenic 40.0%
ATAGATAGCACTATTAGCCG+AGG - chr1.2:67064337-67064356 None:intergenic 40.0%
ATTCTTCTCCATCCACTCTT+TGG + chr1.2:67064618-67064637 MS.gene005657:CDS 40.0%
CATCCTGCTTGTAATCCATT+TGG + chr1.2:67064753-67064772 MS.gene005657:CDS 40.0%
CCAGAGAATGTTACTACTTG+GGG + chr1.2:67064228-67064247 MS.gene005657:CDS 40.0%
CCATGGAAGAAGATTATGAC+AGG - chr1.2:67064297-67064316 None:intergenic 40.0%
CCTGTCATAATCTTCTTCCA+TGG + chr1.2:67064294-67064313 MS.gene005657:CDS 40.0%
CTCCAAGGTTTATGCTTACA+TGG + chr1.2:67064515-67064534 MS.gene005657:CDS 40.0%
CTCCAGAGAATGTTACTACT+TGG + chr1.2:67064226-67064245 MS.gene005657:CDS 40.0%
GATATGGCTTCAAAGTGGAA+AGG + chr1.2:67064491-67064510 MS.gene005657:CDS 40.0%
GCCAATACAATTCCTGTAGA+TGG + chr1.2:67064141-67064160 MS.gene005657:CDS 40.0%
GGGAAGGATTGCATATTTGT+TGG + chr1.2:67063470-67063489 MS.gene005657:intron 40.0%
GTCATAATCTTCTTCCATGG+TGG + chr1.2:67064297-67064316 MS.gene005657:CDS 40.0%
TACCTAAAGGAAGCCACTAT+TGG + chr1.2:67064912-67064931 MS.gene005657:CDS 40.0%
TAGTACCTCAACATCTTCCT+CGG - chr1.2:67064592-67064611 None:intergenic 40.0%
TCAAGGATATGGCTTCAAAG+TGG + chr1.2:67064486-67064505 MS.gene005657:CDS 40.0%
TGCAAGATCGTGATTGGTAT+TGG + chr1.2:67064697-67064716 MS.gene005657:CDS 40.0%
TGGAAGTTTCTCTCATTCCT+CGG + chr1.2:67064317-67064336 MS.gene005657:CDS 40.0%
TGGCAATTGGAATATGTGGA+AGG + chr1.2:67064855-67064874 MS.gene005657:CDS 40.0%
TTTCTTACATGTAGGCCTCT+TGG + chr1.2:67063622-67063641 MS.gene005657:intron 40.0%
! AATGCATAGTTGATGTGGAC+AGG + chr1.2:67063966-67063985 MS.gene005657:intron 40.0%
! ATGCATAGTTGATGTGGACA+GGG + chr1.2:67063967-67063986 MS.gene005657:intron 40.0%
! CCACACAAACAAGGCTTTTA+GGG - chr1.2:67064812-67064831 None:intergenic 40.0%
! CCTAAAGGTAAAAGCCTTGT+AGG + chr1.2:67064777-67064796 MS.gene005657:CDS 40.0%
! CCTACAAGGCTTTTACCTTT+AGG - chr1.2:67064780-67064799 None:intergenic 40.0%
! GATGGTCCCTATGTAGTTTT+TGG + chr1.2:67063563-67063582 MS.gene005657:intron 40.0%
! GTGTTGTTCCTCTCAATACT+TGG + chr1.2:67064019-67064038 MS.gene005657:CDS 40.0%
! TCTACAGGAATTGTATTGGC+TGG - chr1.2:67064141-67064160 None:intergenic 40.0%
! TGGTCCCTATGTAGTTTTTG+GGG + chr1.2:67063565-67063584 MS.gene005657:intron 40.0%
!! ATAAGCACCCAAGTATTGAG+AGG - chr1.2:67064030-67064049 None:intergenic 40.0%
!! CTACAGGAATTGTATTGGCT+GGG - chr1.2:67064140-67064159 None:intergenic 40.0%
!! GGTGGGCAATTTTTCAACTT+TGG - chr1.2:67063693-67063712 None:intergenic 40.0%
!!! GTTGGGTTTTGGTGTTGAAA+GGG + chr1.2:67063421-67063440 MS.gene005657:intron 40.0%
!!! TGTTGGGTTTTGGTGTTGAA+AGG + chr1.2:67063420-67063439 MS.gene005657:intron 40.0%
AATCTACTAAGACGCGCTGA+TGG + chr1.2:67064072-67064091 MS.gene005657:CDS 45.0%
CAACATTGCTCATCACGTTG+CGG + chr1.2:67064557-67064576 MS.gene005657:CDS 45.0%
CAACCATCTTCGTAAGCACA+CGG - chr1.2:67064444-67064463 None:intergenic 45.0%
CCCCAAGTAGTAACATTCTC+TGG - chr1.2:67064231-67064250 None:intergenic 45.0%
GAATCGGAGAAGAAACTGGA+TGG + chr1.2:67064657-67064676 MS.gene005657:CDS 45.0%
GACAATCTCTGTTGTGCTCA+AGG - chr1.2:67064274-67064293 None:intergenic 45.0%
GCCTCTTGGTTTACTTGTTC+TGG + chr1.2:67063636-67063655 MS.gene005657:intron 45.0%
TACATGGCTGGTGATAGTTC+CGG + chr1.2:67064531-67064550 MS.gene005657:CDS 45.0%
TAGGGAACTTGAGTCCTACA+AGG - chr1.2:67064794-67064813 None:intergenic 45.0%
TATCCGTGTGCTTACGAAGA+TGG + chr1.2:67064438-67064457 MS.gene005657:CDS 45.0%
TCAAAGTGGAAAGGACTCCA+AGG + chr1.2:67064500-67064519 MS.gene005657:CDS 45.0%
TCAGCAGTTAGGATGCACAA+AGG - chr1.2:67064994-67065013 None:intergenic 45.0%
TGAGGTTGCAAGATCGTGAT+TGG + chr1.2:67064691-67064710 MS.gene005657:CDS 45.0%
TGATCTCTATCTTCCCCTTC+AGG - chr1.2:67064735-67064754 None:intergenic 45.0%
TTCTCCATCCACTCTTTGGT+GGG + chr1.2:67064622-67064641 MS.gene005657:CDS 45.0%
! GAGGAAGATGTTGAGGTACT+AGG + chr1.2:67064591-67064610 MS.gene005657:CDS 45.0%
! GCCACACAAACAAGGCTTTT+AGG - chr1.2:67064813-67064832 None:intergenic 45.0%
!! AAAAGCCTTGTTTGTGTGGC+TGG + chr1.2:67064813-67064832 MS.gene005657:CDS 45.0%
!! CCCTAAAAGCCTTGTTTGTG+TGG + chr1.2:67064809-67064828 MS.gene005657:CDS 45.0%
!! GGACCAAATGGATTACAAGC+AGG - chr1.2:67064759-67064778 None:intergenic 45.0%
!! GTAGTAACATTCTCTGGAGC+AGG - chr1.2:67064225-67064244 None:intergenic 45.0%
AGCTGAGTTTCTTGACCGCA+AGG + chr1.2:67064113-67064132 MS.gene005657:CDS 50.0%
CAGCCTTACACATGCTCACA+AGG - chr1.2:67064377-67064396 None:intergenic 50.0%
CCAAACCAGCCACACAAACA+AGG - chr1.2:67064821-67064840 None:intergenic 50.0%
CGTGTGCTTACGAAGATGGT+TGG + chr1.2:67064442-67064461 MS.gene005657:CDS 50.0%
CTTCTCCATCCACTCTTTGG+TGG + chr1.2:67064621-67064640 MS.gene005657:CDS 50.0%
GTGATGAGCAATGTTGCCTC+CGG - chr1.2:67064553-67064572 None:intergenic 50.0%
TACACATGCTCACAAGGCGA+CGG - chr1.2:67064371-67064390 None:intergenic 50.0%
TCGCCTTGTGAGCATGTGTA+AGG + chr1.2:67064371-67064390 MS.gene005657:CDS 50.0%
TCTCCATCCACTCTTTGGTG+GGG + chr1.2:67064623-67064642 MS.gene005657:CDS 50.0%
TGGGGAGAAGCGAACAGAAT+CGG + chr1.2:67064641-67064660 MS.gene005657:CDS 50.0%
! CCTTGTTTGTGTGGCTGGTT+TGG + chr1.2:67064818-67064837 MS.gene005657:CDS 50.0%
! GCGAGCTTTTCTACCTGAAG+GGG + chr1.2:67064719-67064738 MS.gene005657:CDS 50.0%
! GGCGAGCTTTTCTACCTGAA+GGG + chr1.2:67064718-67064737 MS.gene005657:CDS 50.0%
! TGGCGAGCTTTTCTACCTGA+AGG + chr1.2:67064717-67064736 MS.gene005657:CDS 50.0%
!! TTGTATTGGCTGGGACCTTG+CGG - chr1.2:67064131-67064150 None:intergenic 50.0%
ACAGGAGATCACCCGAGCAT+CGG + chr1.2:67064415-67064434 MS.gene005657:CDS 55.0%
AGCACACGGATACCGATGCT+CGG - chr1.2:67064430-67064449 None:intergenic 55.0%
AGCTGCCGAGGAAGATGTTG+AGG + chr1.2:67064584-67064603 MS.gene005657:CDS 55.0%
ATGGCTGGTGATAGTTCCGG+AGG + chr1.2:67064534-67064553 MS.gene005657:CDS 55.0%
TCTCCCCACCAAAGAGTGGA+TGG - chr1.2:67064629-67064648 None:intergenic 55.0%
CGCTTCTCCCCACCAAAGAG+TGG - chr1.2:67064633-67064652 None:intergenic 60.0%
GCACACGGATACCGATGCTC+GGG - chr1.2:67064429-67064448 None:intergenic 60.0%
CGTTGCGGTGAGAGCTGCCG+AGG + chr1.2:67064572-67064591 MS.gene005657:CDS 70.0%


Chromosome Type Strat End Strand Name
chr1.2 gene 67063260 67065013 67063260 ID=MS.gene005657
chr1.2 mRNA 67063260 67065013 67063260 ID=MS.gene005657.t1;Parent=MS.gene005657
chr1.2 exon 67063260 67063298 67063260 ID=MS.gene005657.t1.exon1;Parent=MS.gene005657.t1
chr1.2 CDS 67063260 67063298 67063260 ID=cds.MS.gene005657.t1;Parent=MS.gene005657.t1
chr1.2 exon 67064018 67065013 67064018 ID=MS.gene005657.t1.exon2;Parent=MS.gene005657.t1
chr1.2 CDS 67064018 67065013 67064018 ID=cds.MS.gene005657.t1;Parent=MS.gene005657.t1
Gene Sequence

>MS.gene005657

ATGGCTGGAAGTAATGAAGTCAACCTTAATGAATCTAAGGTAACAACTTTCTTTGTTTTTTTTGGTCTTTTTCTTCTTATTTTATTTGATTTTAGCATTGTTTATTCTGCGTGTTCCTTCTTTTATTTGTTTTTAGAAGTGATTTTTTTTGTGTTTTTGATGTTGGGTTTTGGTGTTGAAAGGGAAAAGTTTGAATCTTTAACATCGATTGGGAAGGATTGCATATTTGTTGGGAACATTTTTGAGTTAAAGAGAGTGTTGTTTCTTTGTTTTTGTTATCCTTTTCTGGGTTTTGTTGATAATGATGGTCCCTATGTAGTTTTTGGGGTTTGTTTCAATTTTTTGTTTTGTACTTTCTATTTTTTCTTACATGTAGGCCTCTTGGTTTACTTGTTCTGGTAAGTTGGTAAGTTTCTGTTTGATTTACTCTCCAAAGTTGAAAAATTGCCCACCTTTCTCAAAGATTTGTGAGGTTCTTTCACGCCTATACTTCCTTTTTATGATCCTTCTTTTCAATAATTTCTTGCTTTTCTAAAGGGATGAGCTTTGATTAGATGATTTTATTCTTCTTTTGAAGTATTAGTACTATAGTGTCAAATGAAGTGCATAATTCATACGGATAAGGTTCTAATAACATAGTTCATATGCATAAGCTTTGATTAGAGAATATTTTTTCTTTCTTGTTAAGTACTATTGTGCCAAATGAAATGCATAGTTGATGTGGACAGGGTTCTAATAACATGTTACAATCTTTGTAGAGTGTTGTTCCTCTCAATACTTGGGTGCTTATCTCCAATTTCAAGCTTGCTTACAATCTACTAAGACGCGCTGATGGAACATTCAATAGAGAGTTAGCTGAGTTTCTTGACCGCAAGGTCCCAGCCAATACAATTCCTGTAGATGGAGTATTCTCTTTCGATCATGTCGATAGAAATTCAGGACTTTTCAATAGGGTTTATCAACCTGCTCCAGAGAATGTTACTACTTGGGGAATTATAGAGCTAGAAAAGCCCTTGAGCACAACAGAGATTGTCCCTGTCATAATCTTCTTCCATGGTGGAAGTTTCTCTCATTCCTCGGCTAATAGTGCTATCTATGACACTTTCTGCCGTCGCCTTGTGAGCATGTGTAAGGCTGTTGTTGTTTCTGTAAACTACAGGAGATCACCCGAGCATCGGTATCCGTGTGCTTACGAAGATGGTTGGAATGCTCTAAATTGGGTCAAATCAAGGATATGGCTTCAAAGTGGAAAGGACTCCAAGGTTTATGCTTACATGGCTGGTGATAGTTCCGGAGGCAACATTGCTCATCACGTTGCGGTGAGAGCTGCCGAGGAAGATGTTGAGGTACTAGGTAACATTCTTCTCCATCCACTCTTTGGTGGGGAGAAGCGAACAGAATCGGAGAAGAAACTGGATGGAAAGTATTTTGTGAGGTTGCAAGATCGTGATTGGTATTGGCGAGCTTTTCTACCTGAAGGGGAAGATAGAGATCATCCTGCTTGTAATCCATTTGGTCCTAAAGGTAAAAGCCTTGTAGGACTCAAGTTCCCTAAAAGCCTTGTTTGTGTGGCTGGTTTGGATCTTCTACAAGATTGGCAATTGGAATATGTGGAAGGTCTCCAGAAATCTAACCAAGATGTCAAACTTCTTTACCTAAAGGAAGCCACTATTGGTTTCTACTTCCTTCCTAATAATGATCATTTCTATTGCCTCATGAATGAGATAAACACCTTTGTGCATCCTAACTGCTGA
Protein sequence

>MS.gene005657.t1

MAGSNEVNLNESKSVVPLNTWVLISNFKLAYNLLRRADGTFNRELAEFLDRKVPANTIPVDGVFSFDHVDRNSGLFNRVYQPAPENVTTWGIIELEKPLSTTEIVPVIIFFHGGSFSHSSANSAIYDTFCRRLVSMCKAVVVSVNYRRSPEHRYPCAYEDGWNALNWVKSRIWLQSGKDSKVYAYMAGDSSGGNIAHHVAVRAAEEDVEVLGNILLHPLFGGEKRTESEKKLDGKYFVRLQDRDWYWRAFLPEGEDRDHPACNPFGPKGKSLVGLKFPKSLVCVAGLDLLQDWQLEYVEGLQKSNQDVKLLYLKEATIGFYFLPNNDHFYCLMNEINTFVHPNC