AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene018032

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene018032.t1 MTR_7g093950 100.000 350 0 0 1 350 1 350 0.0 726
MS.gene018032.t1 MTR_1g089310 84.571 350 48 4 1 350 17 360 0.0 614
MS.gene018032.t1 MTR_1g089310 84.571 350 48 4 1 350 1 344 0.0 613
MS.gene018032.t1 MTR_1g082210 70.655 351 95 6 1 350 1 344 0.0 512
MS.gene018032.t1 MTR_6g065110 40.964 332 187 5 17 347 12 335 2.17e-80 249
MS.gene018032.t1 MTR_6g065400 38.889 342 200 4 7 347 1 334 3.33e-80 248
MS.gene018032.t1 MTR_6g065120 41.083 314 177 4 35 347 30 336 9.13e-80 247
MS.gene018032.t1 MTR_6g065370 37.463 339 203 4 10 347 4 334 1.56e-74 234
MS.gene018032.t1 MTR_6g065270 35.588 340 214 4 9 347 1 336 4.25e-73 230
MS.gene018032.t1 MTR_6g065430 35.988 339 199 5 11 346 4 327 5.22e-64 206
MS.gene018032.t1 MTR_6g065340 36.943 314 171 6 36 347 41 329 6.36e-63 204
MS.gene018032.t1 MTR_4g050140 35.135 296 159 8 61 346 43 315 6.82e-43 151
MS.gene018032.t1 MTR_7g406880 33.333 312 168 11 61 347 54 350 3.41e-39 142
MS.gene018032.t1 MTR_7g107040 35.776 232 135 6 106 327 69 296 5.30e-38 138
MS.gene018032.t1 MTR_1g111280 31.949 313 173 8 53 346 51 342 2.38e-37 137
MS.gene018032.t1 MTR_1g102170 37.619 210 110 5 78 283 83 275 1.63e-36 135
MS.gene018032.t1 MTR_1g012430 31.579 304 179 9 63 346 13 307 1.64e-36 134
MS.gene018032.t1 MTR_7g056207 35.135 259 142 8 106 350 107 353 3.83e-35 132
MS.gene018032.t1 MTR_8g035540 32.308 260 157 5 99 346 64 316 7.05e-35 130
MS.gene018032.t1 MTR_6g464510 32.231 242 144 5 32 268 22 248 1.68e-34 129
MS.gene018032.t1 MTR_3g012440 34.167 240 146 5 97 328 79 314 2.14e-34 129
MS.gene018032.t1 MTR_4g086510 32.026 306 177 10 53 347 33 318 5.37e-34 127
MS.gene018032.t1 MTR_6g464320 32.210 267 164 6 69 329 54 309 1.57e-33 127
MS.gene018032.t1 MTR_0007s0520 34.109 258 156 8 100 347 72 325 5.78e-33 125
MS.gene018032.t1 MTR_6g022710 31.010 287 146 5 80 329 146 417 7.16e-33 127
MS.gene018032.t1 MTR_6g464280 34.274 248 136 6 78 314 62 293 1.10e-32 124
MS.gene018032.t1 MTR_4g086480 30.502 259 151 8 103 346 74 318 1.56e-32 124
MS.gene018032.t1 MTR_6g464120 32.787 244 138 7 32 268 23 247 1.87e-32 127
MS.gene018032.t1 MTR_3g450680 31.544 298 170 12 70 346 47 331 3.55e-32 123
MS.gene018032.t1 MTR_1g102160 38.012 171 97 3 106 268 78 247 1.75e-30 118
MS.gene018032.t1 MTR_4g086470 31.250 256 147 7 106 346 76 317 2.44e-30 118
MS.gene018032.t1 MTR_8g035500 29.470 302 180 9 25 315 8 287 4.07e-30 117
MS.gene018032.t1 MTR_3g101420 31.090 312 170 12 53 347 32 315 1.06e-29 116
MS.gene018032.t1 MTR_8g035520 29.070 258 166 5 101 347 74 325 2.03e-29 115
MS.gene018032.t1 MTR_8g040860 28.529 333 196 14 32 347 22 329 1.34e-27 110
MS.gene018032.t1 MTR_5g005920 29.341 334 189 15 25 340 9 313 1.66e-26 107
MS.gene018032.t1 MTR_4g086540 29.949 197 116 5 38 231 31 208 5.06e-26 106
MS.gene018032.t1 MTR_1g105020 28.904 301 170 11 38 320 21 295 1.31e-24 102
MS.gene018032.t1 MTR_7g051020 31.081 296 165 11 69 347 53 326 2.06e-24 102
MS.gene018032.t1 MTR_5g005900 27.778 306 169 14 23 308 12 285 1.38e-23 99.8
MS.gene018032.t1 MTR_5g005850 27.052 329 194 13 38 346 26 328 3.67e-22 95.9
MS.gene018032.t1 MTR_1g104933 32.031 256 133 10 69 311 51 278 3.34e-21 92.8
MS.gene018032.t1 MTR_1g104930 31.538 260 133 11 69 311 53 284 8.95e-21 92.0
MS.gene018032.t1 MTR_0007s0480 32.941 170 103 6 186 347 5 171 3.67e-13 67.4
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene018032.t1 AT3G63010 72.911 347 89 3 1 347 1 342 0.0 544
MS.gene018032.t1 AT5G27320 69.231 351 99 6 1 350 1 343 6.32e-178 497
MS.gene018032.t1 AT3G05120 66.667 351 110 5 1 350 1 345 2.89e-173 485
MS.gene018032.t1 AT5G23530 34.615 338 194 7 15 347 12 327 6.55e-62 201
MS.gene018032.t1 AT5G16080 32.026 306 173 7 59 349 59 344 8.80e-44 154
MS.gene018032.t1 AT1G68620 35.246 244 132 6 69 306 65 288 4.19e-42 149
MS.gene018032.t1 AT5G62180 30.970 268 169 5 32 294 15 271 4.26e-40 144
MS.gene018032.t1 AT2G45600 33.188 229 139 3 106 322 66 292 5.03e-35 130
MS.gene018032.t1 AT5G14310 32.331 266 135 5 106 329 151 413 4.91e-33 127
MS.gene018032.t1 AT1G19190 35.789 285 140 14 53 321 30 287 6.34e-33 125
MS.gene018032.t1 AT2G03550 31.481 324 176 12 39 347 19 311 6.54e-33 124
MS.gene018032.t1 AT1G47480 29.595 321 194 11 33 347 16 310 8.13e-33 124
MS.gene018032.t1 AT5G06570 35.714 266 154 9 96 347 64 326 2.35e-32 124
MS.gene018032.t1 AT5G06570 35.714 266 154 9 96 347 64 326 2.35e-32 124
MS.gene018032.t1 AT5G06570 35.714 266 154 9 96 347 79 341 3.54e-32 123
MS.gene018032.t1 AT5G06570 35.714 266 154 9 96 347 79 341 3.54e-32 123
MS.gene018032.t1 AT2G45610 28.720 289 179 6 69 347 53 324 3.78e-30 117
MS.gene018032.t1 AT3G27320 29.023 348 170 9 56 329 51 395 3.38e-29 117
MS.gene018032.t1 AT3G27320 31.058 293 144 6 78 329 152 427 1.41e-28 115
MS.gene018032.t1 AT3G48690 32.836 268 146 11 50 302 27 275 7.60e-28 111
MS.gene018032.t1 AT3G48700 31.348 319 177 14 50 346 27 325 1.02e-27 111
MS.gene018032.t1 AT1G49650 32.090 268 154 8 53 311 86 334 1.41e-26 108
MS.gene018032.t1 AT1G49640 29.183 257 154 9 56 308 40 272 1.19e-24 102
MS.gene018032.t1 AT1G49660 30.303 264 159 6 53 308 30 276 1.09e-23 100

Find 70 sgRNAs with CRISPR-Local

Find 94 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ACAATTTCTGTTGTACTTAA+TGG 0.166515 7.1:+13734125 None:intergenic
TGGCTTATGTGGATGGTTTA+AGG 0.186814 7.1:-13733518 MS.gene018032:CDS
GTGGATGGTTTAAGGAATTT+TGG 0.215905 7.1:-13733510 MS.gene018032:CDS
TGATCATTTCTATTGCCTTA+TGG 0.245202 7.1:-13733424 MS.gene018032:CDS
ATTCTTCTTCATCCTTTGTT+TGG 0.284217 7.1:-13733768 MS.gene018032:CDS
GCAGAAGGAATTGAAGTGTT+AGG 0.327890 7.1:-13733795 MS.gene018032:CDS
AAAAGTCTTGTTTGTGTGGC+TGG 0.337676 7.1:-13733567 MS.gene018032:CDS
CAATAGAAATGATCATTATT+AGG 0.341519 7.1:+13733432 None:intergenic
TGGTCTCTATCTTCACCTTC+TGG 0.343587 7.1:+13733654 None:intergenic
AATGGGTGAAGTCAAGAAAA+TGG 0.346501 7.1:-13733920 MS.gene018032:CDS
GATTCTGAAATGAGATTAGA+TGG 0.348082 7.1:-13733729 MS.gene018032:CDS
TCTTGTTTGTGTGGCTGGTT+TGG 0.349537 7.1:-13733562 MS.gene018032:CDS
TACAAGATCGTGATTGGTAT+TGG 0.350184 7.1:-13733689 MS.gene018032:CDS
TACCTTAAGGAGGCTACTAT+TGG 0.351911 7.1:-13733468 MS.gene018032:CDS
TGTTAAACTTCTTTACCTTA+AGG 0.362269 7.1:-13733481 MS.gene018032:CDS
AAGTCAACCTCAGTGAATCT+AGG 0.363736 7.1:-13734783 MS.gene018032:CDS
CTTCTTCATCCTTTGTTTGG+TGG 0.365813 7.1:-13733765 MS.gene018032:CDS
AAGTAATAGTATTAACAGTT+AGG 0.372219 7.1:+13733378 None:intergenic
TTCAGAAAATGAATCTCAAT+GGG 0.401908 7.1:-13734168 MS.gene018032:CDS
AGTTCTTGATTTCCTCCATA+AGG 0.402550 7.1:+13733409 None:intergenic
TTAGATTACAAGATCGTGAT+TGG 0.411360 7.1:-13733695 MS.gene018032:CDS
AAAGTTTATGTTTACATGGC+AGG 0.415400 7.1:-13733876 MS.gene018032:CDS
AACCAATAGTAGCCTCCTTA+AGG 0.425272 7.1:+13733466 None:intergenic
CACCCTGCTTGTAACCCGTT+TGG 0.430827 7.1:-13733633 MS.gene018032:CDS
TGTAACCCGTTTGGTCCAAA+AGG 0.441552 7.1:-13733624 MS.gene018032:CDS
TACATGGCAGGTGATAGTTC+TGG 0.444051 7.1:-13733864 MS.gene018032:CDS
CAGAAGGAATTGAAGTGTTA+GGG 0.454064 7.1:-13733794 MS.gene018032:CDS
CTTCAGAAAATGAATCTCAA+TGG 0.456710 7.1:-13734169 MS.gene018032:CDS
TCGACTGGAATAGCATTTGC+CGG 0.471657 7.1:+13734260 None:intergenic
AGATTGGCAATTGGCTTATG+TGG 0.475777 7.1:-13733529 MS.gene018032:CDS
TTTCCATGTGCTTATGAAGA+TGG 0.482162 7.1:-13733957 MS.gene018032:CDS
GGACCAAACGGGTTACAAGC+AGG 0.492003 7.1:+13733630 None:intergenic
ATAAGAACATATGTATTCAA+TGG 0.496984 7.1:+13734371 None:intergenic
GTAACCCGTTTGGTCCAAAA+GGG 0.503887 7.1:-13733623 MS.gene018032:CDS
CATGTGCTTATGAAGATGGT+TGG 0.507644 7.1:-13733953 MS.gene018032:CDS
CCTGTCATAGTATTCTTCCA+TGG 0.508891 7.1:-13734101 MS.gene018032:CDS
GGTTAATTACCGACGATCAC+CGG 0.514778 7.1:-13733988 MS.gene018032:CDS
TCCTAAAAGTCTTGTTTGTG+TGG 0.514991 7.1:-13733571 MS.gene018032:CDS
ATGGTTGGAATGCACTCAAA+TGG 0.515042 7.1:-13733938 MS.gene018032:CDS
AAAGAAAGTTTATGTTTACA+TGG 0.521453 7.1:-13733880 MS.gene018032:CDS
TGGCAATTGGCTTATGTGGA+TGG 0.532054 7.1:-13733525 MS.gene018032:CDS
AATGAAAAGACTCCATCGAC+TGG 0.538413 7.1:+13734245 None:intergenic
CAAGAAACTCTGCTAAATCT+CGG 0.546001 7.1:+13734294 None:intergenic
AGTCAACCTCAGTGAATCTA+GGG 0.546591 7.1:-13734782 MS.gene018032:intron
GTTTCTTGACAGAAAAGTCC+CGG 0.552120 7.1:-13734279 MS.gene018032:CDS
TTGTAAAGCTGCTGTTGTAT+CGG 0.555019 7.1:-13734009 MS.gene018032:CDS
GCAAATGCTATTCCAGTCGA+TGG 0.555124 7.1:-13734257 MS.gene018032:CDS
ATCGATACTCCGGTGATCGT+CGG 0.555832 7.1:+13733979 None:intergenic
GACCAAACGGGTTACAAGCA+GGG 0.558028 7.1:+13733631 None:intergenic
CAAGAAAATGGCTTCAAAGT+GGG 0.561680 7.1:-13733908 MS.gene018032:CDS
CCATGGAAGAATACTATGAC+AGG 0.563416 7.1:+13734101 None:intergenic
TAAACTTCTTTACCTTAAGG+AGG 0.574148 7.1:-13733478 MS.gene018032:CDS
CGACTGGAATAGCATTTGCC+GGG 0.575794 7.1:+13734261 None:intergenic
AATCTTCTAAGAAGAGCAGA+TGG 0.579373 7.1:-13734326 MS.gene018032:CDS
TACAACTAACCAGACATGAC+TGG 0.584996 7.1:-13734814 None:intergenic
CAACCATCTTCATAAGCACA+TGG 0.591192 7.1:+13733954 None:intergenic
TGGTTGGAATGCACTCAAAT+GGG 0.591765 7.1:-13733937 MS.gene018032:CDS
TCATTTCTATTGCCTTATGG+AGG 0.599565 7.1:-13733421 MS.gene018032:CDS
TGTAGCAGTAAAAGCTTGTG+AGG 0.600327 7.1:-13733823 MS.gene018032:CDS
GCACATGGAAATCGATACTC+CGG 0.608809 7.1:+13733969 None:intergenic
TCAAGAAAATGGCTTCAAAG+TGG 0.615492 7.1:-13733909 MS.gene018032:CDS
ATGGCAGGTGATAGTTCTGG+TGG 0.630946 7.1:-13733861 MS.gene018032:CDS
GATCATATCGAACGAAACAC+CGG 0.631025 7.1:-13734221 MS.gene018032:CDS
ATAAACACGATTGAATAGAC+CGG 0.640482 7.1:+13734202 None:intergenic
TAACCCGTTTGGTCCAAAAG+GGG 0.642733 7.1:-13733622 MS.gene018032:CDS
AATGAGAGAAGCTTCCACCA+TGG 0.652602 7.1:+13734084 None:intergenic
GTCATAGTATTCTTCCATGG+TGG 0.656265 7.1:-13734098 MS.gene018032:CDS
TCAGAAAATGAATCTCAATG+GGG 0.736042 7.1:-13734167 MS.gene018032:CDS
ATATTACCCTAGATTCACTG+AGG 0.743147 7.1:+13734776 None:intergenic
CAAACGGGTTACAAGCAGGG+TGG 0.789743 7.1:+13733634 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAGAAAGTTTATGTTTACA+TGG - chr7.1:13734308-13734327 MS.gene018032:CDS 20.0%
!! AAGAAAAATGAAACAAATCT+TGG + chr7.1:13733733-13733752 None:intergenic 20.0%
!! AGAAAAATGAAACAAATCTT+GGG + chr7.1:13733732-13733751 None:intergenic 20.0%
!! ATAAGAACATATGTATTCAA+TGG + chr7.1:13733820-13733839 None:intergenic 20.0%
!! CAATAGAAATGATCATTATT+AGG + chr7.1:13734759-13734778 None:intergenic 20.0%
!! TAAACTTTAACATATGTGAT+TGG - chr7.1:13733537-13733556 MS.gene018032:CDS 20.0%
!!! AAAAACAAAACTTTCTAAGA+TGG + chr7.1:13733446-13733465 None:intergenic 20.0%
!!! ATCATGTAATATTTTTCTGT+GGG - chr7.1:13733572-13733591 MS.gene018032:CDS 20.0%
! AAAGGGGAAAAAAATCTTAA+AGG - chr7.1:13734582-13734601 MS.gene018032:intron 25.0%
! ACAATTTCTGTTGTACTTAA+TGG + chr7.1:13734066-13734085 None:intergenic 25.0%
! GCAAAACAATAACTTTAGAT+TGG + chr7.1:13733786-13733805 None:intergenic 25.0%
! TCATTATGTGTCACAATAAT+TGG - chr7.1:13733690-13733709 MS.gene018032:CDS 25.0%
! TGTTAAACTTCTTTACCTTA+AGG - chr7.1:13734707-13734726 MS.gene018032:intron 25.0%
! TTCAGAAAATGAATCTCAAT+GGG - chr7.1:13734020-13734039 MS.gene018032:CDS 25.0%
!! AGTTTCTTCTTTTTATGTGT+TGG - chr7.1:13733632-13733651 MS.gene018032:CDS 25.0%
!! GATCATGTAATATTTTTCTG+TGG - chr7.1:13733571-13733590 MS.gene018032:CDS 25.0%
!! GTTTCTTCTTTTTATGTGTT+GGG - chr7.1:13733633-13733652 MS.gene018032:CDS 25.0%
!! TCTATGATACATTTTGTAGA+AGG - chr7.1:13734145-13734164 MS.gene018032:CDS 25.0%
!!! TTAAGATTTTTTTCCCCTTT+TGG + chr7.1:13734582-13734601 None:intergenic 25.0%
AAAGTTTATGTTTACATGGC+AGG - chr7.1:13734312-13734331 MS.gene018032:CDS 30.0%
ATAAACACGATTGAATAGAC+CGG + chr7.1:13733989-13734008 None:intergenic 30.0%
ATTCTTCTTCATCCTTTGTT+TGG - chr7.1:13734420-13734439 MS.gene018032:intron 30.0%
CTTCAGAAAATGAATCTCAA+TGG - chr7.1:13734019-13734038 MS.gene018032:CDS 30.0%
TAAACTTCTTTACCTTAAGG+AGG - chr7.1:13734710-13734729 MS.gene018032:intron 30.0%
TCAGAAAATGAATCTCAATG+GGG - chr7.1:13734021-13734040 MS.gene018032:CDS 30.0%
TGATCATTTCTATTGCCTTA+TGG - chr7.1:13734764-13734783 MS.gene018032:intron 30.0%
TTAGATTACAAGATCGTGAT+TGG - chr7.1:13734493-13734512 MS.gene018032:intron 30.0%
! GGTTTCTTGTTATGGTAAAT+TGG - chr7.1:13733654-13733673 MS.gene018032:CDS 30.0%
! GTTTGGATCTTTTACAAGAT+TGG - chr7.1:13734643-13734662 MS.gene018032:intron 30.0%
! TCTTTTACAAGATTGGCAAT+TGG - chr7.1:13734650-13734669 MS.gene018032:intron 30.0%
!! GATTCATTTTCTGAAGATGA+TGG + chr7.1:13734015-13734034 None:intergenic 30.0%
!! GATTCTGAAATGAGATTAGA+TGG - chr7.1:13734459-13734478 MS.gene018032:intron 30.0%
!!! ATATTTTTCTGTGGGTTAGT+TGG - chr7.1:13733580-13733599 MS.gene018032:CDS 30.0%
AATGGGTGAAGTCAAGAAAA+TGG - chr7.1:13734268-13734287 MS.gene018032:CDS 35.0%
AGTTCTTGATTTCCTCCATA+AGG + chr7.1:13734782-13734801 None:intergenic 35.0%
ATATTACCCTAGATTCACTG+AGG + chr7.1:13733415-13733434 None:intergenic 35.0%
ATGTGTTGGGTTTCTTGTTA+TGG - chr7.1:13733646-13733665 MS.gene018032:CDS 35.0%
CAAGAAAATGGCTTCAAAGT+GGG - chr7.1:13734280-13734299 MS.gene018032:CDS 35.0%
CAAGAAACTCTGCTAAATCT+CGG + chr7.1:13733897-13733916 None:intergenic 35.0%
TACAAGATCGTGATTGGTAT+TGG - chr7.1:13734499-13734518 MS.gene018032:intron 35.0%
TCAAGAAAATGGCTTCAAAG+TGG - chr7.1:13734279-13734298 MS.gene018032:CDS 35.0%
TCATTTCTATTGCCTTATGG+AGG - chr7.1:13734767-13734786 MS.gene018032:intron 35.0%
TTGTAAAGCTGCTGTTGTAT+CGG - chr7.1:13734179-13734198 MS.gene018032:CDS 35.0%
TTTCCATGTGCTTATGAAGA+TGG - chr7.1:13734231-13734250 MS.gene018032:CDS 35.0%
! AATCTTCTAAGAAGAGCAGA+TGG - chr7.1:13733862-13733881 MS.gene018032:CDS 35.0%
! CAGAAGGAATTGAAGTGTTA+GGG - chr7.1:13734394-13734413 MS.gene018032:intron 35.0%
! GTGGATGGTTTAAGGAATTT+TGG - chr7.1:13734678-13734697 MS.gene018032:intron 35.0%
!! TCCTAAAAGTCTTGTTTGTG+TGG - chr7.1:13734617-13734636 MS.gene018032:intron 35.0%
!!! CTTTTTTCACCACCAAACAA+AGG + chr7.1:13734435-13734454 None:intergenic 35.0%
AACCAATAGTAGCCTCCTTA+AGG + chr7.1:13734725-13734744 None:intergenic 40.0%
AAGTCAACCTCAGTGAATCT+AGG - chr7.1:13733405-13733424 MS.gene018032:CDS 40.0%
AATGAAAAGACTCCATCGAC+TGG + chr7.1:13733946-13733965 None:intergenic 40.0%
AGTCAACCTCAGTGAATCTA+GGG - chr7.1:13733406-13733425 MS.gene018032:CDS 40.0%
ATGGTTGGAATGCACTCAAA+TGG - chr7.1:13734250-13734269 MS.gene018032:CDS 40.0%
CAACCATCTTCATAAGCACA+TGG + chr7.1:13734237-13734256 None:intergenic 40.0%
CATGTGCTTATGAAGATGGT+TGG - chr7.1:13734235-13734254 MS.gene018032:CDS 40.0%
CCATGGAAGAATACTATGAC+AGG + chr7.1:13734090-13734109 None:intergenic 40.0%
CCTGTCATAGTATTCTTCCA+TGG - chr7.1:13734087-13734106 MS.gene018032:CDS 40.0%
GATCATATCGAACGAAACAC+CGG - chr7.1:13733967-13733986 MS.gene018032:CDS 40.0%
GTCATAGTATTCTTCCATGG+TGG - chr7.1:13734090-13734109 MS.gene018032:CDS 40.0%
GTTTCTTGACAGAAAAGTCC+CGG - chr7.1:13733909-13733928 MS.gene018032:CDS 40.0%
TACCTTAAGGAGGCTACTAT+TGG - chr7.1:13734720-13734739 MS.gene018032:intron 40.0%
TGGCTTATGTGGATGGTTTA+AGG - chr7.1:13734670-13734689 MS.gene018032:intron 40.0%
TGGTTGGAATGCACTCAAAT+GGG - chr7.1:13734251-13734270 MS.gene018032:CDS 40.0%
TGTAGCAGTAAAAGCTTGTG+AGG - chr7.1:13734365-13734384 MS.gene018032:CDS 40.0%
! AGATTGGCAATTGGCTTATG+TGG - chr7.1:13734659-13734678 MS.gene018032:intron 40.0%
! CTTCTTCATCCTTTGTTTGG+TGG - chr7.1:13734423-13734442 MS.gene018032:intron 40.0%
! GCAGAAGGAATTGAAGTGTT+AGG - chr7.1:13734393-13734412 MS.gene018032:intron 40.0%
! GCCACACAAACAAGACTTTT+AGG + chr7.1:13734621-13734640 None:intergenic 40.0%
! TTTTCCCCTTTTGGACCAAA+CGG + chr7.1:13734573-13734592 None:intergenic 40.0%
!! AAAAGTCTTGTTTGTGTGGC+TGG - chr7.1:13734621-13734640 MS.gene018032:intron 40.0%
!! GTGGGTTAGTTGGCTTAATT+TGG - chr7.1:13733590-13733609 MS.gene018032:CDS 40.0%
!!! TGGAGAGCTTTTTTACCAGA+AGG - chr7.1:13734519-13734538 MS.gene018032:intron 40.0%
AATGAGAGAAGCTTCCACCA+TGG + chr7.1:13734107-13734126 None:intergenic 45.0%
GCAAATGCTATTCCAGTCGA+TGG - chr7.1:13733931-13733950 MS.gene018032:CDS 45.0%
GCACATGGAAATCGATACTC+CGG + chr7.1:13734222-13734241 None:intergenic 45.0%
GCTTGTGAGGAAAAAGCAGA+AGG - chr7.1:13734378-13734397 MS.gene018032:CDS 45.0%
GGTTAATTACCGACGATCAC+CGG - chr7.1:13734200-13734219 MS.gene018032:CDS 45.0%
GTAACCCGTTTGGTCCAAAA+GGG - chr7.1:13734565-13734584 MS.gene018032:intron 45.0%
TAACCCGTTTGGTCCAAAAG+GGG - chr7.1:13734566-13734585 MS.gene018032:intron 45.0%
TACATGGCAGGTGATAGTTC+TGG - chr7.1:13734324-13734343 MS.gene018032:CDS 45.0%
TCGACTGGAATAGCATTTGC+CGG + chr7.1:13733931-13733950 None:intergenic 45.0%
TGGTCTCTATCTTCACCTTC+TGG + chr7.1:13734537-13734556 None:intergenic 45.0%
TGTAACCCGTTTGGTCCAAA+AGG - chr7.1:13734564-13734583 MS.gene018032:intron 45.0%
! TCTTGTTTGTGTGGCTGGTT+TGG - chr7.1:13734626-13734645 MS.gene018032:intron 45.0%
! TGGCAATTGGCTTATGTGGA+TGG - chr7.1:13734663-13734682 MS.gene018032:intron 45.0%
! TTTCCCCTTTTGGACCAAAC+GGG + chr7.1:13734572-13734591 None:intergenic 45.0%
ATCGATACTCCGGTGATCGT+CGG + chr7.1:13734212-13734231 None:intergenic 50.0%
CGACTGGAATAGCATTTGCC+GGG + chr7.1:13733930-13733949 None:intergenic 50.0%
!! ATGGCAGGTGATAGTTCTGG+TGG - chr7.1:13734327-13734346 MS.gene018032:CDS 50.0%
!! GACCAAACGGGTTACAAGCA+GGG + chr7.1:13734560-13734579 None:intergenic 50.0%
CACCCTGCTTGTAACCCGTT+TGG - chr7.1:13734555-13734574 MS.gene018032:intron 55.0%
!! CAAACGGGTTACAAGCAGGG+TGG + chr7.1:13734557-13734576 None:intergenic 55.0%
!! GGACCAAACGGGTTACAAGC+AGG + chr7.1:13734561-13734580 None:intergenic 55.0%


Chromosome Type Strat End Strand Name
chr7.1 gene 13733389 13734821 13733389 ID=MS.gene018032
chr7.1 mRNA 13733389 13734821 13733389 ID=MS.gene018032.t1;Parent=MS.gene018032
chr7.1 exon 13734783 13734821 13734783 ID=MS.gene018032.t1.exon1;Parent=MS.gene018032.t1
chr7.1 CDS 13734783 13734821 13734783 ID=cds.MS.gene018032.t1;Parent=MS.gene018032.t1
chr7.1 exon 13733389 13734402 13733389 ID=MS.gene018032.t1.exon2;Parent=MS.gene018032.t1
chr7.1 CDS 13733389 13734402 13733389 ID=cds.MS.gene018032.t1;Parent=MS.gene018032.t1
Gene Sequence

>MS.gene018032

ATGACTGGTACTAATGAAGTCAACCTCAGTGAATCTAGGGTAATATATCATCTTCCATCTTAGAAAGTTTTGTTTTTTTTGTTTAAAGCTTGCATTTTTATGTTTTTGCTTTGTTGTTTGCTTTATTTTTGATGTTTTCAAATAGTTCTAAACTTTAACATATGTGATTGGTGTTTTGTTAAGATCATGTAATATTTTTCTGTGGGTTAGTTGGCTTAATTTGGTTTTTGTTTTCTACTTTCTAGTTTCTTCTTTTTATGTGTTGGGTTTCTTGTTATGGTAAATTGGAAAGATTTGATTTTCATTATGTGTCACAATAATTGGAAATTTTTGTCTTTTACCCAAGATTTGTTTCATTTTTCTTTCTTCTGCAATGATTCAACACAAAAAAGAACCAATCTAAAGTTATTGTTTTGCAGAGTGTTGTTCCATTGAATACATATGTTCTTATCTCAAATTTCAAGCTTGCTTACAATCTTCTAAGAAGAGCAGATGGAACATTCAACCGAGATTTAGCAGAGTTTCTTGACAGAAAAGTCCCGGCAAATGCTATTCCAGTCGATGGAGTCTTTTCATTCGATCATATCGAACGAAACACCGGTCTATTCAATCGTGTTTATCTACCATCATCTTCAGAAAATGAATCTCAATGGGGTGTCAAAGATTTAGAGAAACCATTAAGTACAACAGAAATTGTTCCTGTCATAGTATTCTTCCATGGTGGAAGCTTCTCTCATTCTTCAGCAAATAGTGCTATCTATGATACATTTTGTAGAAGGTTAGTAAGTGTTTGTAAAGCTGCTGTTGTATCGGTTAATTACCGACGATCACCGGAGTATCGATTTCCATGTGCTTATGAAGATGGTTGGAATGCACTCAAATGGGTGAAGTCAAGAAAATGGCTTCAAAGTGGGAAAGAAAAGAAAGTTTATGTTTACATGGCAGGTGATAGTTCTGGTGGAAACATTGTTCATCATGTAGCAGTAAAAGCTTGTGAGGAAAAAGCAGAAGGAATTGAAGTGTTAGGGAACATTCTTCTTCATCCTTTGTTTGGTGGTGAAAAAAGAACAGATTCTGAAATGAGATTAGATGGAAAGTACTTTGTTAGATTACAAGATCGTGATTGGTATTGGAGAGCTTTTTTACCAGAAGGTGAAGATAGAGACCACCCTGCTTGTAACCCGTTTGGTCCAAAAGGGGAAAAAAATCTTAAAGGACTTGATAAATTTCCTAAAAGTCTTGTTTGTGTGGCTGGTTTGGATCTTTTACAAGATTGGCAATTGGCTTATGTGGATGGTTTAAGGAATTTTGGTCAAGATGTTAAACTTCTTTACCTTAAGGAGGCTACTATTGGTTTTTACTTCTTGCCTAATAATGATCATTTCTATTGCCTTATGGAGGAAATCAAGAACTTTGTTAATCCTAACTGTTAA
Protein sequence

>MS.gene018032.t1

MTGTNEVNLSESRSVVPLNTYVLISNFKLAYNLLRRADGTFNRDLAEFLDRKVPANAIPVDGVFSFDHIERNTGLFNRVYLPSSSENESQWGVKDLEKPLSTTEIVPVIVFFHGGSFSHSSANSAIYDTFCRRLVSVCKAAVVSVNYRRSPEYRFPCAYEDGWNALKWVKSRKWLQSGKEKKVYVYMAGDSSGGNIVHHVAVKACEEKAEGIEVLGNILLHPLFGGEKRTDSEMRLDGKYFVRLQDRDWYWRAFLPEGEDRDHPACNPFGPKGEKNLKGLDKFPKSLVCVAGLDLLQDWQLAYVDGLRNFGQDVKLLYLKEATIGFYFLPNNDHFYCLMEEIKNFVNPNC