AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene52704

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene52704.t1 MTR_7g093950 99.429 350 2 0 1 350 1 350 0.0 722
MS.gene52704.t1 MTR_1g089310 84.000 350 50 4 1 350 17 360 0.0 610
MS.gene52704.t1 MTR_1g089310 84.000 350 50 4 1 350 1 344 0.0 609
MS.gene52704.t1 MTR_1g082210 70.370 351 96 6 1 350 1 344 0.0 508
MS.gene52704.t1 MTR_6g065110 40.964 332 187 5 17 347 12 335 4.20e-80 248
MS.gene52704.t1 MTR_6g065400 38.889 342 200 4 7 347 1 334 4.91e-80 248
MS.gene52704.t1 MTR_6g065120 41.083 314 177 4 35 347 30 336 1.90e-79 246
MS.gene52704.t1 MTR_6g065370 37.463 339 203 4 10 347 4 334 2.68e-74 233
MS.gene52704.t1 MTR_6g065270 35.588 340 214 4 9 347 1 336 7.14e-73 229
MS.gene52704.t1 MTR_6g065430 35.988 339 199 5 11 346 4 327 9.52e-64 206
MS.gene52704.t1 MTR_6g065340 36.943 314 171 6 36 347 41 329 1.02e-62 203
MS.gene52704.t1 MTR_4g050140 35.135 296 159 8 61 346 43 315 5.58e-43 151
MS.gene52704.t1 MTR_7g406880 33.333 312 168 11 61 347 54 350 6.64e-39 141
MS.gene52704.t1 MTR_1g111280 32.095 296 162 7 69 346 68 342 6.10e-38 139
MS.gene52704.t1 MTR_7g107040 35.776 232 135 6 106 327 69 296 1.99e-37 137
MS.gene52704.t1 MTR_1g012430 31.579 304 179 9 63 346 13 307 7.64e-37 135
MS.gene52704.t1 MTR_7g056207 34.749 259 143 8 106 350 107 353 1.84e-35 132
MS.gene52704.t1 MTR_1g102170 38.462 195 99 5 78 268 83 260 2.68e-35 132
MS.gene52704.t1 MTR_8g035540 31.907 257 162 4 99 346 64 316 1.58e-34 129
MS.gene52704.t1 MTR_6g464510 32.231 242 144 5 32 268 22 248 2.39e-34 129
MS.gene52704.t1 MTR_4g086510 31.699 306 178 10 53 347 33 318 2.55e-34 129
MS.gene52704.t1 MTR_6g464320 32.210 267 164 6 69 329 54 309 1.67e-33 127
MS.gene52704.t1 MTR_3g012440 33.750 240 147 5 97 328 79 314 3.39e-33 126
MS.gene52704.t1 MTR_6g022710 31.010 287 146 5 80 329 146 417 4.79e-33 127
MS.gene52704.t1 MTR_6g464120 32.787 244 138 7 32 268 23 247 2.11e-32 127
MS.gene52704.t1 MTR_0007s0520 33.977 259 155 8 100 347 72 325 2.88e-32 123
MS.gene52704.t1 MTR_4g086480 30.078 256 156 8 103 346 74 318 6.03e-32 122
MS.gene52704.t1 MTR_6g464280 35.176 199 104 5 78 267 62 244 8.78e-32 122
MS.gene52704.t1 MTR_3g450680 30.667 300 170 12 70 346 47 331 3.51e-31 120
MS.gene52704.t1 MTR_1g102160 38.012 171 97 3 106 268 78 247 2.05e-30 118
MS.gene52704.t1 MTR_8g035500 28.477 302 183 8 25 315 8 287 6.46e-30 117
MS.gene52704.t1 MTR_4g086470 30.830 253 152 7 106 346 76 317 7.83e-30 116
MS.gene52704.t1 MTR_8g035520 29.070 258 166 5 101 347 74 325 2.23e-29 115
MS.gene52704.t1 MTR_3g101420 31.090 312 170 12 53 347 32 315 2.29e-29 115
MS.gene52704.t1 MTR_8g040860 27.761 335 196 14 32 347 22 329 1.25e-26 108
MS.gene52704.t1 MTR_4g086540 29.949 197 116 5 38 231 31 208 6.85e-26 105
MS.gene52704.t1 MTR_5g005920 28.743 334 191 15 25 340 9 313 4.19e-25 103
MS.gene52704.t1 MTR_1g105020 28.571 301 171 11 38 320 21 295 3.05e-24 101
MS.gene52704.t1 MTR_7g051020 30.976 297 164 12 69 347 53 326 2.33e-23 99.4
MS.gene52704.t1 MTR_5g005900 27.451 306 170 14 23 308 12 285 2.86e-23 99.0
MS.gene52704.t1 MTR_5g005850 26.586 331 193 14 38 346 26 328 4.23e-21 92.8
MS.gene52704.t1 MTR_1g104933 31.641 256 134 10 69 311 51 278 3.54e-20 90.1
MS.gene52704.t1 MTR_1g104930 31.154 260 134 11 69 311 53 284 8.67e-20 89.0
MS.gene52704.t1 MTR_0007s0480 32.749 171 102 6 186 347 5 171 1.03e-12 66.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene52704.t1 AT3G63010 73.199 347 88 3 1 347 1 342 0.0 544
MS.gene52704.t1 AT5G27320 69.516 351 98 6 1 350 1 343 2.75e-178 498
MS.gene52704.t1 AT3G05120 66.667 351 110 5 1 350 1 345 1.56e-172 483
MS.gene52704.t1 AT5G23530 34.615 338 194 7 15 347 12 327 8.11e-62 201
MS.gene52704.t1 AT5G16080 32.026 306 173 7 59 349 59 344 6.42e-44 154
MS.gene52704.t1 AT1G68620 35.246 244 132 6 69 306 65 288 8.30e-42 149
MS.gene52704.t1 AT5G62180 30.597 268 170 5 32 294 15 271 6.76e-39 141
MS.gene52704.t1 AT2G45600 32.751 229 140 3 106 322 66 292 8.85e-34 127
MS.gene52704.t1 AT5G14310 32.707 266 134 5 106 329 151 413 1.51e-33 129
MS.gene52704.t1 AT2G03550 31.481 324 176 12 39 347 19 311 1.07e-32 124
MS.gene52704.t1 AT1G19190 35.439 285 141 14 53 321 30 287 1.42e-32 124
MS.gene52704.t1 AT5G06570 35.338 266 155 9 96 347 64 326 5.76e-32 122
MS.gene52704.t1 AT5G06570 35.338 266 155 9 96 347 64 326 5.76e-32 122
MS.gene52704.t1 AT5G06570 35.338 266 155 9 96 347 79 341 7.41e-32 122
MS.gene52704.t1 AT5G06570 35.338 266 155 9 96 347 79 341 7.41e-32 122
MS.gene52704.t1 AT1G47480 29.283 321 195 11 33 347 16 310 1.36e-31 121
MS.gene52704.t1 AT2G45610 28.374 289 180 6 69 347 53 324 2.27e-30 118
MS.gene52704.t1 AT3G27320 29.310 348 169 9 56 329 51 395 3.04e-30 120
MS.gene52704.t1 AT3G27320 31.399 293 143 6 78 329 152 427 1.20e-29 118
MS.gene52704.t1 AT3G48690 32.463 268 147 11 50 302 27 275 1.34e-27 110
MS.gene52704.t1 AT3G48700 33.704 270 139 13 50 299 27 276 1.75e-27 110
MS.gene52704.t1 AT1G49650 32.090 268 154 8 53 311 86 334 1.46e-26 108
MS.gene52704.t1 AT1G49640 29.183 257 154 9 56 308 40 272 6.43e-25 103
MS.gene52704.t1 AT1G49660 30.303 264 159 6 53 308 30 276 1.17e-23 99.8

Find 70 sgRNAs with CRISPR-Local

Find 97 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ACAATTTCTGTTGTGCTTAA+TGG 0.160663 7.2:+15555664 None:intergenic
TGGCTTATGTGGATGGTTTA+AGG 0.186814 7.2:-15555057 MS.gene52704:CDS
GTGGATGGTTTAAGGAATTT+TGG 0.215905 7.2:-15555049 MS.gene52704:CDS
TGATCATTTCTATTGCCTTA+TGG 0.245202 7.2:-15554963 MS.gene52704:CDS
GTAACCCGTTTGGTCCAAAA+AGG 0.273043 7.2:-15555162 MS.gene52704:CDS
ATTCTTCTTCATCCTTTGTT+TGG 0.284217 7.2:-15555307 MS.gene52704:CDS
GCAGAAGGAATTGAAGTGTT+AGG 0.327890 7.2:-15555334 MS.gene52704:CDS
AAAAGTCTTGTTTGTGTGGC+TGG 0.337676 7.2:-15555106 MS.gene52704:CDS
CAATAGAAATGATCATTATT+AGG 0.341519 7.2:+15554971 None:intergenic
TGGTCTCTATCTTCACCTTC+TGG 0.343587 7.2:+15555193 None:intergenic
AATGGGTGAAGTCAAGAAAA+TGG 0.346501 7.2:-15555459 MS.gene52704:CDS
GATTCTGAAATGAGATTAGA+TGG 0.348082 7.2:-15555268 MS.gene52704:CDS
TCTTGTTTGTGTGGCTGGTT+TGG 0.349537 7.2:-15555101 MS.gene52704:CDS
TACAAGATCGTGATTGGTAT+TGG 0.350184 7.2:-15555228 MS.gene52704:CDS
TACCTTAAGGAGGCTACTAT+TGG 0.351911 7.2:-15555007 MS.gene52704:CDS
TTCACTGAGGTTGACTTCAT+TGG 0.353524 7.2:+15556354 None:intergenic
TGTTAAACTTCTTTACCTTA+AGG 0.362269 7.2:-15555020 MS.gene52704:CDS
AAGTCAACCTCAGTGAATCT+AGG 0.363736 7.2:-15556348 MS.gene52704:CDS
CTTCTTCATCCTTTGTTTGG+TGG 0.365813 7.2:-15555304 MS.gene52704:CDS
AAGTAATAGTATTAACAGTT+AGG 0.372219 7.2:+15554917 None:intergenic
TTCAGAAAATGAATCTCAAT+GGG 0.401908 7.2:-15555707 MS.gene52704:CDS
AGTTCTTGATTTCCTCCATA+AGG 0.402550 7.2:+15554948 None:intergenic
TTAGATTACAAGATCGTGAT+TGG 0.411360 7.2:-15555234 MS.gene52704:CDS
AGTCCCGGCAAATGCTATTC+CGG 0.421368 7.2:-15555803 MS.gene52704:CDS
TACATGGCTGGTGATAGTTC+TGG 0.422303 7.2:-15555403 MS.gene52704:CDS
AACCAATAGTAGCCTCCTTA+AGG 0.425272 7.2:+15555005 None:intergenic
CACCCTGCTTGTAACCCGTT+TGG 0.430827 7.2:-15555172 MS.gene52704:CDS
CAGAAGGAATTGAAGTGTTA+GGG 0.454064 7.2:-15555333 MS.gene52704:CDS
CTTCAGAAAATGAATCTCAA+TGG 0.456710 7.2:-15555708 MS.gene52704:CDS
AGATTGGCAATTGGCTTATG+TGG 0.475777 7.2:-15555068 MS.gene52704:CDS
TTTCCATGTGCTTATGAAGA+TGG 0.482162 7.2:-15555496 MS.gene52704:CDS
GGACCAAACGGGTTACAAGC+AGG 0.492003 7.2:+15555169 None:intergenic
ATAAGAACATATGTATTCAA+TGG 0.496984 7.2:+15555910 None:intergenic
TCCTAAAAGTCTTGTTTGTG+TGG 0.502096 7.2:-15555110 MS.gene52704:CDS
AAAGTTTATGTCTACATGGC+TGG 0.503081 7.2:-15555415 MS.gene52704:CDS
CATGTGCTTATGAAGATGGT+TGG 0.507644 7.2:-15555492 MS.gene52704:CDS
GGTTAATTACCGACGATCAC+CGG 0.514778 7.2:-15555527 MS.gene52704:CDS
ATGGTTGGAATGCACTCAAA+TGG 0.515042 7.2:-15555477 MS.gene52704:CDS
TGGCAATTGGCTTATGTGGA+TGG 0.532054 7.2:-15555064 MS.gene52704:CDS
TTGTAAAGCTGCTGTTGTAT+CGG 0.540342 7.2:-15555548 MS.gene52704:CDS
CAAGAAACTCTGCTAAATCT+CGG 0.546001 7.2:+15555833 None:intergenic
AGTCAACCTCAGTGAATCTA+GGG 0.546591 7.2:-15556347 MS.gene52704:intron
CCTGTCATAGTATTCTTCCA+TGG 0.550957 7.2:-15555640 MS.gene52704:CDS
GTTTCTTGACAGAAAAGTCC+CGG 0.552120 7.2:-15555818 MS.gene52704:CDS
TCGACCGGAATAGCATTTGC+CGG 0.555684 7.2:+15555799 None:intergenic
ATCGATACTCCGGTGATCGT+CGG 0.555832 7.2:+15555518 None:intergenic
CGACCGGAATAGCATTTGCC+GGG 0.556973 7.2:+15555800 None:intergenic
GACCAAACGGGTTACAAGCA+GGG 0.558028 7.2:+15555170 None:intergenic
CAAGAAAATGGCTTCAAAGT+GGG 0.561680 7.2:-15555447 MS.gene52704:CDS
GCAAATGCTATTCCGGTCGA+TGG 0.562535 7.2:-15555796 MS.gene52704:CDS
CCATGGAAGAATACTATGAC+AGG 0.571752 7.2:+15555640 None:intergenic
TAAACTTCTTTACCTTAAGG+AGG 0.574148 7.2:-15555017 MS.gene52704:CDS
AACAACTAACCAGACATGAC+TGG 0.578176 7.2:-15556379 None:intergenic
AATCTTCTAAGAAGAGCAGA+TGG 0.579373 7.2:-15555865 MS.gene52704:CDS
AATGAGAGAAGCTTCCGCCA+TGG 0.583093 7.2:+15555623 None:intergenic
CAACCATCTTCATAAGCACA+TGG 0.591192 7.2:+15555493 None:intergenic
TGGTTGGAATGCACTCAAAT+GGG 0.591765 7.2:-15555476 MS.gene52704:CDS
AAAGAAAGTTTATGTCTACA+TGG 0.593166 7.2:-15555419 MS.gene52704:CDS
TCATTTCTATTGCCTTATGG+AGG 0.599565 7.2:-15554960 MS.gene52704:CDS
TGTAGCAGTAAAAGCTTGTG+AGG 0.600327 7.2:-15555362 MS.gene52704:CDS
AATGAAAAGACTCCATCGAC+CGG 0.605436 7.2:+15555784 None:intergenic
GCACATGGAAATCGATACTC+CGG 0.608809 7.2:+15555508 None:intergenic
TCAAGAAAATGGCTTCAAAG+TGG 0.615492 7.2:-15555448 MS.gene52704:CDS
GATCATATCGAACGAAACAC+CGG 0.631025 7.2:-15555760 MS.gene52704:CDS
ATGGCTGGTGATAGTTCTGG+TGG 0.639593 7.2:-15555400 MS.gene52704:CDS
ATAAACACGATTGAATAGAC+CGG 0.640482 7.2:+15555741 None:intergenic
GTCATAGTATTCTTCCATGG+CGG 0.708680 7.2:-15555637 MS.gene52704:CDS
TCAGAAAATGAATCTCAATG+GGG 0.736042 7.2:-15555706 MS.gene52704:CDS
ATATTACCCTAGATTCACTG+AGG 0.743147 7.2:+15556341 None:intergenic
CAAACGGGTTACAAGCAGGG+TGG 0.789743 7.2:+15555173 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAAAACAAAAACTTTAGAT+TGG + chr7.2:15555344-15555363 None:intergenic 15.0%
!!! ATCATGTAATATTTTTTTTG+TGG - chr7.2:15555130-15555149 MS.gene52704:CDS 15.0%
!!! TCATGTAATATTTTTTTTGT+GGG - chr7.2:15555131-15555150 MS.gene52704:CDS 15.0%
!! AAAAGGGAAAAAAATCTTAA+AGG - chr7.2:15556147-15556166 MS.gene52704:intron 20.0%
!! AAGAAAAATGAAACAAATCT+TGG + chr7.2:15555291-15555310 None:intergenic 20.0%
!! AGAAAAATGAAACAAATCTT+GGG + chr7.2:15555290-15555309 None:intergenic 20.0%
!! ATAAGAACATATGTATTCAA+TGG + chr7.2:15555385-15555404 None:intergenic 20.0%
!! CAATAGAAATGATCATTATT+AGG + chr7.2:15556324-15556343 None:intergenic 20.0%
!!! AAAAACAAAACTTTCTAAGA+TGG + chr7.2:15554985-15555004 None:intergenic 20.0%
!!! TTAAGATTTTTTTCCCTTTT+TGG + chr7.2:15556147-15556166 None:intergenic 20.0%
! AAAACACCTATGTTAAAGTT+CGG + chr7.2:15555083-15555102 None:intergenic 25.0%
! AAAGAAAGTTTATGTCTACA+TGG - chr7.2:15555873-15555892 MS.gene52704:CDS 25.0%
! TCATTATGTGTCACAATAAT+TGG - chr7.2:15555248-15555267 MS.gene52704:CDS 25.0%
! TGTTAAACTTCTTTACCTTA+AGG - chr7.2:15556272-15556291 MS.gene52704:intron 25.0%
! TTCAGAAAATGAATCTCAAT+GGG - chr7.2:15555585-15555604 MS.gene52704:CDS 25.0%
!! AGTTTCTTCTTTTTATGTGT+TGG - chr7.2:15555191-15555210 MS.gene52704:CDS 25.0%
!! TCTATGATACATTTTGTAGA+AGG - chr7.2:15555710-15555729 MS.gene52704:CDS 25.0%
!!! GTAATATTTTTTTTGTGGGT+TGG - chr7.2:15555135-15555154 MS.gene52704:CDS 25.0%
!!! TTTGCTTTGTTTATGATGTT+GGG - chr7.2:15555044-15555063 MS.gene52704:CDS 25.0%
AAAGTTCCGAACTTTAACAT+AGG - chr7.2:15555074-15555093 MS.gene52704:CDS 30.0%
ACAATTTCTGTTGTGCTTAA+TGG + chr7.2:15555631-15555650 None:intergenic 30.0%
ATAAACACGATTGAATAGAC+CGG + chr7.2:15555554-15555573 None:intergenic 30.0%
ATTCTTCTTCATCCTTTGTT+TGG - chr7.2:15555985-15556004 MS.gene52704:intron 30.0%
CTTCAGAAAATGAATCTCAA+TGG - chr7.2:15555584-15555603 MS.gene52704:CDS 30.0%
TAAACTTCTTTACCTTAAGG+AGG - chr7.2:15556275-15556294 MS.gene52704:intron 30.0%
TCAGAAAATGAATCTCAATG+GGG - chr7.2:15555586-15555605 MS.gene52704:CDS 30.0%
TGATCATTTCTATTGCCTTA+TGG - chr7.2:15556329-15556348 MS.gene52704:intron 30.0%
TTAGATTACAAGATCGTGAT+TGG - chr7.2:15556058-15556077 MS.gene52704:intron 30.0%
! GGTTTCTTGTTATGGTAAAT+TGG - chr7.2:15555212-15555231 MS.gene52704:CDS 30.0%
! GTTTGGATCTTTTACAAGAT+TGG - chr7.2:15556208-15556227 MS.gene52704:intron 30.0%
! TCTTTTACAAGATTGGCAAT+TGG - chr7.2:15556215-15556234 MS.gene52704:intron 30.0%
!! GATTCATTTTCTGAAGATGA+TGG + chr7.2:15555580-15555599 None:intergenic 30.0%
!! GATTCTGAAATGAGATTAGA+TGG - chr7.2:15556024-15556043 MS.gene52704:intron 30.0%
!! GTTTGCTTTGTTTATGATGT+TGG - chr7.2:15555043-15555062 MS.gene52704:CDS 30.0%
!! TATGTGTTGGTTTCTTGTTA+TGG - chr7.2:15555204-15555223 MS.gene52704:CDS 30.0%
AAAGTTTATGTCTACATGGC+TGG - chr7.2:15555877-15555896 MS.gene52704:CDS 35.0%
AATGGGTGAAGTCAAGAAAA+TGG - chr7.2:15555833-15555852 MS.gene52704:CDS 35.0%
AGTTCTTGATTTCCTCCATA+AGG + chr7.2:15556347-15556366 None:intergenic 35.0%
ATATTACCCTAGATTCACTG+AGG + chr7.2:15554954-15554973 None:intergenic 35.0%
CAAGAAAATGGCTTCAAAGT+GGG - chr7.2:15555845-15555864 MS.gene52704:CDS 35.0%
CAAGAAACTCTGCTAAATCT+CGG + chr7.2:15555462-15555481 None:intergenic 35.0%
TACAAGATCGTGATTGGTAT+TGG - chr7.2:15556064-15556083 MS.gene52704:intron 35.0%
TCAAGAAAATGGCTTCAAAG+TGG - chr7.2:15555844-15555863 MS.gene52704:CDS 35.0%
TCATTTCTATTGCCTTATGG+AGG - chr7.2:15556332-15556351 MS.gene52704:intron 35.0%
TTGTAAAGCTGCTGTTGTAT+CGG - chr7.2:15555744-15555763 MS.gene52704:CDS 35.0%
TTTCCATGTGCTTATGAAGA+TGG - chr7.2:15555796-15555815 MS.gene52704:CDS 35.0%
! AATCTTCTAAGAAGAGCAGA+TGG - chr7.2:15555427-15555446 MS.gene52704:CDS 35.0%
! CAGAAGGAATTGAAGTGTTA+GGG - chr7.2:15555959-15555978 MS.gene52704:intron 35.0%
! GTGGATGGTTTAAGGAATTT+TGG - chr7.2:15556243-15556262 MS.gene52704:intron 35.0%
! TTTTCCCTTTTTGGACCAAA+CGG + chr7.2:15556138-15556157 None:intergenic 35.0%
!! GTGGGTTGGTTAGTTTAATT+TGG - chr7.2:15555149-15555168 MS.gene52704:CDS 35.0%
!! TCCTAAAAGTCTTGTTTGTG+TGG - chr7.2:15556182-15556201 MS.gene52704:intron 35.0%
!!! CTTTTTTCACCACCAAACAA+AGG + chr7.2:15556000-15556019 None:intergenic 35.0%
AACCAATAGTAGCCTCCTTA+AGG + chr7.2:15556290-15556309 None:intergenic 40.0%
AAGTCAACCTCAGTGAATCT+AGG - chr7.2:15554944-15554963 MS.gene52704:CDS 40.0%
AATGAAAAGACTCCATCGAC+CGG + chr7.2:15555511-15555530 None:intergenic 40.0%
AGTCAACCTCAGTGAATCTA+GGG - chr7.2:15554945-15554964 MS.gene52704:CDS 40.0%
ATGGTTGGAATGCACTCAAA+TGG - chr7.2:15555815-15555834 MS.gene52704:CDS 40.0%
CAACCATCTTCATAAGCACA+TGG + chr7.2:15555802-15555821 None:intergenic 40.0%
CATGTGCTTATGAAGATGGT+TGG - chr7.2:15555800-15555819 MS.gene52704:CDS 40.0%
CCATGGAAGAATACTATGAC+AGG + chr7.2:15555655-15555674 None:intergenic 40.0%
CCTGTCATAGTATTCTTCCA+TGG - chr7.2:15555652-15555671 MS.gene52704:CDS 40.0%
GATCATATCGAACGAAACAC+CGG - chr7.2:15555532-15555551 MS.gene52704:CDS 40.0%
GTCATAGTATTCTTCCATGG+CGG - chr7.2:15555655-15555674 MS.gene52704:CDS 40.0%
GTTTCTTGACAGAAAAGTCC+CGG - chr7.2:15555474-15555493 MS.gene52704:CDS 40.0%
TAACCCGTTTGGTCCAAAAA+GGG - chr7.2:15556131-15556150 MS.gene52704:intron 40.0%
TACCTTAAGGAGGCTACTAT+TGG - chr7.2:15556285-15556304 MS.gene52704:intron 40.0%
TGGCTTATGTGGATGGTTTA+AGG - chr7.2:15556235-15556254 MS.gene52704:intron 40.0%
TGGTTGGAATGCACTCAAAT+GGG - chr7.2:15555816-15555835 MS.gene52704:CDS 40.0%
TGTAGCAGTAAAAGCTTGTG+AGG - chr7.2:15555930-15555949 MS.gene52704:intron 40.0%
! AGATTGGCAATTGGCTTATG+TGG - chr7.2:15556224-15556243 MS.gene52704:intron 40.0%
! CTTCTTCATCCTTTGTTTGG+TGG - chr7.2:15555988-15556007 MS.gene52704:intron 40.0%
! GCAGAAGGAATTGAAGTGTT+AGG - chr7.2:15555958-15555977 MS.gene52704:intron 40.0%
! GCCACACAAACAAGACTTTT+AGG + chr7.2:15556186-15556205 None:intergenic 40.0%
! TTCACTGAGGTTGACTTCAT+TGG + chr7.2:15554941-15554960 None:intergenic 40.0%
! TTTCCCTTTTTGGACCAAAC+GGG + chr7.2:15556137-15556156 None:intergenic 40.0%
!! AAAAGTCTTGTTTGTGTGGC+TGG - chr7.2:15556186-15556205 MS.gene52704:intron 40.0%
!!! TGGAGAGCTTTTTTACCAGA+AGG - chr7.2:15556084-15556103 MS.gene52704:intron 40.0%
GCACATGGAAATCGATACTC+CGG + chr7.2:15555787-15555806 None:intergenic 45.0%
GCTTGTGAGGAAAAAGCAGA+AGG - chr7.2:15555943-15555962 MS.gene52704:intron 45.0%
GGTTAATTACCGACGATCAC+CGG - chr7.2:15555765-15555784 MS.gene52704:CDS 45.0%
GTAACCCGTTTGGTCCAAAA+AGG - chr7.2:15556130-15556149 MS.gene52704:intron 45.0%
TACATGGCTGGTGATAGTTC+TGG - chr7.2:15555889-15555908 MS.gene52704:CDS 45.0%
TGGTCTCTATCTTCACCTTC+TGG + chr7.2:15556102-15556121 None:intergenic 45.0%
! TCTTGTTTGTGTGGCTGGTT+TGG - chr7.2:15556191-15556210 MS.gene52704:intron 45.0%
! TGGCAATTGGCTTATGTGGA+TGG - chr7.2:15556228-15556247 MS.gene52704:intron 45.0%
AATGAGAGAAGCTTCCGCCA+TGG + chr7.2:15555672-15555691 None:intergenic 50.0%
AGTCCCGGCAAATGCTATTC+CGG - chr7.2:15555489-15555508 MS.gene52704:CDS 50.0%
ATCGATACTCCGGTGATCGT+CGG + chr7.2:15555777-15555796 None:intergenic 50.0%
GCAAATGCTATTCCGGTCGA+TGG - chr7.2:15555496-15555515 MS.gene52704:CDS 50.0%
TCGACCGGAATAGCATTTGC+CGG + chr7.2:15555496-15555515 None:intergenic 50.0%
!! ATGGCTGGTGATAGTTCTGG+TGG - chr7.2:15555892-15555911 MS.gene52704:CDS 50.0%
!! GACCAAACGGGTTACAAGCA+GGG + chr7.2:15556125-15556144 None:intergenic 50.0%
CACCCTGCTTGTAACCCGTT+TGG - chr7.2:15556120-15556139 MS.gene52704:intron 55.0%
CGACCGGAATAGCATTTGCC+GGG + chr7.2:15555495-15555514 None:intergenic 55.0%
!! CAAACGGGTTACAAGCAGGG+TGG + chr7.2:15556122-15556141 None:intergenic 55.0%
!! GGACCAAACGGGTTACAAGC+AGG + chr7.2:15556126-15556145 None:intergenic 55.0%


Chromosome Type Strat End Strand Name
chr7.2 gene 15554928 15556386 15554928 ID=MS.gene52704
chr7.2 mRNA 15554928 15556386 15554928 ID=MS.gene52704.t1;Parent=MS.gene52704
chr7.2 exon 15556348 15556386 15556348 ID=MS.gene52704.t1.exon1;Parent=MS.gene52704.t1
chr7.2 CDS 15556348 15556386 15556348 ID=cds.MS.gene52704.t1;Parent=MS.gene52704.t1
chr7.2 exon 15554928 15555941 15554928 ID=MS.gene52704.t1.exon2;Parent=MS.gene52704.t1
chr7.2 CDS 15554928 15555941 15554928 ID=cds.MS.gene52704.t1;Parent=MS.gene52704.t1
Gene Sequence

>MS.gene52704

ATGACTGGTACCAATGAAGTCAACCTCAGTGAATCTAGGGTAATATATCATCTTCCATCTTAGAAAGTTTTGTTTTTATTGTTTAAAGTTTGCATTTTTATGTTTTTGTTTTGTTGTTTGCTTTGTTTATGATGTTGGGTTTTGAAAAAGTTCCGAACTTTAACATAGGTGTTTTGTTCTTCTTGTTGTGATTTTTGTTAAGATCATGTAATATTTTTTTTGTGGGTTGGTTAGTTTAATTTGGTTTTTGTTTTCTACTTTCTAGTTTCTTCTTTTTATGTGTTGGTTTCTTGTTATGGTAAATTGGAAAGATTTGATTTTCATTATGTGTCACAATAATTGGAAATTTTTGTCTTTTACCCAAGATTTGTTTCATTTTTCTTTCTTCTGCAATGATTCAACACAAAAAAGAACCAATCTAAAGTTTTTGTTTTTTGTTTTGCAGAGTGTTGTTCCATTGAATACATATGTTCTTATCTCAAATTTCAAGCTTGCTTACAATCTTCTAAGAAGAGCAGATGGAACATTCAACCGAGATTTAGCAGAGTTTCTTGACAGAAAAGTCCCGGCAAATGCTATTCCGGTCGATGGAGTCTTTTCATTCGATCATATCGAACGAAACACCGGTCTATTCAATCGTGTTTATCTACCATCATCTTCAGAAAATGAATCTCAATGGGGTGTTAAAGATTTAGAGAAACCATTAAGCACAACAGAAATTGTTCCTGTCATAGTATTCTTCCATGGCGGAAGCTTCTCTCATTCTTCAGCAAACAGTGCTATCTATGATACATTTTGTAGAAGGTTAGTAACTGTTTGTAAAGCTGCTGTTGTATCGGTTAATTACCGACGATCACCGGAGTATCGATTTCCATGTGCTTATGAAGATGGTTGGAATGCACTCAAATGGGTGAAGTCAAGAAAATGGCTTCAAAGTGGGAAAGAAAAGAAAGTTTATGTCTACATGGCTGGTGATAGTTCTGGTGGAAACATTGTTCATCATGTAGCAGTAAAAGCTTGTGAGGAAAAAGCAGAAGGAATTGAAGTGTTAGGGAACATTCTTCTTCATCCTTTGTTTGGTGGTGAAAAAAGAACAGATTCTGAAATGAGATTAGATGGAAAGTACTTTGTTAGATTACAAGATCGTGATTGGTATTGGAGAGCTTTTTTACCAGAAGGTGAAGATAGAGACCACCCTGCTTGTAACCCGTTTGGTCCAAAAAGGGAAAAAAATCTTAAAGGACTTGATAAGTTTCCTAAAAGTCTTGTTTGTGTGGCTGGTTTGGATCTTTTACAAGATTGGCAATTGGCTTATGTGGATGGTTTAAGGAATTTTGGTCAAGATGTTAAACTTCTTTACCTTAAGGAGGCTACTATTGGTTTTTACTTCTTGCCTAATAATGATCATTTCTATTGCCTTATGGAGGAAATCAAGAACTTTGTTAATCCTAACTGTTAA
Protein sequence

>MS.gene52704.t1

MTGTNEVNLSESRSVVPLNTYVLISNFKLAYNLLRRADGTFNRDLAEFLDRKVPANAIPVDGVFSFDHIERNTGLFNRVYLPSSSENESQWGVKDLEKPLSTTEIVPVIVFFHGGSFSHSSANSAIYDTFCRRLVTVCKAAVVSVNYRRSPEYRFPCAYEDGWNALKWVKSRKWLQSGKEKKVYVYMAGDSSGGNIVHHVAVKACEEKAEGIEVLGNILLHPLFGGEKRTDSEMRLDGKYFVRLQDRDWYWRAFLPEGEDRDHPACNPFGPKREKNLKGLDKFPKSLVCVAGLDLLQDWQLAYVDGLRNFGQDVKLLYLKEATIGFYFLPNNDHFYCLMEEIKNFVNPNC