AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene042786

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene042786.t1 MTR_6g065270 92.690 342 21 1 1 338 1 342 0.0 660
MS.gene042786.t1 MTR_6g065370 80.781 333 64 0 6 338 8 340 0.0 574
MS.gene042786.t1 MTR_6g065400 79.279 333 69 0 6 338 8 340 0.0 567
MS.gene042786.t1 MTR_6g065120 78.144 334 72 1 6 338 9 342 0.0 560
MS.gene042786.t1 MTR_6g065340 81.381 333 46 1 6 338 19 335 0.0 540
MS.gene042786.t1 MTR_6g065110 68.923 325 101 0 8 332 11 335 7.02e-178 496
MS.gene042786.t1 MTR_6g065430 57.658 333 132 2 3 333 4 329 3.46e-143 408
MS.gene042786.t1 MTR_1g082210 38.209 335 200 3 2 332 10 341 1.69e-75 236
MS.gene042786.t1 MTR_7g093950 37.059 340 205 4 1 332 9 347 3.03e-74 233
MS.gene042786.t1 MTR_1g089310 37.389 337 202 3 1 332 9 341 3.18e-73 230
MS.gene042786.t1 MTR_1g089310 37.389 337 202 3 1 332 25 357 5.00e-73 230
MS.gene042786.t1 MTR_6g464280 37.226 274 158 5 30 296 24 290 1.57e-51 174
MS.gene042786.t1 MTR_8g035540 33.439 314 188 6 29 331 13 316 1.51e-47 163
MS.gene042786.t1 MTR_6g464510 36.232 276 158 8 29 296 27 292 5.82e-46 159
MS.gene042786.t1 MTR_8g035500 32.492 317 197 6 23 331 10 317 7.94e-46 159
MS.gene042786.t1 MTR_4g050140 31.529 314 193 5 29 333 17 317 1.10e-45 158
MS.gene042786.t1 MTR_7g406880 32.588 313 182 9 44 333 45 351 5.82e-45 157
MS.gene042786.t1 MTR_6g464320 34.752 282 170 5 22 296 17 291 1.75e-44 155
MS.gene042786.t1 MTR_8g035520 33.555 301 178 6 47 336 40 329 3.02e-44 155
MS.gene042786.t1 MTR_0007s0520 39.171 217 117 4 44 254 37 244 1.05e-43 153
MS.gene042786.t1 MTR_1g102160 37.269 271 143 10 29 285 23 280 1.37e-42 150
MS.gene042786.t1 MTR_1g012430 32.903 310 188 8 29 333 15 309 2.28e-42 149
MS.gene042786.t1 MTR_7g107040 31.973 294 179 5 53 336 39 321 1.83e-40 144
MS.gene042786.t1 MTR_3g012440 30.247 324 207 4 29 333 19 342 2.19e-40 145
MS.gene042786.t1 MTR_1g111280 33.003 303 172 11 45 331 51 338 2.34e-40 145
MS.gene042786.t1 MTR_1g102170 33.333 234 130 5 30 254 43 259 4.08e-40 144
MS.gene042786.t1 MTR_3g101420 32.558 301 171 9 47 333 34 316 2.65e-38 139
MS.gene042786.t1 MTR_6g464120 34.914 232 130 6 30 254 29 246 2.67e-37 140
MS.gene042786.t1 MTR_4g086540 30.921 304 176 7 36 334 33 307 5.57e-37 135
MS.gene042786.t1 MTR_4g086510 31.186 295 183 7 47 332 35 318 1.38e-35 132
MS.gene042786.t1 MTR_4g086480 31.525 295 177 9 47 331 39 318 1.54e-34 129
MS.gene042786.t1 MTR_7g056207 31.000 300 185 8 47 336 67 354 1.05e-33 127
MS.gene042786.t1 MTR_4g086470 30.976 297 180 9 47 333 38 319 2.07e-30 118
MS.gene042786.t1 MTR_6g022710 30.182 275 146 5 89 322 156 425 7.90e-30 118
MS.gene042786.t1 MTR_1g105020 28.378 296 184 8 51 331 40 322 6.32e-29 114
MS.gene042786.t1 MTR_3g450680 28.179 291 181 7 51 326 48 325 7.54e-27 108
MS.gene042786.t1 MTR_5g005900 28.354 328 192 10 29 333 21 328 7.48e-26 105
MS.gene042786.t1 MTR_5g005850 28.523 298 182 8 51 331 45 328 9.68e-26 105
MS.gene042786.t1 MTR_5g005920 26.769 325 201 11 29 333 25 332 2.92e-25 104
MS.gene042786.t1 MTR_8g040860 27.302 315 192 12 29 326 28 322 3.66e-24 101
MS.gene042786.t1 MTR_7g051020 30.625 320 191 9 29 333 24 327 7.96e-24 100
MS.gene042786.t1 MTR_6g065470 33.529 170 81 3 6 157 7 162 2.59e-22 92.0
MS.gene042786.t1 MTR_1g104930 29.154 319 194 11 29 333 24 324 1.31e-18 85.5
MS.gene042786.t1 MTR_1g104933 28.276 290 178 8 57 333 46 318 4.72e-17 80.9
MS.gene042786.t1 MTR_6g065480 53.448 58 26 1 231 288 1 57 2.72e-15 69.7
MS.gene042786.t1 MTR_0007s0480 38.462 91 50 2 169 254 1 90 5.43e-14 69.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene042786.t1 AT5G23530 54.360 344 135 5 2 337 3 332 1.36e-140 402
MS.gene042786.t1 AT5G27320 38.209 335 201 2 1 332 9 340 8.70e-79 244
MS.gene042786.t1 AT3G63010 35.942 345 209 5 1 338 9 348 5.31e-71 225
MS.gene042786.t1 AT3G05120 35.608 337 209 2 1 332 9 342 5.87e-71 224
MS.gene042786.t1 AT5G62180 35.144 313 188 10 30 334 21 326 2.20e-52 176
MS.gene042786.t1 AT5G16080 34.520 281 158 8 46 314 54 320 2.40e-45 158
MS.gene042786.t1 AT2G45600 32.881 295 174 6 56 337 38 321 2.78e-45 157
MS.gene042786.t1 AT5G06570 35.673 342 185 9 9 335 8 329 2.48e-44 155
MS.gene042786.t1 AT5G06570 35.673 342 185 9 9 335 8 329 2.48e-44 155
MS.gene042786.t1 AT5G06570 35.673 342 185 9 9 335 23 344 3.46e-44 155
MS.gene042786.t1 AT5G06570 35.673 342 185 9 9 335 23 344 3.46e-44 155
MS.gene042786.t1 AT2G45610 33.571 280 169 5 30 300 22 293 5.75e-43 151
MS.gene042786.t1 AT1G68620 31.359 287 176 7 54 332 57 330 6.59e-42 149
MS.gene042786.t1 AT1G47480 30.816 331 203 10 11 336 5 314 2.92e-41 146
MS.gene042786.t1 AT1G19190 31.861 317 184 14 30 333 18 315 8.12e-33 124
MS.gene042786.t1 AT3G48700 30.097 309 179 12 47 332 32 326 1.25e-31 121
MS.gene042786.t1 AT3G27320 27.895 380 181 9 23 322 37 403 1.14e-30 120
MS.gene042786.t1 AT5G14310 31.752 274 140 6 93 322 151 421 1.57e-30 120
MS.gene042786.t1 AT2G03550 31.879 298 175 9 47 333 32 312 5.37e-30 116
MS.gene042786.t1 AT3G27320 30.225 311 165 8 54 322 135 435 6.44e-30 119
MS.gene042786.t1 AT3G48690 29.568 301 186 9 47 332 32 321 1.45e-29 115
MS.gene042786.t1 AT1G49640 31.330 233 147 8 50 279 36 258 1.78e-26 107
MS.gene042786.t1 AT1G49660 28.664 307 195 10 35 331 22 314 9.93e-26 105
MS.gene042786.t1 AT1G49650 30.502 259 157 9 51 299 92 337 2.20e-21 94.0

Find 104 sgRNAs with CRISPR-Local

Find 124 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AGACAGTTCCGGTGCAAATT+TGG 0.242565 6.1:+61446929 MS.gene042786:CDS
GACAGGAAGGGAGGCTGTTT+TGG 0.273074 6.1:-61446664 None:intergenic
TGCGGAGGATTTGTCGGGTT+TGG 0.280062 6.1:+61447178 MS.gene042786:CDS
GGCACATCACCTTGCAGTTC+GGG 0.289097 6.1:+61446950 MS.gene042786:CDS
CTCTTTACTCCCACTGTTGC+CGG 0.296074 6.1:+61446615 MS.gene042786:CDS
GGCGTTAACGGTAATGTCTT+TGG 0.307568 6.1:-61446571 None:intergenic
GCAGTTCGGGTTTGTAAAGC+TGG 0.329901 6.1:+61446963 MS.gene042786:CDS
GGCAAAAGAGGTATTATGAT+TGG 0.376841 6.1:+61447252 MS.gene042786:CDS
GTGGTGGAAGGTGTTCTTAC+CGG 0.381206 6.1:+61447109 MS.gene042786:CDS
CTCCGGGAAATCCGGATTAT+CGG 0.399962 6.1:+61446987 MS.gene042786:CDS
GGGTTTGTAAAGCTGGGCTC+CGG 0.403578 6.1:+61446970 MS.gene042786:CDS
TTCCTTGCCGGAGACAGTTC+CGG 0.404209 6.1:+61446918 MS.gene042786:CDS
ATCATTTACTTCCACGGCGG+CGG 0.407976 6.1:+61446687 MS.gene042786:CDS
GATTTGATCCTTTGAATGAT+TGG 0.409071 6.1:+61447231 MS.gene042786:CDS
GCCGAATGCGGAGGATTTGT+CGG 0.409294 6.1:+61447172 MS.gene042786:CDS
TGGCACATCACCTTGCAGTT+CGG 0.409769 6.1:+61446949 MS.gene042786:CDS
ACTCAACACCTCTTCTTCCT+TGG 0.411552 6.1:+61446409 MS.gene042786:CDS
ACCCGATAATCCGGATTTCC+CGG 0.425872 6.1:-61446989 None:intergenic
TTTGGTGGAAACGCCGTTAA+CGG 0.430126 6.1:-61446553 None:intergenic
TCCGGGAAATCCGGATTATC+GGG 0.432121 6.1:+61446988 MS.gene042786:CDS
TGAGTAGATTCAGGCAGATC+AGG 0.435184 6.1:-61447344 None:intergenic
AAGCTGGGCTCCGGGAAATC+CGG 0.437572 6.1:+61446979 MS.gene042786:CDS
CCGAATGCGGAGGATTTGTC+GGG 0.438724 6.1:+61447173 MS.gene042786:CDS
TAAAAGTGAAAGAAGTGAAA+TGG 0.440270 6.1:-61446445 None:intergenic
CCCGACAAATCCTCCGCATT+CGG 0.445071 6.1:-61447173 None:intergenic
CCTAACGCCACTCCCGTTAA+CGG 0.446230 6.1:+61446540 MS.gene042786:CDS
TGGATACCAACCCGATAATC+CGG 0.449037 6.1:-61446998 None:intergenic
GTGTCAAAATGTTTCCTTGC+CGG 0.452264 6.1:+61446906 MS.gene042786:CDS
TTGGTGGAAACGCCGTTAAC+GGG 0.454826 6.1:-61446552 None:intergenic
CGCCGTTGGTGTCGATGGTA+AGG 0.455201 6.1:+61447078 MS.gene042786:CDS
GATATCGATGCTCCGGTGTA+AGG 0.456817 6.1:-61446806 None:intergenic
TATGATTGGTTAAAGAAATG+TGG 0.458980 6.1:+61447266 MS.gene042786:CDS
CTTTATGCCGTAGACTCTGC+AGG 0.467753 6.1:+61446748 MS.gene042786:CDS
CATTCACCGCGTCATGATCT+CGG 0.469524 6.1:-61447142 None:intergenic
TTAACGCCGAAAATAACGTT+TGG 0.477196 6.1:+61446586 MS.gene042786:CDS
GAGGCGGAGATTAAACTTGA+TGG 0.482240 6.1:+61447053 MS.gene042786:CDS
CCGTTAACGGGAGTGGCGTT+AGG 0.486028 6.1:-61446540 None:intergenic
CTTTGAATGATTGGCAAAAG+AGG 0.487397 6.1:+61447240 MS.gene042786:CDS
CCTGTCATCATTTACTTCCA+CGG 0.488327 6.1:+61446681 MS.gene042786:CDS
ATGATTGGTTAAAGAAATGT+GGG 0.488530 6.1:+61447267 MS.gene042786:CDS
TCATTTACTTCCACGGCGGC+GGG 0.488815 6.1:+61446688 MS.gene042786:CDS
AAGAAGTGAAATGGTAGCTC+TGG 0.489575 6.1:-61446436 None:intergenic
ATTTGCACCGGAACTGTCTC+CGG 0.491985 6.1:-61446925 None:intergenic
GTTAATGAGACGGCGATTGA+CGG 0.502882 6.1:-61446496 None:intergenic
CAGTTCGGGTTTGTAAAGCT+GGG 0.506658 6.1:+61446964 MS.gene042786:CDS
GGAAACGCCGTTAACGGGAG+TGG 0.511016 6.1:-61446547 None:intergenic
GGTTTGTAAAGCTGGGCTCC+GGG 0.520514 6.1:+61446971 MS.gene042786:CDS
CGATGGTAAGGACGGATTGG+TGG 0.521258 6.1:+61447090 MS.gene042786:CDS
AAATTTCCCTGCAGAGTCTA+CGG 0.521782 6.1:-61446755 None:intergenic
ATAATCAACTGAGTAGATTC+AGG 0.526163 6.1:-61447353 None:intergenic
TGGTAAGGACGGATTGGTGG+TGG 0.530541 6.1:+61447093 MS.gene042786:CDS
TGGATCGCCGTTGGTGTCGA+TGG 0.540273 6.1:+61447073 MS.gene042786:CDS
TAAAGCATCGTGGTAGATTG+AGG 0.544373 6.1:-61446730 None:intergenic
ATCGTGGTAGATTGAGGAAG+GGG 0.546376 6.1:-61446724 None:intergenic
TGATCTCGGTTCGATCCCTC+CGG 0.547999 6.1:-61447128 None:intergenic
GGCGCTTCTTCTCGCTCTAA+CGG 0.548606 6.1:+61446471 MS.gene042786:CDS
AAGGACGGATTGGTGGTGGA+AGG 0.550023 6.1:+61447097 MS.gene042786:CDS
GCCGGAGAAGTCATCGGAGA+TGG 0.551507 6.1:+61446633 MS.gene042786:CDS
ACCATCTCCGATGACTTCTC+CGG 0.551868 6.1:-61446634 None:intergenic
TGCGACGGATATCGATGCTC+CGG 0.555954 6.1:-61446813 None:intergenic
CCGTGGAAGTAAATGATGAC+AGG 0.560772 6.1:-61446681 None:intergenic
ATCAAGTTTAATCTCCGCCT+CGG 0.562819 6.1:-61447051 None:intergenic
CTGGCTTTCCAAGGAAGAAG+AGG 0.565695 6.1:-61446417 None:intergenic
GCATCGTGGTAGATTGAGGA+AGG 0.566906 6.1:-61446726 None:intergenic
TATCCGTCGCAATATGATGA+TGG 0.571005 6.1:+61446825 MS.gene042786:CDS
TGTCGATGGTAAGGACGGAT+TGG 0.572977 6.1:+61447087 MS.gene042786:CDS
TAAACTTGATGGATCGCCGT+TGG 0.573185 6.1:+61447064 MS.gene042786:CDS
GGAAATCCGGATTATCGGGT+TGG 0.574486 6.1:+61446992 MS.gene042786:CDS
GATGACTTCTCCGGCAACAG+TGG 0.577971 6.1:-61446625 None:intergenic
ATGACGCGGTGAATGTAAGC+GGG 0.586945 6.1:+61447150 MS.gene042786:CDS
ATGGTAGCTCTGGCTTTCCA+AGG 0.587238 6.1:-61446426 None:intergenic
TGGCGGTGAGGAACGGACCG+AGG 0.589279 6.1:+61447034 MS.gene042786:CDS
GGAAGTAAATGATGACAGGA+AGG 0.590018 6.1:-61446677 None:intergenic
GTTAACGGTAATGTCTTTGG+TGG 0.590282 6.1:-61446568 None:intergenic
CACCGGAACTGTCTCCGGCA+AGG 0.591057 6.1:-61446920 None:intergenic
GACTGAAGAAGTTAATGAGA+CGG 0.593190 6.1:-61446506 None:intergenic
GTGGAAGGTGTTCTTACCGG+AGG 0.596371 6.1:+61447112 MS.gene042786:CDS
ATGACTTCTCCGGCAACAGT+GGG 0.596379 6.1:-61446624 None:intergenic
TCAGTTGATTATGCAAGTCA+AGG 0.601932 6.1:+61447364 MS.gene042786:CDS
ATCGATGCTCCGGTGTAAGG+CGG 0.602490 6.1:-61446803 None:intergenic
ACTGTTGCCGGAGAAGTCAT+CGG 0.603429 6.1:+61446627 MS.gene042786:CDS
AACGGGAGTGGCGTTAGGTG+AGG 0.608356 6.1:-61446535 None:intergenic
TGTAAGCGGGCCGAATGCGG+AGG 0.609279 6.1:+61447163 MS.gene042786:CDS
GAAAACTGAACCCGCCGCCG+TGG 0.611082 6.1:-61446698 None:intergenic
GTGATGTGCCAAATTTGCAC+CGG 0.614788 6.1:-61446937 None:intergenic
GAATGTAAGCGGGCCGAATG+CGG 0.618920 6.1:+61447160 MS.gene042786:CDS
GTCCTTACCATCGACACCAA+CGG 0.621799 6.1:-61447080 None:intergenic
TGGAAGGTGTTCTTACCGGA+GGG 0.627234 6.1:+61447113 MS.gene042786:CDS
GGAGAAGTCATCGGAGATGG+TGG 0.629162 6.1:+61446636 MS.gene042786:CDS
GTTGGTGTCGATGGTAAGGA+CGG 0.629245 6.1:+61447082 MS.gene042786:CDS
GTAAATGATGACAGGAAGGG+AGG 0.632046 6.1:-61446673 None:intergenic
TGTCAACTACCGCCTTACAC+CGG 0.636801 6.1:+61446794 MS.gene042786:CDS
CATCGTGGTAGATTGAGGAA+GGG 0.643584 6.1:-61446725 None:intergenic
CTTTACAAACCCGAACTGCA+AGG 0.652824 6.1:-61446959 None:intergenic
GAAGTAAATGATGACAGGAA+GGG 0.653090 6.1:-61446676 None:intergenic
TCTCCATCATCATATTGCGA+CGG 0.653123 6.1:-61446828 None:intergenic
TTTATGCCGTAGACTCTGCA+GGG 0.653194 6.1:+61446749 MS.gene042786:CDS
GTCGCAATATGATGATGGAG+AGG 0.653832 6.1:+61446830 MS.gene042786:CDS
CATGACGCGGTGAATGTAAG+CGG 0.656915 6.1:+61447149 MS.gene042786:CDS
GTTGATTGAATATCCAAACA+TGG 0.659983 6.1:+61447301 MS.gene042786:CDS
CGGTGAGGAACGGACCGAGG+CGG 0.670710 6.1:+61447037 MS.gene042786:CDS
GTCATCATTTACTTCCACGG+CGG 0.732442 6.1:+61446684 MS.gene042786:CDS
ATCGAACCGAGATCATGACG+CGG 0.753530 6.1:+61447136 MS.gene042786:CDS
GTCTACGGCATAAAGCATCG+TGG 0.766027 6.1:-61446740 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
! TAAAAAACATGAACCATGTT+TGG - chr6.1:61447317-61447336 None:intergenic 25.0%
! TAAAAGTGAAAGAAGTGAAA+TGG - chr6.1:61446448-61446467 None:intergenic 25.0%
!! ATGATTGGTTAAAGAAATGT+GGG + chr6.1:61447267-61447286 MS.gene042786:CDS 25.0%
!! TATGATTGGTTAAAGAAATG+TGG + chr6.1:61447266-61447285 MS.gene042786:CDS 25.0%
!!! ATTTTTGGAAGAGAATAGAA+AGG + chr6.1:61446863-61446882 MS.gene042786:CDS 25.0%
!!! TCACTTCTTTCACTTTTATT+TGG + chr6.1:61446450-61446469 MS.gene042786:CDS 25.0%
ATAATCAACTGAGTAGATTC+AGG - chr6.1:61447356-61447375 None:intergenic 30.0%
GATTTGATCCTTTGAATGAT+TGG + chr6.1:61447231-61447250 MS.gene042786:CDS 30.0%
GTTGATTGAATATCCAAACA+TGG + chr6.1:61447301-61447320 MS.gene042786:CDS 30.0%
! AGAGAATAGAAAGGTTTTAC+CGG + chr6.1:61446872-61446891 MS.gene042786:CDS 30.0%
!! ACGAAACCAAACGTTATTTT+CGG - chr6.1:61446595-61446614 None:intergenic 30.0%
CCAATAAAAACAAGCGTATC+CGG - chr6.1:61447209-61447228 None:intergenic 35.0%
CTTTGAATGATTGGCAAAAG+AGG + chr6.1:61447240-61447259 MS.gene042786:CDS 35.0%
GAAGTAAATGATGACAGGAA+GGG - chr6.1:61446679-61446698 None:intergenic 35.0%
GACTGAAGAAGTTAATGAGA+CGG - chr6.1:61446509-61446528 None:intergenic 35.0%
TCAGTTGATTATGCAAGTCA+AGG + chr6.1:61447364-61447383 MS.gene042786:CDS 35.0%
TTAACGCCGAAAATAACGTT+TGG + chr6.1:61446586-61446605 MS.gene042786:CDS 35.0%
! CTCTTTTGCCAATCATTCAA+AGG - chr6.1:61447242-61447261 None:intergenic 35.0%
! TTTGACACATCAGCATTTTC+CGG - chr6.1:61446894-61446913 None:intergenic 35.0%
!! AACGTTATTTTCGGCGTTAA+CGG - chr6.1:61446586-61446605 None:intergenic 35.0%
!! GGCAAAAGAGGTATTATGAT+TGG + chr6.1:61447252-61447271 MS.gene042786:CDS 35.0%
!!! GATACGCTTGTTTTTATTGG+TGG + chr6.1:61447209-61447228 MS.gene042786:CDS 35.0%
AAATTTCCCTGCAGAGTCTA+CGG - chr6.1:61446758-61446777 None:intergenic 40.0%
AAGAAGTGAAATGGTAGCTC+TGG - chr6.1:61446439-61446458 None:intergenic 40.0%
ATCAAGTTTAATCTCCGCCT+CGG - chr6.1:61447054-61447073 None:intergenic 40.0%
CCTGTCATCATTTACTTCCA+CGG + chr6.1:61446681-61446700 MS.gene042786:CDS 40.0%
GGAAGTAAATGATGACAGGA+AGG - chr6.1:61446680-61446699 None:intergenic 40.0%
GTGTCAAAATGTTTCCTTGC+CGG + chr6.1:61446906-61446925 MS.gene042786:CDS 40.0%
GTTAACGGTAATGTCTTTGG+TGG - chr6.1:61446571-61446590 None:intergenic 40.0%
TATCCGTCGCAATATGATGA+TGG + chr6.1:61446825-61446844 MS.gene042786:CDS 40.0%
TCTCCATCATCATATTGCGA+CGG - chr6.1:61446831-61446850 None:intergenic 40.0%
! AGAGGCTGTGCTGAAATTTT+TGG + chr6.1:61446848-61446867 MS.gene042786:CDS 40.0%
! TTTGTCGGGTTTGGATTTTC+CGG + chr6.1:61447187-61447206 MS.gene042786:CDS 40.0%
!! TAAAGCATCGTGGTAGATTG+AGG - chr6.1:61446733-61446752 None:intergenic 40.0%
!!! CCGGATACGCTTGTTTTTAT+TGG + chr6.1:61447206-61447225 MS.gene042786:CDS 40.0%
!!! GTATCCATTCAGCCGTTTTT+TGG + chr6.1:61447014-61447033 MS.gene042786:CDS 40.0%
ACTCAACACCTCTTCTTCCT+TGG + chr6.1:61446409-61446428 MS.gene042786:CDS 45.0%
AGACAGTTCCGGTGCAAATT+TGG + chr6.1:61446929-61446948 MS.gene042786:CDS 45.0%
ATCGTGGTAGATTGAGGAAG+GGG - chr6.1:61446727-61446746 None:intergenic 45.0%
CATCGTGGTAGATTGAGGAA+GGG - chr6.1:61446728-61446747 None:intergenic 45.0%
CCGTGGAAGTAAATGATGAC+AGG - chr6.1:61446684-61446703 None:intergenic 45.0%
CTTTACAAACCCGAACTGCA+AGG - chr6.1:61446962-61446981 None:intergenic 45.0%
GAGGCGGAGATTAAACTTGA+TGG + chr6.1:61447053-61447072 MS.gene042786:CDS 45.0%
GGCGTTAACGGTAATGTCTT+TGG - chr6.1:61446574-61446593 None:intergenic 45.0%
GTAAATGATGACAGGAAGGG+AGG - chr6.1:61446676-61446695 None:intergenic 45.0%
GTCATCATTTACTTCCACGG+CGG + chr6.1:61446684-61446703 MS.gene042786:CDS 45.0%
GTGATGTGCCAAATTTGCAC+CGG - chr6.1:61446940-61446959 None:intergenic 45.0%
GTTAATGAGACGGCGATTGA+CGG - chr6.1:61446499-61446518 None:intergenic 45.0%
TGAGTAGATTCAGGCAGATC+AGG - chr6.1:61447347-61447366 None:intergenic 45.0%
TGGATACCAACCCGATAATC+CGG - chr6.1:61447001-61447020 None:intergenic 45.0%
TTTATGCCGTAGACTCTGCA+GGG + chr6.1:61446749-61446768 MS.gene042786:CDS 45.0%
TTTGGTGGAAACGCCGTTAA+CGG - chr6.1:61446556-61446575 None:intergenic 45.0%
! CAGTTCGGGTTTGTAAAGCT+GGG + chr6.1:61446964-61446983 MS.gene042786:CDS 45.0%
! TAAACTTGATGGATCGCCGT+TGG + chr6.1:61447064-61447083 MS.gene042786:CDS 45.0%
!! GTCGCAATATGATGATGGAG+AGG + chr6.1:61446830-61446849 MS.gene042786:CDS 45.0%
!!! TCCATTCAGCCGTTTTTTGG+CGG + chr6.1:61447017-61447036 MS.gene042786:CDS 45.0%
ACCATCTCCGATGACTTCTC+CGG - chr6.1:61446637-61446656 None:intergenic 50.0%
ACCCGATAATCCGGATTTCC+CGG - chr6.1:61446992-61447011 None:intergenic 50.0%
ACCGCCAAAAAACGGCTGAA+TGG - chr6.1:61447021-61447040 None:intergenic 50.0%
ACTGTTGCCGGAGAAGTCAT+CGG + chr6.1:61446627-61446646 MS.gene042786:CDS 50.0%
ATCATTTACTTCCACGGCGG+CGG + chr6.1:61446687-61446706 MS.gene042786:CDS 50.0%
ATCGAACCGAGATCATGACG+CGG + chr6.1:61447136-61447155 MS.gene042786:CDS 50.0%
ATGACGCGGTGAATGTAAGC+GGG + chr6.1:61447150-61447169 MS.gene042786:CDS 50.0%
ATGACTTCTCCGGCAACAGT+GGG - chr6.1:61446627-61446646 None:intergenic 50.0%
ATTTGCACCGGAACTGTCTC+CGG - chr6.1:61446928-61446947 None:intergenic 50.0%
CATGACGCGGTGAATGTAAG+CGG + chr6.1:61447149-61447168 MS.gene042786:CDS 50.0%
CATTCACCGCGTCATGATCT+CGG - chr6.1:61447145-61447164 None:intergenic 50.0%
CGTTCCTCACCGCCAAAAAA+CGG - chr6.1:61447029-61447048 None:intergenic 50.0%
CTCCGGGAAATCCGGATTAT+CGG + chr6.1:61446987-61447006 MS.gene042786:CDS 50.0%
CTCTTTACTCCCACTGTTGC+CGG + chr6.1:61446615-61446634 MS.gene042786:CDS 50.0%
CTTTATGCCGTAGACTCTGC+AGG + chr6.1:61446748-61446767 MS.gene042786:CDS 50.0%
GATATCGATGCTCCGGTGTA+AGG - chr6.1:61446809-61446828 None:intergenic 50.0%
GCATCGTGGTAGATTGAGGA+AGG - chr6.1:61446729-61446748 None:intergenic 50.0%
GGAAATCCGGATTATCGGGT+TGG + chr6.1:61446992-61447011 MS.gene042786:CDS 50.0%
GTCCTTACCATCGACACCAA+CGG - chr6.1:61447083-61447102 None:intergenic 50.0%
TCCGGGAAATCCGGATTATC+GGG + chr6.1:61446988-61447007 MS.gene042786:CDS 50.0%
TGGCACATCACCTTGCAGTT+CGG + chr6.1:61446949-61446968 MS.gene042786:CDS 50.0%
TGTCAACTACCGCCTTACAC+CGG + chr6.1:61446794-61446813 MS.gene042786:CDS 50.0%
TGTCGATGGTAAGGACGGAT+TGG + chr6.1:61447087-61447106 MS.gene042786:CDS 50.0%
TTGGTGGAAACGCCGTTAAC+GGG - chr6.1:61446555-61446574 None:intergenic 50.0%
! CTGGCTTTCCAAGGAAGAAG+AGG - chr6.1:61446420-61446439 None:intergenic 50.0%
! GCAGTTCGGGTTTGTAAAGC+TGG + chr6.1:61446963-61446982 MS.gene042786:CDS 50.0%
!! ATGGTAGCTCTGGCTTTCCA+AGG - chr6.1:61446429-61446448 None:intergenic 50.0%
!! GTCTACGGCATAAAGCATCG+TGG - chr6.1:61446743-61446762 None:intergenic 50.0%
!! GTGGTGGAAGGTGTTCTTAC+CGG + chr6.1:61447109-61447128 MS.gene042786:CDS 50.0%
!! GTTGGTGTCGATGGTAAGGA+CGG + chr6.1:61447082-61447101 MS.gene042786:CDS 50.0%
!! TGGAAGGTGTTCTTACCGGA+GGG + chr6.1:61447113-61447132 MS.gene042786:CDS 50.0%
!!! CGTTTTTTGGCGGTGAGGAA+CGG + chr6.1:61447027-61447046 MS.gene042786:CDS 50.0%
ATCGATGCTCCGGTGTAAGG+CGG - chr6.1:61446806-61446825 None:intergenic 55.0%
CCCGACAAATCCTCCGCATT+CGG - chr6.1:61447176-61447195 None:intergenic 55.0%
CCGAATGCGGAGGATTTGTC+GGG + chr6.1:61447173-61447192 MS.gene042786:CDS 55.0%
CCTAACGCCACTCCCGTTAA+CGG + chr6.1:61446540-61446559 MS.gene042786:CDS 55.0%
GAATGTAAGCGGGCCGAATG+CGG + chr6.1:61447160-61447179 MS.gene042786:CDS 55.0%
GATGACTTCTCCGGCAACAG+TGG - chr6.1:61446628-61446647 None:intergenic 55.0%
GCCGAATGCGGAGGATTTGT+CGG + chr6.1:61447172-61447191 MS.gene042786:CDS 55.0%
GGAGAAGTCATCGGAGATGG+TGG + chr6.1:61446636-61446655 MS.gene042786:CDS 55.0%
GGCACATCACCTTGCAGTTC+GGG + chr6.1:61446950-61446969 MS.gene042786:CDS 55.0%
GGCGCTTCTTCTCGCTCTAA+CGG + chr6.1:61446471-61446490 MS.gene042786:CDS 55.0%
GGGTTTGTAAAGCTGGGCTC+CGG + chr6.1:61446970-61446989 MS.gene042786:CDS 55.0%
GGTTTGTAAAGCTGGGCTCC+GGG + chr6.1:61446971-61446990 MS.gene042786:CDS 55.0%
TCATTTACTTCCACGGCGGC+GGG + chr6.1:61446688-61446707 MS.gene042786:CDS 55.0%
TGCGACGGATATCGATGCTC+CGG - chr6.1:61446816-61446835 None:intergenic 55.0%
TGCGGAGGATTTGTCGGGTT+TGG + chr6.1:61447178-61447197 MS.gene042786:CDS 55.0%
TTCCTTGCCGGAGACAGTTC+CGG + chr6.1:61446918-61446937 MS.gene042786:CDS 55.0%
! GACAGGAAGGGAGGCTGTTT+TGG - chr6.1:61446667-61446686 None:intergenic 55.0%
! TGATCTCGGTTCGATCCCTC+CGG - chr6.1:61447131-61447150 None:intergenic 55.0%
!! AAGGACGGATTGGTGGTGGA+AGG + chr6.1:61447097-61447116 MS.gene042786:CDS 55.0%
!! AGGAAGGGAGGCTGTTTTGG+TGG - chr6.1:61446664-61446683 None:intergenic 55.0%
!! CGATGGTAAGGACGGATTGG+TGG + chr6.1:61447090-61447109 MS.gene042786:CDS 55.0%
!! GTGGAAGGTGTTCTTACCGG+AGG + chr6.1:61447112-61447131 MS.gene042786:CDS 55.0%
!! TGGTAAGGACGGATTGGTGG+TGG + chr6.1:61447093-61447112 MS.gene042786:CDS 55.0%
!!! TCAGCCGTTTTTTGGCGGTG+AGG + chr6.1:61447022-61447041 MS.gene042786:CDS 55.0%
AACGGGAGTGGCGTTAGGTG+AGG - chr6.1:61446538-61446557 None:intergenic 60.0%
AAGCTGGGCTCCGGGAAATC+CGG + chr6.1:61446979-61446998 MS.gene042786:CDS 60.0%
CCGTTAACGGGAGTGGCGTT+AGG - chr6.1:61446543-61446562 None:intergenic 60.0%
GCCGGAGAAGTCATCGGAGA+TGG + chr6.1:61446633-61446652 MS.gene042786:CDS 60.0%
GGAAACGCCGTTAACGGGAG+TGG - chr6.1:61446550-61446569 None:intergenic 60.0%
!! CGCCGTTGGTGTCGATGGTA+AGG + chr6.1:61447078-61447097 MS.gene042786:CDS 60.0%
!! TGGATCGCCGTTGGTGTCGA+TGG + chr6.1:61447073-61447092 MS.gene042786:CDS 60.0%
CACCGGAACTGTCTCCGGCA+AGG - chr6.1:61446923-61446942 None:intergenic 65.0%
GAAAACTGAACCCGCCGCCG+TGG - chr6.1:61446701-61446720 None:intergenic 65.0%
TGTAAGCGGGCCGAATGCGG+AGG + chr6.1:61447163-61447182 MS.gene042786:CDS 65.0%
CGGTGAGGAACGGACCGAGG+CGG + chr6.1:61447037-61447056 MS.gene042786:CDS 70.0%
TGGCGGTGAGGAACGGACCG+AGG + chr6.1:61447034-61447053 MS.gene042786:CDS 70.0%


Chromosome Type Strat End Strand Name
chr6.1 gene 61446402 61447418 61446402 ID=MS.gene042786
chr6.1 mRNA 61446402 61447418 61446402 ID=MS.gene042786.t1;Parent=MS.gene042786
chr6.1 exon 61446402 61447418 61446402 ID=MS.gene042786.t1.exon1;Parent=MS.gene042786.t1
chr6.1 CDS 61446402 61447418 61446402 ID=cds.MS.gene042786.t1;Parent=MS.gene042786.t1
Gene Sequence

>MS.gene042786

ATGTCAGACTCAACACCTCTTCTTCCTTGGAAAGCCAGAGCTACCATTTCACTTCTTTCACTTTTATTTGGCGCTTCTTCTCGCTCTAACGGCACCGTCAATCGCCGTCTCATTAACTTCTTCAGTCTCAATGCCTCACCTAACGCCACTCCCGTTAACGGCGTTTCCACCAAAGACATTACCGTTAACGCCGAAAATAACGTTTGGTTTCGTCTCTTTACTCCCACTGTTGCCGGAGAAGTCATCGGAGATGGTGGTGCCACCAAAACAGCCTCCCTTCCTGTCATCATTTACTTCCACGGCGGCGGGTTCAGTTTTCTTTCCCCTTCCTCAATCTACCACGATGCTTTATGCCGTAGACTCTGCAGGGAAATTTTTGCTGTTGTCGTCTCTGTCAACTACCGCCTTACACCGGAGCATCGATATCCGTCGCAATATGATGATGGAGAGGCTGTGCTGAAATTTTTGGAAGAGAATAGAAAGGTTTTACCGGAAAATGCTGATGTGTCAAAATGTTTCCTTGCCGGAGACAGTTCCGGTGCAAATTTGGCACATCACCTTGCAGTTCGGGTTTGTAAAGCTGGGCTCCGGGAAATCCGGATTATCGGGTTGGTATCCATTCAGCCGTTTTTTGGCGGTGAGGAACGGACCGAGGCGGAGATTAAACTTGATGGATCGCCGTTGGTGTCGATGGTAAGGACGGATTGGTGGTGGAAGGTGTTCTTACCGGAGGGATCGAACCGAGATCATGACGCGGTGAATGTAAGCGGGCCGAATGCGGAGGATTTGTCGGGTTTGGATTTTCCGGATACGCTTGTTTTTATTGGTGGATTTGATCCTTTGAATGATTGGCAAAAGAGGTATTATGATTGGTTAAAGAAATGTGGGAAAAAAGCTGAGTTGATTGAATATCCAAACATGGTTCATGTTTTTTATGTTTTTCCTGATCTGCCTGAATCTACTCAGTTGATTATGCAAGTCAAGGAGTTTGTCAACAAAGTCTCTAGTTCTAAATGA
Protein sequence

>MS.gene042786.t1

MSDSTPLLPWKARATISLLSLLFGASSRSNGTVNRRLINFFSLNASPNATPVNGVSTKDITVNAENNVWFRLFTPTVAGEVIGDGGATKTASLPVIIYFHGGGFSFLSPSSIYHDALCRRLCREIFAVVVSVNYRLTPEHRYPSQYDDGEAVLKFLEENRKVLPENADVSKCFLAGDSSGANLAHHLAVRVCKAGLREIRIIGLVSIQPFFGGEERTEAEIKLDGSPLVSMVRTDWWWKVFLPEGSNRDHDAVNVSGPNAEDLSGLDFPDTLVFIGGFDPLNDWQKRYYDWLKKCGKKAELIEYPNMVHVFYVFPDLPESTQLIMQVKEFVNKVSSSK