AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene042787

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene042787.t1 MTR_6g065340 87.179 351 29 1 1 351 1 335 0.0 610
MS.gene042787.t1 MTR_6g065270 84.570 337 48 1 19 351 6 342 0.0 604
MS.gene042787.t1 MTR_6g065370 80.236 339 67 0 13 351 2 340 0.0 579
MS.gene042787.t1 MTR_6g065400 79.646 339 69 0 13 351 2 340 0.0 575
MS.gene042787.t1 MTR_6g065120 78.592 341 72 1 12 351 2 342 0.0 566
MS.gene042787.t1 MTR_6g065110 68.485 330 104 0 16 345 6 335 1.85e-178 498
MS.gene042787.t1 MTR_6g065430 59.215 331 126 2 18 346 6 329 5.19e-142 405
MS.gene042787.t1 MTR_1g082210 37.536 349 208 4 8 350 1 345 1.63e-78 244
MS.gene042787.t1 MTR_1g089310 37.429 350 210 3 1 345 12 357 3.12e-78 244
MS.gene042787.t1 MTR_1g089310 37.971 345 203 4 8 345 1 341 1.78e-77 241
MS.gene042787.t1 MTR_7g093950 36.494 348 210 5 8 345 1 347 7.57e-76 238
MS.gene042787.t1 MTR_6g464280 35.484 310 185 7 43 345 24 325 4.13e-53 178
MS.gene042787.t1 MTR_8g035540 33.439 314 188 6 42 344 13 316 7.23e-47 162
MS.gene042787.t1 MTR_8g035520 32.448 339 199 9 22 347 6 327 1.34e-46 161
MS.gene042787.t1 MTR_6g464510 32.927 328 202 8 25 345 11 327 1.65e-46 161
MS.gene042787.t1 MTR_7g406880 32.343 303 178 8 66 346 54 351 7.74e-46 160
MS.gene042787.t1 MTR_4g050140 32.982 285 173 4 71 346 42 317 1.89e-45 158
MS.gene042787.t1 MTR_0007s0520 38.605 215 117 4 59 267 39 244 2.11e-43 153
MS.gene042787.t1 MTR_6g464320 34.351 262 161 5 58 312 37 294 1.77e-42 150
MS.gene042787.t1 MTR_8g035500 31.629 313 191 8 43 344 17 317 2.05e-42 150
MS.gene042787.t1 MTR_1g102160 35.918 245 138 5 42 279 23 255 3.13e-42 150
MS.gene042787.t1 MTR_7g107040 32.082 293 178 5 66 348 39 320 5.89e-42 149
MS.gene042787.t1 MTR_1g102170 37.624 202 111 4 70 267 69 259 1.42e-41 148
MS.gene042787.t1 MTR_1g111280 31.894 301 176 9 59 344 52 338 9.83e-41 146
MS.gene042787.t1 MTR_1g012430 31.290 310 193 9 42 346 15 309 2.89e-40 144
MS.gene042787.t1 MTR_3g012440 30.744 309 200 3 52 346 34 342 5.39e-39 141
MS.gene042787.t1 MTR_6g464120 36.493 211 124 4 60 267 43 246 7.70e-38 142
MS.gene042787.t1 MTR_4g086540 30.492 305 178 8 49 348 33 308 1.94e-37 137
MS.gene042787.t1 MTR_4g086510 31.186 295 183 7 60 345 35 318 1.84e-36 134
MS.gene042787.t1 MTR_3g101420 30.333 300 179 7 60 346 34 316 3.55e-35 130
MS.gene042787.t1 MTR_4g086480 30.612 294 181 7 60 344 39 318 1.03e-34 129
MS.gene042787.t1 MTR_7g056207 31.000 300 186 7 60 350 67 354 1.30e-34 130
MS.gene042787.t1 MTR_4g086470 30.405 296 183 7 60 346 38 319 5.42e-30 117
MS.gene042787.t1 MTR_1g105020 28.041 296 185 8 64 344 40 322 4.33e-29 114
MS.gene042787.t1 MTR_6g022710 29.091 275 149 5 102 335 156 425 3.88e-28 114
MS.gene042787.t1 MTR_3g450680 27.241 290 185 6 64 339 48 325 2.76e-26 107
MS.gene042787.t1 MTR_5g005850 27.273 319 199 9 43 344 26 328 4.98e-26 106
MS.gene042787.t1 MTR_8g040860 26.000 300 192 8 57 339 36 322 6.65e-24 100
MS.gene042787.t1 MTR_6g065470 36.257 171 77 3 18 170 6 162 8.85e-24 96.3
MS.gene042787.t1 MTR_5g005900 26.531 294 191 7 68 346 45 328 5.76e-23 98.2
MS.gene042787.t1 MTR_5g005920 25.776 322 208 11 42 346 25 332 2.19e-22 96.7
MS.gene042787.t1 MTR_7g051020 30.033 303 184 8 59 346 38 327 2.46e-22 96.3
MS.gene042787.t1 MTR_1g104930 30.000 290 177 7 70 346 48 324 7.45e-20 89.4
MS.gene042787.t1 MTR_1g104933 28.276 290 178 8 70 346 46 318 3.14e-17 81.6
MS.gene042787.t1 MTR_6g065480 53.448 58 26 1 244 301 1 57 1.06e-14 68.2
MS.gene042787.t1 MTR_0007s0480 30.337 178 105 7 182 346 1 172 1.36e-14 71.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene042787.t1 AT5G23530 54.360 344 139 4 11 350 3 332 3.98e-136 391
MS.gene042787.t1 AT5G27320 37.609 343 206 3 8 345 1 340 1.05e-80 250
MS.gene042787.t1 AT3G63010 36.152 343 209 3 15 351 10 348 6.05e-73 230
MS.gene042787.t1 AT3G05120 34.783 345 215 3 8 345 1 342 4.44e-72 228
MS.gene042787.t1 AT5G62180 33.866 313 192 10 43 347 21 326 1.03e-49 169
MS.gene042787.t1 AT5G06570 36.897 290 161 6 71 348 50 329 6.42e-47 162
MS.gene042787.t1 AT5G06570 36.897 290 161 6 71 348 50 329 6.42e-47 162
MS.gene042787.t1 AT5G06570 36.897 290 161 6 71 348 65 344 8.59e-47 162
MS.gene042787.t1 AT5G06570 36.897 290 161 6 71 348 65 344 8.59e-47 162
MS.gene042787.t1 AT2G45600 31.973 294 174 7 70 350 39 319 1.31e-44 156
MS.gene042787.t1 AT5G16080 32.500 280 165 6 59 327 54 320 3.22e-44 155
MS.gene042787.t1 AT1G68620 32.056 287 174 7 67 345 57 330 2.46e-43 153
MS.gene042787.t1 AT1G47480 30.000 330 207 8 24 349 5 314 1.00e-42 150
MS.gene042787.t1 AT2G45610 31.847 314 192 8 43 345 22 324 2.08e-40 145
MS.gene042787.t1 AT3G48700 29.836 305 185 8 60 345 32 326 3.46e-34 128
MS.gene042787.t1 AT1G19190 30.063 316 191 11 43 346 18 315 4.30e-34 128
MS.gene042787.t1 AT2G03550 30.872 298 178 8 60 346 32 312 4.61e-32 122
MS.gene042787.t1 AT3G27320 26.611 357 182 7 58 335 48 403 1.45e-28 115
MS.gene042787.t1 AT5G14310 30.325 277 146 6 103 335 148 421 3.07e-28 114
MS.gene042787.t1 AT3G48690 30.038 263 163 5 60 311 32 284 4.12e-28 112
MS.gene042787.t1 AT3G27320 29.252 294 158 7 83 335 151 435 8.93e-27 110
MS.gene042787.t1 AT1G49640 33.854 192 118 4 48 238 23 206 2.44e-26 107
MS.gene042787.t1 AT1G49660 28.968 252 163 5 64 308 36 278 4.01e-25 103
MS.gene042787.t1 AT1G49650 29.804 255 162 6 64 311 92 336 1.55e-22 97.8

Find 98 sgRNAs with CRISPR-Local

Find 124 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CGCGGGGCTTCCAAGGAATA+AGG 0.269212 6.1:-61475913 None:intergenic
AGACAGTGCCGGTGCAAATT+TGG 0.273184 6.1:+61476423 MS.gene042787:CDS
GACGGGAAGGGAGGTTGTTT+TGG 0.283048 6.1:-61476158 None:intergenic
GGGGTTAACGGTAACGTCTT+TGG 0.289367 6.1:-61476065 None:intergenic
ATATTTGGATGAGAATAAAA+TGG 0.290955 6.1:+61476357 MS.gene042787:CDS
TGGCACATCACCTTGCAGTT+AGG 0.348786 6.1:+61476443 MS.gene042787:CDS
CAACAACAGCGGAGATTTGC+TGG 0.356181 6.1:-61476261 None:intergenic
GGTTTGATCCTTTAAATGAT+TGG 0.359729 6.1:+61476725 MS.gene042787:CDS
GGCAAAAGAGGTATTATGAT+TGG 0.376841 6.1:+61476746 MS.gene042787:CDS
TGAGTAGATTCAGGCAAATC+AGG 0.377775 6.1:-61476838 None:intergenic
GGCACATCACCTTGCAGTTA+GGG 0.384459 6.1:+61476444 MS.gene042787:CDS
ACCCGATAATCCGGATTTCC+TGG 0.387273 6.1:-61476483 None:intergenic
CCGTTAACGGGAGTGGCATT+AGG 0.400101 6.1:-61476034 None:intergenic
TCGATACCAACCCGATAATC+CGG 0.408280 6.1:-61476492 None:intergenic
GCCGAATGCGGAGGATTTGT+CGG 0.409294 6.1:+61476666 MS.gene042787:CDS
AACCTAAACCCCTTATTCCT+TGG 0.412248 6.1:+61475903 MS.gene042787:CDS
CTCCAGGAAATCCGGATTAT+CGG 0.413050 6.1:+61476481 MS.gene042787:CDS
TTCCAAGGAATAAGGGGTTT+AGG 0.417633 6.1:-61475905 None:intergenic
TTAACCCCGAAAATAATGTT+TGG 0.422380 6.1:+61476080 MS.gene042787:CDS
GTGTCAAAATGTTTCATTGC+TGG 0.422545 6.1:+61476400 MS.gene042787:CDS
GCGGGGCTTCCAAGGAATAA+GGG 0.428492 6.1:-61475912 None:intergenic
TTTGGTGGAAACGCCGTTAA+CGG 0.432566 6.1:-61476047 None:intergenic
CCTAATGCCACTCCCGTTAA+CGG 0.433533 6.1:+61476034 MS.gene042787:CDS
CCGAATGCGGAGGATTTGTC+GGG 0.438724 6.1:+61476667 MS.gene042787:CDS
CCCGACAAATCCTCCGCATT+CGG 0.445071 6.1:-61476667 None:intergenic
TCCAGGAAATCCGGATTATC+GGG 0.446897 6.1:+61476482 MS.gene042787:CDS
CTCTTTACACCCACTGTTGG+CGG 0.454181 6.1:+61476109 MS.gene042787:CDS
TTGGTGGAAACGCCGTTAAC+GGG 0.454826 6.1:-61476046 None:intergenic
CGCCGTTGGTGTCGATGGTA+AGG 0.455201 6.1:+61476572 MS.gene042787:CDS
TGGCATTAGGTGAGGATTTG+CGG 0.456562 6.1:-61476021 None:intergenic
CTTTAAATGATTGGCAAAAG+AGG 0.459493 6.1:+61476734 MS.gene042787:CDS
AAGCAGCGCTCCAGGAAATC+CGG 0.461952 6.1:+61476473 MS.gene042787:CDS
AATAATCAATCATTTAGAAC+AGG 0.469700 6.1:-61476899 None:intergenic
GAGGCGGAGATTAAACTTGA+TGG 0.470210 6.1:+61476547 MS.gene042787:CDS
ATAATCAATTGAGTAGATTC+AGG 0.472084 6.1:-61476847 None:intergenic
GGTTTGTAAAGCAGCGCTCC+AGG 0.475550 6.1:+61476465 MS.gene042787:CDS
GAGGGATCGAACCGGGATCA+TGG 0.487598 6.1:+61476625 MS.gene042787:CDS
TTTACCGGAGGGATCGAACC+GGG 0.500601 6.1:+61476618 MS.gene042787:CDS
TATGATTGGTTGAAGAAATG+TGG 0.503360 6.1:+61476760 MS.gene042787:CDS
ATGGTAGCGCGGGGCTTCCA+AGG 0.509543 6.1:-61475920 None:intergenic
GGAAACGCCGTTAACGGGAG+TGG 0.513035 6.1:-61476041 None:intergenic
CGATGGTAAGGACGGATTGG+TGG 0.521258 6.1:+61476584 MS.gene042787:CDS
TGCGACGGATAGCGATGCTC+TGG 0.525484 6.1:-61476307 None:intergenic
TGGTAAGGACGGATTGGTGG+TGG 0.530541 6.1:+61476587 MS.gene042787:CDS
CGTCTCTTTACACCCACTGT+TGG 0.533230 6.1:+61476106 MS.gene042787:CDS
AAGAAGTGAAATGGTAGCGC+GGG 0.536287 6.1:-61475930 None:intergenic
GAAGAAAATGACGACGGGAA+GGG 0.539782 6.1:-61476170 None:intergenic
TGGATCGCCGTTGGTGTCGA+TGG 0.540273 6.1:+61476567 MS.gene042787:CDS
GGAAGAAAATGACGACGGGA+AGG 0.541051 6.1:-61476171 None:intergenic
CATTAACAGCACCATGATCC+CGG 0.544471 6.1:-61476636 None:intergenic
AAGGACGGATTGGTGGTGGA+AGG 0.550023 6.1:+61476591 MS.gene042787:CDS
GGCGGAGAAGTCATCGGAGA+TGG 0.551507 6.1:+61476127 MS.gene042787:CDS
ATGATTGGTTGAAGAAATGT+GGG 0.557528 6.1:+61476761 MS.gene042787:CDS
GATGACTTCTCCGCCAACAG+TGG 0.558808 6.1:-61476119 None:intergenic
AAAAGCATCATAGTAGATTG+AGG 0.560272 6.1:-61476224 None:intergenic
GTTAACGGTAACGTCTTTGG+TGG 0.561453 6.1:-61476062 None:intergenic
TGATCCCGGTTCGATCCCTC+CGG 0.563601 6.1:-61476622 None:intergenic
TGGTGGGGAGGAACGGACTG+AGG 0.564345 6.1:+61476528 MS.gene042787:CDS
TTCATTGCTGGAGACAGTGC+CGG 0.566877 6.1:+61476412 MS.gene042787:CDS
TGTAAGCGGGCCGAATGCGG+AGG 0.569404 6.1:+61476657 MS.gene042787:CDS
TGTCGATGGTAAGGACGGAT+TGG 0.572977 6.1:+61476581 MS.gene042787:CDS
TAAACTTGATGGATCGCCGT+TGG 0.573185 6.1:+61476558 MS.gene042787:CDS
GGAAATCCGGATTATCGGGT+TGG 0.574144 6.1:+61476486 MS.gene042787:CDS
CGGGGCTTCCAAGGAATAAG+GGG 0.580014 6.1:-61475911 None:intergenic
ATGGTGCTGTTAATGTAAGC+GGG 0.580275 6.1:+61476644 MS.gene042787:CDS
TGGGGAGGAACGGACTGAGG+CGG 0.585654 6.1:+61476531 MS.gene042787:CDS
TCAATTGATTATGCAAGTCA+AGG 0.586254 6.1:+61476858 MS.gene042787:CDS
ATGACTTCTCCGCCAACAGT+GGG 0.591641 6.1:-61476118 None:intergenic
GCATCATAGTAGATTGAGGA+GGG 0.595871 6.1:-61476220 None:intergenic
CCGTGGAAGAAAATGACGAC+GGG 0.598794 6.1:-61476175 None:intergenic
AACGGGAGTGGCATTAGGTG+AGG 0.601408 6.1:-61476029 None:intergenic
CATGGTGCTGTTAATGTAAG+CGG 0.604475 6.1:+61476643 MS.gene042787:CDS
ACTGTTGGCGGAGAAGTCAT+CGG 0.604892 6.1:+61476121 MS.gene042787:CDS
GACGCTTGTTGTCGCTCTAA+CGG 0.606754 6.1:+61475965 MS.gene042787:CDS
AGCGATGCTCTGGTGTGAGG+CGG 0.610734 6.1:-61476297 None:intergenic
CAGCAAAATCATGATAGATG+AGG 0.613047 6.1:+61475847 None:intergenic
GTGATGTGCCAAATTTGCAC+CGG 0.614788 6.1:-61476431 None:intergenic
GAAAATGACGACGGGAAGGG+AGG 0.620487 6.1:-61476167 None:intergenic
GTCCTTACCATCGACACCAA+CGG 0.621799 6.1:-61476574 None:intergenic
GATAGCGATGCTCTGGTGTG+AGG 0.626155 6.1:-61476300 None:intergenic
GGAGAAGTCATCGGAGATGG+TGG 0.629162 6.1:+61476130 MS.gene042787:CDS
GTTGGTGTCGATGGTAAGGA+CGG 0.629245 6.1:+61476576 MS.gene042787:CDS
TCTCCGTCGTCGTATTGCGA+CGG 0.629386 6.1:-61476322 None:intergenic
CAACAGTGGGTGTAAAGAGA+CGG 0.629445 6.1:-61476105 None:intergenic
GTTGATTGAATATCCAAACA+TGG 0.630966 6.1:+61476795 MS.gene042787:CDS
CTTTACAAACCCTAACTGCA+AGG 0.644163 6.1:-61476453 None:intergenic
TAATGTAAGCGGGCCGAATG+CGG 0.645773 6.1:+61476654 MS.gene042787:CDS
GCAATACGACGACGGAGAGG+CGG 0.653238 6.1:+61476327 MS.gene042787:CDS
CATCATAGTAGATTGAGGAG+GGG 0.673790 6.1:-61476219 None:intergenic
AAAGAAGTGAAATGGTAGCG+CGG 0.678287 6.1:-61475931 None:intergenic
GTCGCAATACGACGACGGAG+AGG 0.678768 6.1:+61476324 MS.gene042787:CDS
AGCATCATAGTAGATTGAGG+AGG 0.682743 6.1:-61476221 None:intergenic
ACCGTGGAAGAAAATGACGA+CGG 0.693683 6.1:-61476176 None:intergenic
AGAAGTGAAATGGTAGCGCG+GGG 0.693711 6.1:-61475929 None:intergenic
TGAAGAAGTTAAAGAGACGA+CGG 0.697225 6.1:-61475997 None:intergenic
TATCCGTCGCAATACGACGA+CGG 0.702682 6.1:+61476319 MS.gene042787:CDS
GATAGTTGAAGCCACCACCG+TGG 0.715381 6.1:-61476192 None:intergenic
GTTGACAGAGACAACAACAG+CGG 0.758726 6.1:-61476272 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATATTTGGATGAGAATAAAA+TGG + chr6.1:61476357-61476376 MS.gene042787:CDS 20.0%
!! TAAAAATGAAAGAAGTGAAA+TGG - chr6.1:61475942-61475961 None:intergenic 20.0%
! ATAATCAATTGAGTAGATTC+AGG - chr6.1:61476850-61476869 None:intergenic 25.0%
!!! TGAGAATAAAATGGTTTTAC+CGG + chr6.1:61476366-61476385 MS.gene042787:CDS 25.0%
CCAATAAAAACAAGCGTATT+CGG - chr6.1:61476703-61476722 None:intergenic 30.0%
CTTTAAATGATTGGCAAAAG+AGG + chr6.1:61476734-61476753 MS.gene042787:CDS 30.0%
GGTTTGATCCTTTAAATGAT+TGG + chr6.1:61476725-61476744 MS.gene042787:CDS 30.0%
GTTGATTGAATATCCAAACA+TGG + chr6.1:61476795-61476814 MS.gene042787:CDS 30.0%
TCAATTGATTATGCAAGTCA+AGG + chr6.1:61476858-61476877 MS.gene042787:CDS 30.0%
TTAACCCCGAAAATAATGTT+TGG + chr6.1:61476080-61476099 MS.gene042787:CDS 30.0%
! ACGGAACCAAACATTATTTT+CGG - chr6.1:61476089-61476108 None:intergenic 30.0%
! ATGATTGGTTGAAGAAATGT+GGG + chr6.1:61476761-61476780 MS.gene042787:CDS 30.0%
! CTCTTTTGCCAATCATTTAA+AGG - chr6.1:61476736-61476755 None:intergenic 30.0%
! TAAAAAGCATGAACCATGTT+TGG - chr6.1:61476811-61476830 None:intergenic 30.0%
! TATGATTGGTTGAAGAAATG+TGG + chr6.1:61476760-61476779 MS.gene042787:CDS 30.0%
!! AAAAGCATCATAGTAGATTG+AGG - chr6.1:61476227-61476246 None:intergenic 30.0%
!! AACATTATTTTCGGGGTTAA+CGG - chr6.1:61476080-61476099 None:intergenic 30.0%
!!! AATACGCTTGTTTTTATTGG+TGG + chr6.1:61476703-61476722 MS.gene042787:CDS 30.0%
!!! ATACGCTTGTTTTTATTGGT+GGG + chr6.1:61476704-61476723 MS.gene042787:CDS 30.0%
GTGTCAAAATGTTTCATTGC+TGG + chr6.1:61476400-61476419 MS.gene042787:CDS 35.0%
TGAAGAAGTTAAAGAGACGA+CGG - chr6.1:61476000-61476019 None:intergenic 35.0%
! CGGAACCAAACATTATTTTC+GGG - chr6.1:61476088-61476107 None:intergenic 35.0%
! GGAACCAAACATTATTTTCG+GGG - chr6.1:61476087-61476106 None:intergenic 35.0%
! TTTGACACATCAGCATTTTC+CGG - chr6.1:61476388-61476407 None:intergenic 35.0%
!! GGCAAAAGAGGTATTATGAT+TGG + chr6.1:61476746-61476765 MS.gene042787:CDS 35.0%
!!! AGAGGCGGTTTTGAAATATT+TGG + chr6.1:61476342-61476361 MS.gene042787:CDS 35.0%
!!! CCGAATACGCTTGTTTTTAT+TGG + chr6.1:61476700-61476719 MS.gene042787:CDS 35.0%
!!! GTATCGATTCAGCCTTTTTT+TGG + chr6.1:61476508-61476527 MS.gene042787:CDS 35.0%
AACCTAAACCCCTTATTCCT+TGG + chr6.1:61475903-61475922 MS.gene042787:CDS 40.0%
AGCATCATAGTAGATTGAGG+AGG - chr6.1:61476224-61476243 None:intergenic 40.0%
CATCATAGTAGATTGAGGAG+GGG - chr6.1:61476222-61476241 None:intergenic 40.0%
CTTTACAAACCCTAACTGCA+AGG - chr6.1:61476456-61476475 None:intergenic 40.0%
GCATCATAGTAGATTGAGGA+GGG - chr6.1:61476223-61476242 None:intergenic 40.0%
TGAGTAGATTCAGGCAAATC+AGG - chr6.1:61476841-61476860 None:intergenic 40.0%
TTCCAAGGAATAAGGGGTTT+AGG - chr6.1:61475908-61475927 None:intergenic 40.0%
! AAAGAAGTGAAATGGTAGCG+CGG - chr6.1:61475934-61475953 None:intergenic 40.0%
!! ATGGTGCTGTTAATGTAAGC+GGG + chr6.1:61476644-61476663 MS.gene042787:CDS 40.0%
!! CATGGTGCTGTTAATGTAAG+CGG + chr6.1:61476643-61476662 MS.gene042787:CDS 40.0%
!!! CGATTCAGCCTTTTTTTGGT+GGG + chr6.1:61476512-61476531 MS.gene042787:CDS 40.0%
!!! GATTCAGCCTTTTTTTGGTG+GGG + chr6.1:61476513-61476532 MS.gene042787:CDS 40.0%
!!! TCGATTCAGCCTTTTTTTGG+TGG + chr6.1:61476511-61476530 MS.gene042787:CDS 40.0%
ACCGTGGAAGAAAATGACGA+CGG - chr6.1:61476179-61476198 None:intergenic 45.0%
CAACAGTGGGTGTAAAGAGA+CGG - chr6.1:61476108-61476127 None:intergenic 45.0%
CATTAACAGCACCATGATCC+CGG - chr6.1:61476639-61476658 None:intergenic 45.0%
CTCCAGGAAATCCGGATTAT+CGG + chr6.1:61476481-61476500 MS.gene042787:CDS 45.0%
GAAGAAAATGACGACGGGAA+GGG - chr6.1:61476173-61476192 None:intergenic 45.0%
GAGGCGGAGATTAAACTTGA+TGG + chr6.1:61476547-61476566 MS.gene042787:CDS 45.0%
GTGATGTGCCAAATTTGCAC+CGG - chr6.1:61476434-61476453 None:intergenic 45.0%
GTTAACGGTAACGTCTTTGG+TGG - chr6.1:61476065-61476084 None:intergenic 45.0%
GTTGACAGAGACAACAACAG+CGG - chr6.1:61476275-61476294 None:intergenic 45.0%
TCCAGGAAATCCGGATTATC+GGG + chr6.1:61476482-61476501 MS.gene042787:CDS 45.0%
TCGATACCAACCCGATAATC+CGG - chr6.1:61476495-61476514 None:intergenic 45.0%
TGGCATTAGGTGAGGATTTG+CGG - chr6.1:61476024-61476043 None:intergenic 45.0%
TTTGGTGGAAACGCCGTTAA+CGG - chr6.1:61476050-61476069 None:intergenic 45.0%
! AAGAAGTGAAATGGTAGCGC+GGG - chr6.1:61475933-61475952 None:intergenic 45.0%
! TAAACTTGATGGATCGCCGT+TGG + chr6.1:61476558-61476577 MS.gene042787:CDS 45.0%
!!! CTTTTTTTGGTGGGGAGGAA+CGG + chr6.1:61476521-61476540 MS.gene042787:CDS 45.0%
!!! GTGGTGGAAGGTGTTTTTAC+CGG + chr6.1:61476603-61476622 MS.gene042787:CDS 45.0%
!!! TGGAAGGTGTTTTTACCGGA+GGG + chr6.1:61476607-61476626 MS.gene042787:CDS 45.0%
ACCCGATAATCCGGATTTCC+TGG - chr6.1:61476486-61476505 None:intergenic 50.0%
ACTGTTGGCGGAGAAGTCAT+CGG + chr6.1:61476121-61476140 MS.gene042787:CDS 50.0%
ATGACTTCTCCGCCAACAGT+GGG - chr6.1:61476121-61476140 None:intergenic 50.0%
CAACAACAGCGGAGATTTGC+TGG - chr6.1:61476264-61476283 None:intergenic 50.0%
CCGTGGAAGAAAATGACGAC+GGG - chr6.1:61476178-61476197 None:intergenic 50.0%
CCTAATGCCACTCCCGTTAA+CGG + chr6.1:61476034-61476053 MS.gene042787:CDS 50.0%
CGTCTCTTTACACCCACTGT+TGG + chr6.1:61476106-61476125 MS.gene042787:CDS 50.0%
CGTTCCTCCCCACCAAAAAA+AGG - chr6.1:61476523-61476542 None:intergenic 50.0%
CTCTTTACACCCACTGTTGG+CGG + chr6.1:61476109-61476128 MS.gene042787:CDS 50.0%
GGAAATCCGGATTATCGGGT+TGG + chr6.1:61476486-61476505 MS.gene042787:CDS 50.0%
GGAAGAAAATGACGACGGGA+AGG - chr6.1:61476174-61476193 None:intergenic 50.0%
GGCACATCACCTTGCAGTTA+GGG + chr6.1:61476444-61476463 MS.gene042787:CDS 50.0%
GGGGTTAACGGTAACGTCTT+TGG - chr6.1:61476068-61476087 None:intergenic 50.0%
GTCCTTACCATCGACACCAA+CGG - chr6.1:61476577-61476596 None:intergenic 50.0%
TAATGTAAGCGGGCCGAATG+CGG + chr6.1:61476654-61476673 MS.gene042787:CDS 50.0%
TATCCGTCGCAATACGACGA+CGG + chr6.1:61476319-61476338 MS.gene042787:CDS 50.0%
TGGCACATCACCTTGCAGTT+AGG + chr6.1:61476443-61476462 MS.gene042787:CDS 50.0%
TGTCGATGGTAAGGACGGAT+TGG + chr6.1:61476581-61476600 MS.gene042787:CDS 50.0%
TTCATTGCTGGAGACAGTGC+CGG + chr6.1:61476412-61476431 MS.gene042787:CDS 50.0%
TTGGTGGAAACGCCGTTAAC+GGG - chr6.1:61476049-61476068 None:intergenic 50.0%
! AGAAGTGAAATGGTAGCGCG+GGG - chr6.1:61475932-61475951 None:intergenic 50.0%
! TTTTACCGGAGGGATCGAAC+CGG + chr6.1:61476617-61476636 MS.gene042787:CDS 50.0%
!! AGACAGTGCCGGTGCAAATT+TGG + chr6.1:61476423-61476442 MS.gene042787:CDS 50.0%
!! CCCGTCGTCATTTTCTTCCA+CGG + chr6.1:61476175-61476194 MS.gene042787:CDS 50.0%
!! GACGCTTGTTGTCGCTCTAA+CGG + chr6.1:61475965-61475984 MS.gene042787:CDS 50.0%
!! GTCATTTTCTTCCACGGTGG+TGG + chr6.1:61476181-61476200 MS.gene042787:CDS 50.0%
!! GTCGTCATTTTCTTCCACGG+TGG + chr6.1:61476178-61476197 MS.gene042787:CDS 50.0%
!! GTTGGTGTCGATGGTAAGGA+CGG + chr6.1:61476576-61476595 MS.gene042787:CDS 50.0%
!!! GTGGAAGGTGTTTTTACCGG+AGG + chr6.1:61476606-61476625 MS.gene042787:CDS 50.0%
!!! TCAGCCTTTTTTTGGTGGGG+AGG + chr6.1:61476516-61476535 MS.gene042787:CDS 50.0%
AACGGGAGTGGCATTAGGTG+AGG - chr6.1:61476032-61476051 None:intergenic 55.0%
AAGCAGCGCTCCAGGAAATC+CGG + chr6.1:61476473-61476492 MS.gene042787:CDS 55.0%
CCCGACAAATCCTCCGCATT+CGG - chr6.1:61476670-61476689 None:intergenic 55.0%
CCGAATGCGGAGGATTTGTC+GGG + chr6.1:61476667-61476686 MS.gene042787:CDS 55.0%
CCGTTAACGGGAGTGGCATT+AGG - chr6.1:61476037-61476056 None:intergenic 55.0%
CGGGGCTTCCAAGGAATAAG+GGG - chr6.1:61475914-61475933 None:intergenic 55.0%
GAAAATGACGACGGGAAGGG+AGG - chr6.1:61476170-61476189 None:intergenic 55.0%
GATAGCGATGCTCTGGTGTG+AGG - chr6.1:61476303-61476322 None:intergenic 55.0%
GATAGTTGAAGCCACCACCG+TGG - chr6.1:61476195-61476214 None:intergenic 55.0%
GATGACTTCTCCGCCAACAG+TGG - chr6.1:61476122-61476141 None:intergenic 55.0%
GCCGAATGCGGAGGATTTGT+CGG + chr6.1:61476666-61476685 MS.gene042787:CDS 55.0%
GCGGGGCTTCCAAGGAATAA+GGG - chr6.1:61475915-61475934 None:intergenic 55.0%
GGAGAAGTCATCGGAGATGG+TGG + chr6.1:61476130-61476149 MS.gene042787:CDS 55.0%
GGTTTGTAAAGCAGCGCTCC+AGG + chr6.1:61476465-61476484 MS.gene042787:CDS 55.0%
TCTCCGTCGTCGTATTGCGA+CGG - chr6.1:61476325-61476344 None:intergenic 55.0%
TTTACCGGAGGGATCGAACC+GGG + chr6.1:61476618-61476637 MS.gene042787:CDS 55.0%
! GACGGGAAGGGAGGTTGTTT+TGG - chr6.1:61476161-61476180 None:intergenic 55.0%
!! AAGGACGGATTGGTGGTGGA+AGG + chr6.1:61476591-61476610 MS.gene042787:CDS 55.0%
!! CGATGGTAAGGACGGATTGG+TGG + chr6.1:61476584-61476603 MS.gene042787:CDS 55.0%
!! TGGTAAGGACGGATTGGTGG+TGG + chr6.1:61476587-61476606 MS.gene042787:CDS 55.0%
AGCGATGCTCTGGTGTGAGG+CGG - chr6.1:61476300-61476319 None:intergenic 60.0%
CGCGGGGCTTCCAAGGAATA+AGG - chr6.1:61475916-61475935 None:intergenic 60.0%
GAGGGATCGAACCGGGATCA+TGG + chr6.1:61476625-61476644 MS.gene042787:CDS 60.0%
GCAATACGACGACGGAGAGG+CGG + chr6.1:61476327-61476346 MS.gene042787:CDS 60.0%
GGAAACGCCGTTAACGGGAG+TGG - chr6.1:61476044-61476063 None:intergenic 60.0%
GGCGGAGAAGTCATCGGAGA+TGG + chr6.1:61476127-61476146 MS.gene042787:CDS 60.0%
GTCGCAATACGACGACGGAG+AGG + chr6.1:61476324-61476343 MS.gene042787:CDS 60.0%
TGCGACGGATAGCGATGCTC+TGG - chr6.1:61476310-61476329 None:intergenic 60.0%
! TGATCCCGGTTCGATCCCTC+CGG - chr6.1:61476625-61476644 None:intergenic 60.0%
!! CGCCGTTGGTGTCGATGGTA+AGG + chr6.1:61476572-61476591 MS.gene042787:CDS 60.0%
!! TGGATCGCCGTTGGTGTCGA+TGG + chr6.1:61476567-61476586 MS.gene042787:CDS 60.0%
TGTAAGCGGGCCGAATGCGG+AGG + chr6.1:61476657-61476676 MS.gene042787:CDS 65.0%
! ATGGTAGCGCGGGGCTTCCA+AGG - chr6.1:61475923-61475942 None:intergenic 65.0%
!! TGGGGAGGAACGGACTGAGG+CGG + chr6.1:61476531-61476550 MS.gene042787:CDS 65.0%
!! TGGTGGGGAGGAACGGACTG+AGG + chr6.1:61476528-61476547 MS.gene042787:CDS 65.0%


Chromosome Type Strat End Strand Name
chr6.1 gene 61475857 61476912 61475857 ID=MS.gene042787
chr6.1 mRNA 61475857 61476912 61475857 ID=MS.gene042787.t1;Parent=MS.gene042787
chr6.1 exon 61475857 61476912 61475857 ID=MS.gene042787.t1.exon1;Parent=MS.gene042787.t1
chr6.1 CDS 61475857 61476912 61475857 ID=cds.MS.gene042787.t1;Parent=MS.gene042787.t1
Gene Sequence

>MS.gene042787

ATGATAGATGAGGACGACAGTATGTCACACTCAAACTCAACAAACAAACCTAAACCCCTTATTCCTTGGAAGCCCCGCGCTACCATTTCACTTCTTTCATTTTTAAACGACGCTTGTTGTCGCTCTAACGGCACATTCAACCGTCGTCTCTTTAACTTCTTCATCCGCAAATCCTCACCTAATGCCACTCCCGTTAACGGCGTTTCCACCAAAGACGTTACCGTTAACCCCGAAAATAATGTTTGGTTCCGTCTCTTTACACCCACTGTTGGCGGAGAAGTCATCGGAGATGGTGGTGCAACCAAAACAACCTCCCTTCCCGTCGTCATTTTCTTCCACGGTGGTGGCTTCAACTATCTTTGCCCCTCCTCAATCTACTATGATGCTTTTTGTCGTAGACTCTGCCAGCAAATCTCCGCTGTTGTTGTCTCTGTCAACTACCGCCTCACACCAGAGCATCGCTATCCGTCGCAATACGACGACGGAGAGGCGGTTTTGAAATATTTGGATGAGAATAAAATGGTTTTACCGGAAAATGCTGATGTGTCAAAATGTTTCATTGCTGGAGACAGTGCCGGTGCAAATTTGGCACATCACCTTGCAGTTAGGGTTTGTAAAGCAGCGCTCCAGGAAATCCGGATTATCGGGTTGGTATCGATTCAGCCTTTTTTTGGTGGGGAGGAACGGACTGAGGCGGAGATTAAACTTGATGGATCGCCGTTGGTGTCGATGGTAAGGACGGATTGGTGGTGGAAGGTGTTTTTACCGGAGGGATCGAACCGGGATCATGGTGCTGTTAATGTAAGCGGGCCGAATGCGGAGGATTTGTCGGGTTTGCATTATCCGAATACGCTTGTTTTTATTGGTGGGTTTGATCCTTTAAATGATTGGCAAAAGAGGTATTATGATTGGTTGAAGAAATGTGGGAAAAAGATTGAGTTGATTGAATATCCAAACATGGTTCATGCTTTTTATATTTTTCCTGATTTGCCTGAATCTACTCAATTGATTATGCAAGTCAAGGAGTTTGTCAACAAAGTCTCCTGTTCTAAATGA
Protein sequence

>MS.gene042787.t1

MIDEDDSMSHSNSTNKPKPLIPWKPRATISLLSFLNDACCRSNGTFNRRLFNFFIRKSSPNATPVNGVSTKDVTVNPENNVWFRLFTPTVGGEVIGDGGATKTTSLPVVIFFHGGGFNYLCPSSIYYDAFCRRLCQQISAVVVSVNYRLTPEHRYPSQYDDGEAVLKYLDENKMVLPENADVSKCFIAGDSAGANLAHHLAVRVCKAALQEIRIIGLVSIQPFFGGEERTEAEIKLDGSPLVSMVRTDWWWKVFLPEGSNRDHGAVNVSGPNAEDLSGLHYPNTLVFIGGFDPLNDWQKRYYDWLKKCGKKIELIEYPNMVHAFYIFPDLPESTQLIMQVKEFVNKVSCSK