Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene044439.t1 | XP_013457978.1 | 99 | 912 | 9 | 0 | 1 | 912 | 1 | 912 | 0.00E+00 | 1726.8 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene044439.t1 | P42730 | 86.2 | 913 | 119 | 4 | 1 | 912 | 1 | 907 | 0.0e+00 | 1526.5 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene044439.t1 | A0A072UQA8 | 99.0 | 912 | 9 | 0 | 1 | 912 | 1 | 912 | 0.0e+00 | 1726.8 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene044439.t1 | MTR_4g109450 | 99.342 | 912 | 6 | 0 | 1 | 912 | 1 | 912 | 0.0 | 1828 |
MS.gene044439.t1 | MTR_4g109450 | 99.387 | 816 | 5 | 0 | 1 | 816 | 1 | 816 | 0.0 | 1636 |
MS.gene044439.t1 | MTR_7g028970 | 87.390 | 912 | 109 | 2 | 1 | 912 | 1 | 906 | 0.0 | 1601 |
MS.gene044439.t1 | MTR_7g012820 | 51.554 | 869 | 393 | 9 | 1 | 853 | 83 | 939 | 0.0 | 872 |
MS.gene044439.t1 | MTR_7g012820 | 51.554 | 869 | 393 | 9 | 1 | 853 | 12 | 868 | 0.0 | 871 |
MS.gene044439.t1 | MTR_6g013660 | 51.557 | 867 | 396 | 8 | 1 | 853 | 79 | 935 | 0.0 | 867 |
MS.gene044439.t1 | MTR_3g106160 | 49.219 | 896 | 425 | 12 | 5 | 883 | 95 | 977 | 0.0 | 823 |
MS.gene044439.t1 | MTR_2g099075 | 72.117 | 477 | 123 | 3 | 400 | 875 | 4 | 471 | 0.0 | 672 |
MS.gene044439.t1 | MTR_8g100040 | 45.478 | 774 | 334 | 11 | 131 | 886 | 222 | 925 | 0.0 | 650 |
MS.gene044439.t1 | MTR_3g102830 | 46.205 | 751 | 325 | 10 | 126 | 858 | 218 | 907 | 0.0 | 644 |
MS.gene044439.t1 | MTR_3g498725 | 46.515 | 746 | 320 | 12 | 131 | 858 | 218 | 902 | 0.0 | 643 |
MS.gene044439.t1 | MTR_3g098310 | 43.855 | 716 | 324 | 12 | 162 | 860 | 296 | 950 | 0.0 | 565 |
MS.gene044439.t1 | MTR_2g006950 | 68.571 | 420 | 92 | 7 | 461 | 878 | 1 | 382 | 0.0 | 546 |
MS.gene044439.t1 | MTR_2g006950 | 71.774 | 248 | 50 | 3 | 657 | 901 | 365 | 595 | 3.01e-107 | 344 |
MS.gene044439.t1 | MTR_3g098310 | 45.389 | 553 | 235 | 10 | 162 | 707 | 296 | 788 | 7.60e-145 | 449 |
MS.gene044439.t1 | MTR_3g461000 | 45.697 | 337 | 178 | 3 | 534 | 867 | 427 | 761 | 5.14e-102 | 336 |
MS.gene044439.t1 | MTR_3g461000 | 35.109 | 413 | 253 | 7 | 4 | 404 | 3 | 412 | 6.33e-67 | 239 |
MS.gene044439.t1 | MTR_7g096480 | 73.256 | 172 | 22 | 2 | 716 | 887 | 96 | 243 | 1.72e-76 | 249 |
MS.gene044439.t1 | MTR_7g096480 | 53.906 | 128 | 26 | 1 | 530 | 657 | 1 | 95 | 5.44e-33 | 128 |
MS.gene044439.t1 | MTR_6g048860 | 48.810 | 168 | 83 | 2 | 127 | 292 | 99 | 265 | 6.88e-45 | 166 |
MS.gene044439.t1 | MTR_5g098360 | 77.895 | 95 | 20 | 1 | 558 | 652 | 74 | 167 | 5.63e-41 | 148 |
MS.gene044439.t1 | MTR_1614s0010 | 41.709 | 199 | 109 | 3 | 638 | 835 | 1 | 193 | 1.60e-31 | 122 |
MS.gene044439.t1 | MTR_1g076440 | 61.628 | 86 | 33 | 0 | 631 | 716 | 158 | 243 | 5.10e-30 | 121 |
MS.gene044439.t1 | MTR_1g057150 | 28.239 | 301 | 182 | 11 | 20 | 292 | 26 | 320 | 8.86e-22 | 102 |
MS.gene044439.t1 | MTR_1g090640 | 27.273 | 297 | 181 | 11 | 17 | 285 | 24 | 313 | 3.79e-17 | 87.0 |
MS.gene044439.t1 | MTR_4g129230 | 31.364 | 220 | 108 | 8 | 26 | 208 | 32 | 245 | 2.14e-14 | 78.2 |
MS.gene044439.t1 | MTR_2g038200 | 29.845 | 258 | 144 | 9 | 20 | 241 | 26 | 282 | 8.65e-14 | 76.3 |
MS.gene044439.t1 | MTR_5g071060 | 25.463 | 216 | 129 | 6 | 566 | 754 | 648 | 858 | 6.38e-11 | 67.0 |
MS.gene044439.t1 | MTR_5g071060 | 25.463 | 216 | 129 | 6 | 566 | 754 | 681 | 891 | 7.26e-11 | 67.0 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene044439.t1 | AT1G74310 | 86.696 | 902 | 113 | 4 | 1 | 901 | 1 | 896 | 0.0 | 1603 |
MS.gene044439.t1 | AT1G74310 | 87.990 | 816 | 95 | 1 | 1 | 816 | 1 | 813 | 0.0 | 1480 |
MS.gene044439.t1 | AT5G15450 | 50.579 | 864 | 408 | 8 | 1 | 853 | 77 | 932 | 0.0 | 858 |
MS.gene044439.t1 | AT4G14670 | 66.970 | 660 | 176 | 5 | 1 | 658 | 1 | 620 | 0.0 | 850 |
MS.gene044439.t1 | AT2G25140 | 49.542 | 874 | 415 | 8 | 1 | 859 | 83 | 945 | 0.0 | 840 |
MS.gene044439.t1 | AT5G50920 | 46.577 | 745 | 320 | 12 | 131 | 858 | 221 | 904 | 0.0 | 644 |
MS.gene044439.t1 | AT3G48870 | 45.845 | 746 | 325 | 9 | 131 | 858 | 210 | 894 | 0.0 | 632 |
MS.gene044439.t1 | AT3G48870 | 45.845 | 746 | 325 | 9 | 131 | 858 | 241 | 925 | 0.0 | 632 |
MS.gene044439.t1 | AT3G48870 | 45.845 | 746 | 325 | 9 | 131 | 858 | 241 | 925 | 0.0 | 632 |
MS.gene044439.t1 | AT3G48870 | 45.845 | 746 | 325 | 9 | 131 | 858 | 241 | 925 | 0.0 | 632 |
MS.gene044439.t1 | AT5G51070 | 38.735 | 901 | 435 | 19 | 4 | 851 | 81 | 917 | 0.0 | 559 |
MS.gene044439.t1 | AT4G14675 | 50.000 | 148 | 42 | 1 | 720 | 867 | 1 | 116 | 1.91e-42 | 152 |
MS.gene044439.t1 | AT3G45450 | 47.727 | 176 | 74 | 3 | 176 | 350 | 151 | 309 | 6.32e-41 | 154 |
MS.gene044439.t1 | AT3G52490 | 31.399 | 293 | 163 | 12 | 20 | 293 | 26 | 299 | 9.80e-23 | 105 |
MS.gene044439.t1 | AT5G57710 | 30.213 | 235 | 134 | 10 | 26 | 234 | 32 | 262 | 2.67e-15 | 81.3 |
MS.gene044439.t1 | AT1G07200 | 26.875 | 160 | 108 | 3 | 570 | 728 | 68 | 219 | 3.28e-11 | 67.0 |
Find 209 sgRNAs with CRISPR-Local
Find 250 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
CCAACCTTTCTTTCTCATTT+TGG | 0.103964 | 8.1:+16190706 | None:intergenic |
CATCTCTTGAGTGGACTTTC+AGG | 0.168367 | 8.1:-16190056 | MS.gene044439:CDS |
AAGAACAATCCTGTTCTTAT+TGG | 0.183649 | 8.1:-16192247 | MS.gene044439:CDS |
TTTCAAGCATTGAAGACTTA+TGG | 0.255904 | 8.1:-16192364 | MS.gene044439:CDS |
GGGAAGCTTGATCCTGTTAT+TGG | 0.264082 | 8.1:-16192319 | MS.gene044439:CDS |
TTCTTATTCCTTGGTCCAAC+TGG | 0.268223 | 8.1:-16190561 | MS.gene044439:CDS |
CTCTCTAGCCACCTTCTAAT+TGG | 0.271216 | 8.1:+16189662 | None:intergenic |
ATGAGATTCATCTTGTTCTT+GGG | 0.276920 | 8.1:-16192009 | MS.gene044439:CDS |
TCCAGTCGGTTCAACAATTC+TGG | 0.285531 | 8.1:+16189972 | None:intergenic |
GATGAGATTCATCTTGTTCT+TGG | 0.287438 | 8.1:-16192010 | MS.gene044439:CDS |
AAGCCGGTGTTGCTGTTTCT+AGG | 0.291735 | 8.1:-16192459 | MS.gene044439:CDS |
GGCTAACAACCTCGGCTATT+TGG | 0.297052 | 8.1:+16190760 | None:intergenic |
TAGGTTAATTGCTTTGGATA+TGG | 0.306154 | 8.1:-16192137 | MS.gene044439:CDS |
TCTTCGTCGCGTCCAATAAC+AGG | 0.320228 | 8.1:+16192307 | None:intergenic |
CAAGCAATTTCAAACGTTGC+TGG | 0.347559 | 8.1:-16192703 | MS.gene044439:CDS |
AGCTGTTGATCAGTTAATCT+TGG | 0.350267 | 8.1:-16192521 | MS.gene044439:CDS |
GGGATTGTTAATGCTGAAAC+TGG | 0.353298 | 8.1:-16189518 | MS.gene044439:CDS |
AAGGCAGAACTGTGGACTTT+AGG | 0.354025 | 8.1:-16190118 | MS.gene044439:CDS |
TTGTTTCTTGTGTAGGTGTA+TGG | 0.362917 | 8.1:-16189692 | MS.gene044439:intron |
TGGTTGCTGGTGCGAAGTAT+AGG | 0.370808 | 8.1:-16192108 | MS.gene044439:CDS |
AGGAAGTAAGAAGGCATTTC+AGG | 0.374785 | 8.1:-16189995 | MS.gene044439:CDS |
ACTGGTTCCTTCTTATTCCT+TGG | 0.375288 | 8.1:-16190570 | MS.gene044439:CDS |
TTGAGATCAAGAGCTGGTTT+AGG | 0.379830 | 8.1:-16190609 | MS.gene044439:CDS |
AGGTTAATTGCTTTGGATAT+GGG | 0.380520 | 8.1:-16192136 | MS.gene044439:CDS |
AGAGCTGCGGACCTGCGATA+TGG | 0.381156 | 8.1:-16190882 | MS.gene044439:CDS |
ATATCGCAGGTCCGCAGCTC+TGG | 0.381186 | 8.1:+16190884 | None:intergenic |
GAGGGGTAAAGATGGGAAAA+AGG | 0.388224 | 8.1:-16192413 | MS.gene044439:CDS |
GATATGGGAGCACTGGTTGC+TGG | 0.390282 | 8.1:-16192121 | MS.gene044439:CDS |
CTAGCAATCTTGCTGATGTT+AGG | 0.395088 | 8.1:-16192156 | MS.gene044439:CDS |
CTCAATTGCTCATGTGATAG+AGG | 0.400181 | 8.1:+16189930 | None:intergenic |
GGTTGCTGGTGCGAAGTATA+GGG | 0.400576 | 8.1:-16192107 | MS.gene044439:CDS |
CCTGTTCTTATTGGTGAGCC+TGG | 0.401053 | 8.1:-16192238 | MS.gene044439:CDS |
TGATGTTAGGTTAATTGCTT+TGG | 0.410605 | 8.1:-16192143 | MS.gene044439:CDS |
ATTCTTGAGGATTCTCAGAT+TGG | 0.411250 | 8.1:-16192496 | MS.gene044439:CDS |
ACCGAAAAGTGATGCTGTTC+AGG | 0.411960 | 8.1:-16189459 | MS.gene044439:CDS |
GCTGTTGATCAGTTAATCTT+GGG | 0.422333 | 8.1:-16192520 | MS.gene044439:CDS |
TAGAATTGATGCAAGGTGTA+AGG | 0.422834 | 8.1:+16192753 | None:intergenic |
GTGCTACCAGGCACTTCATC+TGG | 0.425997 | 8.1:+16192607 | None:intergenic |
AAGATGCAGCATTTGAAAGA+AGG | 0.427986 | 8.1:-16191868 | MS.gene044439:CDS |
CTTCTCCAAGTCTTGGATGA+TGG | 0.430205 | 8.1:-16190158 | MS.gene044439:CDS |
TGTGGCTGAACCTAGTGTTC+CGG | 0.430850 | 8.1:-16191831 | MS.gene044439:CDS |
CAGCAACGTTTGAAATTGCT+TGG | 0.431831 | 8.1:+16192704 | None:intergenic |
CACTCTGTATCAAGATTGAT+TGG | 0.432459 | 8.1:-16190441 | MS.gene044439:CDS |
TTCCTTGGTCCAACTGGTGT+TGG | 0.432663 | 8.1:-16190555 | MS.gene044439:CDS |
CGTGGACAGCTTCGATGTAT+TGG | 0.435873 | 8.1:-16191929 | MS.gene044439:CDS |
TCAAGATTGTCAATTTCCTC+AGG | 0.437119 | 8.1:+16191497 | None:intergenic |
TGCTTTGGATATGGGAGCAC+TGG | 0.439570 | 8.1:-16192128 | MS.gene044439:CDS |
ATTTGAAAGAAGGTTTCAAC+AGG | 0.441868 | 8.1:-16191858 | MS.gene044439:CDS |
ATTCATCTTGTTCTTGGGGC+TGG | 0.444791 | 8.1:-16192004 | MS.gene044439:CDS |
GTCAATTAACAGAAGCTGTA+AGG | 0.446297 | 8.1:-16190247 | MS.gene044439:CDS |
ATGCTCAGCACCAAGGTTAG+AGG | 0.449435 | 8.1:+16190076 | None:intergenic |
TTACATTGATGCTGGTCCTA+AGG | 0.450753 | 8.1:-16189576 | MS.gene044439:CDS |
AAAACAAACGAAGCACTTGC+TGG | 0.455382 | 8.1:-16192820 | MS.gene044439:CDS |
ACTAAATCAATCGCCTTGTC+AGG | 0.457433 | 8.1:+16191563 | None:intergenic |
GGAAGTTGATGATGATGAAA+TGG | 0.457919 | 8.1:-16189414 | MS.gene044439:CDS |
AAGGTTTCAACAGGTTTATG+TGG | 0.465704 | 8.1:-16191849 | MS.gene044439:CDS |
CACGAGCTAGCAATGACTTC+AGG | 0.466831 | 8.1:-16192793 | MS.gene044439:CDS |
TTCTCCAAGTCTTGGATGAT+GGG | 0.466986 | 8.1:-16190157 | MS.gene044439:CDS |
CTACAACGCTTGAGGAGTAT+AGG | 0.468012 | 8.1:-16191904 | MS.gene044439:CDS |
TGCTCGCGATCGAGTGATGC+AGG | 0.469134 | 8.1:-16190015 | MS.gene044439:CDS |
AGAGCTCATCTTTGCACTAC+AGG | 0.471282 | 8.1:-16190931 | MS.gene044439:CDS |
TTGTCTAGTCGGTACATAAC+CGG | 0.472293 | 8.1:-16191716 | MS.gene044439:intron |
AATCTTGAAGGTAGCACTGA+TGG | 0.474434 | 8.1:-16190828 | MS.gene044439:CDS |
AATTGACATGTCGGAGTACA+TGG | 0.475392 | 8.1:-16190469 | MS.gene044439:CDS |
AGGTATGTTGGACATGAAGA+AGG | 0.476815 | 8.1:-16190272 | MS.gene044439:CDS |
AAAGAAAGGTTGGTTGGACT+TGG | 0.479433 | 8.1:-16190696 | MS.gene044439:CDS |
TTGGCTCAGAGGATTGTTAG+AGG | 0.480511 | 8.1:-16192187 | MS.gene044439:CDS |
ATTCTGATTCAGATTCCAAA+TGG | 0.480850 | 8.1:-16189482 | MS.gene044439:CDS |
CGAAGAATGCTAATTGTATC+CGG | 0.481651 | 8.1:+16191812 | None:intergenic |
CAACACTCTTCTCCAAGTCT+TGG | 0.482364 | 8.1:-16190165 | MS.gene044439:CDS |
TTGATAAGCGCGGTGCTACC+AGG | 0.482529 | 8.1:+16192595 | None:intergenic |
TAGAAGGTGGCTAGAGAGGA+AGG | 0.489310 | 8.1:-16189657 | MS.gene044439:CDS |
GGTGATTTGTTTAAAGAAGC+CGG | 0.497778 | 8.1:-16192475 | MS.gene044439:CDS |
CAATTAGAAGGTGGCTAGAG+AGG | 0.498681 | 8.1:-16189661 | MS.gene044439:CDS |
GGAAGACCTCAACAACCAAC+TGG | 0.500438 | 8.1:-16190588 | MS.gene044439:CDS |
AGAGACTTGGTTGAACAAGC+AGG | 0.500744 | 8.1:-16192340 | MS.gene044439:CDS |
AGTATAGTAAAGAGAAAGAG+AGG | 0.501091 | 8.1:-16190989 | MS.gene044439:CDS |
AATGAGAAAGAAAGGTTGGT+TGG | 0.503006 | 8.1:-16190702 | MS.gene044439:CDS |
AGATTGATTGGTGCACCACC+AGG | 0.503361 | 8.1:-16190429 | MS.gene044439:CDS |
CCAGGCTCACCAATAAGAAC+AGG | 0.503576 | 8.1:+16192238 | None:intergenic |
GATACAATTAGCATTCTTCG+TGG | 0.503772 | 8.1:-16191809 | MS.gene044439:CDS |
AGGTTGTGACAGAGCTGTCT+AGG | 0.503837 | 8.1:-16189637 | MS.gene044439:CDS |
CTTATTGGTGAGCCTGGTGT+TGG | 0.504009 | 8.1:-16192232 | MS.gene044439:CDS |
AGCCGGTGTTGCTGTTTCTA+GGG | 0.504464 | 8.1:-16192458 | MS.gene044439:CDS |
TGAGATTCATCTTGTTCTTG+GGG | 0.504648 | 8.1:-16192008 | MS.gene044439:CDS |
AGTTGAAGAAGCTGAAGGGA+AGG | 0.506548 | 8.1:-16192047 | MS.gene044439:CDS |
GAAAAGCTGAGGGGTAAAGA+TGG | 0.507731 | 8.1:-16192421 | MS.gene044439:CDS |
TGAATTTGAGGAGAGGTTGA+AGG | 0.507933 | 8.1:-16192083 | MS.gene044439:CDS |
AAAGAAGTTGAAGAAGCTGA+AGG | 0.507975 | 8.1:-16192052 | MS.gene044439:CDS |
GTTAATCTTGGGAATTCTTG+AGG | 0.510532 | 8.1:-16192509 | MS.gene044439:CDS |
TGGATTAAAAGAGAGATATG+AGG | 0.510884 | 8.1:-16191789 | MS.gene044439:CDS |
ACAACGGTTTACATTGATGC+TGG | 0.514218 | 8.1:-16189584 | MS.gene044439:CDS |
CTAATTGTATCCGGAACACT+AGG | 0.517001 | 8.1:+16191821 | None:intergenic |
CCAAAATGAGAAAGAAAGGT+TGG | 0.517592 | 8.1:-16190706 | MS.gene044439:CDS |
GAAGTATAGGGGTGAATTTG+AGG | 0.518020 | 8.1:-16192095 | MS.gene044439:CDS |
AGCTGTCCACGAGCAAGCAT+TGG | 0.520046 | 8.1:+16191941 | None:intergenic |
TACATTGATGCTGGTCCTAA+GGG | 0.520358 | 8.1:-16189575 | MS.gene044439:CDS |
ACCTCCCATCATCCAAGACT+TGG | 0.521134 | 8.1:+16190153 | None:intergenic |
TAGCCGATGGACTGGTATAC+CGG | 0.521383 | 8.1:-16190742 | MS.gene044439:CDS |
AGACTGCACACTAGAGTTGT+GGG | 0.523577 | 8.1:-16190669 | MS.gene044439:CDS |
AAAAGCTGAGGGGTAAAGAT+GGG | 0.524371 | 8.1:-16192420 | MS.gene044439:CDS |
GGCGATTGATTTAGTTGATG+AGG | 0.524818 | 8.1:-16191555 | MS.gene044439:CDS |
GCTTGGAAGAAAATACCGTT+AGG | 0.527952 | 8.1:+16192721 | None:intergenic |
GCATACCGTGTAGAAAAGAA+TGG | 0.529493 | 8.1:-16189542 | MS.gene044439:CDS |
ACAACCTCGGCTATTTGGTC+CGG | 0.530467 | 8.1:+16190765 | None:intergenic |
TATGCTAAATCACTTCCCTT+AGG | 0.532281 | 8.1:+16189560 | None:intergenic |
TTACTATACTTCATCTTCAG+AGG | 0.533219 | 8.1:+16191002 | None:intergenic |
ATAGGGGTGAATTTGAGGAG+AGG | 0.533373 | 8.1:-16192090 | MS.gene044439:CDS |
TTGGCCAAAATGAGAAAGAA+AGG | 0.533425 | 8.1:-16190710 | MS.gene044439:CDS |
GGTTGCAAGGTTGCAAATGA+AGG | 0.533779 | 8.1:-16189904 | MS.gene044439:CDS |
AAGGAACCAGTTGGTTGTTG+AGG | 0.534620 | 8.1:+16190582 | None:intergenic |
GAGGTTGTTAGCCGATGGAC+TGG | 0.535262 | 8.1:-16190750 | MS.gene044439:CDS |
ATCATCATGACCTCTAACCT+TGG | 0.536499 | 8.1:-16190086 | MS.gene044439:CDS |
AGGAAATTGACAATCTTGAA+AGG | 0.539527 | 8.1:-16191493 | MS.gene044439:CDS |
AACCGCGGTTGTTGAAGGGT+TGG | 0.544086 | 8.1:-16192206 | MS.gene044439:CDS |
CTAACATCAGCAAGATTGCT+AGG | 0.545324 | 8.1:+16192157 | None:intergenic |
AGAATTGATGCAAGGTGTAA+GGG | 0.547836 | 8.1:+16192754 | None:intergenic |
GCCAGAATTGTTGAACCGAC+TGG | 0.548964 | 8.1:-16189973 | MS.gene044439:CDS |
CAGCAACAGCATTAACCGCC+TGG | 0.549246 | 8.1:+16190640 | None:intergenic |
ATCACATGAGCAATTGAGAA+AGG | 0.549247 | 8.1:-16189925 | MS.gene044439:CDS |
AACCCTAGAAACAGCAACAC+CGG | 0.556906 | 8.1:+16192456 | None:intergenic |
AACTGAGGTTGAAAAGCTGA+GGG | 0.557131 | 8.1:-16192431 | MS.gene044439:CDS |
GGTATGTTGGACATGAAGAA+GGG | 0.557789 | 8.1:-16190271 | MS.gene044439:CDS |
CTTGGGGCTGGTAGAACAGA+AGG | 0.557876 | 8.1:-16191992 | MS.gene044439:CDS |
TCCAAGTCTTGGATGATGGG+AGG | 0.558720 | 8.1:-16190154 | MS.gene044439:CDS |
GAGAGATATGAGGGTCATCA+TGG | 0.559334 | 8.1:-16191779 | MS.gene044439:CDS |
GGATTGTTAATGCTGAAACT+GGG | 0.559679 | 8.1:-16189517 | MS.gene044439:CDS |
TAGAGTTGTGGGACAAGACC+AGG | 0.560454 | 8.1:-16190658 | MS.gene044439:CDS |
GAAGACTTATGGAAGAGACT+TGG | 0.562344 | 8.1:-16192353 | MS.gene044439:CDS |
TGTCAAGAAAATGAGAATTG+AGG | 0.563545 | 8.1:-16189435 | MS.gene044439:CDS |
CTTCAATTGCACCATATCGC+AGG | 0.563940 | 8.1:+16190871 | None:intergenic |
AAGAAGTTGAAGAAGCTGAA+GGG | 0.564464 | 8.1:-16192051 | MS.gene044439:CDS |
TGCTGAGAGAGGAATTGCAT+TGG | 0.564643 | 8.1:-16189865 | MS.gene044439:CDS |
CATACTTACATCTACAAGAC+GGG | 0.566138 | 8.1:+16191406 | None:intergenic |
GTTGACTGAAACAGTTGGAC+CGG | 0.571247 | 8.1:-16190784 | MS.gene044439:CDS |
GGACTGGTATACCGGTGACT+AGG | 0.572247 | 8.1:-16190734 | MS.gene044439:CDS |
ATCTTGAAGGTAGCACTGAT+GGG | 0.576475 | 8.1:-16190827 | MS.gene044439:CDS |
GGTGCTGAGCATCTCTTGAG+TGG | 0.579664 | 8.1:-16190065 | MS.gene044439:CDS |
CCAGGCACTTCATCTGGTGG+AGG | 0.580312 | 8.1:+16192613 | None:intergenic |
CAGACTGCACACTAGAGTTG+TGG | 0.580593 | 8.1:-16190670 | MS.gene044439:CDS |
TAGCCGAGGTTGTTAGCCGA+TGG | 0.581783 | 8.1:-16190755 | MS.gene044439:CDS |
GGTATACCGGTGACTAGGCT+TGG | 0.582136 | 8.1:-16190729 | MS.gene044439:CDS |
CCTCCACCAGATGAAGTGCC+TGG | 0.583174 | 8.1:-16192613 | MS.gene044439:CDS |
TTGCAGCTCAATTGTCTAGT+CGG | 0.583231 | 8.1:-16191727 | MS.gene044439:CDS |
CTACCAGGCACTTCATCTGG+TGG | 0.583721 | 8.1:+16192610 | None:intergenic |
TTTAAACCAATGCTTGCTCG+TGG | 0.585207 | 8.1:-16191947 | MS.gene044439:CDS |
GAGTGATGCAGGAAGTAAGA+AGG | 0.587622 | 8.1:-16190004 | MS.gene044439:CDS |
TAACAGAAGCTGTAAGGAGA+AGG | 0.589440 | 8.1:-16190241 | MS.gene044439:CDS |
AGCAATTGAGAAAGGTTGCA+AGG | 0.593285 | 8.1:-16189917 | MS.gene044439:CDS |
AGAGGATTGATGAGATTCGA+AGG | 0.595177 | 8.1:-16190971 | MS.gene044439:CDS |
TTGTTGAAGGGTTGGCTCAG+AGG | 0.595730 | 8.1:-16192198 | MS.gene044439:CDS |
TGGTAAAACTGAGCTTGCAA+AGG | 0.600639 | 8.1:-16190535 | MS.gene044439:CDS |
ATTCTAGTTTCTGATCCTAA+CGG | 0.601379 | 8.1:-16192736 | MS.gene044439:CDS |
AAACTGAGGTTGAAAAGCTG+AGG | 0.602048 | 8.1:-16192432 | MS.gene044439:CDS |
TATTGGTGCTACAACGCTTG+AGG | 0.605062 | 8.1:-16191912 | MS.gene044439:CDS |
AGTTGGACCAAGGAATAAGA+AGG | 0.606835 | 8.1:+16190563 | None:intergenic |
TTAATGTTGACTGAAACAGT+TGG | 0.611185 | 8.1:-16190789 | MS.gene044439:CDS |
GGCGGTTAATGCTGTTGCTG+AGG | 0.611492 | 8.1:-16190637 | MS.gene044439:CDS |
TGTTTCTAGGGTTAAAACTG+AGG | 0.616506 | 8.1:-16192446 | MS.gene044439:CDS |
TACCGTGTAGAAAAGAATGG+AGG | 0.617392 | 8.1:-16189539 | MS.gene044439:CDS |
GGATTAAAAGAGAGATATGA+GGG | 0.617828 | 8.1:-16191788 | MS.gene044439:CDS |
CAATTCCTCTCTCAGCAAGA+CGG | 0.617980 | 8.1:+16189871 | None:intergenic |
GCTAGCCGTCTTGCTGAGAG+AGG | 0.619045 | 8.1:-16189876 | MS.gene044439:CDS |
CCATACTTACATCTACAAGA+CGG | 0.619404 | 8.1:+16191405 | None:intergenic |
TACCAACACCAGTTGGACCA+AGG | 0.623035 | 8.1:+16190553 | None:intergenic |
TCATGCTCTAGAGAAAGAGA+AGG | 0.626681 | 8.1:-16191444 | MS.gene044439:CDS |
GAGACTTGGTTGAACAAGCA+GGG | 0.628162 | 8.1:-16192339 | MS.gene044439:CDS |
ATTTGATGATGAAAATCAGT+TGG | 0.628949 | 8.1:-16190496 | MS.gene044439:CDS |
ACCGTGTAGAAAAGAATGGA+GGG | 0.629952 | 8.1:-16189538 | MS.gene044439:CDS |
AGGAATAAGAAGGAACCAGT+TGG | 0.632548 | 8.1:+16190573 | None:intergenic |
GGGAGGTTGACTGACGGACA+AGG | 0.633232 | 8.1:-16190137 | MS.gene044439:CDS |
TCGATCGCGAGCAACTTGCA+TGG | 0.634377 | 8.1:+16190025 | None:intergenic |
GCTGTATTGAGATCAAGAGC+TGG | 0.635226 | 8.1:-16190615 | MS.gene044439:CDS |
TCTGGTGGAGGTGATTGAGA+TGG | 0.640106 | 8.1:+16192625 | None:intergenic |
AAGAGATTCGAAGAGTTGTG+AGG | 0.646944 | 8.1:-16192288 | MS.gene044439:CDS |
GTTGGTGAGAATTGACATGT+CGG | 0.648441 | 8.1:-16190478 | MS.gene044439:CDS |
ATGGTGCTAGACCAATTAGA+AGG | 0.648738 | 8.1:-16189673 | MS.gene044439:CDS |
AGGGCGTCATCTACCTGACA+AGG | 0.649063 | 8.1:-16191576 | MS.gene044439:CDS |
AGCCAACCCTTCAACAACCG+CGG | 0.649201 | 8.1:+16192204 | None:intergenic |
CAGAAACTAGAATTGATGCA+AGG | 0.649347 | 8.1:+16192746 | None:intergenic |
TGGTAGAACAGAAGGATCGA+TGG | 0.650995 | 8.1:-16191984 | MS.gene044439:CDS |
GTATGTTGGACATGAAGAAG+GGG | 0.651475 | 8.1:-16190270 | MS.gene044439:CDS |
TGCATTGGCAGTAACAGATG+CGG | 0.653933 | 8.1:-16189850 | MS.gene044439:CDS |
ATATGGTGCAATTGAAGAGG+TGG | 0.654225 | 8.1:-16190865 | MS.gene044439:CDS |
TCACCGGTATACCAGTCCAT+CGG | 0.655399 | 8.1:+16190739 | None:intergenic |
AGAAATTGATGAAAATACAA+CGG | 0.657908 | 8.1:-16189600 | MS.gene044439:CDS |
AAGGTTGCAAATGAAGGATG+TGG | 0.660475 | 8.1:-16189898 | MS.gene044439:CDS |
ACGAATCGCTTTGATAAGCG+CGG | 0.664960 | 8.1:+16192585 | None:intergenic |
ATACAACAACTTCGTCCAGT+CGG | 0.665392 | 8.1:+16189958 | None:intergenic |
GTTGCTGGTGCGAAGTATAG+GGG | 0.666198 | 8.1:-16192106 | MS.gene044439:CDS |
TCAAGAGATGCTCAGCACCA+AGG | 0.666994 | 8.1:+16190069 | None:intergenic |
AGTCCATCGGCTAACAACCT+CGG | 0.668166 | 8.1:+16190752 | None:intergenic |
CACTACAGGAGGCAGAGAGG+CGG | 0.668262 | 8.1:-16190917 | MS.gene044439:CDS |
GTGCTAGACCAATTAGAAGG+TGG | 0.668833 | 8.1:-16189670 | MS.gene044439:CDS |
GCTCATCTTTGCACTACAGG+AGG | 0.670257 | 8.1:-16190928 | MS.gene044439:CDS |
GATTGTTAATGCTGAAACTG+GGG | 0.676690 | 8.1:-16189516 | MS.gene044439:CDS |
TGACGGACAAGGCAGAACTG+TGG | 0.678310 | 8.1:-16190126 | MS.gene044439:CDS |
GTATGATCTAGCCAGAGCTG+CGG | 0.683383 | 8.1:-16190895 | MS.gene044439:CDS |
TCAACTTGATAGTCAGCCTG+AGG | 0.685328 | 8.1:-16191513 | MS.gene044439:CDS |
GATTGATTGGTGCACCACCA+GGG | 0.685797 | 8.1:-16190428 | MS.gene044439:intron |
GCGATATGGTGCAATTGAAG+AGG | 0.687694 | 8.1:-16190868 | MS.gene044439:CDS |
CAAGCTGCACAGAAATCACG+TGG | 0.691575 | 8.1:-16192556 | MS.gene044439:CDS |
AATCTAATAACTTACCCTGG+TGG | 0.704597 | 8.1:+16190414 | None:intergenic |
TGGACCGGACCAAATAGCCG+AGG | 0.708477 | 8.1:-16190769 | MS.gene044439:CDS |
TATGTTGGACATGAAGAAGG+GGG | 0.714139 | 8.1:-16190269 | MS.gene044439:CDS |
TTGCACTACAGGAGGCAGAG+AGG | 0.722486 | 8.1:-16190920 | MS.gene044439:CDS |
GATGATGGGAGGTTGACTGA+CGG | 0.725487 | 8.1:-16190143 | MS.gene044439:CDS |
ACTGAGGTTGAAAAGCTGAG+GGG | 0.737026 | 8.1:-16192430 | MS.gene044439:CDS |
AGTTGTGGGACAAGACCAGG+CGG | 0.784379 | 8.1:-16190655 | MS.gene044439:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | ATAATATCATCTTATTCTTT+AGG | - | chr8.1:16192475-16192494 | MS.gene044439:CDS | 15.0% |
!! | GAATAAAATTTGACTAAATA+AGG | + | chr8.1:16190984-16191003 | None:intergenic | 15.0% |
!! | TATAATATAATAACACTTAC+TGG | + | chr8.1:16192458-16192477 | None:intergenic | 15.0% |
!!! | TATTAGTCTAAATAATATTC+AGG | + | chr8.1:16191866-16191885 | None:intergenic | 15.0% |
!! | AGAAATTGATGAAAATACAA+CGG | - | chr8.1:16192650-16192669 | MS.gene044439:CDS | 20.0% |
!! | ATAGAATATTTCAGACAAAA+TGG | - | chr8.1:16192500-16192519 | MS.gene044439:CDS | 20.0% |
!! | TTAATAAACATTCTAGTATG+TGG | - | chr8.1:16191917-16191936 | MS.gene044439:CDS | 20.0% |
! | ACTGCAATTAAAAATCTTGA+AGG | - | chr8.1:16191410-16191429 | MS.gene044439:intron | 25.0% |
! | AGAGAATATAAAGAACATAC+CGG | + | chr8.1:16190556-16190575 | None:intergenic | 25.0% |
! | CATCAAAATTAATGCTATCA+TGG | + | chr8.1:16190916-16190935 | None:intergenic | 25.0% |
! | CTAAGTACATAACTATATTG+TGG | - | chr8.1:16191081-16191100 | MS.gene044439:intron | 25.0% |
!! | TCATTTTGCATTGAATTTTC+AGG | - | chr8.1:16191958-16191977 | MS.gene044439:CDS | 25.0% |
!!! | ATTTGATGATGAAAATCAGT+TGG | - | chr8.1:16191754-16191773 | MS.gene044439:CDS | 25.0% |
AAGAACAATCCTGTTCTTAT+TGG | - | chr8.1:16190003-16190022 | MS.gene044439:CDS | 30.0% | |
AGGAAATTGACAATCTTGAA+AGG | - | chr8.1:16190757-16190776 | MS.gene044439:CDS | 30.0% | |
AGTACATAACTATATTGTGG+TGG | - | chr8.1:16191084-16191103 | MS.gene044439:intron | 30.0% | |
AGTATAGTAAAGAGAAAGAG+AGG | - | chr8.1:16191261-16191280 | MS.gene044439:intron | 30.0% | |
ATGAGATTCATCTTGTTCTT+GGG | - | chr8.1:16190241-16190260 | MS.gene044439:CDS | 30.0% | |
ATTCTGATTCAGATTCCAAA+TGG | - | chr8.1:16192768-16192787 | MS.gene044439:CDS | 30.0% | |
ATTTGAAAGAAGGTTTCAAC+AGG | - | chr8.1:16190392-16190411 | MS.gene044439:intron | 30.0% | |
GGATTAAAAGAGAGATATGA+GGG | - | chr8.1:16190462-16190481 | MS.gene044439:CDS | 30.0% | |
TAGTGGCTAATAATACTAAC+TGG | - | chr8.1:16192523-16192542 | MS.gene044439:CDS | 30.0% | |
TATTTCAGACAAAATGGTAG+TGG | - | chr8.1:16192506-16192525 | MS.gene044439:CDS | 30.0% | |
TGATGTTAGGTTAATTGCTT+TGG | - | chr8.1:16190107-16190126 | MS.gene044439:CDS | 30.0% | |
TGGATTAAAAGAGAGATATG+AGG | - | chr8.1:16190461-16190480 | MS.gene044439:CDS | 30.0% | |
TGTCAAGAAAATGAGAATTG+AGG | - | chr8.1:16192815-16192834 | MS.gene044439:CDS | 30.0% | |
TTACTATACTTCATCTTCAG+AGG | + | chr8.1:16191251-16191270 | None:intergenic | 30.0% | |
! | AGGTTAATTGCTTTGGATAT+GGG | - | chr8.1:16190114-16190133 | MS.gene044439:CDS | 30.0% |
! | GTTTTGTGAGTAAATTTCTC+TGG | + | chr8.1:16189415-16189434 | None:intergenic | 30.0% |
! | TAGGTTAATTGCTTTGGATA+TGG | - | chr8.1:16190113-16190132 | MS.gene044439:CDS | 30.0% |
! | TCAAAAAGTACAACACTGTA+TGG | + | chr8.1:16192035-16192054 | None:intergenic | 30.0% |
! | TTAACTCTAGCTACTAGTTT+AGG | + | chr8.1:16191890-16191909 | None:intergenic | 30.0% |
! | TTAATGTTGACTGAAACAGT+TGG | - | chr8.1:16191461-16191480 | MS.gene044439:CDS | 30.0% |
!! | ATGTGTTTTGGATGTGTTAA+GGG | - | chr8.1:16190655-16190674 | MS.gene044439:CDS | 30.0% |
!! | ATTCTAGTTTCTGATCCTAA+CGG | - | chr8.1:16189514-16189533 | MS.gene044439:CDS | 30.0% |
!! | GTTATTGTTGTTTCTTGTGT+AGG | - | chr8.1:16192551-16192570 | MS.gene044439:CDS | 30.0% |
!! | TATGTGTTTTGGATGTGTTA+AGG | - | chr8.1:16190654-16190673 | MS.gene044439:CDS | 30.0% |
!! | TTTCAAGCATTGAAGACTTA+TGG | - | chr8.1:16189886-16189905 | MS.gene044439:CDS | 30.0% |
!!! | CATTGAATTTTCAGGTATGT+TGG | - | chr8.1:16191966-16191985 | MS.gene044439:CDS | 30.0% |
AAAGAAGTTGAAGAAGCTGA+AGG | - | chr8.1:16190198-16190217 | MS.gene044439:CDS | 35.0% | |
AAGAAGTTGAAGAAGCTGAA+GGG | - | chr8.1:16190199-16190218 | MS.gene044439:CDS | 35.0% | |
AAGATGCAGCATTTGAAAGA+AGG | - | chr8.1:16190382-16190401 | MS.gene044439:intron | 35.0% | |
AAGGTTTCAACAGGTTTATG+TGG | - | chr8.1:16190401-16190420 | MS.gene044439:intron | 35.0% | |
AATCTAATAACTTACCCTGG+TGG | + | chr8.1:16191839-16191858 | None:intergenic | 35.0% | |
ACGAATCTAATAACTTACCC+TGG | + | chr8.1:16191842-16191861 | None:intergenic | 35.0% | |
AGAATTGATGCAAGGTGTAA+GGG | + | chr8.1:16189499-16189518 | None:intergenic | 35.0% | |
AGCTGTTGATCAGTTAATCT+TGG | - | chr8.1:16189729-16189748 | MS.gene044439:intron | 35.0% | |
ATCACATGAGCAATTGAGAA+AGG | - | chr8.1:16192325-16192344 | MS.gene044439:CDS | 35.0% | |
ATTCTTGAGGATTCTCAGAT+TGG | - | chr8.1:16189754-16189773 | MS.gene044439:intron | 35.0% | |
CACTCTGTATCAAGATTGAT+TGG | - | chr8.1:16191809-16191828 | MS.gene044439:CDS | 35.0% | |
CACTTGTGTTTATGCTAACA+TGG | - | chr8.1:16190631-16190650 | MS.gene044439:CDS | 35.0% | |
CAGAAACTAGAATTGATGCA+AGG | + | chr8.1:16189507-16189526 | None:intergenic | 35.0% | |
CATACTTACATCTACAAGAC+GGG | + | chr8.1:16190847-16190866 | None:intergenic | 35.0% | |
CCAAAATGAGAAAGAAAGGT+TGG | - | chr8.1:16191544-16191563 | MS.gene044439:CDS | 35.0% | |
CCATACTTACATCTACAAGA+CGG | + | chr8.1:16190848-16190867 | None:intergenic | 35.0% | |
CGAAGAATGCTAATTGTATC+CGG | + | chr8.1:16190441-16190460 | None:intergenic | 35.0% | |
GATACAATTAGCATTCTTCG+TGG | - | chr8.1:16190441-16190460 | MS.gene044439:CDS | 35.0% | |
GATGAGATTCATCTTGTTCT+TGG | - | chr8.1:16190240-16190259 | MS.gene044439:CDS | 35.0% | |
GATTGTTAATGCTGAAACTG+GGG | - | chr8.1:16192734-16192753 | MS.gene044439:CDS | 35.0% | |
GCTGTTGATCAGTTAATCTT+GGG | - | chr8.1:16189730-16189749 | MS.gene044439:intron | 35.0% | |
GGATTGTTAATGCTGAAACT+GGG | - | chr8.1:16192733-16192752 | MS.gene044439:CDS | 35.0% | |
GTCAATTAACAGAAGCTGTA+AGG | - | chr8.1:16192003-16192022 | MS.gene044439:CDS | 35.0% | |
GTTAATCTTGGGAATTCTTG+AGG | - | chr8.1:16189741-16189760 | MS.gene044439:intron | 35.0% | |
TAGAATTGATGCAAGGTGTA+AGG | + | chr8.1:16189500-16189519 | None:intergenic | 35.0% | |
TATGCTAAATCACTTCCCTT+AGG | + | chr8.1:16192693-16192712 | None:intergenic | 35.0% | |
TCAAGATTGTCAATTTCCTC+AGG | + | chr8.1:16190756-16190775 | None:intergenic | 35.0% | |
TGAGATTCATCTTGTTCTTG+GGG | - | chr8.1:16190242-16190261 | MS.gene044439:CDS | 35.0% | |
TTGGCCAAAATGAGAAAGAA+AGG | - | chr8.1:16191540-16191559 | MS.gene044439:CDS | 35.0% | |
! | AATGAGAAAGAAAGGTTGGT+TGG | - | chr8.1:16191548-16191567 | MS.gene044439:CDS | 35.0% |
! | CCAACCTTTCTTTCTCATTT+TGG | + | chr8.1:16191547-16191566 | None:intergenic | 35.0% |
! | TGATAGTTGATGTTATTCGC+AGG | - | chr8.1:16191187-16191206 | MS.gene044439:intron | 35.0% |
! | TGCTAACATGGTATGTGTTT+TGG | - | chr8.1:16190643-16190662 | MS.gene044439:CDS | 35.0% |
! | TTGTGAGGATTTTGTCAAGA+AGG | - | chr8.1:16189977-16189996 | MS.gene044439:CDS | 35.0% |
! | TTGTTTCTTGTGTAGGTGTA+TGG | - | chr8.1:16192558-16192577 | MS.gene044439:CDS | 35.0% |
!! | AAAAAGGTTGAAAGTGCTTC+TGG | - | chr8.1:16189853-16189872 | MS.gene044439:CDS | 35.0% |
!! | GGAAGTTGATGATGATGAAA+TGG | - | chr8.1:16192836-16192855 | MS.gene044439:CDS | 35.0% |
!! | GGTGATTTGTTTAAAGAAGC+CGG | - | chr8.1:16189775-16189794 | MS.gene044439:intron | 35.0% |
!! | TGTTTCTAGGGTTAAAACTG+AGG | - | chr8.1:16189804-16189823 | MS.gene044439:intron | 35.0% |
AAAAGCTGAGGGGTAAAGAT+GGG | - | chr8.1:16189830-16189849 | MS.gene044439:CDS | 40.0% | |
AAACTGAGGTTGAAAAGCTG+AGG | - | chr8.1:16189818-16189837 | MS.gene044439:CDS | 40.0% | |
AACTGAGGTTGAAAAGCTGA+GGG | - | chr8.1:16189819-16189838 | MS.gene044439:CDS | 40.0% | |
AAGAGATTCGAAGAGTTGTG+AGG | - | chr8.1:16189962-16189981 | MS.gene044439:CDS | 40.0% | |
AAGGTTGCAAATGAAGGATG+TGG | - | chr8.1:16192352-16192371 | MS.gene044439:CDS | 40.0% | |
AATTGACATGTCGGAGTACA+TGG | - | chr8.1:16191781-16191800 | MS.gene044439:CDS | 40.0% | |
ACAACGGTTTACATTGATGC+TGG | - | chr8.1:16192666-16192685 | MS.gene044439:CDS | 40.0% | |
ACCGTGTAGAAAAGAATGGA+GGG | - | chr8.1:16192712-16192731 | MS.gene044439:CDS | 40.0% | |
ACTAAATCAATCGCCTTGTC+AGG | + | chr8.1:16190690-16190709 | None:intergenic | 40.0% | |
AGAGGATTGATGAGATTCGA+AGG | - | chr8.1:16191279-16191298 | MS.gene044439:intron | 40.0% | |
AGCAATTGAGAAAGGTTGCA+AGG | - | chr8.1:16192333-16192352 | MS.gene044439:CDS | 40.0% | |
AGGAATAAGAAGGAACCAGT+TGG | + | chr8.1:16191680-16191699 | None:intergenic | 40.0% | |
AGGTATGTTGGACATGAAGA+AGG | - | chr8.1:16191978-16191997 | MS.gene044439:CDS | 40.0% | |
AGTTGGACCAAGGAATAAGA+AGG | + | chr8.1:16191690-16191709 | None:intergenic | 40.0% | |
ATACAACAACTTCGTCCAGT+CGG | + | chr8.1:16192295-16192314 | None:intergenic | 40.0% | |
ATATGGTGCAATTGAAGAGG+TGG | - | chr8.1:16191385-16191404 | MS.gene044439:intron | 40.0% | |
ATCATCATGACCTCTAACCT+TGG | - | chr8.1:16192164-16192183 | MS.gene044439:CDS | 40.0% | |
CAAGCAATTTCAAACGTTGC+TGG | - | chr8.1:16189547-16189566 | MS.gene044439:CDS | 40.0% | |
CCGTCTTGTAGATGTAAGTA+TGG | - | chr8.1:16190845-16190864 | MS.gene044439:CDS | 40.0% | |
CTAACATCAGCAAGATTGCT+AGG | + | chr8.1:16190096-16190115 | None:intergenic | 40.0% | |
CTAATTGTATCCGGAACACT+AGG | + | chr8.1:16190432-16190451 | None:intergenic | 40.0% | |
CTAGCAATCTTGCTGATGTT+AGG | - | chr8.1:16190094-16190113 | MS.gene044439:CDS | 40.0% | |
CTCAATTGCTCATGTGATAG+AGG | + | chr8.1:16192323-16192342 | None:intergenic | 40.0% | |
GAAGACTTATGGAAGAGACT+TGG | - | chr8.1:16189897-16189916 | MS.gene044439:CDS | 40.0% | |
GAAGTATAGGGGTGAATTTG+AGG | - | chr8.1:16190155-16190174 | MS.gene044439:CDS | 40.0% | |
GCATACCGTGTAGAAAAGAA+TGG | - | chr8.1:16192708-16192727 | MS.gene044439:CDS | 40.0% | |
GCTTGGAAGAAAATACCGTT+AGG | + | chr8.1:16189532-16189551 | None:intergenic | 40.0% | |
GGGATTGTTAATGCTGAAAC+TGG | - | chr8.1:16192732-16192751 | MS.gene044439:CDS | 40.0% | |
GGTATGTTGGACATGAAGAA+GGG | - | chr8.1:16191979-16191998 | MS.gene044439:CDS | 40.0% | |
GTATGTTGGACATGAAGAAG+GGG | - | chr8.1:16191980-16191999 | MS.gene044439:CDS | 40.0% | |
GTTGATGTTATTCGCAGGTA+CGG | - | chr8.1:16191192-16191211 | MS.gene044439:intron | 40.0% | |
TAACAGAAGCTGTAAGGAGA+AGG | - | chr8.1:16192009-16192028 | MS.gene044439:CDS | 40.0% | |
TACATTGATGCTGGTCCTAA+GGG | - | chr8.1:16192675-16192694 | MS.gene044439:CDS | 40.0% | |
TACCGTGTAGAAAAGAATGG+AGG | - | chr8.1:16192711-16192730 | MS.gene044439:CDS | 40.0% | |
TATGTTGGACATGAAGAAGG+GGG | - | chr8.1:16191981-16192000 | MS.gene044439:CDS | 40.0% | |
TGAATTTGAGGAGAGGTTGA+AGG | - | chr8.1:16190167-16190186 | MS.gene044439:CDS | 40.0% | |
TGGTAAAACTGAGCTTGCAA+AGG | - | chr8.1:16191715-16191734 | MS.gene044439:intron | 40.0% | |
TTACATTGATGCTGGTCCTA+AGG | - | chr8.1:16192674-16192693 | MS.gene044439:CDS | 40.0% | |
TTCTCCAAGTCTTGGATGAT+GGG | - | chr8.1:16192093-16192112 | MS.gene044439:CDS | 40.0% | |
TTCTTATTCCTTGGTCCAAC+TGG | - | chr8.1:16191689-16191708 | MS.gene044439:intron | 40.0% | |
TTGCAGCTCAATTGTCTAGT+CGG | - | chr8.1:16190523-16190542 | MS.gene044439:CDS | 40.0% | |
TTGTCTAGTCGGTACATAAC+CGG | - | chr8.1:16190534-16190553 | MS.gene044439:CDS | 40.0% | |
TTTAAACCAATGCTTGCTCG+TGG | - | chr8.1:16190303-16190322 | MS.gene044439:intron | 40.0% | |
! | AAAACAAACGAAGCACTTGC+TGG | - | chr8.1:16189430-16189449 | MS.gene044439:CDS | 40.0% |
! | AAAGAAAGGTTGGTTGGACT+TGG | - | chr8.1:16191554-16191573 | MS.gene044439:CDS | 40.0% |
! | AATCTTGAAGGTAGCACTGA+TGG | - | chr8.1:16191422-16191441 | MS.gene044439:CDS | 40.0% |
! | ACTGGTTCCTTCTTATTCCT+TGG | - | chr8.1:16191680-16191699 | MS.gene044439:intron | 40.0% |
! | ATGGTGCTAGACCAATTAGA+AGG | - | chr8.1:16192577-16192596 | MS.gene044439:CDS | 40.0% |
! | CAGCAACGTTTGAAATTGCT+TGG | + | chr8.1:16189549-16189568 | None:intergenic | 40.0% |
! | GGCGATTGATTTAGTTGATG+AGG | - | chr8.1:16190695-16190714 | MS.gene044439:CDS | 40.0% |
! | GTTGGTGAGAATTGACATGT+CGG | - | chr8.1:16191772-16191791 | MS.gene044439:CDS | 40.0% |
! | TCAGTTTTACCAACACCAGT+TGG | + | chr8.1:16191707-16191726 | None:intergenic | 40.0% |
! | TCCCTCCATTCTTTTCTACA+CGG | + | chr8.1:16192716-16192735 | None:intergenic | 40.0% |
! | TTGAGATCAAGAGCTGGTTT+AGG | - | chr8.1:16191641-16191660 | MS.gene044439:intron | 40.0% |
!! | AGGAAGTAAGAAGGCATTTC+AGG | - | chr8.1:16192255-16192274 | MS.gene044439:CDS | 40.0% |
!! | ATCTTGAAGGTAGCACTGAT+GGG | - | chr8.1:16191423-16191442 | MS.gene044439:CDS | 40.0% |
!! | TCATGCTCTAGAGAAAGAGA+AGG | - | chr8.1:16190806-16190825 | MS.gene044439:CDS | 40.0% |
AACCCTAGAAACAGCAACAC+CGG | + | chr8.1:16189797-16189816 | None:intergenic | 45.0% | |
AAGGAACCAGTTGGTTGTTG+AGG | + | chr8.1:16191671-16191690 | None:intergenic | 45.0% | |
AAGGCAGAACTGTGGACTTT+AGG | - | chr8.1:16192132-16192151 | MS.gene044439:CDS | 45.0% | |
ACCGAAAAGTGATGCTGTTC+AGG | - | chr8.1:16192791-16192810 | MS.gene044439:CDS | 45.0% | |
ACGAATCGCTTTGATAAGCG+CGG | + | chr8.1:16189668-16189687 | None:intergenic | 45.0% | |
ACTGAGGTTGAAAAGCTGAG+GGG | - | chr8.1:16189820-16189839 | MS.gene044439:CDS | 45.0% | |
AGACTGCACACTAGAGTTGT+GGG | - | chr8.1:16191581-16191600 | MS.gene044439:intron | 45.0% | |
AGAGCTCATCTTTGCACTAC+AGG | - | chr8.1:16191319-16191338 | MS.gene044439:intron | 45.0% | |
AGTTGAAGAAGCTGAAGGGA+AGG | - | chr8.1:16190203-16190222 | MS.gene044439:CDS | 45.0% | |
ATAGGGGTGAATTTGAGGAG+AGG | - | chr8.1:16190160-16190179 | MS.gene044439:CDS | 45.0% | |
ATTCATCTTGTTCTTGGGGC+TGG | - | chr8.1:16190246-16190265 | MS.gene044439:CDS | 45.0% | |
CAACACTCTTCTCCAAGTCT+TGG | - | chr8.1:16192085-16192104 | MS.gene044439:CDS | 45.0% | |
CAATTAGAAGGTGGCTAGAG+AGG | - | chr8.1:16192589-16192608 | MS.gene044439:CDS | 45.0% | |
CAATTCCTCTCTCAGCAAGA+CGG | + | chr8.1:16192382-16192401 | None:intergenic | 45.0% | |
CTCTCTAGCCACCTTCTAAT+TGG | + | chr8.1:16192591-16192610 | None:intergenic | 45.0% | |
CTTCAATTGCACCATATCGC+AGG | + | chr8.1:16191382-16191401 | None:intergenic | 45.0% | |
CTTCTCCAAGTCTTGGATGA+TGG | - | chr8.1:16192092-16192111 | MS.gene044439:CDS | 45.0% | |
GAAAAACCGCGGTTGTTGAA+GGG | - | chr8.1:16190040-16190059 | MS.gene044439:CDS | 45.0% | |
GAAAAGCTGAGGGGTAAAGA+TGG | - | chr8.1:16189829-16189848 | MS.gene044439:CDS | 45.0% | |
GAGAGATATGAGGGTCATCA+TGG | - | chr8.1:16190471-16190490 | MS.gene044439:CDS | 45.0% | |
GAGGGGTAAAGATGGGAAAA+AGG | - | chr8.1:16189837-16189856 | MS.gene044439:CDS | 45.0% | |
GAGTGATGCAGGAAGTAAGA+AGG | - | chr8.1:16192246-16192265 | MS.gene044439:CDS | 45.0% | |
GCGATATGGTGCAATTGAAG+AGG | - | chr8.1:16191382-16191401 | MS.gene044439:intron | 45.0% | |
GCTGTATTGAGATCAAGAGC+TGG | - | chr8.1:16191635-16191654 | MS.gene044439:intron | 45.0% | |
GGGAAGCTTGATCCTGTTAT+TGG | - | chr8.1:16189931-16189950 | MS.gene044439:CDS | 45.0% | |
GGTTGCAAGGTTGCAAATGA+AGG | - | chr8.1:16192346-16192365 | MS.gene044439:CDS | 45.0% | |
GTGCTAGACCAATTAGAAGG+TGG | - | chr8.1:16192580-16192599 | MS.gene044439:CDS | 45.0% | |
GTGCTGCAAATGTGGGATAA+TGG | - | chr8.1:16191106-16191125 | MS.gene044439:intron | 45.0% | |
GTTGACTGAAACAGTTGGAC+CGG | - | chr8.1:16191466-16191485 | MS.gene044439:CDS | 45.0% | |
TGCTGAGAGAGGAATTGCAT+TGG | - | chr8.1:16192385-16192404 | MS.gene044439:CDS | 45.0% | |
TGGTAGAACAGAAGGATCGA+TGG | - | chr8.1:16190266-16190285 | MS.gene044439:CDS | 45.0% | |
TTGGCTCAGAGGATTGTTAG+AGG | - | chr8.1:16190063-16190082 | MS.gene044439:CDS | 45.0% | |
! | AGAGACTTGGTTGAACAAGC+AGG | - | chr8.1:16189910-16189929 | MS.gene044439:CDS | 45.0% |
! | CATCTCTTGAGTGGACTTTC+AGG | - | chr8.1:16192194-16192213 | MS.gene044439:CDS | 45.0% |
! | CTACAACGCTTGAGGAGTAT+AGG | - | chr8.1:16190346-16190365 | MS.gene044439:intron | 45.0% |
! | GAGACTTGGTTGAACAAGCA+GGG | - | chr8.1:16189911-16189930 | MS.gene044439:CDS | 45.0% |
! | TCAACTTGATAGTCAGCCTG+AGG | - | chr8.1:16190737-16190756 | MS.gene044439:CDS | 45.0% |
! | TCCAGTCGGTTCAACAATTC+TGG | + | chr8.1:16192281-16192300 | None:intergenic | 45.0% |
! | TGCATTGGCAGTAACAGATG+CGG | - | chr8.1:16192400-16192419 | MS.gene044439:CDS | 45.0% |
!! | GCATCACTTTTCGGTCCATT+TGG | + | chr8.1:16192786-16192805 | None:intergenic | 45.0% |
!! | GCCTGAACAGCATCACTTTT+CGG | + | chr8.1:16192795-16192814 | None:intergenic | 45.0% |
!! | TATTGGTGCTACAACGCTTG+AGG | - | chr8.1:16190338-16190357 | MS.gene044439:intron | 45.0% |
ACAACCTCGGCTATTTGGTC+CGG | + | chr8.1:16191488-16191507 | None:intergenic | 50.0% | |
ACCTCCCATCATCCAAGACT+TGG | + | chr8.1:16192100-16192119 | None:intergenic | 50.0% | |
AGATTGATTGGTGCACCACC+AGG | - | chr8.1:16191821-16191840 | MS.gene044439:CDS | 50.0% | |
AGGTTGTGACAGAGCTGTCT+AGG | - | chr8.1:16192613-16192632 | MS.gene044439:CDS | 50.0% | |
ATGCTCAGCACCAAGGTTAG+AGG | + | chr8.1:16192177-16192196 | None:intergenic | 50.0% | |
CAAGCTGCACAGAAATCACG+TGG | - | chr8.1:16189694-16189713 | MS.gene044439:intron | 50.0% | |
CACGAGCTAGCAATGACTTC+AGG | - | chr8.1:16189457-16189476 | MS.gene044439:CDS | 50.0% | |
CAGACTGCACACTAGAGTTG+TGG | - | chr8.1:16191580-16191599 | MS.gene044439:intron | 50.0% | |
CCAGGCTCACCAATAAGAAC+AGG | + | chr8.1:16190015-16190034 | None:intergenic | 50.0% | |
CCTGTTCTTATTGGTGAGCC+TGG | - | chr8.1:16190012-16190031 | MS.gene044439:CDS | 50.0% | |
CGTGGACAGCTTCGATGTAT+TGG | - | chr8.1:16190321-16190340 | MS.gene044439:intron | 50.0% | |
CTTATTGGTGAGCCTGGTGT+TGG | - | chr8.1:16190018-16190037 | MS.gene044439:CDS | 50.0% | |
GATTGATTGGTGCACCACCA+GGG | - | chr8.1:16191822-16191841 | MS.gene044439:CDS | 50.0% | |
GCCAGAATTGTTGAACCGAC+TGG | - | chr8.1:16192277-16192296 | MS.gene044439:CDS | 50.0% | |
GCTCATCTTTGCACTACAGG+AGG | - | chr8.1:16191322-16191341 | MS.gene044439:intron | 50.0% | |
GGAAAAACCGCGGTTGTTGA+AGG | - | chr8.1:16190039-16190058 | MS.gene044439:CDS | 50.0% | |
GGAAGACCTCAACAACCAAC+TGG | - | chr8.1:16191662-16191681 | MS.gene044439:intron | 50.0% | |
GGCTAACAACCTCGGCTATT+TGG | + | chr8.1:16191493-16191512 | None:intergenic | 50.0% | |
GGTTGCTGGTGCGAAGTATA+GGG | - | chr8.1:16190143-16190162 | MS.gene044439:CDS | 50.0% | |
GTATGATCTAGCCAGAGCTG+CGG | - | chr8.1:16191355-16191374 | MS.gene044439:intron | 50.0% | |
GTTGCTGGTGCGAAGTATAG+GGG | - | chr8.1:16190144-16190163 | MS.gene044439:CDS | 50.0% | |
TACCAACACCAGTTGGACCA+AGG | + | chr8.1:16191700-16191719 | None:intergenic | 50.0% | |
TAGAAGGTGGCTAGAGAGGA+AGG | - | chr8.1:16192593-16192612 | MS.gene044439:CDS | 50.0% | |
TAGAGTTGTGGGACAAGACC+AGG | - | chr8.1:16191592-16191611 | MS.gene044439:intron | 50.0% | |
TCAAGAGATGCTCAGCACCA+AGG | + | chr8.1:16192184-16192203 | None:intergenic | 50.0% | |
TCACCGGTATACCAGTCCAT+CGG | + | chr8.1:16191514-16191533 | None:intergenic | 50.0% | |
TCTGGTGGAGGTGATTGAGA+TGG | + | chr8.1:16189628-16189647 | None:intergenic | 50.0% | |
TCTTCGTCGCGTCCAATAAC+AGG | + | chr8.1:16189946-16189965 | None:intergenic | 50.0% | |
TGGTTGCTGGTGCGAAGTAT+AGG | - | chr8.1:16190142-16190161 | MS.gene044439:CDS | 50.0% | |
TGTGGCTGAACCTAGTGTTC+CGG | - | chr8.1:16190419-16190438 | MS.gene044439:intron | 50.0% | |
TTCCTTGGTCCAACTGGTGT+TGG | - | chr8.1:16191695-16191714 | MS.gene044439:intron | 50.0% | |
! | AGTCCATCGGCTAACAACCT+CGG | + | chr8.1:16191501-16191520 | None:intergenic | 50.0% |
! | TGCTTTGGATATGGGAGCAC+TGG | - | chr8.1:16190122-16190141 | MS.gene044439:CDS | 50.0% |
! | TTTTGGCCAAGCCTAGTCAC+CGG | + | chr8.1:16191530-16191549 | None:intergenic | 50.0% |
!! | AAGCCGGTGTTGCTGTTTCT+AGG | - | chr8.1:16189791-16189810 | MS.gene044439:intron | 50.0% |
!! | AGCCGGTGTTGCTGTTTCTA+GGG | - | chr8.1:16189792-16189811 | MS.gene044439:intron | 50.0% |
!! | GATGATGGGAGGTTGACTGA+CGG | - | chr8.1:16192107-16192126 | MS.gene044439:CDS | 50.0% |
!! | TAGCCGATGGACTGGTATAC+CGG | - | chr8.1:16191508-16191527 | MS.gene044439:CDS | 50.0% |
!! | TCCAAGTCTTGGATGATGGG+AGG | - | chr8.1:16192096-16192115 | MS.gene044439:CDS | 50.0% |
!! | TGTGGTGGTGCTGCAAATGT+GGG | - | chr8.1:16191099-16191118 | MS.gene044439:intron | 50.0% |
!! | TTGTGGTGGTGCTGCAAATG+TGG | - | chr8.1:16191098-16191117 | MS.gene044439:intron | 50.0% |
!! | TTGTTGAAGGGTTGGCTCAG+AGG | - | chr8.1:16190052-16190071 | MS.gene044439:CDS | 50.0% |
AACCGCGGTTGTTGAAGGGT+TGG | - | chr8.1:16190044-16190063 | MS.gene044439:CDS | 55.0% | |
AGCCAACCCTTCAACAACCG+CGG | + | chr8.1:16190049-16190068 | None:intergenic | 55.0% | |
AGCTGTCCACGAGCAAGCAT+TGG | + | chr8.1:16190312-16190331 | None:intergenic | 55.0% | |
AGTTGTGGGACAAGACCAGG+CGG | - | chr8.1:16191595-16191614 | MS.gene044439:intron | 55.0% | |
CAGCAACAGCATTAACCGCC+TGG | + | chr8.1:16191613-16191632 | None:intergenic | 55.0% | |
CTACCAGGCACTTCATCTGG+TGG | + | chr8.1:16189643-16189662 | None:intergenic | 55.0% | |
GAGGTTGTTAGCCGATGGAC+TGG | - | chr8.1:16191500-16191519 | MS.gene044439:CDS | 55.0% | |
GGCGGTTAATGCTGTTGCTG+AGG | - | chr8.1:16191613-16191632 | MS.gene044439:intron | 55.0% | |
GGTATACCGGTGACTAGGCT+TGG | - | chr8.1:16191521-16191540 | MS.gene044439:CDS | 55.0% | |
GTGCTACCAGGCACTTCATC+TGG | + | chr8.1:16189646-16189665 | None:intergenic | 55.0% | |
TAGCCGAGGTTGTTAGCCGA+TGG | - | chr8.1:16191495-16191514 | MS.gene044439:CDS | 55.0% | |
TCGATCGCGAGCAACTTGCA+TGG | + | chr8.1:16192228-16192247 | None:intergenic | 55.0% | |
TTGCACTACAGGAGGCAGAG+AGG | - | chr8.1:16191330-16191349 | MS.gene044439:intron | 55.0% | |
! | ACCGCGGTTTTTCCAACACC+AGG | + | chr8.1:16190033-16190052 | None:intergenic | 55.0% |
! | AGGGCGTCATCTACCTGACA+AGG | - | chr8.1:16190674-16190693 | MS.gene044439:CDS | 55.0% |
! | CTTGGGGCTGGTAGAACAGA+AGG | - | chr8.1:16190258-16190277 | MS.gene044439:CDS | 55.0% |
! | GCCTGGTGTTGGAAAAACCG+CGG | - | chr8.1:16190029-16190048 | MS.gene044439:CDS | 55.0% |
! | GGACTGGTATACCGGTGACT+AGG | - | chr8.1:16191516-16191535 | MS.gene044439:CDS | 55.0% |
! | GGTGCTGAGCATCTCTTGAG+TGG | - | chr8.1:16192185-16192204 | MS.gene044439:CDS | 55.0% |
! | TGACGGACAAGGCAGAACTG+TGG | - | chr8.1:16192124-16192143 | MS.gene044439:CDS | 55.0% |
!! | GATATGGGAGCACTGGTTGC+TGG | - | chr8.1:16190129-16190148 | MS.gene044439:CDS | 55.0% |
!! | TTGATAAGCGCGGTGCTACC+AGG | + | chr8.1:16189658-16189677 | None:intergenic | 55.0% |
AGAGCTGCGGACCTGCGATA+TGG | - | chr8.1:16191368-16191387 | MS.gene044439:intron | 60.0% | |
ATATCGCAGGTCCGCAGCTC+TGG | + | chr8.1:16191369-16191388 | None:intergenic | 60.0% | |
CACTACAGGAGGCAGAGAGG+CGG | - | chr8.1:16191333-16191352 | MS.gene044439:intron | 60.0% | |
CCAGGCACTTCATCTGGTGG+AGG | + | chr8.1:16189640-16189659 | None:intergenic | 60.0% | |
GCTAGCCGTCTTGCTGAGAG+AGG | - | chr8.1:16192374-16192393 | MS.gene044439:CDS | 60.0% | |
TGCTCGCGATCGAGTGATGC+AGG | - | chr8.1:16192235-16192254 | MS.gene044439:CDS | 60.0% | |
TGGACCGGACCAAATAGCCG+AGG | - | chr8.1:16191481-16191500 | MS.gene044439:CDS | 60.0% | |
! | CCTCCACCAGATGAAGTGCC+TGG | - | chr8.1:16189637-16189656 | MS.gene044439:CDS | 60.0% |
! | GGGAGGTTGACTGACGGACA+AGG | - | chr8.1:16192113-16192132 | MS.gene044439:CDS | 60.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr8.1 | gene | 16189406 | 16192866 | 16189406 | ID=MS.gene044439 |
chr8.1 | mRNA | 16189406 | 16192866 | 16189406 | ID=MS.gene044439.t1;Parent=MS.gene044439 |
chr8.1 | exon | 16191717 | 16192866 | 16191717 | ID=MS.gene044439.t1.exon1;Parent=MS.gene044439.t1 |
chr8.1 | CDS | 16191717 | 16192866 | 16191717 | ID=cds.MS.gene044439.t1;Parent=MS.gene044439.t1 |
chr8.1 | exon | 16191415 | 16191596 | 16191415 | ID=MS.gene044439.t1.exon2;Parent=MS.gene044439.t1 |
chr8.1 | CDS | 16191415 | 16191596 | 16191415 | ID=cds.MS.gene044439.t1;Parent=MS.gene044439.t1 |
chr8.1 | exon | 16190429 | 16191063 | 16190429 | ID=MS.gene044439.t1.exon3;Parent=MS.gene044439.t1 |
chr8.1 | CDS | 16190429 | 16191063 | 16190429 | ID=cds.MS.gene044439.t1;Parent=MS.gene044439.t1 |
chr8.1 | exon | 16189815 | 16190292 | 16189815 | ID=MS.gene044439.t1.exon4;Parent=MS.gene044439.t1 |
chr8.1 | CDS | 16189815 | 16190292 | 16189815 | ID=cds.MS.gene044439.t1;Parent=MS.gene044439.t1 |
chr8.1 | exon | 16189406 | 16189699 | 16189406 | ID=MS.gene044439.t1.exon5;Parent=MS.gene044439.t1 |
chr8.1 | CDS | 16189406 | 16189699 | 16189406 | ID=cds.MS.gene044439.t1;Parent=MS.gene044439.t1 |
Gene Sequence |
Protein sequence |