AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene044439


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene044439.t1 MTR_4g109450 99.342 912 6 0 1 912 1 912 0.0 1828
MS.gene044439.t1 MTR_4g109450 99.387 816 5 0 1 816 1 816 0.0 1636
MS.gene044439.t1 MTR_7g028970 87.390 912 109 2 1 912 1 906 0.0 1601
MS.gene044439.t1 MTR_7g012820 51.554 869 393 9 1 853 83 939 0.0 872
MS.gene044439.t1 MTR_7g012820 51.554 869 393 9 1 853 12 868 0.0 871
MS.gene044439.t1 MTR_6g013660 51.557 867 396 8 1 853 79 935 0.0 867
MS.gene044439.t1 MTR_3g106160 49.219 896 425 12 5 883 95 977 0.0 823
MS.gene044439.t1 MTR_2g099075 72.117 477 123 3 400 875 4 471 0.0 672
MS.gene044439.t1 MTR_8g100040 45.478 774 334 11 131 886 222 925 0.0 650
MS.gene044439.t1 MTR_3g102830 46.205 751 325 10 126 858 218 907 0.0 644
MS.gene044439.t1 MTR_3g498725 46.515 746 320 12 131 858 218 902 0.0 643
MS.gene044439.t1 MTR_3g098310 43.855 716 324 12 162 860 296 950 0.0 565
MS.gene044439.t1 MTR_2g006950 68.571 420 92 7 461 878 1 382 0.0 546
MS.gene044439.t1 MTR_2g006950 71.774 248 50 3 657 901 365 595 3.01e-107 344
MS.gene044439.t1 MTR_3g098310 45.389 553 235 10 162 707 296 788 7.60e-145 449
MS.gene044439.t1 MTR_3g461000 45.697 337 178 3 534 867 427 761 5.14e-102 336
MS.gene044439.t1 MTR_3g461000 35.109 413 253 7 4 404 3 412 6.33e-67 239
MS.gene044439.t1 MTR_7g096480 73.256 172 22 2 716 887 96 243 1.72e-76 249
MS.gene044439.t1 MTR_7g096480 53.906 128 26 1 530 657 1 95 5.44e-33 128
MS.gene044439.t1 MTR_6g048860 48.810 168 83 2 127 292 99 265 6.88e-45 166
MS.gene044439.t1 MTR_5g098360 77.895 95 20 1 558 652 74 167 5.63e-41 148
MS.gene044439.t1 MTR_1614s0010 41.709 199 109 3 638 835 1 193 1.60e-31 122
MS.gene044439.t1 MTR_1g076440 61.628 86 33 0 631 716 158 243 5.10e-30 121
MS.gene044439.t1 MTR_1g057150 28.239 301 182 11 20 292 26 320 8.86e-22 102
MS.gene044439.t1 MTR_1g090640 27.273 297 181 11 17 285 24 313 3.79e-17 87.0
MS.gene044439.t1 MTR_4g129230 31.364 220 108 8 26 208 32 245 2.14e-14 78.2
MS.gene044439.t1 MTR_2g038200 29.845 258 144 9 20 241 26 282 8.65e-14 76.3
MS.gene044439.t1 MTR_5g071060 25.463 216 129 6 566 754 648 858 6.38e-11 67.0
MS.gene044439.t1 MTR_5g071060 25.463 216 129 6 566 754 681 891 7.26e-11 67.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene044439.t1 AT1G74310 86.696 902 113 4 1 901 1 896 0.0 1603
MS.gene044439.t1 AT1G74310 87.990 816 95 1 1 816 1 813 0.0 1480
MS.gene044439.t1 AT5G15450 50.579 864 408 8 1 853 77 932 0.0 858
MS.gene044439.t1 AT4G14670 66.970 660 176 5 1 658 1 620 0.0 850
MS.gene044439.t1 AT2G25140 49.542 874 415 8 1 859 83 945 0.0 840
MS.gene044439.t1 AT5G50920 46.577 745 320 12 131 858 221 904 0.0 644
MS.gene044439.t1 AT3G48870 45.845 746 325 9 131 858 210 894 0.0 632
MS.gene044439.t1 AT3G48870 45.845 746 325 9 131 858 241 925 0.0 632
MS.gene044439.t1 AT3G48870 45.845 746 325 9 131 858 241 925 0.0 632
MS.gene044439.t1 AT3G48870 45.845 746 325 9 131 858 241 925 0.0 632
MS.gene044439.t1 AT5G51070 38.735 901 435 19 4 851 81 917 0.0 559
MS.gene044439.t1 AT4G14675 50.000 148 42 1 720 867 1 116 1.91e-42 152
MS.gene044439.t1 AT3G45450 47.727 176 74 3 176 350 151 309 6.32e-41 154
MS.gene044439.t1 AT3G52490 31.399 293 163 12 20 293 26 299 9.80e-23 105
MS.gene044439.t1 AT5G57710 30.213 235 134 10 26 234 32 262 2.67e-15 81.3
MS.gene044439.t1 AT1G07200 26.875 160 108 3 570 728 68 219 3.28e-11 67.0

Find 209 sgRNAs with CRISPR-Local

Find 250 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CCAACCTTTCTTTCTCATTT+TGG 0.103964 8.1:+16190706 None:intergenic
CATCTCTTGAGTGGACTTTC+AGG 0.168367 8.1:-16190056 MS.gene044439:CDS
AAGAACAATCCTGTTCTTAT+TGG 0.183649 8.1:-16192247 MS.gene044439:CDS
TTTCAAGCATTGAAGACTTA+TGG 0.255904 8.1:-16192364 MS.gene044439:CDS
GGGAAGCTTGATCCTGTTAT+TGG 0.264082 8.1:-16192319 MS.gene044439:CDS
TTCTTATTCCTTGGTCCAAC+TGG 0.268223 8.1:-16190561 MS.gene044439:CDS
CTCTCTAGCCACCTTCTAAT+TGG 0.271216 8.1:+16189662 None:intergenic
ATGAGATTCATCTTGTTCTT+GGG 0.276920 8.1:-16192009 MS.gene044439:CDS
TCCAGTCGGTTCAACAATTC+TGG 0.285531 8.1:+16189972 None:intergenic
GATGAGATTCATCTTGTTCT+TGG 0.287438 8.1:-16192010 MS.gene044439:CDS
AAGCCGGTGTTGCTGTTTCT+AGG 0.291735 8.1:-16192459 MS.gene044439:CDS
GGCTAACAACCTCGGCTATT+TGG 0.297052 8.1:+16190760 None:intergenic
TAGGTTAATTGCTTTGGATA+TGG 0.306154 8.1:-16192137 MS.gene044439:CDS
TCTTCGTCGCGTCCAATAAC+AGG 0.320228 8.1:+16192307 None:intergenic
CAAGCAATTTCAAACGTTGC+TGG 0.347559 8.1:-16192703 MS.gene044439:CDS
AGCTGTTGATCAGTTAATCT+TGG 0.350267 8.1:-16192521 MS.gene044439:CDS
GGGATTGTTAATGCTGAAAC+TGG 0.353298 8.1:-16189518 MS.gene044439:CDS
AAGGCAGAACTGTGGACTTT+AGG 0.354025 8.1:-16190118 MS.gene044439:CDS
TTGTTTCTTGTGTAGGTGTA+TGG 0.362917 8.1:-16189692 MS.gene044439:intron
TGGTTGCTGGTGCGAAGTAT+AGG 0.370808 8.1:-16192108 MS.gene044439:CDS
AGGAAGTAAGAAGGCATTTC+AGG 0.374785 8.1:-16189995 MS.gene044439:CDS
ACTGGTTCCTTCTTATTCCT+TGG 0.375288 8.1:-16190570 MS.gene044439:CDS
TTGAGATCAAGAGCTGGTTT+AGG 0.379830 8.1:-16190609 MS.gene044439:CDS
AGGTTAATTGCTTTGGATAT+GGG 0.380520 8.1:-16192136 MS.gene044439:CDS
AGAGCTGCGGACCTGCGATA+TGG 0.381156 8.1:-16190882 MS.gene044439:CDS
ATATCGCAGGTCCGCAGCTC+TGG 0.381186 8.1:+16190884 None:intergenic
GAGGGGTAAAGATGGGAAAA+AGG 0.388224 8.1:-16192413 MS.gene044439:CDS
GATATGGGAGCACTGGTTGC+TGG 0.390282 8.1:-16192121 MS.gene044439:CDS
CTAGCAATCTTGCTGATGTT+AGG 0.395088 8.1:-16192156 MS.gene044439:CDS
CTCAATTGCTCATGTGATAG+AGG 0.400181 8.1:+16189930 None:intergenic
GGTTGCTGGTGCGAAGTATA+GGG 0.400576 8.1:-16192107 MS.gene044439:CDS
CCTGTTCTTATTGGTGAGCC+TGG 0.401053 8.1:-16192238 MS.gene044439:CDS
TGATGTTAGGTTAATTGCTT+TGG 0.410605 8.1:-16192143 MS.gene044439:CDS
ATTCTTGAGGATTCTCAGAT+TGG 0.411250 8.1:-16192496 MS.gene044439:CDS
ACCGAAAAGTGATGCTGTTC+AGG 0.411960 8.1:-16189459 MS.gene044439:CDS
GCTGTTGATCAGTTAATCTT+GGG 0.422333 8.1:-16192520 MS.gene044439:CDS
TAGAATTGATGCAAGGTGTA+AGG 0.422834 8.1:+16192753 None:intergenic
GTGCTACCAGGCACTTCATC+TGG 0.425997 8.1:+16192607 None:intergenic
AAGATGCAGCATTTGAAAGA+AGG 0.427986 8.1:-16191868 MS.gene044439:CDS
CTTCTCCAAGTCTTGGATGA+TGG 0.430205 8.1:-16190158 MS.gene044439:CDS
TGTGGCTGAACCTAGTGTTC+CGG 0.430850 8.1:-16191831 MS.gene044439:CDS
CAGCAACGTTTGAAATTGCT+TGG 0.431831 8.1:+16192704 None:intergenic
CACTCTGTATCAAGATTGAT+TGG 0.432459 8.1:-16190441 MS.gene044439:CDS
TTCCTTGGTCCAACTGGTGT+TGG 0.432663 8.1:-16190555 MS.gene044439:CDS
CGTGGACAGCTTCGATGTAT+TGG 0.435873 8.1:-16191929 MS.gene044439:CDS
TCAAGATTGTCAATTTCCTC+AGG 0.437119 8.1:+16191497 None:intergenic
TGCTTTGGATATGGGAGCAC+TGG 0.439570 8.1:-16192128 MS.gene044439:CDS
ATTTGAAAGAAGGTTTCAAC+AGG 0.441868 8.1:-16191858 MS.gene044439:CDS
ATTCATCTTGTTCTTGGGGC+TGG 0.444791 8.1:-16192004 MS.gene044439:CDS
GTCAATTAACAGAAGCTGTA+AGG 0.446297 8.1:-16190247 MS.gene044439:CDS
ATGCTCAGCACCAAGGTTAG+AGG 0.449435 8.1:+16190076 None:intergenic
TTACATTGATGCTGGTCCTA+AGG 0.450753 8.1:-16189576 MS.gene044439:CDS
AAAACAAACGAAGCACTTGC+TGG 0.455382 8.1:-16192820 MS.gene044439:CDS
ACTAAATCAATCGCCTTGTC+AGG 0.457433 8.1:+16191563 None:intergenic
GGAAGTTGATGATGATGAAA+TGG 0.457919 8.1:-16189414 MS.gene044439:CDS
AAGGTTTCAACAGGTTTATG+TGG 0.465704 8.1:-16191849 MS.gene044439:CDS
CACGAGCTAGCAATGACTTC+AGG 0.466831 8.1:-16192793 MS.gene044439:CDS
TTCTCCAAGTCTTGGATGAT+GGG 0.466986 8.1:-16190157 MS.gene044439:CDS
CTACAACGCTTGAGGAGTAT+AGG 0.468012 8.1:-16191904 MS.gene044439:CDS
TGCTCGCGATCGAGTGATGC+AGG 0.469134 8.1:-16190015 MS.gene044439:CDS
AGAGCTCATCTTTGCACTAC+AGG 0.471282 8.1:-16190931 MS.gene044439:CDS
TTGTCTAGTCGGTACATAAC+CGG 0.472293 8.1:-16191716 MS.gene044439:intron
AATCTTGAAGGTAGCACTGA+TGG 0.474434 8.1:-16190828 MS.gene044439:CDS
AATTGACATGTCGGAGTACA+TGG 0.475392 8.1:-16190469 MS.gene044439:CDS
AGGTATGTTGGACATGAAGA+AGG 0.476815 8.1:-16190272 MS.gene044439:CDS
AAAGAAAGGTTGGTTGGACT+TGG 0.479433 8.1:-16190696 MS.gene044439:CDS
TTGGCTCAGAGGATTGTTAG+AGG 0.480511 8.1:-16192187 MS.gene044439:CDS
ATTCTGATTCAGATTCCAAA+TGG 0.480850 8.1:-16189482 MS.gene044439:CDS
CGAAGAATGCTAATTGTATC+CGG 0.481651 8.1:+16191812 None:intergenic
CAACACTCTTCTCCAAGTCT+TGG 0.482364 8.1:-16190165 MS.gene044439:CDS
TTGATAAGCGCGGTGCTACC+AGG 0.482529 8.1:+16192595 None:intergenic
TAGAAGGTGGCTAGAGAGGA+AGG 0.489310 8.1:-16189657 MS.gene044439:CDS
GGTGATTTGTTTAAAGAAGC+CGG 0.497778 8.1:-16192475 MS.gene044439:CDS
CAATTAGAAGGTGGCTAGAG+AGG 0.498681 8.1:-16189661 MS.gene044439:CDS
GGAAGACCTCAACAACCAAC+TGG 0.500438 8.1:-16190588 MS.gene044439:CDS
AGAGACTTGGTTGAACAAGC+AGG 0.500744 8.1:-16192340 MS.gene044439:CDS
AGTATAGTAAAGAGAAAGAG+AGG 0.501091 8.1:-16190989 MS.gene044439:CDS
AATGAGAAAGAAAGGTTGGT+TGG 0.503006 8.1:-16190702 MS.gene044439:CDS
AGATTGATTGGTGCACCACC+AGG 0.503361 8.1:-16190429 MS.gene044439:CDS
CCAGGCTCACCAATAAGAAC+AGG 0.503576 8.1:+16192238 None:intergenic
GATACAATTAGCATTCTTCG+TGG 0.503772 8.1:-16191809 MS.gene044439:CDS
AGGTTGTGACAGAGCTGTCT+AGG 0.503837 8.1:-16189637 MS.gene044439:CDS
CTTATTGGTGAGCCTGGTGT+TGG 0.504009 8.1:-16192232 MS.gene044439:CDS
AGCCGGTGTTGCTGTTTCTA+GGG 0.504464 8.1:-16192458 MS.gene044439:CDS
TGAGATTCATCTTGTTCTTG+GGG 0.504648 8.1:-16192008 MS.gene044439:CDS
AGTTGAAGAAGCTGAAGGGA+AGG 0.506548 8.1:-16192047 MS.gene044439:CDS
GAAAAGCTGAGGGGTAAAGA+TGG 0.507731 8.1:-16192421 MS.gene044439:CDS
TGAATTTGAGGAGAGGTTGA+AGG 0.507933 8.1:-16192083 MS.gene044439:CDS
AAAGAAGTTGAAGAAGCTGA+AGG 0.507975 8.1:-16192052 MS.gene044439:CDS
GTTAATCTTGGGAATTCTTG+AGG 0.510532 8.1:-16192509 MS.gene044439:CDS
TGGATTAAAAGAGAGATATG+AGG 0.510884 8.1:-16191789 MS.gene044439:CDS
ACAACGGTTTACATTGATGC+TGG 0.514218 8.1:-16189584 MS.gene044439:CDS
CTAATTGTATCCGGAACACT+AGG 0.517001 8.1:+16191821 None:intergenic
CCAAAATGAGAAAGAAAGGT+TGG 0.517592 8.1:-16190706 MS.gene044439:CDS
GAAGTATAGGGGTGAATTTG+AGG 0.518020 8.1:-16192095 MS.gene044439:CDS
AGCTGTCCACGAGCAAGCAT+TGG 0.520046 8.1:+16191941 None:intergenic
TACATTGATGCTGGTCCTAA+GGG 0.520358 8.1:-16189575 MS.gene044439:CDS
ACCTCCCATCATCCAAGACT+TGG 0.521134 8.1:+16190153 None:intergenic
TAGCCGATGGACTGGTATAC+CGG 0.521383 8.1:-16190742 MS.gene044439:CDS
AGACTGCACACTAGAGTTGT+GGG 0.523577 8.1:-16190669 MS.gene044439:CDS
AAAAGCTGAGGGGTAAAGAT+GGG 0.524371 8.1:-16192420 MS.gene044439:CDS
GGCGATTGATTTAGTTGATG+AGG 0.524818 8.1:-16191555 MS.gene044439:CDS
GCTTGGAAGAAAATACCGTT+AGG 0.527952 8.1:+16192721 None:intergenic
GCATACCGTGTAGAAAAGAA+TGG 0.529493 8.1:-16189542 MS.gene044439:CDS
ACAACCTCGGCTATTTGGTC+CGG 0.530467 8.1:+16190765 None:intergenic
TATGCTAAATCACTTCCCTT+AGG 0.532281 8.1:+16189560 None:intergenic
TTACTATACTTCATCTTCAG+AGG 0.533219 8.1:+16191002 None:intergenic
ATAGGGGTGAATTTGAGGAG+AGG 0.533373 8.1:-16192090 MS.gene044439:CDS
TTGGCCAAAATGAGAAAGAA+AGG 0.533425 8.1:-16190710 MS.gene044439:CDS
GGTTGCAAGGTTGCAAATGA+AGG 0.533779 8.1:-16189904 MS.gene044439:CDS
AAGGAACCAGTTGGTTGTTG+AGG 0.534620 8.1:+16190582 None:intergenic
GAGGTTGTTAGCCGATGGAC+TGG 0.535262 8.1:-16190750 MS.gene044439:CDS
ATCATCATGACCTCTAACCT+TGG 0.536499 8.1:-16190086 MS.gene044439:CDS
AGGAAATTGACAATCTTGAA+AGG 0.539527 8.1:-16191493 MS.gene044439:CDS
AACCGCGGTTGTTGAAGGGT+TGG 0.544086 8.1:-16192206 MS.gene044439:CDS
CTAACATCAGCAAGATTGCT+AGG 0.545324 8.1:+16192157 None:intergenic
AGAATTGATGCAAGGTGTAA+GGG 0.547836 8.1:+16192754 None:intergenic
GCCAGAATTGTTGAACCGAC+TGG 0.548964 8.1:-16189973 MS.gene044439:CDS
CAGCAACAGCATTAACCGCC+TGG 0.549246 8.1:+16190640 None:intergenic
ATCACATGAGCAATTGAGAA+AGG 0.549247 8.1:-16189925 MS.gene044439:CDS
AACCCTAGAAACAGCAACAC+CGG 0.556906 8.1:+16192456 None:intergenic
AACTGAGGTTGAAAAGCTGA+GGG 0.557131 8.1:-16192431 MS.gene044439:CDS
GGTATGTTGGACATGAAGAA+GGG 0.557789 8.1:-16190271 MS.gene044439:CDS
CTTGGGGCTGGTAGAACAGA+AGG 0.557876 8.1:-16191992 MS.gene044439:CDS
TCCAAGTCTTGGATGATGGG+AGG 0.558720 8.1:-16190154 MS.gene044439:CDS
GAGAGATATGAGGGTCATCA+TGG 0.559334 8.1:-16191779 MS.gene044439:CDS
GGATTGTTAATGCTGAAACT+GGG 0.559679 8.1:-16189517 MS.gene044439:CDS
TAGAGTTGTGGGACAAGACC+AGG 0.560454 8.1:-16190658 MS.gene044439:CDS
GAAGACTTATGGAAGAGACT+TGG 0.562344 8.1:-16192353 MS.gene044439:CDS
TGTCAAGAAAATGAGAATTG+AGG 0.563545 8.1:-16189435 MS.gene044439:CDS
CTTCAATTGCACCATATCGC+AGG 0.563940 8.1:+16190871 None:intergenic
AAGAAGTTGAAGAAGCTGAA+GGG 0.564464 8.1:-16192051 MS.gene044439:CDS
TGCTGAGAGAGGAATTGCAT+TGG 0.564643 8.1:-16189865 MS.gene044439:CDS
CATACTTACATCTACAAGAC+GGG 0.566138 8.1:+16191406 None:intergenic
GTTGACTGAAACAGTTGGAC+CGG 0.571247 8.1:-16190784 MS.gene044439:CDS
GGACTGGTATACCGGTGACT+AGG 0.572247 8.1:-16190734 MS.gene044439:CDS
ATCTTGAAGGTAGCACTGAT+GGG 0.576475 8.1:-16190827 MS.gene044439:CDS
GGTGCTGAGCATCTCTTGAG+TGG 0.579664 8.1:-16190065 MS.gene044439:CDS
CCAGGCACTTCATCTGGTGG+AGG 0.580312 8.1:+16192613 None:intergenic
CAGACTGCACACTAGAGTTG+TGG 0.580593 8.1:-16190670 MS.gene044439:CDS
TAGCCGAGGTTGTTAGCCGA+TGG 0.581783 8.1:-16190755 MS.gene044439:CDS
GGTATACCGGTGACTAGGCT+TGG 0.582136 8.1:-16190729 MS.gene044439:CDS
CCTCCACCAGATGAAGTGCC+TGG 0.583174 8.1:-16192613 MS.gene044439:CDS
TTGCAGCTCAATTGTCTAGT+CGG 0.583231 8.1:-16191727 MS.gene044439:CDS
CTACCAGGCACTTCATCTGG+TGG 0.583721 8.1:+16192610 None:intergenic
TTTAAACCAATGCTTGCTCG+TGG 0.585207 8.1:-16191947 MS.gene044439:CDS
GAGTGATGCAGGAAGTAAGA+AGG 0.587622 8.1:-16190004 MS.gene044439:CDS
TAACAGAAGCTGTAAGGAGA+AGG 0.589440 8.1:-16190241 MS.gene044439:CDS
AGCAATTGAGAAAGGTTGCA+AGG 0.593285 8.1:-16189917 MS.gene044439:CDS
AGAGGATTGATGAGATTCGA+AGG 0.595177 8.1:-16190971 MS.gene044439:CDS
TTGTTGAAGGGTTGGCTCAG+AGG 0.595730 8.1:-16192198 MS.gene044439:CDS
TGGTAAAACTGAGCTTGCAA+AGG 0.600639 8.1:-16190535 MS.gene044439:CDS
ATTCTAGTTTCTGATCCTAA+CGG 0.601379 8.1:-16192736 MS.gene044439:CDS
AAACTGAGGTTGAAAAGCTG+AGG 0.602048 8.1:-16192432 MS.gene044439:CDS
TATTGGTGCTACAACGCTTG+AGG 0.605062 8.1:-16191912 MS.gene044439:CDS
AGTTGGACCAAGGAATAAGA+AGG 0.606835 8.1:+16190563 None:intergenic
TTAATGTTGACTGAAACAGT+TGG 0.611185 8.1:-16190789 MS.gene044439:CDS
GGCGGTTAATGCTGTTGCTG+AGG 0.611492 8.1:-16190637 MS.gene044439:CDS
TGTTTCTAGGGTTAAAACTG+AGG 0.616506 8.1:-16192446 MS.gene044439:CDS
TACCGTGTAGAAAAGAATGG+AGG 0.617392 8.1:-16189539 MS.gene044439:CDS
GGATTAAAAGAGAGATATGA+GGG 0.617828 8.1:-16191788 MS.gene044439:CDS
CAATTCCTCTCTCAGCAAGA+CGG 0.617980 8.1:+16189871 None:intergenic
GCTAGCCGTCTTGCTGAGAG+AGG 0.619045 8.1:-16189876 MS.gene044439:CDS
CCATACTTACATCTACAAGA+CGG 0.619404 8.1:+16191405 None:intergenic
TACCAACACCAGTTGGACCA+AGG 0.623035 8.1:+16190553 None:intergenic
TCATGCTCTAGAGAAAGAGA+AGG 0.626681 8.1:-16191444 MS.gene044439:CDS
GAGACTTGGTTGAACAAGCA+GGG 0.628162 8.1:-16192339 MS.gene044439:CDS
ATTTGATGATGAAAATCAGT+TGG 0.628949 8.1:-16190496 MS.gene044439:CDS
ACCGTGTAGAAAAGAATGGA+GGG 0.629952 8.1:-16189538 MS.gene044439:CDS
AGGAATAAGAAGGAACCAGT+TGG 0.632548 8.1:+16190573 None:intergenic
GGGAGGTTGACTGACGGACA+AGG 0.633232 8.1:-16190137 MS.gene044439:CDS
TCGATCGCGAGCAACTTGCA+TGG 0.634377 8.1:+16190025 None:intergenic
GCTGTATTGAGATCAAGAGC+TGG 0.635226 8.1:-16190615 MS.gene044439:CDS
TCTGGTGGAGGTGATTGAGA+TGG 0.640106 8.1:+16192625 None:intergenic
AAGAGATTCGAAGAGTTGTG+AGG 0.646944 8.1:-16192288 MS.gene044439:CDS
GTTGGTGAGAATTGACATGT+CGG 0.648441 8.1:-16190478 MS.gene044439:CDS
ATGGTGCTAGACCAATTAGA+AGG 0.648738 8.1:-16189673 MS.gene044439:CDS
AGGGCGTCATCTACCTGACA+AGG 0.649063 8.1:-16191576 MS.gene044439:CDS
AGCCAACCCTTCAACAACCG+CGG 0.649201 8.1:+16192204 None:intergenic
CAGAAACTAGAATTGATGCA+AGG 0.649347 8.1:+16192746 None:intergenic
TGGTAGAACAGAAGGATCGA+TGG 0.650995 8.1:-16191984 MS.gene044439:CDS
GTATGTTGGACATGAAGAAG+GGG 0.651475 8.1:-16190270 MS.gene044439:CDS
TGCATTGGCAGTAACAGATG+CGG 0.653933 8.1:-16189850 MS.gene044439:CDS
ATATGGTGCAATTGAAGAGG+TGG 0.654225 8.1:-16190865 MS.gene044439:CDS
TCACCGGTATACCAGTCCAT+CGG 0.655399 8.1:+16190739 None:intergenic
AGAAATTGATGAAAATACAA+CGG 0.657908 8.1:-16189600 MS.gene044439:CDS
AAGGTTGCAAATGAAGGATG+TGG 0.660475 8.1:-16189898 MS.gene044439:CDS
ACGAATCGCTTTGATAAGCG+CGG 0.664960 8.1:+16192585 None:intergenic
ATACAACAACTTCGTCCAGT+CGG 0.665392 8.1:+16189958 None:intergenic
GTTGCTGGTGCGAAGTATAG+GGG 0.666198 8.1:-16192106 MS.gene044439:CDS
TCAAGAGATGCTCAGCACCA+AGG 0.666994 8.1:+16190069 None:intergenic
AGTCCATCGGCTAACAACCT+CGG 0.668166 8.1:+16190752 None:intergenic
CACTACAGGAGGCAGAGAGG+CGG 0.668262 8.1:-16190917 MS.gene044439:CDS
GTGCTAGACCAATTAGAAGG+TGG 0.668833 8.1:-16189670 MS.gene044439:CDS
GCTCATCTTTGCACTACAGG+AGG 0.670257 8.1:-16190928 MS.gene044439:CDS
GATTGTTAATGCTGAAACTG+GGG 0.676690 8.1:-16189516 MS.gene044439:CDS
TGACGGACAAGGCAGAACTG+TGG 0.678310 8.1:-16190126 MS.gene044439:CDS
GTATGATCTAGCCAGAGCTG+CGG 0.683383 8.1:-16190895 MS.gene044439:CDS
TCAACTTGATAGTCAGCCTG+AGG 0.685328 8.1:-16191513 MS.gene044439:CDS
GATTGATTGGTGCACCACCA+GGG 0.685797 8.1:-16190428 MS.gene044439:intron
GCGATATGGTGCAATTGAAG+AGG 0.687694 8.1:-16190868 MS.gene044439:CDS
CAAGCTGCACAGAAATCACG+TGG 0.691575 8.1:-16192556 MS.gene044439:CDS
AATCTAATAACTTACCCTGG+TGG 0.704597 8.1:+16190414 None:intergenic
TGGACCGGACCAAATAGCCG+AGG 0.708477 8.1:-16190769 MS.gene044439:CDS
TATGTTGGACATGAAGAAGG+GGG 0.714139 8.1:-16190269 MS.gene044439:CDS
TTGCACTACAGGAGGCAGAG+AGG 0.722486 8.1:-16190920 MS.gene044439:CDS
GATGATGGGAGGTTGACTGA+CGG 0.725487 8.1:-16190143 MS.gene044439:CDS
ACTGAGGTTGAAAAGCTGAG+GGG 0.737026 8.1:-16192430 MS.gene044439:CDS
AGTTGTGGGACAAGACCAGG+CGG 0.784379 8.1:-16190655 MS.gene044439:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATAATATCATCTTATTCTTT+AGG - chr8.1:16192475-16192494 MS.gene044439:CDS 15.0%
!! GAATAAAATTTGACTAAATA+AGG + chr8.1:16190984-16191003 None:intergenic 15.0%
!! TATAATATAATAACACTTAC+TGG + chr8.1:16192458-16192477 None:intergenic 15.0%
!!! TATTAGTCTAAATAATATTC+AGG + chr8.1:16191866-16191885 None:intergenic 15.0%
!! AGAAATTGATGAAAATACAA+CGG - chr8.1:16192650-16192669 MS.gene044439:CDS 20.0%
!! ATAGAATATTTCAGACAAAA+TGG - chr8.1:16192500-16192519 MS.gene044439:CDS 20.0%
!! TTAATAAACATTCTAGTATG+TGG - chr8.1:16191917-16191936 MS.gene044439:CDS 20.0%
! ACTGCAATTAAAAATCTTGA+AGG - chr8.1:16191410-16191429 MS.gene044439:intron 25.0%
! AGAGAATATAAAGAACATAC+CGG + chr8.1:16190556-16190575 None:intergenic 25.0%
! CATCAAAATTAATGCTATCA+TGG + chr8.1:16190916-16190935 None:intergenic 25.0%
! CTAAGTACATAACTATATTG+TGG - chr8.1:16191081-16191100 MS.gene044439:intron 25.0%
!! TCATTTTGCATTGAATTTTC+AGG - chr8.1:16191958-16191977 MS.gene044439:CDS 25.0%
!!! ATTTGATGATGAAAATCAGT+TGG - chr8.1:16191754-16191773 MS.gene044439:CDS 25.0%
AAGAACAATCCTGTTCTTAT+TGG - chr8.1:16190003-16190022 MS.gene044439:CDS 30.0%
AGGAAATTGACAATCTTGAA+AGG - chr8.1:16190757-16190776 MS.gene044439:CDS 30.0%
AGTACATAACTATATTGTGG+TGG - chr8.1:16191084-16191103 MS.gene044439:intron 30.0%
AGTATAGTAAAGAGAAAGAG+AGG - chr8.1:16191261-16191280 MS.gene044439:intron 30.0%
ATGAGATTCATCTTGTTCTT+GGG - chr8.1:16190241-16190260 MS.gene044439:CDS 30.0%
ATTCTGATTCAGATTCCAAA+TGG - chr8.1:16192768-16192787 MS.gene044439:CDS 30.0%
ATTTGAAAGAAGGTTTCAAC+AGG - chr8.1:16190392-16190411 MS.gene044439:intron 30.0%
GGATTAAAAGAGAGATATGA+GGG - chr8.1:16190462-16190481 MS.gene044439:CDS 30.0%
TAGTGGCTAATAATACTAAC+TGG - chr8.1:16192523-16192542 MS.gene044439:CDS 30.0%
TATTTCAGACAAAATGGTAG+TGG - chr8.1:16192506-16192525 MS.gene044439:CDS 30.0%
TGATGTTAGGTTAATTGCTT+TGG - chr8.1:16190107-16190126 MS.gene044439:CDS 30.0%
TGGATTAAAAGAGAGATATG+AGG - chr8.1:16190461-16190480 MS.gene044439:CDS 30.0%
TGTCAAGAAAATGAGAATTG+AGG - chr8.1:16192815-16192834 MS.gene044439:CDS 30.0%
TTACTATACTTCATCTTCAG+AGG + chr8.1:16191251-16191270 None:intergenic 30.0%
! AGGTTAATTGCTTTGGATAT+GGG - chr8.1:16190114-16190133 MS.gene044439:CDS 30.0%
! GTTTTGTGAGTAAATTTCTC+TGG + chr8.1:16189415-16189434 None:intergenic 30.0%
! TAGGTTAATTGCTTTGGATA+TGG - chr8.1:16190113-16190132 MS.gene044439:CDS 30.0%
! TCAAAAAGTACAACACTGTA+TGG + chr8.1:16192035-16192054 None:intergenic 30.0%
! TTAACTCTAGCTACTAGTTT+AGG + chr8.1:16191890-16191909 None:intergenic 30.0%
! TTAATGTTGACTGAAACAGT+TGG - chr8.1:16191461-16191480 MS.gene044439:CDS 30.0%
!! ATGTGTTTTGGATGTGTTAA+GGG - chr8.1:16190655-16190674 MS.gene044439:CDS 30.0%
!! ATTCTAGTTTCTGATCCTAA+CGG - chr8.1:16189514-16189533 MS.gene044439:CDS 30.0%
!! GTTATTGTTGTTTCTTGTGT+AGG - chr8.1:16192551-16192570 MS.gene044439:CDS 30.0%
!! TATGTGTTTTGGATGTGTTA+AGG - chr8.1:16190654-16190673 MS.gene044439:CDS 30.0%
!! TTTCAAGCATTGAAGACTTA+TGG - chr8.1:16189886-16189905 MS.gene044439:CDS 30.0%
!!! CATTGAATTTTCAGGTATGT+TGG - chr8.1:16191966-16191985 MS.gene044439:CDS 30.0%
AAAGAAGTTGAAGAAGCTGA+AGG - chr8.1:16190198-16190217 MS.gene044439:CDS 35.0%
AAGAAGTTGAAGAAGCTGAA+GGG - chr8.1:16190199-16190218 MS.gene044439:CDS 35.0%
AAGATGCAGCATTTGAAAGA+AGG - chr8.1:16190382-16190401 MS.gene044439:intron 35.0%
AAGGTTTCAACAGGTTTATG+TGG - chr8.1:16190401-16190420 MS.gene044439:intron 35.0%
AATCTAATAACTTACCCTGG+TGG + chr8.1:16191839-16191858 None:intergenic 35.0%
ACGAATCTAATAACTTACCC+TGG + chr8.1:16191842-16191861 None:intergenic 35.0%
AGAATTGATGCAAGGTGTAA+GGG + chr8.1:16189499-16189518 None:intergenic 35.0%
AGCTGTTGATCAGTTAATCT+TGG - chr8.1:16189729-16189748 MS.gene044439:intron 35.0%
ATCACATGAGCAATTGAGAA+AGG - chr8.1:16192325-16192344 MS.gene044439:CDS 35.0%
ATTCTTGAGGATTCTCAGAT+TGG - chr8.1:16189754-16189773 MS.gene044439:intron 35.0%
CACTCTGTATCAAGATTGAT+TGG - chr8.1:16191809-16191828 MS.gene044439:CDS 35.0%
CACTTGTGTTTATGCTAACA+TGG - chr8.1:16190631-16190650 MS.gene044439:CDS 35.0%
CAGAAACTAGAATTGATGCA+AGG + chr8.1:16189507-16189526 None:intergenic 35.0%
CATACTTACATCTACAAGAC+GGG + chr8.1:16190847-16190866 None:intergenic 35.0%
CCAAAATGAGAAAGAAAGGT+TGG - chr8.1:16191544-16191563 MS.gene044439:CDS 35.0%
CCATACTTACATCTACAAGA+CGG + chr8.1:16190848-16190867 None:intergenic 35.0%
CGAAGAATGCTAATTGTATC+CGG + chr8.1:16190441-16190460 None:intergenic 35.0%
GATACAATTAGCATTCTTCG+TGG - chr8.1:16190441-16190460 MS.gene044439:CDS 35.0%
GATGAGATTCATCTTGTTCT+TGG - chr8.1:16190240-16190259 MS.gene044439:CDS 35.0%
GATTGTTAATGCTGAAACTG+GGG - chr8.1:16192734-16192753 MS.gene044439:CDS 35.0%
GCTGTTGATCAGTTAATCTT+GGG - chr8.1:16189730-16189749 MS.gene044439:intron 35.0%
GGATTGTTAATGCTGAAACT+GGG - chr8.1:16192733-16192752 MS.gene044439:CDS 35.0%
GTCAATTAACAGAAGCTGTA+AGG - chr8.1:16192003-16192022 MS.gene044439:CDS 35.0%
GTTAATCTTGGGAATTCTTG+AGG - chr8.1:16189741-16189760 MS.gene044439:intron 35.0%
TAGAATTGATGCAAGGTGTA+AGG + chr8.1:16189500-16189519 None:intergenic 35.0%
TATGCTAAATCACTTCCCTT+AGG + chr8.1:16192693-16192712 None:intergenic 35.0%
TCAAGATTGTCAATTTCCTC+AGG + chr8.1:16190756-16190775 None:intergenic 35.0%
TGAGATTCATCTTGTTCTTG+GGG - chr8.1:16190242-16190261 MS.gene044439:CDS 35.0%
TTGGCCAAAATGAGAAAGAA+AGG - chr8.1:16191540-16191559 MS.gene044439:CDS 35.0%
! AATGAGAAAGAAAGGTTGGT+TGG - chr8.1:16191548-16191567 MS.gene044439:CDS 35.0%
! CCAACCTTTCTTTCTCATTT+TGG + chr8.1:16191547-16191566 None:intergenic 35.0%
! TGATAGTTGATGTTATTCGC+AGG - chr8.1:16191187-16191206 MS.gene044439:intron 35.0%
! TGCTAACATGGTATGTGTTT+TGG - chr8.1:16190643-16190662 MS.gene044439:CDS 35.0%
! TTGTGAGGATTTTGTCAAGA+AGG - chr8.1:16189977-16189996 MS.gene044439:CDS 35.0%
! TTGTTTCTTGTGTAGGTGTA+TGG - chr8.1:16192558-16192577 MS.gene044439:CDS 35.0%
!! AAAAAGGTTGAAAGTGCTTC+TGG - chr8.1:16189853-16189872 MS.gene044439:CDS 35.0%
!! GGAAGTTGATGATGATGAAA+TGG - chr8.1:16192836-16192855 MS.gene044439:CDS 35.0%
!! GGTGATTTGTTTAAAGAAGC+CGG - chr8.1:16189775-16189794 MS.gene044439:intron 35.0%
!! TGTTTCTAGGGTTAAAACTG+AGG - chr8.1:16189804-16189823 MS.gene044439:intron 35.0%
AAAAGCTGAGGGGTAAAGAT+GGG - chr8.1:16189830-16189849 MS.gene044439:CDS 40.0%
AAACTGAGGTTGAAAAGCTG+AGG - chr8.1:16189818-16189837 MS.gene044439:CDS 40.0%
AACTGAGGTTGAAAAGCTGA+GGG - chr8.1:16189819-16189838 MS.gene044439:CDS 40.0%
AAGAGATTCGAAGAGTTGTG+AGG - chr8.1:16189962-16189981 MS.gene044439:CDS 40.0%
AAGGTTGCAAATGAAGGATG+TGG - chr8.1:16192352-16192371 MS.gene044439:CDS 40.0%
AATTGACATGTCGGAGTACA+TGG - chr8.1:16191781-16191800 MS.gene044439:CDS 40.0%
ACAACGGTTTACATTGATGC+TGG - chr8.1:16192666-16192685 MS.gene044439:CDS 40.0%
ACCGTGTAGAAAAGAATGGA+GGG - chr8.1:16192712-16192731 MS.gene044439:CDS 40.0%
ACTAAATCAATCGCCTTGTC+AGG + chr8.1:16190690-16190709 None:intergenic 40.0%
AGAGGATTGATGAGATTCGA+AGG - chr8.1:16191279-16191298 MS.gene044439:intron 40.0%
AGCAATTGAGAAAGGTTGCA+AGG - chr8.1:16192333-16192352 MS.gene044439:CDS 40.0%
AGGAATAAGAAGGAACCAGT+TGG + chr8.1:16191680-16191699 None:intergenic 40.0%
AGGTATGTTGGACATGAAGA+AGG - chr8.1:16191978-16191997 MS.gene044439:CDS 40.0%
AGTTGGACCAAGGAATAAGA+AGG + chr8.1:16191690-16191709 None:intergenic 40.0%
ATACAACAACTTCGTCCAGT+CGG + chr8.1:16192295-16192314 None:intergenic 40.0%
ATATGGTGCAATTGAAGAGG+TGG - chr8.1:16191385-16191404 MS.gene044439:intron 40.0%
ATCATCATGACCTCTAACCT+TGG - chr8.1:16192164-16192183 MS.gene044439:CDS 40.0%
CAAGCAATTTCAAACGTTGC+TGG - chr8.1:16189547-16189566 MS.gene044439:CDS 40.0%
CCGTCTTGTAGATGTAAGTA+TGG - chr8.1:16190845-16190864 MS.gene044439:CDS 40.0%
CTAACATCAGCAAGATTGCT+AGG + chr8.1:16190096-16190115 None:intergenic 40.0%
CTAATTGTATCCGGAACACT+AGG + chr8.1:16190432-16190451 None:intergenic 40.0%
CTAGCAATCTTGCTGATGTT+AGG - chr8.1:16190094-16190113 MS.gene044439:CDS 40.0%
CTCAATTGCTCATGTGATAG+AGG + chr8.1:16192323-16192342 None:intergenic 40.0%
GAAGACTTATGGAAGAGACT+TGG - chr8.1:16189897-16189916 MS.gene044439:CDS 40.0%
GAAGTATAGGGGTGAATTTG+AGG - chr8.1:16190155-16190174 MS.gene044439:CDS 40.0%
GCATACCGTGTAGAAAAGAA+TGG - chr8.1:16192708-16192727 MS.gene044439:CDS 40.0%
GCTTGGAAGAAAATACCGTT+AGG + chr8.1:16189532-16189551 None:intergenic 40.0%
GGGATTGTTAATGCTGAAAC+TGG - chr8.1:16192732-16192751 MS.gene044439:CDS 40.0%
GGTATGTTGGACATGAAGAA+GGG - chr8.1:16191979-16191998 MS.gene044439:CDS 40.0%
GTATGTTGGACATGAAGAAG+GGG - chr8.1:16191980-16191999 MS.gene044439:CDS 40.0%
GTTGATGTTATTCGCAGGTA+CGG - chr8.1:16191192-16191211 MS.gene044439:intron 40.0%
TAACAGAAGCTGTAAGGAGA+AGG - chr8.1:16192009-16192028 MS.gene044439:CDS 40.0%
TACATTGATGCTGGTCCTAA+GGG - chr8.1:16192675-16192694 MS.gene044439:CDS 40.0%
TACCGTGTAGAAAAGAATGG+AGG - chr8.1:16192711-16192730 MS.gene044439:CDS 40.0%
TATGTTGGACATGAAGAAGG+GGG - chr8.1:16191981-16192000 MS.gene044439:CDS 40.0%
TGAATTTGAGGAGAGGTTGA+AGG - chr8.1:16190167-16190186 MS.gene044439:CDS 40.0%
TGGTAAAACTGAGCTTGCAA+AGG - chr8.1:16191715-16191734 MS.gene044439:intron 40.0%
TTACATTGATGCTGGTCCTA+AGG - chr8.1:16192674-16192693 MS.gene044439:CDS 40.0%
TTCTCCAAGTCTTGGATGAT+GGG - chr8.1:16192093-16192112 MS.gene044439:CDS 40.0%
TTCTTATTCCTTGGTCCAAC+TGG - chr8.1:16191689-16191708 MS.gene044439:intron 40.0%
TTGCAGCTCAATTGTCTAGT+CGG - chr8.1:16190523-16190542 MS.gene044439:CDS 40.0%
TTGTCTAGTCGGTACATAAC+CGG - chr8.1:16190534-16190553 MS.gene044439:CDS 40.0%
TTTAAACCAATGCTTGCTCG+TGG - chr8.1:16190303-16190322 MS.gene044439:intron 40.0%
! AAAACAAACGAAGCACTTGC+TGG - chr8.1:16189430-16189449 MS.gene044439:CDS 40.0%
! AAAGAAAGGTTGGTTGGACT+TGG - chr8.1:16191554-16191573 MS.gene044439:CDS 40.0%
! AATCTTGAAGGTAGCACTGA+TGG - chr8.1:16191422-16191441 MS.gene044439:CDS 40.0%
! ACTGGTTCCTTCTTATTCCT+TGG - chr8.1:16191680-16191699 MS.gene044439:intron 40.0%
! ATGGTGCTAGACCAATTAGA+AGG - chr8.1:16192577-16192596 MS.gene044439:CDS 40.0%
! CAGCAACGTTTGAAATTGCT+TGG + chr8.1:16189549-16189568 None:intergenic 40.0%
! GGCGATTGATTTAGTTGATG+AGG - chr8.1:16190695-16190714 MS.gene044439:CDS 40.0%
! GTTGGTGAGAATTGACATGT+CGG - chr8.1:16191772-16191791 MS.gene044439:CDS 40.0%
! TCAGTTTTACCAACACCAGT+TGG + chr8.1:16191707-16191726 None:intergenic 40.0%
! TCCCTCCATTCTTTTCTACA+CGG + chr8.1:16192716-16192735 None:intergenic 40.0%
! TTGAGATCAAGAGCTGGTTT+AGG - chr8.1:16191641-16191660 MS.gene044439:intron 40.0%
!! AGGAAGTAAGAAGGCATTTC+AGG - chr8.1:16192255-16192274 MS.gene044439:CDS 40.0%
!! ATCTTGAAGGTAGCACTGAT+GGG - chr8.1:16191423-16191442 MS.gene044439:CDS 40.0%
!! TCATGCTCTAGAGAAAGAGA+AGG - chr8.1:16190806-16190825 MS.gene044439:CDS 40.0%
AACCCTAGAAACAGCAACAC+CGG + chr8.1:16189797-16189816 None:intergenic 45.0%
AAGGAACCAGTTGGTTGTTG+AGG + chr8.1:16191671-16191690 None:intergenic 45.0%
AAGGCAGAACTGTGGACTTT+AGG - chr8.1:16192132-16192151 MS.gene044439:CDS 45.0%
ACCGAAAAGTGATGCTGTTC+AGG - chr8.1:16192791-16192810 MS.gene044439:CDS 45.0%
ACGAATCGCTTTGATAAGCG+CGG + chr8.1:16189668-16189687 None:intergenic 45.0%
ACTGAGGTTGAAAAGCTGAG+GGG - chr8.1:16189820-16189839 MS.gene044439:CDS 45.0%
AGACTGCACACTAGAGTTGT+GGG - chr8.1:16191581-16191600 MS.gene044439:intron 45.0%
AGAGCTCATCTTTGCACTAC+AGG - chr8.1:16191319-16191338 MS.gene044439:intron 45.0%
AGTTGAAGAAGCTGAAGGGA+AGG - chr8.1:16190203-16190222 MS.gene044439:CDS 45.0%
ATAGGGGTGAATTTGAGGAG+AGG - chr8.1:16190160-16190179 MS.gene044439:CDS 45.0%
ATTCATCTTGTTCTTGGGGC+TGG - chr8.1:16190246-16190265 MS.gene044439:CDS 45.0%
CAACACTCTTCTCCAAGTCT+TGG - chr8.1:16192085-16192104 MS.gene044439:CDS 45.0%
CAATTAGAAGGTGGCTAGAG+AGG - chr8.1:16192589-16192608 MS.gene044439:CDS 45.0%
CAATTCCTCTCTCAGCAAGA+CGG + chr8.1:16192382-16192401 None:intergenic 45.0%
CTCTCTAGCCACCTTCTAAT+TGG + chr8.1:16192591-16192610 None:intergenic 45.0%
CTTCAATTGCACCATATCGC+AGG + chr8.1:16191382-16191401 None:intergenic 45.0%
CTTCTCCAAGTCTTGGATGA+TGG - chr8.1:16192092-16192111 MS.gene044439:CDS 45.0%
GAAAAACCGCGGTTGTTGAA+GGG - chr8.1:16190040-16190059 MS.gene044439:CDS 45.0%
GAAAAGCTGAGGGGTAAAGA+TGG - chr8.1:16189829-16189848 MS.gene044439:CDS 45.0%
GAGAGATATGAGGGTCATCA+TGG - chr8.1:16190471-16190490 MS.gene044439:CDS 45.0%
GAGGGGTAAAGATGGGAAAA+AGG - chr8.1:16189837-16189856 MS.gene044439:CDS 45.0%
GAGTGATGCAGGAAGTAAGA+AGG - chr8.1:16192246-16192265 MS.gene044439:CDS 45.0%
GCGATATGGTGCAATTGAAG+AGG - chr8.1:16191382-16191401 MS.gene044439:intron 45.0%
GCTGTATTGAGATCAAGAGC+TGG - chr8.1:16191635-16191654 MS.gene044439:intron 45.0%
GGGAAGCTTGATCCTGTTAT+TGG - chr8.1:16189931-16189950 MS.gene044439:CDS 45.0%
GGTTGCAAGGTTGCAAATGA+AGG - chr8.1:16192346-16192365 MS.gene044439:CDS 45.0%
GTGCTAGACCAATTAGAAGG+TGG - chr8.1:16192580-16192599 MS.gene044439:CDS 45.0%
GTGCTGCAAATGTGGGATAA+TGG - chr8.1:16191106-16191125 MS.gene044439:intron 45.0%
GTTGACTGAAACAGTTGGAC+CGG - chr8.1:16191466-16191485 MS.gene044439:CDS 45.0%
TGCTGAGAGAGGAATTGCAT+TGG - chr8.1:16192385-16192404 MS.gene044439:CDS 45.0%
TGGTAGAACAGAAGGATCGA+TGG - chr8.1:16190266-16190285 MS.gene044439:CDS 45.0%
TTGGCTCAGAGGATTGTTAG+AGG - chr8.1:16190063-16190082 MS.gene044439:CDS 45.0%
! AGAGACTTGGTTGAACAAGC+AGG - chr8.1:16189910-16189929 MS.gene044439:CDS 45.0%
! CATCTCTTGAGTGGACTTTC+AGG - chr8.1:16192194-16192213 MS.gene044439:CDS 45.0%
! CTACAACGCTTGAGGAGTAT+AGG - chr8.1:16190346-16190365 MS.gene044439:intron 45.0%
! GAGACTTGGTTGAACAAGCA+GGG - chr8.1:16189911-16189930 MS.gene044439:CDS 45.0%
! TCAACTTGATAGTCAGCCTG+AGG - chr8.1:16190737-16190756 MS.gene044439:CDS 45.0%
! TCCAGTCGGTTCAACAATTC+TGG + chr8.1:16192281-16192300 None:intergenic 45.0%
! TGCATTGGCAGTAACAGATG+CGG - chr8.1:16192400-16192419 MS.gene044439:CDS 45.0%
!! GCATCACTTTTCGGTCCATT+TGG + chr8.1:16192786-16192805 None:intergenic 45.0%
!! GCCTGAACAGCATCACTTTT+CGG + chr8.1:16192795-16192814 None:intergenic 45.0%
!! TATTGGTGCTACAACGCTTG+AGG - chr8.1:16190338-16190357 MS.gene044439:intron 45.0%
ACAACCTCGGCTATTTGGTC+CGG + chr8.1:16191488-16191507 None:intergenic 50.0%
ACCTCCCATCATCCAAGACT+TGG + chr8.1:16192100-16192119 None:intergenic 50.0%
AGATTGATTGGTGCACCACC+AGG - chr8.1:16191821-16191840 MS.gene044439:CDS 50.0%
AGGTTGTGACAGAGCTGTCT+AGG - chr8.1:16192613-16192632 MS.gene044439:CDS 50.0%
ATGCTCAGCACCAAGGTTAG+AGG + chr8.1:16192177-16192196 None:intergenic 50.0%
CAAGCTGCACAGAAATCACG+TGG - chr8.1:16189694-16189713 MS.gene044439:intron 50.0%
CACGAGCTAGCAATGACTTC+AGG - chr8.1:16189457-16189476 MS.gene044439:CDS 50.0%
CAGACTGCACACTAGAGTTG+TGG - chr8.1:16191580-16191599 MS.gene044439:intron 50.0%
CCAGGCTCACCAATAAGAAC+AGG + chr8.1:16190015-16190034 None:intergenic 50.0%
CCTGTTCTTATTGGTGAGCC+TGG - chr8.1:16190012-16190031 MS.gene044439:CDS 50.0%
CGTGGACAGCTTCGATGTAT+TGG - chr8.1:16190321-16190340 MS.gene044439:intron 50.0%
CTTATTGGTGAGCCTGGTGT+TGG - chr8.1:16190018-16190037 MS.gene044439:CDS 50.0%
GATTGATTGGTGCACCACCA+GGG - chr8.1:16191822-16191841 MS.gene044439:CDS 50.0%
GCCAGAATTGTTGAACCGAC+TGG - chr8.1:16192277-16192296 MS.gene044439:CDS 50.0%
GCTCATCTTTGCACTACAGG+AGG - chr8.1:16191322-16191341 MS.gene044439:intron 50.0%
GGAAAAACCGCGGTTGTTGA+AGG - chr8.1:16190039-16190058 MS.gene044439:CDS 50.0%
GGAAGACCTCAACAACCAAC+TGG - chr8.1:16191662-16191681 MS.gene044439:intron 50.0%
GGCTAACAACCTCGGCTATT+TGG + chr8.1:16191493-16191512 None:intergenic 50.0%
GGTTGCTGGTGCGAAGTATA+GGG - chr8.1:16190143-16190162 MS.gene044439:CDS 50.0%
GTATGATCTAGCCAGAGCTG+CGG - chr8.1:16191355-16191374 MS.gene044439:intron 50.0%
GTTGCTGGTGCGAAGTATAG+GGG - chr8.1:16190144-16190163 MS.gene044439:CDS 50.0%
TACCAACACCAGTTGGACCA+AGG + chr8.1:16191700-16191719 None:intergenic 50.0%
TAGAAGGTGGCTAGAGAGGA+AGG - chr8.1:16192593-16192612 MS.gene044439:CDS 50.0%
TAGAGTTGTGGGACAAGACC+AGG - chr8.1:16191592-16191611 MS.gene044439:intron 50.0%
TCAAGAGATGCTCAGCACCA+AGG + chr8.1:16192184-16192203 None:intergenic 50.0%
TCACCGGTATACCAGTCCAT+CGG + chr8.1:16191514-16191533 None:intergenic 50.0%
TCTGGTGGAGGTGATTGAGA+TGG + chr8.1:16189628-16189647 None:intergenic 50.0%
TCTTCGTCGCGTCCAATAAC+AGG + chr8.1:16189946-16189965 None:intergenic 50.0%
TGGTTGCTGGTGCGAAGTAT+AGG - chr8.1:16190142-16190161 MS.gene044439:CDS 50.0%
TGTGGCTGAACCTAGTGTTC+CGG - chr8.1:16190419-16190438 MS.gene044439:intron 50.0%
TTCCTTGGTCCAACTGGTGT+TGG - chr8.1:16191695-16191714 MS.gene044439:intron 50.0%
! AGTCCATCGGCTAACAACCT+CGG + chr8.1:16191501-16191520 None:intergenic 50.0%
! TGCTTTGGATATGGGAGCAC+TGG - chr8.1:16190122-16190141 MS.gene044439:CDS 50.0%
! TTTTGGCCAAGCCTAGTCAC+CGG + chr8.1:16191530-16191549 None:intergenic 50.0%
!! AAGCCGGTGTTGCTGTTTCT+AGG - chr8.1:16189791-16189810 MS.gene044439:intron 50.0%
!! AGCCGGTGTTGCTGTTTCTA+GGG - chr8.1:16189792-16189811 MS.gene044439:intron 50.0%
!! GATGATGGGAGGTTGACTGA+CGG - chr8.1:16192107-16192126 MS.gene044439:CDS 50.0%
!! TAGCCGATGGACTGGTATAC+CGG - chr8.1:16191508-16191527 MS.gene044439:CDS 50.0%
!! TCCAAGTCTTGGATGATGGG+AGG - chr8.1:16192096-16192115 MS.gene044439:CDS 50.0%
!! TGTGGTGGTGCTGCAAATGT+GGG - chr8.1:16191099-16191118 MS.gene044439:intron 50.0%
!! TTGTGGTGGTGCTGCAAATG+TGG - chr8.1:16191098-16191117 MS.gene044439:intron 50.0%
!! TTGTTGAAGGGTTGGCTCAG+AGG - chr8.1:16190052-16190071 MS.gene044439:CDS 50.0%
AACCGCGGTTGTTGAAGGGT+TGG - chr8.1:16190044-16190063 MS.gene044439:CDS 55.0%
AGCCAACCCTTCAACAACCG+CGG + chr8.1:16190049-16190068 None:intergenic 55.0%
AGCTGTCCACGAGCAAGCAT+TGG + chr8.1:16190312-16190331 None:intergenic 55.0%
AGTTGTGGGACAAGACCAGG+CGG - chr8.1:16191595-16191614 MS.gene044439:intron 55.0%
CAGCAACAGCATTAACCGCC+TGG + chr8.1:16191613-16191632 None:intergenic 55.0%
CTACCAGGCACTTCATCTGG+TGG + chr8.1:16189643-16189662 None:intergenic 55.0%
GAGGTTGTTAGCCGATGGAC+TGG - chr8.1:16191500-16191519 MS.gene044439:CDS 55.0%
GGCGGTTAATGCTGTTGCTG+AGG - chr8.1:16191613-16191632 MS.gene044439:intron 55.0%
GGTATACCGGTGACTAGGCT+TGG - chr8.1:16191521-16191540 MS.gene044439:CDS 55.0%
GTGCTACCAGGCACTTCATC+TGG + chr8.1:16189646-16189665 None:intergenic 55.0%
TAGCCGAGGTTGTTAGCCGA+TGG - chr8.1:16191495-16191514 MS.gene044439:CDS 55.0%
TCGATCGCGAGCAACTTGCA+TGG + chr8.1:16192228-16192247 None:intergenic 55.0%
TTGCACTACAGGAGGCAGAG+AGG - chr8.1:16191330-16191349 MS.gene044439:intron 55.0%
! ACCGCGGTTTTTCCAACACC+AGG + chr8.1:16190033-16190052 None:intergenic 55.0%
! AGGGCGTCATCTACCTGACA+AGG - chr8.1:16190674-16190693 MS.gene044439:CDS 55.0%
! CTTGGGGCTGGTAGAACAGA+AGG - chr8.1:16190258-16190277 MS.gene044439:CDS 55.0%
! GCCTGGTGTTGGAAAAACCG+CGG - chr8.1:16190029-16190048 MS.gene044439:CDS 55.0%
! GGACTGGTATACCGGTGACT+AGG - chr8.1:16191516-16191535 MS.gene044439:CDS 55.0%
! GGTGCTGAGCATCTCTTGAG+TGG - chr8.1:16192185-16192204 MS.gene044439:CDS 55.0%
! TGACGGACAAGGCAGAACTG+TGG - chr8.1:16192124-16192143 MS.gene044439:CDS 55.0%
!! GATATGGGAGCACTGGTTGC+TGG - chr8.1:16190129-16190148 MS.gene044439:CDS 55.0%
!! TTGATAAGCGCGGTGCTACC+AGG + chr8.1:16189658-16189677 None:intergenic 55.0%
AGAGCTGCGGACCTGCGATA+TGG - chr8.1:16191368-16191387 MS.gene044439:intron 60.0%
ATATCGCAGGTCCGCAGCTC+TGG + chr8.1:16191369-16191388 None:intergenic 60.0%
CACTACAGGAGGCAGAGAGG+CGG - chr8.1:16191333-16191352 MS.gene044439:intron 60.0%
CCAGGCACTTCATCTGGTGG+AGG + chr8.1:16189640-16189659 None:intergenic 60.0%
GCTAGCCGTCTTGCTGAGAG+AGG - chr8.1:16192374-16192393 MS.gene044439:CDS 60.0%
TGCTCGCGATCGAGTGATGC+AGG - chr8.1:16192235-16192254 MS.gene044439:CDS 60.0%
TGGACCGGACCAAATAGCCG+AGG - chr8.1:16191481-16191500 MS.gene044439:CDS 60.0%
! CCTCCACCAGATGAAGTGCC+TGG - chr8.1:16189637-16189656 MS.gene044439:CDS 60.0%
! GGGAGGTTGACTGACGGACA+AGG - chr8.1:16192113-16192132 MS.gene044439:CDS 60.0%


Chromosome Type Strat End Strand Name
chr8.1 gene 16189406 16192866 16189406 ID=MS.gene044439
chr8.1 mRNA 16189406 16192866 16189406 ID=MS.gene044439.t1;Parent=MS.gene044439
chr8.1 exon 16191717 16192866 16191717 ID=MS.gene044439.t1.exon1;Parent=MS.gene044439.t1
chr8.1 CDS 16191717 16192866 16191717 ID=cds.MS.gene044439.t1;Parent=MS.gene044439.t1
chr8.1 exon 16191415 16191596 16191415 ID=MS.gene044439.t1.exon2;Parent=MS.gene044439.t1
chr8.1 CDS 16191415 16191596 16191415 ID=cds.MS.gene044439.t1;Parent=MS.gene044439.t1
chr8.1 exon 16190429 16191063 16190429 ID=MS.gene044439.t1.exon3;Parent=MS.gene044439.t1
chr8.1 CDS 16190429 16191063 16190429 ID=cds.MS.gene044439.t1;Parent=MS.gene044439.t1
chr8.1 exon 16189815 16190292 16189815 ID=MS.gene044439.t1.exon4;Parent=MS.gene044439.t1
chr8.1 CDS 16189815 16190292 16189815 ID=cds.MS.gene044439.t1;Parent=MS.gene044439.t1
chr8.1 exon 16189406 16189699 16189406 ID=MS.gene044439.t1.exon5;Parent=MS.gene044439.t1
chr8.1 CDS 16189406 16189699 16189406 ID=cds.MS.gene044439.t1;Parent=MS.gene044439.t1
Gene Sequence

>MS.gene044439

ATGAATCCAGAGAAATTTACTCACAAAACAAACGAAGCACTTGCTGGTGCACACGAGCTAGCAATGACTTCAGGTCATGCACAAATCACTCCCTTACACCTTGCATCAATTCTAGTTTCTGATCCTAACGGTATTTTCTTCCAAGCAATTTCAAACGTTGCTGGTGAAGAATCAGCACGTGCTGTTGAACGTGTTTTGAAACAAGCATTAAAGAAACTTCCATCTCAATCACCTCCACCAGATGAAGTGCCTGGTAGCACCGCGCTTATCAAAGCGATTCGTAGAGCACAAGCTGCACAGAAATCACGTGGTGATACTCATTTAGCTGTTGATCAGTTAATCTTGGGAATTCTTGAGGATTCTCAGATTGGTGATTTGTTTAAAGAAGCCGGTGTTGCTGTTTCTAGGGTTAAAACTGAGGTTGAAAAGCTGAGGGGTAAAGATGGGAAAAAGGTTGAAAGTGCTTCTGGTGATACGAATTTTCAAGCATTGAAGACTTATGGAAGAGACTTGGTTGAACAAGCAGGGAAGCTTGATCCTGTTATTGGACGCGACGAAGAGATTCGAAGAGTTGTGAGGATTTTGTCAAGAAGGACTAAGAACAATCCTGTTCTTATTGGTGAGCCTGGTGTTGGAAAAACCGCGGTTGTTGAAGGGTTGGCTCAGAGGATTGTTAGAGGTGATGTACCTAGCAATCTTGCTGATGTTAGGTTAATTGCTTTGGATATGGGAGCACTGGTTGCTGGTGCGAAGTATAGGGGTGAATTTGAGGAGAGGTTGAAGGCTGTTTTGAAAGAAGTTGAAGAAGCTGAAGGGAAGGTTATTCTTTTCATTGATGAGATTCATCTTGTTCTTGGGGCTGGTAGAACAGAAGGATCGATGGATGCTGCTAATCTTTTTAAACCAATGCTTGCTCGTGGACAGCTTCGATGTATTGGTGCTACAACGCTTGAGGAGTATAGGAAGTATGTTGAAAAAGATGCAGCATTTGAAAGAAGGTTTCAACAGGTTTATGTGGCTGAACCTAGTGTTCCGGATACAATTAGCATTCTTCGTGGATTAAAAGAGAGATATGAGGGTCATCATGGTGTTCGAATTCAAGATCGTGCGATTGTAGTTGCAGCTCAATTGTCTAGTCGGTACATAACCGGTATGTTCTTTATATTCTCTCTTCATGTTTGTGTGTTTTTGTTATTGATTTTTTATGCATTGAATGTGATGATTTCACTTGTGTTTATGCTAACATGGTATGTGTTTTGGATGTGTTAAGGGCGTCATCTACCTGACAAGGCGATTGATTTAGTTGATGAGGCATGTGCTAATGTGCGAGTTCAACTTGATAGTCAGCCTGAGGAAATTGACAATCTTGAAAGGAAGAGAATGCAACTAGAAGTTGAACTTCATGCTCTAGAGAAAGAGAAGGACAAAGCTAGCAAAGCCCGTCTTGTAGATGTAAGTATGGATGTTAACTTTTTCTTTTAATCAATGATCTCTGAATTCAAATATGCCATGATAGCATTAATTTTGATGATATATTTGACAATGAAGATATATTTATTCATTGACTGATAAATACCTTATTTAGTCAAATTTTATTCATTCAAGTAGATTTAAGCAGATGTACATTAGTTTAGTTTAATTTCATTTGTTCTAAATTAACTTCATTTTTGTAATACTAAGTACATAACTATATTGTGGTGGTGCTGCAAATGTGGGATAATGGTTTAAATTGTGTATCAGTTTTCATTTTATATTGTGTATTTGTAGTACTTCAATGATTCTGATAGTTGATGTTATTCGCAGGTACGGAAAGAACTCGATGACTTGAGAGACAAGCTTCAACCTCTGAAGATGAAGTATAGTAAAGAGAAAGAGAGGATTGATGAGATTCGAAGGCTGAAGCAGAAACGTGAAGAGCTCATCTTTGCACTACAGGAGGCAGAGAGGCGGTATGATCTAGCCAGAGCTGCGGACCTGCGATATGGTGCAATTGAAGAGGTGGAAACTGCAATTAAAAATCTTGAAGGTAGCACTGATGGGAACACTGATGACAACTTAATGTTGACTGAAACAGTTGGACCGGACCAAATAGCCGAGGTTGTTAGCCGATGGACTGGTATACCGGTGACTAGGCTTGGCCAAAATGAGAAAGAAAGGTTGGTTGGACTTGGTGACAGACTGCACACTAGAGTTGTGGGACAAGACCAGGCGGTTAATGCTGTTGCTGAGGCTGTATTGAGATCAAGAGCTGGTTTAGGAAGACCTCAACAACCAACTGGTTCCTTCTTATTCCTTGGTCCAACTGGTGTTGGTAAAACTGAGCTTGCAAAGGCTCTTGCAGAGCAGCTATTTGATGATGAAAATCAGTTGGTGAGAATTGACATGTCGGAGTACATGGAACAACACTCTGTATCAAGATTGATTGGTGCACCACCAGGGTAAGTTATTAGATTCGTACCTGAATATTATTTAGACTAATAGCCTAAACTAGTAGCTAGAGTTAAATATGAATTAATAAACATTCTAGTATGTGGTCTATGAGAACAAGTATCTCATTTTGCATTGAATTTTCAGGTATGTTGGACATGAAGAAGGGGGTCAATTAACAGAAGCTGTAAGGAGAAGGCCATACAGTGTTGTACTTTTTGATGAAGTTGAGAAAGCACACACATCTGTATTCAACACTCTTCTCCAAGTCTTGGATGATGGGAGGTTGACTGACGGACAAGGCAGAACTGTGGACTTTAGGAACACTGTGATCATCATGACCTCTAACCTTGGTGCTGAGCATCTCTTGAGTGGACTTTCAGGAAAATGTACCATGCAAGTTGCTCGCGATCGAGTGATGCAGGAAGTAAGAAGGCATTTCAGGCCAGAATTGTTGAACCGACTGGACGAAGTTGTTGTATTTGATCCTCTATCACATGAGCAATTGAGAAAGGTTGCAAGGTTGCAAATGAAGGATGTGGCTAGCCGTCTTGCTGAGAGAGGAATTGCATTGGCAGTAACAGATGCGGCTCTAGATTATATTCTTGCTGAGAGCTATGATCCAGTAAGTGTTATTATATTATAATATCATCTTATTCTTTAGGATATAGAATATTTCAGACAAAATGGTAGTGGCTAATAATACTAACTGGTTTTTGTTATTGTTGTTTCTTGTGTAGGTGTATGGTGCTAGACCAATTAGAAGGTGGCTAGAGAGGAAGGTTGTGACAGAGCTGTCTAGGATGCTCATAAGAGAAGAAATTGATGAAAATACAACGGTTTACATTGATGCTGGTCCTAAGGGAAGTGATTTAGCATACCGTGTAGAAAAGAATGGAGGGATTGTTAATGCTGAAACTGGGGTGAAGTCTGATATTCTGATTCAGATTCCAAATGGACCGAAAAGTGATGCTGTTCAGGCTGTCAAGAAAATGAGAATTGAGGAAGTTGATGATGATGAAATGGAAGAGTGA

Protein sequence

>MS.gene044439.t1

MNPEKFTHKTNEALAGAHELAMTSGHAQITPLHLASILVSDPNGIFFQAISNVAGEESARAVERVLKQALKKLPSQSPPPDEVPGSTALIKAIRRAQAAQKSRGDTHLAVDQLILGILEDSQIGDLFKEAGVAVSRVKTEVEKLRGKDGKKVESASGDTNFQALKTYGRDLVEQAGKLDPVIGRDEEIRRVVRILSRRTKNNPVLIGEPGVGKTAVVEGLAQRIVRGDVPSNLADVRLIALDMGALVAGAKYRGEFEERLKAVLKEVEEAEGKVILFIDEIHLVLGAGRTEGSMDAANLFKPMLARGQLRCIGATTLEEYRKYVEKDAAFERRFQQVYVAEPSVPDTISILRGLKERYEGHHGVRIQDRAIVVAAQLSSRYITGRHLPDKAIDLVDEACANVRVQLDSQPEEIDNLERKRMQLEVELHALEKEKDKASKARLVDVRKELDDLRDKLQPLKMKYSKEKERIDEIRRLKQKREELIFALQEAERRYDLARAADLRYGAIEEVETAIKNLEGSTDGNTDDNLMLTETVGPDQIAEVVSRWTGIPVTRLGQNEKERLVGLGDRLHTRVVGQDQAVNAVAEAVLRSRAGLGRPQQPTGSFLFLGPTGVGKTELAKALAEQLFDDENQLVRIDMSEYMEQHSVSRLIGAPPGYVGHEEGGQLTEAVRRRPYSVVLFDEVEKAHTSVFNTLLQVLDDGRLTDGQGRTVDFRNTVIIMTSNLGAEHLLSGLSGKCTMQVARDRVMQEVRRHFRPELLNRLDEVVVFDPLSHEQLRKVARLQMKDVASRLAERGIALAVTDAALDYILAESYDPVYGARPIRRWLERKVVTELSRMLIREEIDENTTVYIDAGPKGSDLAYRVEKNGGIVNAETGVKSDILIQIPNGPKSDAVQAVKKMRIEEVDDDEMEE