Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene32689.t1 | XP_003603307.1 | 99.3 | 980 | 7 | 0 | 1 | 980 | 1 | 980 | 0.00E+00 | 1762.7 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene32689.t1 | Q8VYJ7 | 74.9 | 972 | 225 | 4 | 1 | 970 | 1 | 955 | 0.0e+00 | 1335.1 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene32689.t1 | G7J9V8 | 99.3 | 980 | 7 | 0 | 1 | 980 | 1 | 980 | 0.0e+00 | 1762.7 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Gene1 | Gene2 | Type |
---|---|---|
MS.gene06778 | MS.gene32689 | PPI |
MS.gene049405 | MS.gene32689 | PPI |
MS.gene41623 | MS.gene32689 | PPI |
MS.gene32689 | MS.gene06534 | PPI |
MS.gene015097 | MS.gene32689 | PPI |
MS.gene013215 | MS.gene32689 | PPI |
MS.gene32689 | MS.gene021811 | PPI |
MS.gene32689 | MS.gene031135 | PPI |
MS.gene013187 | MS.gene32689 | PPI |
MS.gene32689 | MS.gene86083 | PPI |
MS.gene32689 | MS.gene049185 | PPI |
MS.gene033069 | MS.gene32689 | PPI |
MS.gene32689 | MS.gene000515 | PPI |
MS.gene32689 | MS.gene044439 | PPI |
MS.gene32689 | MS.gene012897 | PPI |
MS.gene06302 | MS.gene32689 | PPI |
MS.gene32689 | MS.gene055539 | PPI |
MS.gene32689 | MS.gene057532 | PPI |
MS.gene32689 | MS.gene063483 | PPI |
MS.gene32689 | MS.gene06260 | PPI |
MS.gene32689 | MS.gene45242 | PPI |
MS.gene97588 | MS.gene32689 | PPI |
MS.gene32689 | MS.gene013434 | PPI |
MS.gene32894 | MS.gene32689 | PPI |
MS.gene030500 | MS.gene32689 | PPI |
MS.gene32689 | MS.gene071279 | PPI |
MS.gene41649 | MS.gene32689 | PPI |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene32689.t1 | MTR_3g106160 | 99.184 | 980 | 8 | 0 | 1 | 980 | 1 | 980 | 0.0 | 1993 |
MS.gene32689.t1 | MTR_7g012820 | 72.881 | 885 | 239 | 1 | 85 | 969 | 77 | 960 | 0.0 | 1364 |
MS.gene32689.t1 | MTR_7g012820 | 73.182 | 880 | 235 | 1 | 90 | 969 | 11 | 889 | 0.0 | 1360 |
MS.gene32689.t1 | MTR_6g013660 | 71.445 | 886 | 246 | 2 | 88 | 970 | 76 | 957 | 0.0 | 1338 |
MS.gene32689.t1 | MTR_4g109450 | 48.996 | 896 | 427 | 12 | 95 | 977 | 5 | 883 | 0.0 | 821 |
MS.gene32689.t1 | MTR_4g109450 | 51.090 | 826 | 379 | 10 | 95 | 910 | 5 | 815 | 0.0 | 795 |
MS.gene32689.t1 | MTR_7g028970 | 48.216 | 869 | 417 | 12 | 123 | 977 | 33 | 882 | 0.0 | 777 |
MS.gene32689.t1 | MTR_8g100040 | 42.062 | 970 | 444 | 16 | 26 | 949 | 5 | 902 | 0.0 | 702 |
MS.gene32689.t1 | MTR_3g498725 | 43.646 | 905 | 407 | 15 | 75 | 949 | 67 | 898 | 0.0 | 702 |
MS.gene32689.t1 | MTR_3g102830 | 44.151 | 872 | 401 | 12 | 96 | 949 | 100 | 903 | 0.0 | 683 |
MS.gene32689.t1 | MTR_3g098310 | 43.680 | 712 | 325 | 11 | 250 | 949 | 297 | 944 | 0.0 | 573 |
MS.gene32689.t1 | MTR_3g098310 | 44.865 | 555 | 236 | 9 | 250 | 797 | 297 | 788 | 1.88e-148 | 460 |
MS.gene32689.t1 | MTR_2g099075 | 40.347 | 461 | 258 | 5 | 489 | 948 | 4 | 448 | 1.05e-101 | 327 |
MS.gene32689.t1 | MTR_3g461000 | 46.462 | 325 | 170 | 1 | 625 | 949 | 428 | 748 | 2.27e-98 | 328 |
MS.gene32689.t1 | MTR_3g461000 | 37.621 | 412 | 239 | 7 | 96 | 493 | 5 | 412 | 3.80e-79 | 275 |
MS.gene32689.t1 | MTR_2g006950 | 42.287 | 376 | 194 | 7 | 551 | 925 | 2 | 355 | 1.39e-83 | 282 |
MS.gene32689.t1 | MTR_2g006950 | 34.348 | 230 | 119 | 7 | 731 | 954 | 350 | 553 | 4.69e-30 | 127 |
MS.gene32689.t1 | MTR_6g048860 | 54.839 | 155 | 65 | 2 | 231 | 381 | 112 | 265 | 2.61e-46 | 170 |
MS.gene32689.t1 | MTR_1g076440 | 59.140 | 93 | 38 | 0 | 713 | 805 | 150 | 242 | 5.18e-31 | 124 |
MS.gene32689.t1 | MTR_3g029990 | 84.058 | 69 | 10 | 1 | 111 | 179 | 501 | 568 | 7.09e-27 | 117 |
MS.gene32689.t1 | MTR_3g029990 | 84.058 | 69 | 10 | 1 | 111 | 179 | 501 | 568 | 7.84e-27 | 117 |
MS.gene32689.t1 | MTR_1614s0010 | 39.306 | 173 | 93 | 4 | 728 | 899 | 1 | 162 | 9.62e-27 | 108 |
MS.gene32689.t1 | MTR_5g098360 | 41.912 | 136 | 68 | 3 | 617 | 742 | 33 | 167 | 2.05e-23 | 98.6 |
MS.gene32689.t1 | MTR_6g013600 | 50.000 | 86 | 43 | 0 | 878 | 963 | 11 | 96 | 3.35e-22 | 92.4 |
MS.gene32689.t1 | MTR_2g029230 | 40.777 | 103 | 55 | 2 | 212 | 314 | 38 | 134 | 1.34e-16 | 77.8 |
MS.gene32689.t1 | MTR_7g096480 | 36.719 | 128 | 48 | 2 | 620 | 747 | 1 | 95 | 7.32e-15 | 75.9 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene32689.t1 | AT2G25140 | 80.694 | 922 | 164 | 4 | 56 | 970 | 41 | 955 | 0.0 | 1520 |
MS.gene32689.t1 | AT5G15450 | 72.085 | 892 | 245 | 2 | 85 | 975 | 71 | 959 | 0.0 | 1349 |
MS.gene32689.t1 | AT1G74310 | 50.060 | 835 | 391 | 8 | 123 | 948 | 33 | 850 | 0.0 | 816 |
MS.gene32689.t1 | AT1G74310 | 50.941 | 797 | 365 | 8 | 123 | 910 | 33 | 812 | 0.0 | 790 |
MS.gene32689.t1 | AT3G48870 | 44.661 | 871 | 398 | 13 | 96 | 949 | 87 | 890 | 0.0 | 709 |
MS.gene32689.t1 | AT3G48870 | 44.432 | 871 | 400 | 12 | 96 | 949 | 118 | 921 | 0.0 | 707 |
MS.gene32689.t1 | AT3G48870 | 44.432 | 871 | 400 | 12 | 96 | 949 | 118 | 921 | 0.0 | 707 |
MS.gene32689.t1 | AT3G48870 | 44.432 | 871 | 400 | 12 | 96 | 949 | 118 | 921 | 0.0 | 707 |
MS.gene32689.t1 | AT5G50920 | 44.598 | 870 | 399 | 10 | 96 | 949 | 98 | 900 | 0.0 | 707 |
MS.gene32689.t1 | AT4G14670 | 52.120 | 566 | 249 | 6 | 188 | 750 | 76 | 622 | 0.0 | 550 |
MS.gene32689.t1 | AT5G51070 | 49.408 | 338 | 163 | 2 | 629 | 958 | 594 | 931 | 8.60e-105 | 349 |
MS.gene32689.t1 | AT5G51070 | 38.514 | 444 | 234 | 9 | 96 | 501 | 83 | 525 | 9.32e-80 | 280 |
MS.gene32689.t1 | AT3G45450 | 35.211 | 355 | 169 | 9 | 96 | 439 | 5 | 309 | 5.66e-46 | 169 |
MS.gene32689.t1 | AT4G30350 | 23.826 | 575 | 350 | 23 | 270 | 827 | 233 | 736 | 8.88e-13 | 73.2 |
Find 0 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
24279 | gene | 36565 | 44022 | 36565 | ID=MS.gene32689 |
24279 | mRNA | 36565 | 44022 | 36565 | ID=MS.gene32689.t1;Parent=MS.gene32689 |
24279 | exon | 36565 | 36834 | 36565 | ID=MS.gene32689.t1.exon1;Parent=MS.gene32689.t1 |
24279 | CDS | 36565 | 36834 | 36565 | ID=cds.MS.gene32689.t1;Parent=MS.gene32689.t1 |
24279 | exon | 37327 | 37545 | 37327 | ID=MS.gene32689.t1.exon2;Parent=MS.gene32689.t1 |
24279 | CDS | 37327 | 37545 | 37327 | ID=cds.MS.gene32689.t1;Parent=MS.gene32689.t1 |
24279 | exon | 37622 | 37859 | 37622 | ID=MS.gene32689.t1.exon3;Parent=MS.gene32689.t1 |
24279 | CDS | 37622 | 37859 | 37622 | ID=cds.MS.gene32689.t1;Parent=MS.gene32689.t1 |
24279 | exon | 38413 | 38608 | 38413 | ID=MS.gene32689.t1.exon4;Parent=MS.gene32689.t1 |
24279 | CDS | 38413 | 38608 | 38413 | ID=cds.MS.gene32689.t1;Parent=MS.gene32689.t1 |
24279 | exon | 39330 | 39384 | 39330 | ID=MS.gene32689.t1.exon5;Parent=MS.gene32689.t1 |
24279 | CDS | 39330 | 39384 | 39330 | ID=cds.MS.gene32689.t1;Parent=MS.gene32689.t1 |
24279 | exon | 40198 | 40348 | 40198 | ID=MS.gene32689.t1.exon6;Parent=MS.gene32689.t1 |
24279 | CDS | 40198 | 40348 | 40198 | ID=cds.MS.gene32689.t1;Parent=MS.gene32689.t1 |
24279 | exon | 41012 | 41320 | 41012 | ID=MS.gene32689.t1.exon7;Parent=MS.gene32689.t1 |
24279 | CDS | 41012 | 41320 | 41012 | ID=cds.MS.gene32689.t1;Parent=MS.gene32689.t1 |
24279 | exon | 41514 | 41779 | 41514 | ID=MS.gene32689.t1.exon8;Parent=MS.gene32689.t1 |
24279 | CDS | 41514 | 41779 | 41514 | ID=cds.MS.gene32689.t1;Parent=MS.gene32689.t1 |
24279 | exon | 41876 | 42805 | 41876 | ID=MS.gene32689.t1.exon9;Parent=MS.gene32689.t1 |
24279 | CDS | 41876 | 42805 | 41876 | ID=cds.MS.gene32689.t1;Parent=MS.gene32689.t1 |
24279 | exon | 43714 | 44022 | 43714 | ID=MS.gene32689.t1.exon10;Parent=MS.gene32689.t1 |
24279 | CDS | 43714 | 44022 | 43714 | ID=cds.MS.gene32689.t1;Parent=MS.gene32689.t1 |
Gene Sequence |
Protein sequence |