Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene031135.t1 | XP_003618609.1 | 98.3 | 974 | 17 | 0 | 1 | 974 | 1 | 974 | 0.00E+00 | 1752.3 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene031135.t1 | Q9LF37 | 80.8 | 968 | 177 | 4 | 1 | 965 | 1 | 962 | 0.0e+00 | 1449.5 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene031135.t1 | G7KLS1 | 98.3 | 974 | 17 | 0 | 1 | 974 | 1 | 974 | 0.0e+00 | 1752.3 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Gene1 | Gene2 | Type |
---|---|---|
MS.gene69343 | MS.gene031135 | PPI |
MS.gene41623 | MS.gene031135 | PPI |
MS.gene031135 | MS.gene000515 | PPI |
MS.gene031135 | MS.gene044439 | PPI |
MS.gene015097 | MS.gene031135 | PPI |
MS.gene80200 | MS.gene031135 | PPI |
MS.gene013215 | MS.gene031135 | PPI |
MS.gene031135 | MS.gene06260 | PPI |
MS.gene014895 | MS.gene031135 | PPI |
MS.gene013187 | MS.gene031135 | PPI |
MS.gene033069 | MS.gene031135 | PPI |
MS.gene32689 | MS.gene031135 | PPI |
MS.gene52786 | MS.gene031135 | PPI |
MS.gene031135 | MS.gene014362 | PPI |
MS.gene06302 | MS.gene031135 | PPI |
MS.gene064818 | MS.gene031135 | PPI |
MS.gene031135 | MS.gene071279 | PPI |
MS.gene063483 | MS.gene031135 | PPI |
MS.gene014894 | MS.gene031135 | PPI |
MS.gene32894 | MS.gene031135 | PPI |
MS.gene055539 | MS.gene031135 | PPI |
MS.gene030500 | MS.gene031135 | PPI |
MS.gene42656 | MS.gene031135 | PPI |
MS.gene031135 | MS.gene012897 | PPI |
MS.gene049185 | MS.gene031135 | PPI |
MS.gene41649 | MS.gene031135 | PPI |
MS.gene42657 | MS.gene031135 | PPI |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene031135.t1 | MTR_6g013660 | 98.357 | 974 | 16 | 0 | 1 | 974 | 1 | 974 | 0.0 | 1961 |
MS.gene031135.t1 | MTR_7g012820 | 88.662 | 979 | 101 | 4 | 1 | 972 | 1 | 976 | 0.0 | 1757 |
MS.gene031135.t1 | MTR_7g012820 | 92.961 | 895 | 63 | 0 | 78 | 972 | 11 | 905 | 0.0 | 1707 |
MS.gene031135.t1 | MTR_3g106160 | 71.959 | 888 | 247 | 2 | 71 | 957 | 84 | 970 | 0.0 | 1340 |
MS.gene031135.t1 | MTR_4g109450 | 51.505 | 864 | 395 | 8 | 82 | 935 | 4 | 853 | 0.0 | 859 |
MS.gene031135.t1 | MTR_4g109450 | 52.479 | 827 | 367 | 9 | 82 | 897 | 4 | 815 | 0.0 | 828 |
MS.gene031135.t1 | MTR_7g028970 | 49.481 | 867 | 407 | 10 | 82 | 935 | 4 | 852 | 0.0 | 811 |
MS.gene031135.t1 | MTR_8g100040 | 45.814 | 884 | 391 | 16 | 71 | 936 | 89 | 902 | 0.0 | 719 |
MS.gene031135.t1 | MTR_3g102830 | 45.475 | 873 | 391 | 13 | 82 | 936 | 98 | 903 | 0.0 | 710 |
MS.gene031135.t1 | MTR_3g498725 | 45.078 | 894 | 396 | 16 | 82 | 950 | 93 | 916 | 0.0 | 701 |
MS.gene031135.t1 | MTR_3g098310 | 44.061 | 724 | 316 | 13 | 238 | 944 | 297 | 948 | 0.0 | 595 |
MS.gene031135.t1 | MTR_3g098310 | 38.000 | 750 | 356 | 14 | 82 | 785 | 102 | 788 | 2.34e-156 | 481 |
MS.gene031135.t1 | MTR_2g099075 | 41.957 | 460 | 251 | 4 | 477 | 935 | 4 | 448 | 1.43e-107 | 342 |
MS.gene031135.t1 | MTR_3g461000 | 49.221 | 321 | 160 | 1 | 617 | 937 | 432 | 749 | 1.38e-103 | 342 |
MS.gene031135.t1 | MTR_3g461000 | 38.015 | 413 | 240 | 7 | 82 | 481 | 3 | 412 | 5.74e-76 | 266 |
MS.gene031135.t1 | MTR_2g006950 | 42.440 | 377 | 191 | 6 | 539 | 912 | 2 | 355 | 2.45e-87 | 292 |
MS.gene031135.t1 | MTR_2g006950 | 33.482 | 224 | 118 | 6 | 719 | 936 | 350 | 548 | 8.22e-31 | 129 |
MS.gene031135.t1 | MTR_6g048860 | 59.259 | 135 | 54 | 1 | 235 | 369 | 132 | 265 | 4.71e-47 | 172 |
MS.gene031135.t1 | MTR_6g013600 | 85.057 | 87 | 13 | 0 | 864 | 950 | 10 | 96 | 4.97e-44 | 154 |
MS.gene031135.t1 | MTR_1614s0010 | 43.605 | 172 | 86 | 4 | 716 | 886 | 1 | 162 | 5.27e-32 | 124 |
MS.gene031135.t1 | MTR_1g076440 | 60.638 | 94 | 37 | 0 | 701 | 794 | 150 | 243 | 2.41e-31 | 125 |
MS.gene031135.t1 | MTR_5g098360 | 53.684 | 95 | 43 | 1 | 636 | 730 | 74 | 167 | 2.82e-24 | 100 |
MS.gene031135.t1 | MTR_7g096480 | 39.062 | 128 | 45 | 1 | 608 | 735 | 1 | 95 | 3.46e-19 | 88.6 |
MS.gene031135.t1 | MTR_7g096480 | 31.915 | 141 | 68 | 3 | 794 | 934 | 96 | 208 | 6.44e-13 | 70.1 |
MS.gene031135.t1 | MTR_2g029230 | 52.542 | 59 | 28 | 0 | 239 | 297 | 71 | 129 | 1.47e-13 | 68.9 |
MS.gene031135.t1 | MTR_3g029990 | 56.897 | 58 | 25 | 0 | 105 | 162 | 506 | 563 | 2.76e-13 | 74.3 |
MS.gene031135.t1 | MTR_3g029990 | 56.897 | 58 | 25 | 0 | 105 | 162 | 506 | 563 | 3.08e-13 | 74.3 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene031135.t1 | AT5G15450 | 84.335 | 932 | 138 | 3 | 30 | 959 | 31 | 956 | 0.0 | 1622 |
MS.gene031135.t1 | AT2G25140 | 69.188 | 899 | 265 | 5 | 64 | 961 | 72 | 959 | 0.0 | 1289 |
MS.gene031135.t1 | AT1G74310 | 51.220 | 861 | 399 | 7 | 82 | 935 | 4 | 850 | 0.0 | 854 |
MS.gene031135.t1 | AT1G74310 | 51.762 | 823 | 376 | 7 | 82 | 897 | 4 | 812 | 0.0 | 822 |
MS.gene031135.t1 | AT5G50920 | 45.753 | 883 | 391 | 13 | 82 | 943 | 96 | 911 | 0.0 | 725 |
MS.gene031135.t1 | AT3G48870 | 43.676 | 925 | 426 | 15 | 33 | 936 | 40 | 890 | 0.0 | 715 |
MS.gene031135.t1 | AT3G48870 | 43.676 | 925 | 426 | 15 | 33 | 936 | 71 | 921 | 0.0 | 714 |
MS.gene031135.t1 | AT3G48870 | 43.676 | 925 | 426 | 15 | 33 | 936 | 71 | 921 | 0.0 | 714 |
MS.gene031135.t1 | AT3G48870 | 43.676 | 925 | 426 | 15 | 33 | 936 | 71 | 921 | 0.0 | 714 |
MS.gene031135.t1 | AT4G14670 | 52.128 | 564 | 252 | 5 | 176 | 738 | 76 | 622 | 0.0 | 559 |
MS.gene031135.t1 | AT5G51070 | 51.205 | 332 | 147 | 2 | 613 | 933 | 590 | 917 | 1.27e-110 | 364 |
MS.gene031135.t1 | AT5G51070 | 37.422 | 481 | 242 | 8 | 40 | 482 | 59 | 518 | 3.43e-84 | 292 |
MS.gene031135.t1 | AT3G45450 | 32.329 | 365 | 192 | 8 | 82 | 438 | 3 | 320 | 2.60e-45 | 167 |
MS.gene031135.t1 | AT4G30350 | 30.769 | 169 | 105 | 3 | 648 | 814 | 577 | 735 | 5.79e-12 | 70.5 |
MS.gene031135.t1 | AT5G57710 | 27.632 | 152 | 94 | 3 | 683 | 829 | 655 | 795 | 8.34e-11 | 66.6 |
Find 243 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
CAATGTATTCCTTCAAATTT+TGG | 0.107959 | 6.2:-8796168 | MS.gene031135:CDS |
ATCTGACAATGCTACTTATT+TGG | 0.180599 | 6.2:+8795907 | None:intergenic |
TATTCTTAGAGGAGAATTTA+AGG | 0.192967 | 6.2:-8795449 | MS.gene031135:CDS |
ATTCAATTGTGTTAGGTTCT+AGG | 0.196643 | 6.2:-8800703 | MS.gene031135:intron |
TTGTTCTCCTTTGCCACTTC+TGG | 0.230982 | 6.2:+8800937 | None:intergenic |
TCAGCTTATATCTCTTGATA+TGG | 0.240300 | 6.2:-8799214 | MS.gene031135:intron |
AGGGAATTCAAGAAAGAATA+TGG | 0.250468 | 6.2:-8800625 | MS.gene031135:CDS |
TTGTTTCGGTTCCGGGAAAT+TGG | 0.264135 | 6.2:+8803078 | None:intergenic |
TCAGTTGAGCACTTGGTTCT+TGG | 0.281736 | 6.2:-8800589 | MS.gene031135:CDS |
GGTCGATAACACCCGGCTTC+TGG | 0.285352 | 6.2:-8800827 | MS.gene031135:CDS |
AGCAGCCGCTAAACTGAAAA+TGG | 0.289229 | 6.2:-8797716 | MS.gene031135:CDS |
TTGAGCATTGTTTCGGTTCC+GGG | 0.289478 | 6.2:+8803071 | None:intergenic |
ACCGGACAATAAACTGTTTA+GGG | 0.293737 | 6.2:+8802935 | None:intergenic |
AGGGTCAAGTTTCCCTGCTT+TGG | 0.305513 | 6.2:+8800039 | None:intergenic |
ATCCAACTTCTTGGAAGTTT+AGG | 0.306509 | 6.2:-8795547 | MS.gene031135:CDS |
GAGCCTGCTATCCAACTTCT+TGG | 0.307199 | 6.2:-8795556 | MS.gene031135:CDS |
GAATCAGCCGGTTCAATGTT+AGG | 0.308344 | 6.2:-8800679 | MS.gene031135:CDS |
ATCATTCTGTTCCAATTTCC+CGG | 0.310174 | 6.2:-8803089 | MS.gene031135:CDS |
AAGAACAATCCTGTGCTAAT+TGG | 0.318260 | 6.2:-8799959 | MS.gene031135:CDS |
ATTGAGCATTGTTTCGGTTC+CGG | 0.320757 | 6.2:+8803070 | None:intergenic |
CTCTCTCCTAAAAGAGAAAC+AGG | 0.326187 | 6.2:-8797560 | MS.gene031135:CDS |
TTTGCCCAAGATCGACGATT+TGG | 0.327059 | 6.2:-8800565 | MS.gene031135:CDS |
GCCGGATCTTTACCAAGGTT+GGG | 0.331418 | 6.2:-8800849 | MS.gene031135:CDS |
CGCCGGATCTTTACCAAGGT+TGG | 0.333127 | 6.2:-8800850 | MS.gene031135:CDS |
AGGATTGTTCTTTGTTCTCC+TGG | 0.337734 | 6.2:+8799970 | None:intergenic |
GATATGGGTGCACTTATTGC+TGG | 0.342377 | 6.2:-8799198 | MS.gene031135:CDS |
CTGCACTTGATGAGATTAAT+AGG | 0.349445 | 6.2:-8797675 | MS.gene031135:CDS |
CTTGACCTACAACACGCTTA+TGG | 0.349824 | 6.2:+8796531 | None:intergenic |
GAACCGAAACAATGCTCAAT+TGG | 0.350783 | 6.2:-8803067 | MS.gene031135:CDS |
ACCGGCCTAGCACCATAGTT+TGG | 0.353196 | 6.2:+8795517 | None:intergenic |
TTCAATGTTAGGGCGTGATT+TGG | 0.353578 | 6.2:-8800668 | MS.gene031135:CDS |
AAAATACCATTTCAATACTA+AGG | 0.365010 | 6.2:-8798115 | MS.gene031135:CDS |
TTATTGCTGGAGCAAAATAT+CGG | 0.370612 | 6.2:-8799185 | MS.gene031135:CDS |
GATTGTTGAAGTTTAGAAAT+CGG | 0.371471 | 6.2:+8796590 | None:intergenic |
TTCAATTGTGTTAGGTTCTA+GGG | 0.373490 | 6.2:-8800702 | MS.gene031135:intron |
AATCGCTAGCTTCATGTTCA+TGG | 0.375106 | 6.2:-8796438 | MS.gene031135:CDS |
CACCGGACAATAAACTGTTT+AGG | 0.376791 | 6.2:+8802934 | None:intergenic |
CAGCTTATATCTCTTGATAT+GGG | 0.380093 | 6.2:-8799213 | MS.gene031135:CDS |
CTTGCAAAGGGTATTCTTAG+AGG | 0.382346 | 6.2:-8795460 | MS.gene031135:CDS |
TCTTCCCAAATCGTCGATCT+TGG | 0.384015 | 6.2:+8800560 | None:intergenic |
ATGAGATCCATACAGTTGTT+GGG | 0.403955 | 6.2:-8799086 | MS.gene031135:CDS |
TTAGGTTACGATCCAAACTA+TGG | 0.404593 | 6.2:-8795529 | MS.gene031135:CDS |
AACTGACTGGCGTCCCCTTA+CGG | 0.405551 | 6.2:+8800483 | None:intergenic |
GAAGTAACTGGGAATGATAT+TGG | 0.406410 | 6.2:-8796641 | MS.gene031135:CDS |
GACCCAATTGAGCATTGTTT+CGG | 0.407035 | 6.2:+8803064 | None:intergenic |
AAGTAGCATTGTCAGATTGC+AGG | 0.411867 | 6.2:-8795901 | MS.gene031135:intron |
ATTGTTGAAGTTTAGAAATC+GGG | 0.413099 | 6.2:+8796591 | None:intergenic |
AACCTAAACTTCCAAGAAGT+TGG | 0.413866 | 6.2:+8795545 | None:intergenic |
TGGAATCGAATTCAAGGAAG+TGG | 0.416647 | 6.2:+8803008 | None:intergenic |
TGTCGGTAGCCTCCAGAAGC+CGG | 0.420597 | 6.2:+8800815 | None:intergenic |
ATATTCTTTCTTGAATTCCC+TGG | 0.423978 | 6.2:+8800627 | None:intergenic |
TTGCCCAAGATCGACGATTT+GGG | 0.427630 | 6.2:-8800564 | MS.gene031135:CDS |
CATTTCTGACACTGCACTTG+TGG | 0.428197 | 6.2:-8798054 | MS.gene031135:CDS |
ATGTTGAGAGAGGAAGTAAC+TGG | 0.429473 | 6.2:-8796653 | MS.gene031135:CDS |
CTTCAATGGAATCGAATTCA+AGG | 0.429528 | 6.2:+8803002 | None:intergenic |
TGCCATCATCCAAAATTTGA+AGG | 0.432024 | 6.2:+8796159 | None:intergenic |
TACTGTGCGGCCTTGTGAAT+CGG | 0.433455 | 6.2:+8796130 | None:intergenic |
TCATCATCTCTTCCTATGAC+AGG | 0.434902 | 6.2:+8800019 | None:intergenic |
TCAAACAAAATAACTGCATA+AGG | 0.438423 | 6.2:+8796221 | None:intergenic |
ATAAATCACAGCTATTGATC+TGG | 0.439652 | 6.2:-8797746 | MS.gene031135:intron |
AGATTGATCGGTGCTCCTCC+TGG | 0.444968 | 6.2:-8796296 | MS.gene031135:CDS |
TCGGCAACTGCCTTGACAGC+AGG | 0.446193 | 6.2:+8796506 | None:intergenic |
GACCAAGCATAGGCTTTAAG+AGG | 0.449483 | 6.2:+8798255 | None:intergenic |
ATTTGTATCAGTTGAGCACT+TGG | 0.453165 | 6.2:-8800596 | MS.gene031135:CDS |
GCTTTATTAGAACAAAAGAA+TGG | 0.453566 | 6.2:-8800880 | MS.gene031135:CDS |
GAACTCCATAAGCGTGTTGT+AGG | 0.456548 | 6.2:-8796536 | MS.gene031135:CDS |
GGGAAACTTGACCCTGTCAT+AGG | 0.458148 | 6.2:-8800031 | MS.gene031135:CDS |
TGGTGCTAGGCCGGTGAAGC+GGG | 0.458939 | 6.2:-8795509 | MS.gene031135:CDS |
AGGCATTGATTCAGAGAGCC+AGG | 0.459300 | 6.2:-8800645 | MS.gene031135:CDS |
GATGAGATCCATACAGTTGT+TGG | 0.460700 | 6.2:-8799087 | MS.gene031135:CDS |
CTTCCCAAATCGTCGATCTT+GGG | 0.465484 | 6.2:+8800561 | None:intergenic |
ACAGCAAGAATTCACAGAAA+TGG | 0.468515 | 6.2:-8800983 | MS.gene031135:CDS |
AATGTTAGGGCGTGATTTGG+AGG | 0.469613 | 6.2:-8800665 | MS.gene031135:CDS |
AAAATATCGGGGAGAATTTG+AGG | 0.469676 | 6.2:-8799172 | MS.gene031135:CDS |
ATCACGCCCTAACATTGAAC+CGG | 0.470221 | 6.2:+8800672 | None:intergenic |
TTCGATTCATCAAAGCTTGA+GGG | 0.470736 | 6.2:+8799494 | None:intergenic |
GGGAATTCAAGAAAGAATAT+GGG | 0.472098 | 6.2:-8800624 | MS.gene031135:CDS |
CAGACAAGGCTTCTAGAGAT+AGG | 0.477812 | 6.2:-8797606 | MS.gene031135:CDS |
TAGAGGAGAATTTAAGGAAG+AGG | 0.479467 | 6.2:-8795443 | MS.gene031135:CDS |
TACCTGCCCCAACAACTGTA+TGG | 0.479767 | 6.2:+8799079 | None:intergenic |
AAATACCATTTCAATACTAA+GGG | 0.480377 | 6.2:-8798114 | MS.gene031135:CDS |
AACCGAAACAATGCTCAATT+GGG | 0.480526 | 6.2:-8803066 | MS.gene031135:CDS |
TAGTAATTACTACCTTTGTC+AGG | 0.480850 | 6.2:+8797987 | None:intergenic |
TTCATGTTCATGGGCCCCAC+AGG | 0.481808 | 6.2:-8796428 | MS.gene031135:CDS |
CTTTATTAGAACAAAAGAAT+GGG | 0.483021 | 6.2:-8800879 | MS.gene031135:CDS |
GTCGGTAGCCTCCAGAAGCC+GGG | 0.483627 | 6.2:+8800816 | None:intergenic |
TGACACTGCGCCAAAAGATT+CGG | 0.484035 | 6.2:-8796039 | MS.gene031135:CDS |
TATTGCTGGAGCAAAATATC+GGG | 0.485918 | 6.2:-8799184 | MS.gene031135:CDS |
CTCTCAGATCGATACATAAG+TGG | 0.486173 | 6.2:-8798020 | MS.gene031135:CDS |
TTTGTTTGATGAGATTGAAA+AGG | 0.486902 | 6.2:-8796207 | MS.gene031135:CDS |
TTGACAGCAATGGCCAAAGC+AGG | 0.487438 | 6.2:-8800052 | MS.gene031135:CDS |
AGCTAGGGCCTTGGCTAGCT+CGG | 0.487882 | 6.2:+8796394 | None:intergenic |
TGTTGAATCACCCGCTTCAC+CGG | 0.490558 | 6.2:+8795499 | None:intergenic |
AAAAGAATGGGCTTGCTCGC+CGG | 0.490711 | 6.2:-8800867 | MS.gene031135:CDS |
CTTCCAAGAAGTTGGATAGC+AGG | 0.492964 | 6.2:+8795553 | None:intergenic |
TCTTCGTATCCAACGTATCC+AGG | 0.494198 | 6.2:+8796278 | None:intergenic |
TATTGAACATGTAAGAAGCT+AGG | 0.494495 | 6.2:+8796378 | None:intergenic |
ATACAGAAGAAGCACTTGTT+CGG | 0.495433 | 6.2:-8796358 | MS.gene031135:CDS |
AATCAGCCGGTTCAATGTTA+GGG | 0.499797 | 6.2:-8800678 | MS.gene031135:CDS |
ACCCTAAACAGTTTATTGTC+CGG | 0.500047 | 6.2:-8802936 | MS.gene031135:CDS |
ATCCATACAGTTGTTGGGGC+AGG | 0.500826 | 6.2:-8799081 | MS.gene031135:intron |
TTACATGAATATATGAGCTC+TGG | 0.501224 | 6.2:-8796683 | MS.gene031135:CDS |
CTCAGCAAAAGCTAGTGTTT+AGG | 0.501833 | 6.2:-8795369 | MS.gene031135:CDS |
GCGATCCAACGTTCAAGAGC+AGG | 0.502010 | 6.2:-8796482 | MS.gene031135:CDS |
CATGTAAGAAGCTAGGGCCT+TGG | 0.502192 | 6.2:+8796385 | None:intergenic |
AAACTGCTATAGAGTCCGTA+AGG | 0.502909 | 6.2:-8800498 | MS.gene031135:CDS |
CCTGTGCTAATTGGTGAGCC+TGG | 0.504014 | 6.2:-8799950 | MS.gene031135:CDS |
CGCCAGTCAGTTATTGATCA+AGG | 0.505510 | 6.2:-8800472 | MS.gene031135:intron |
TTGGCGCTGAATGTGCTTGT+CGG | 0.506074 | 6.2:+8800798 | None:intergenic |
GGATAGCAGGCTCTGTTACT+CGG | 0.511653 | 6.2:+8795566 | None:intergenic |
AGCAAAAGCTAGTGTTTAGG+AGG | 0.511723 | 6.2:-8795366 | MS.gene031135:CDS |
CCCCAACCTTGGTAAAGATC+CGG | 0.511924 | 6.2:+8800848 | None:intergenic |
AATCTACTGCTAAAGACAGC+AGG | 0.516797 | 6.2:-8795327 | MS.gene031135:CDS |
TCAACTCTATTCATGAACTC+GGG | 0.517096 | 6.2:+8795963 | None:intergenic |
CCGGATCTTTACCAAGGTTG+GGG | 0.517462 | 6.2:-8800848 | MS.gene031135:CDS |
AAATTTCTTCATAGAATCTG+TGG | 0.517735 | 6.2:+8795295 | None:intergenic |
TTTGGTCACGGTCAAGAGGC+CGG | 0.518482 | 6.2:+8795925 | None:intergenic |
GGAAGGAAAATACGAAGCCT+TGG | 0.522383 | 6.2:-8800092 | MS.gene031135:CDS |
TTCTTTGCAACGACAACTCG+AGG | 0.523246 | 6.2:-8796720 | MS.gene031135:CDS |
ATTAATCTCATCAAGTGCAG+TGG | 0.527920 | 6.2:+8797678 | None:intergenic |
GAAAGATATGAGTTGCATCA+TGG | 0.527924 | 6.2:-8798083 | MS.gene031135:CDS |
CCAGTTAAATCACCTTTGGT+TGG | 0.528840 | 6.2:+8800779 | None:intergenic |
ATCGCTAGCTTCATGTTCAT+GGG | 0.529259 | 6.2:-8796437 | MS.gene031135:CDS |
ATTGAACATGTAAGAAGCTA+GGG | 0.529996 | 6.2:+8796379 | None:intergenic |
TCCAAACTATGGTGCTAGGC+CGG | 0.532503 | 6.2:-8795518 | MS.gene031135:CDS |
GGAAAGACTGCAATTTCTGA+AGG | 0.533425 | 6.2:-8799923 | MS.gene031135:CDS |
AAACATGAAGCAGCGTGTAA+TGG | 0.536079 | 6.2:-8796009 | MS.gene031135:CDS |
ATCAACTCTATTCATGAACT+CGG | 0.536791 | 6.2:+8795962 | None:intergenic |
GATTGATATGAGTGAGTACA+TGG | 0.539698 | 6.2:-8796336 | MS.gene031135:CDS |
CTAATGCTAGGTGCTACAAA+TGG | 0.540215 | 6.2:-8798296 | MS.gene031135:intron |
GTGGAAAATGAACTTGCAAA+GGG | 0.543223 | 6.2:-8795472 | MS.gene031135:CDS |
AACCTCTTAAAGCCTATGCT+TGG | 0.545352 | 6.2:-8798257 | MS.gene031135:CDS |
TGTGGAAAATGAACTTGCAA+AGG | 0.545576 | 6.2:-8795473 | MS.gene031135:CDS |
GTACTGTGATCCCACATTTG+AGG | 0.546821 | 6.2:+8796079 | None:intergenic |
TCGGTCTTACCTACACCTGT+GGG | 0.549146 | 6.2:+8796413 | None:intergenic |
GACCTTGATCAATAACTGAC+TGG | 0.549183 | 6.2:+8800470 | None:intergenic |
CTCAAGCTTTGATGAATCGA+AGG | 0.550839 | 6.2:-8799492 | MS.gene031135:CDS |
AGGTGCTACAAATGGTGCTA+TGG | 0.550878 | 6.2:-8798288 | MS.gene031135:CDS |
CGAGGGGAACTGCGATGCAT+TGG | 0.551375 | 6.2:-8798233 | MS.gene031135:CDS |
ATGGTGCTAGGCCGGTGAAG+CGG | 0.551428 | 6.2:-8795510 | MS.gene031135:CDS |
GGAGAACAAGCATCAGATTG+TGG | 0.552280 | 6.2:-8800923 | MS.gene031135:CDS |
TTGCTGAGGACGTTGACCGT+TGG | 0.554609 | 6.2:+8795384 | None:intergenic |
CATACGGTTTCAAGATTGAT+CGG | 0.554611 | 6.2:-8796308 | MS.gene031135:CDS |
GATTGTGTCATCACCAGAAG+TGG | 0.555102 | 6.2:-8800950 | MS.gene031135:CDS |
ACAAATGGTGCTATGGATGC+TGG | 0.556016 | 6.2:-8798281 | MS.gene031135:CDS |
TGCTGTCAAGGCAGTTGCCG+AGG | 0.556105 | 6.2:-8796504 | MS.gene031135:CDS |
CAACAACATTAGATGAGTAT+CGG | 0.557426 | 6.2:-8798208 | MS.gene031135:CDS |
ACAACTCGAGGGTGCAGAGA+AGG | 0.559810 | 6.2:-8796708 | MS.gene031135:CDS |
GGTGCATTCAAATTCTCTCC+AGG | 0.560236 | 6.2:-8799988 | MS.gene031135:CDS |
CGTGCTGCTGAATTAAAGTA+CGG | 0.561695 | 6.2:-8796752 | MS.gene031135:CDS |
CATCATCATGACCTCAAATG+TGG | 0.561967 | 6.2:-8796090 | MS.gene031135:CDS |
TTGGCTCAGAGAATTGTTCA+AGG | 0.562222 | 6.2:-8799523 | MS.gene031135:CDS |
ATGAACATGAAGCTAGCGAT+TGG | 0.563501 | 6.2:+8796440 | None:intergenic |
ATAGACCTGCTCTTGAACGT+TGG | 0.564029 | 6.2:+8796477 | None:intergenic |
CTTCGATTCATCAAAGCTTG+AGG | 0.564569 | 6.2:+8799493 | None:intergenic |
TGAAAACGACGTTCTAGTGC+AGG | 0.564933 | 6.2:+8798167 | None:intergenic |
GCTCGGCCTGTAGAATCTCA+AGG | 0.565106 | 6.2:+8796792 | None:intergenic |
AGGTCAAGATCCTGCTGTCA+AGG | 0.566975 | 6.2:-8796516 | MS.gene031135:CDS |
TGGAAAGGATTTGACAGCAA+TGG | 0.568299 | 6.2:-8800062 | MS.gene031135:CDS |
CATCATCTCTTCCTATGACA+GGG | 0.569503 | 6.2:+8800020 | None:intergenic |
TAAAGCCTATGCTTGGTCGA+GGG | 0.571569 | 6.2:-8798250 | MS.gene031135:CDS |
CAATGCTACTTATTTGGTCA+CGG | 0.572092 | 6.2:+8795913 | None:intergenic |
ACGTTCAAGAGCAGGTCTAT+CGG | 0.572360 | 6.2:-8796474 | MS.gene031135:CDS |
GGTGTTATCGACCCCAACCT+TGG | 0.572863 | 6.2:+8800837 | None:intergenic |
CTAATTGGTGAGCCTGGTGT+TGG | 0.573213 | 6.2:-8799944 | MS.gene031135:CDS |
TTAAAGCCTATGCTTGGTCG+AGG | 0.576320 | 6.2:-8798251 | MS.gene031135:CDS |
TGCTCGCCGGATCTTTACCA+AGG | 0.576384 | 6.2:-8800854 | MS.gene031135:CDS |
GGAATCGAATTCAAGGAAGT+GGG | 0.576591 | 6.2:+8803009 | None:intergenic |
GGAAGTGGGTTTCAATTGAG+AGG | 0.577142 | 6.2:+8803023 | None:intergenic |
CTCGGTCTTACCTACACCTG+TGG | 0.579164 | 6.2:+8796412 | None:intergenic |
AACTGCTATAGAGTCCGTAA+GGG | 0.580372 | 6.2:-8800497 | MS.gene031135:CDS |
ACGATCCAAACTATGGTGCT+AGG | 0.581916 | 6.2:-8795522 | MS.gene031135:CDS |
GCGGGTGATTCAACAAAATG+TGG | 0.583343 | 6.2:-8795491 | MS.gene031135:CDS |
AGTAAACCTTGAGATTCTAC+AGG | 0.586632 | 6.2:-8796798 | MS.gene031135:CDS |
TCAATTGTGTTAGGTTCTAG+GGG | 0.587787 | 6.2:-8800701 | MS.gene031135:intron |
TTAATCTCATCAAGTGCAGT+GGG | 0.587974 | 6.2:+8797679 | None:intergenic |
CTTATTTGGTCACGGTCAAG+AGG | 0.589190 | 6.2:+8795921 | None:intergenic |
AAAGCCTATGCTTGGTCGAG+GGG | 0.589635 | 6.2:-8798249 | MS.gene031135:CDS |
ATCATCATGACCTCAAATGT+GGG | 0.591622 | 6.2:-8796089 | MS.gene031135:CDS |
TGAGTACATGGAAAAGCATA+CGG | 0.592004 | 6.2:-8796324 | MS.gene031135:CDS |
TGAGATCCATACAGTTGTTG+GGG | 0.593092 | 6.2:-8799085 | MS.gene031135:CDS |
TTCATGGGCCCCACAGGTGT+AGG | 0.593552 | 6.2:-8796422 | MS.gene031135:CDS |
ATTGCAGTCTTTCCAACACC+AGG | 0.594268 | 6.2:+8799932 | None:intergenic |
TCTTCAGTCAATCAAAGAAG+AGG | 0.594648 | 6.2:-8797491 | MS.gene031135:intron |
ATCTACTGCTAAAGACAGCA+GGG | 0.595696 | 6.2:-8795326 | MS.gene031135:CDS |
GAGGTAAAAGAAGCTTGAAA+CGG | 0.596274 | 6.2:+8803042 | None:intergenic |
TGAGATTGAAAAGGCACACT+CGG | 0.597217 | 6.2:-8796198 | MS.gene031135:CDS |
GTCATCACCAGAAGTGGCAA+AGG | 0.598891 | 6.2:-8800944 | MS.gene031135:CDS |
ATCGGGGAGAATTTGAGGAT+AGG | 0.599010 | 6.2:-8799167 | MS.gene031135:CDS |
TCTCAGATCGATACATAAGT+GGG | 0.601472 | 6.2:-8798019 | MS.gene031135:CDS |
CGATAACACCCGGCTTCTGG+AGG | 0.602040 | 6.2:-8800824 | MS.gene031135:CDS |
TAACTGCATAAGGTCTTCGA+CGG | 0.602587 | 6.2:+8796231 | None:intergenic |
AAAGAAGTTACAGAATCTGA+TGG | 0.602939 | 6.2:-8799129 | MS.gene031135:CDS |
AGTTCCCCTCGACCAAGCAT+AGG | 0.605658 | 6.2:+8798245 | None:intergenic |
GTGTGCAGATTCAAGTGGAA+AGG | 0.609473 | 6.2:-8802914 | MS.gene031135:intron |
GGAATTCAAGAAAGAATATG+GGG | 0.610872 | 6.2:-8800623 | MS.gene031135:CDS |
TTGGTGAAATTGTGAGCAAG+TGG | 0.613618 | 6.2:-8796622 | MS.gene031135:CDS |
GAAAGACTGCAATTTCTGAA+GGG | 0.614385 | 6.2:-8799922 | MS.gene031135:intron |
GGTGCTCCTCCTGGATACGT+TGG | 0.618766 | 6.2:-8796287 | MS.gene031135:CDS |
CCAGGCTCACCAATTAGCAC+AGG | 0.619879 | 6.2:+8799950 | None:intergenic |
ATTTAGATCATACTCTCGCT+CGG | 0.622435 | 6.2:+8796775 | None:intergenic |
GAAATTGTGAGCAAGTGGAC+TGG | 0.626295 | 6.2:-8796617 | MS.gene031135:CDS |
CAACTCTATTCATGAACTCG+GGG | 0.628408 | 6.2:+8795964 | None:intergenic |
TGACAGCAATGGCCAAAGCA+GGG | 0.628981 | 6.2:-8800051 | MS.gene031135:CDS |
CTCTCCTAAAAGAGAAACAG+GGG | 0.632875 | 6.2:-8797558 | MS.gene031135:CDS |
GCACATTCAGCGCCAACCAA+AGG | 0.633668 | 6.2:-8800791 | MS.gene031135:intron |
TCTTGAACGTTGGATCGCCT+CGG | 0.634179 | 6.2:+8796487 | None:intergenic |
TAGGTTCTAGGGGAATCAGC+CGG | 0.634482 | 6.2:-8800691 | MS.gene031135:CDS |
TGGTAAGTCTATGTTGAGAG+AGG | 0.634759 | 6.2:-8796663 | MS.gene031135:CDS |
TTCCACTTGAATCTGCACAC+CGG | 0.635537 | 6.2:+8802917 | None:intergenic |
GGATACGTTGGATACGAAGA+GGG | 0.636021 | 6.2:-8796275 | MS.gene031135:CDS |
GAGAGAGCTCTGTCTCAAGA+CGG | 0.636630 | 6.2:+8797578 | None:intergenic |
GCAAAAGCTAGTGTTTAGGA+GGG | 0.637686 | 6.2:-8795365 | MS.gene031135:CDS |
AATACCATTTCAATACTAAG+GGG | 0.641086 | 6.2:-8798113 | MS.gene031135:CDS |
GGCATTGATTCAGAGAGCCA+GGG | 0.643747 | 6.2:-8800644 | MS.gene031135:CDS |
AAGAATTCACAGAAATGGCG+TGG | 0.643969 | 6.2:-8800978 | MS.gene031135:CDS |
TCAAGCTTTGATGAATCGAA+GGG | 0.646292 | 6.2:-8799491 | MS.gene031135:intron |
GTATCGGAAGTATATTGAGA+AGG | 0.647452 | 6.2:-8798192 | MS.gene031135:CDS |
TACGTTGGATACGAAGAGGG+AGG | 0.648957 | 6.2:-8796272 | MS.gene031135:CDS |
ACGTTGGATACGAAGAGGGA+GGG | 0.649164 | 6.2:-8796271 | MS.gene031135:CDS |
CGAAGAGGGAGGGCAACTAA+CGG | 0.649419 | 6.2:-8796261 | MS.gene031135:CDS |
TCTTTGCAACGACAACTCGA+GGG | 0.654780 | 6.2:-8796719 | MS.gene031135:CDS |
GTCCGGTGTGCAGATTCAAG+TGG | 0.655835 | 6.2:-8802919 | MS.gene031135:CDS |
TCTCTCCTAAAAGAGAAACA+GGG | 0.655945 | 6.2:-8797559 | MS.gene031135:CDS |
AGGTTGGGGTCGATAACACC+CGG | 0.656725 | 6.2:-8800834 | MS.gene031135:CDS |
TGGATACGTTGGATACGAAG+AGG | 0.657134 | 6.2:-8796276 | MS.gene031135:CDS |
AAATTTGTTATAGATCCGGA+AGG | 0.660325 | 6.2:-8800109 | MS.gene031135:intron |
TGTTGAGAGAGGAAGTAACT+GGG | 0.662343 | 6.2:-8796652 | MS.gene031135:CDS |
AAGCTAGCGATTGGACGATG+AGG | 0.662558 | 6.2:+8796449 | None:intergenic |
GGTCATGATGATGACAGTGT+TGG | 0.668891 | 6.2:+8796100 | None:intergenic |
AGGTAAGACCGAGCTAGCCA+AGG | 0.671019 | 6.2:-8796402 | MS.gene031135:CDS |
ATACCATTTCAATACTAAGG+GGG | 0.671207 | 6.2:-8798112 | MS.gene031135:CDS |
ACTGCTATAGAGTCCGTAAG+GGG | 0.673098 | 6.2:-8800496 | MS.gene031135:CDS |
GGCAGAGTAACCGATTCACA+AGG | 0.679052 | 6.2:-8796140 | MS.gene031135:CDS |
GAAGAGATGATGAAATACGC+AGG | 0.680478 | 6.2:-8800009 | MS.gene031135:CDS |
TCTCATGAATGATACAGACA+AGG | 0.687020 | 6.2:-8797620 | MS.gene031135:CDS |
GAAGTCACAGTACTTGCCAA+CGG | 0.688167 | 6.2:-8795400 | MS.gene031135:CDS |
CGGTCTTACCTACACCTGTG+GGG | 0.688632 | 6.2:+8796414 | None:intergenic |
ATCACAGTACATTCTCAACA+CGG | 0.695499 | 6.2:-8796066 | MS.gene031135:CDS |
ATTGCTGGAGCAAAATATCG+GGG | 0.716683 | 6.2:-8799183 | MS.gene031135:CDS |
TCTCCTAAAAGAGAAACAGG+GGG | 0.723417 | 6.2:-8797557 | MS.gene031135:CDS |
TGTTGGTAAAACTTACTGTG+CGG | 0.738743 | 6.2:+8796117 | None:intergenic |
TCGTATCCAACGTATCCAGG+AGG | 0.739882 | 6.2:+8796281 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr6.2 | gene | 8795303 | 8803148 | 8795303 | ID=MS.gene031135 |
chr6.2 | mRNA | 8795303 | 8803148 | 8795303 | ID=MS.gene031135.t1;Parent=MS.gene031135 |
chr6.2 | exon | 8802915 | 8803148 | 8802915 | ID=MS.gene031135.t1.exon1;Parent=MS.gene031135.t1 |
chr6.2 | CDS | 8802915 | 8803148 | 8802915 | ID=cds.MS.gene031135.t1;Parent=MS.gene031135.t1 |
chr6.2 | exon | 8800792 | 8801010 | 8800792 | ID=MS.gene031135.t1.exon2;Parent=MS.gene031135.t1 |
chr6.2 | CDS | 8800792 | 8801010 | 8800792 | ID=cds.MS.gene031135.t1;Parent=MS.gene031135.t1 |
chr6.2 | exon | 8800473 | 8800710 | 8800473 | ID=MS.gene031135.t1.exon3;Parent=MS.gene031135.t1 |
chr6.2 | CDS | 8800473 | 8800710 | 8800473 | ID=cds.MS.gene031135.t1;Parent=MS.gene031135.t1 |
chr6.2 | exon | 8799923 | 8800118 | 8799923 | ID=MS.gene031135.t1.exon4;Parent=MS.gene031135.t1 |
chr6.2 | CDS | 8799923 | 8800118 | 8799923 | ID=cds.MS.gene031135.t1;Parent=MS.gene031135.t1 |
chr6.2 | exon | 8799492 | 8799546 | 8799492 | ID=MS.gene031135.t1.exon5;Parent=MS.gene031135.t1 |
chr6.2 | CDS | 8799492 | 8799546 | 8799492 | ID=cds.MS.gene031135.t1;Parent=MS.gene031135.t1 |
chr6.2 | exon | 8799082 | 8799232 | 8799082 | ID=MS.gene031135.t1.exon6;Parent=MS.gene031135.t1 |
chr6.2 | CDS | 8799082 | 8799232 | 8799082 | ID=cds.MS.gene031135.t1;Parent=MS.gene031135.t1 |
chr6.2 | exon | 8798000 | 8798308 | 8798000 | ID=MS.gene031135.t1.exon7;Parent=MS.gene031135.t1 |
chr6.2 | CDS | 8798000 | 8798308 | 8798000 | ID=cds.MS.gene031135.t1;Parent=MS.gene031135.t1 |
chr6.2 | exon | 8797492 | 8797757 | 8797492 | ID=MS.gene031135.t1.exon8;Parent=MS.gene031135.t1 |
chr6.2 | CDS | 8797492 | 8797757 | 8797492 | ID=cds.MS.gene031135.t1;Parent=MS.gene031135.t1 |
chr6.2 | exon | 8795902 | 8796828 | 8795902 | ID=MS.gene031135.t1.exon9;Parent=MS.gene031135.t1 |
chr6.2 | CDS | 8795902 | 8796828 | 8795902 | ID=cds.MS.gene031135.t1;Parent=MS.gene031135.t1 |
chr6.2 | exon | 8795303 | 8795632 | 8795303 | ID=MS.gene031135.t1.exon10;Parent=MS.gene031135.t1 |
chr6.2 | CDS | 8795303 | 8795632 | 8795303 | ID=cds.MS.gene031135.t1;Parent=MS.gene031135.t1 |
Gene Sequence |
Protein sequence |