AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene41623

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene41623.t1 MTR_3g098310 96.489 826 17 1 1 814 133 958 0.0 1640
MS.gene41623.t1 MTR_3g098310 96.494 656 11 1 1 644 133 788 0.0 1301
MS.gene41623.t1 MTR_3g498725 50.197 761 351 11 56 809 168 907 0.0 722
MS.gene41623.t1 MTR_3g102830 48.883 761 361 9 56 809 173 912 0.0 708
MS.gene41623.t1 MTR_8g100040 49.014 761 360 9 56 809 172 911 0.0 707
MS.gene41623.t1 MTR_7g012820 43.215 759 344 12 123 813 212 951 0.0 600
MS.gene41623.t1 MTR_7g012820 43.215 759 344 12 123 813 141 880 0.0 600
MS.gene41623.t1 MTR_6g013660 41.337 808 375 13 65 804 168 944 0.0 598
MS.gene41623.t1 MTR_3g106160 42.916 727 339 11 138 800 235 949 0.0 571
MS.gene41623.t1 MTR_4g109450 42.744 758 343 15 113 806 130 860 0.0 564
MS.gene41623.t1 MTR_4g109450 43.058 713 315 15 113 761 130 815 2.81e-177 532
MS.gene41623.t1 MTR_7g028970 40.000 825 392 18 49 807 73 860 1.61e-175 529
MS.gene41623.t1 MTR_3g461000 47.801 341 167 4 472 810 428 759 2.49e-104 340
MS.gene41623.t1 MTR_3g461000 36.220 381 230 3 47 427 72 439 1.18e-70 249
MS.gene41623.t1 MTR_2g099075 39.837 369 203 4 440 807 106 456 3.32e-81 269
MS.gene41623.t1 MTR_2g006950 39.701 335 175 5 440 772 42 351 6.89e-70 242
MS.gene41623.t1 MTR_2g006950 34.483 203 105 4 606 807 380 555 1.21e-29 125
MS.gene41623.t1 MTR_6g048860 48.252 143 73 1 134 276 117 258 5.02e-34 134
MS.gene41623.t1 MTR_1614s0010 40.284 211 108 4 575 783 1 195 5.69e-30 117
MS.gene41623.t1 MTR_1g076440 46.429 140 64 2 557 696 147 275 1.26e-29 120
MS.gene41623.t1 MTR_5g098360 37.069 116 66 2 480 589 53 167 3.26e-16 77.4
MS.gene41623.t1 MTR_7g096480 31.818 154 72 3 653 806 96 216 5.49e-16 79.0
MS.gene41623.t1 MTR_7g096480 34.146 123 48 2 472 594 6 95 8.17e-14 72.4
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene41623.t1 AT5G51070 65.191 836 271 8 1 821 112 942 0.0 1080
MS.gene41623.t1 AT5G50920 48.777 777 337 11 56 809 171 909 0.0 714
MS.gene41623.t1 AT3G48870 49.017 763 357 10 56 809 160 899 0.0 709
MS.gene41623.t1 AT3G48870 49.017 763 357 10 56 809 191 930 0.0 708
MS.gene41623.t1 AT3G48870 49.017 763 357 10 56 809 191 930 0.0 708
MS.gene41623.t1 AT3G48870 49.017 763 357 10 56 809 191 930 0.0 708
MS.gene41623.t1 AT5G15450 41.418 804 373 12 65 803 166 936 0.0 603
MS.gene41623.t1 AT2G25140 43.681 728 334 11 150 812 238 954 0.0 583
MS.gene41623.t1 AT1G74310 43.239 710 324 13 152 801 162 852 0.0 554
MS.gene41623.t1 AT1G74310 43.582 670 299 13 152 761 162 812 8.66e-175 525
MS.gene41623.t1 AT4G14670 36.943 628 297 13 58 597 6 622 9.27e-109 347
MS.gene41623.t1 AT3G45450 30.675 326 168 10 58 346 5 309 1.17e-30 124

Find 186 sgRNAs with CRISPR-Local

Find 394 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CAAATGAACTGCAGCCTTTA+TGG 0.098364 3.4:+88232029 None:intergenic
TCTTTGGCTGCATGCTATTT+TGG 0.134909 3.4:-88231284 MS.gene41623:CDS
TAACATTCTTCTTCAATTAA+TGG 0.179501 3.4:-88230907 MS.gene41623:CDS
GCAGCAGCAAATCAAATATT+TGG 0.183562 3.4:+88230093 None:intergenic
TCAAACAAAACCACAGTAAA+TGG 0.209228 3.4:+88230960 None:intergenic
ACTTGGAAGGGGTCAGTTTC+AGG 0.235139 3.4:-88233481 MS.gene41623:intron
CTAAAAGCCCGGATGATTAT+TGG 0.258261 3.4:-88231882 MS.gene41623:CDS
GACAACCGGGAGGGGAAATA+AGG 0.261671 3.4:-88233541 MS.gene41623:CDS
GTTCAGGATCAACAAAATTA+TGG 0.267481 3.4:+88235694 None:intergenic
GTTCTGCTAGAATTCTTTAT+AGG 0.277808 3.4:-88235635 MS.gene41623:intron
CATTCAGTGAGCAAGTTATT+AGG 0.278138 3.4:-88231047 MS.gene41623:CDS
TGTTCAGTCCACGCTTAAAA+TGG 0.298769 3.4:-88231845 MS.gene41623:intron
AGAAGAATGTTAAATATATC+TGG 0.315702 3.4:+88230918 None:intergenic
CCAGCTTCACCCAGAAGAAT+TGG 0.326428 3.4:+88234031 None:intergenic
ACTAACTACGTTGATGATAA+TGG 0.326862 3.4:-88235807 MS.gene41623:CDS
TCAACTTCTCGGCCAATAAC+TGG 0.328094 3.4:+88234100 None:intergenic
GGGCTGATTGATCCAGTTAT+TGG 0.329565 3.4:-88234112 MS.gene41623:CDS
TTCTTTGAACTTCAACTTCT+CGG 0.329689 3.4:+88234089 None:intergenic
GTTAGACATGAGTGAATATA+TGG 0.330047 3.4:-88231075 MS.gene41623:CDS
TGACACTGTCTTCATTGATT+TGG 0.332043 3.4:-88229889 MS.gene41623:CDS
GCCACAGCTGCCAACTGATC+TGG 0.335594 3.4:+88234408 None:intergenic
CACGGCGGTTTCAACCTGTT+TGG 0.339833 3.4:-88232511 MS.gene41623:CDS
CTTGGATGTAGGACTATTAA+TGG 0.344112 3.4:-88233776 MS.gene41623:CDS
TGATGCAATTAAGATACTTA+TGG 0.355715 3.4:-88232103 MS.gene41623:CDS
GAGATCTCGAGTCGGCCTTC+GGG 0.356437 3.4:-88231378 MS.gene41623:CDS
CTTAAATATTATGGTGCATC+TGG 0.366184 3.4:-88231730 MS.gene41623:CDS
TCAGCAGTGAGCTGCTGAAC+TGG 0.366254 3.4:+88231494 None:intergenic
GACTGGCAATTCTTATTTCT+CGG 0.376702 3.4:-88233982 MS.gene41623:CDS
GAGAGCATGCTTAAATATTA+TGG 0.380084 3.4:-88231739 MS.gene41623:CDS
GACAAACCAACATCATATAA+TGG 0.386817 3.4:-88230518 MS.gene41623:CDS
CTCACTGCCCGTGCAAGTGT+TGG 0.393374 3.4:-88234133 MS.gene41623:CDS
ATGAGGTCAATAGCTTTATC+AGG 0.395259 3.4:+88231976 None:intergenic
TTACTATTCTGTGGCCCAAC+TGG 0.398909 3.4:-88231332 MS.gene41623:CDS
TTCAGGAAACGGACATGATA+AGG 0.400120 3.4:-88231097 MS.gene41623:intron
TTCGTCCAGAGCTGCTCAAC+AGG 0.405721 3.4:-88230457 MS.gene41623:CDS
CCAATTCTTCTGGGTGAAGC+TGG 0.408826 3.4:-88234031 MS.gene41623:CDS
CTTCTTCAATTAATGGAAGA+TGG 0.413133 3.4:-88230900 MS.gene41623:CDS
CTTGTTCAATCAGGGACAAC+CGG 0.414239 3.4:-88233555 MS.gene41623:CDS
GTTCACACACTTGTTCAATC+AGG 0.415130 3.4:-88233564 MS.gene41623:CDS
TCTATCCTGTTGAGCAGCTC+TGG 0.427527 3.4:+88230452 None:intergenic
AAACTAAGGGAACGTGTGAT+TGG 0.431441 3.4:-88231440 MS.gene41623:CDS
AACTGAACTAGCAAAGTCTT+TGG 0.432809 3.4:-88231300 MS.gene41623:CDS
TGGCCATCTTACCGATTCTC+AGG 0.433088 3.4:-88230880 MS.gene41623:intron
ATTTCTCTCCAATAATCATC+CGG 0.433200 3.4:+88231874 None:intergenic
AGAGATCTCGAGTCGGCCTT+CGG 0.433232 3.4:-88231379 MS.gene41623:CDS
TTCTGGGTGAAGCTGGAGTT+GGG 0.435845 3.4:-88234024 MS.gene41623:CDS
GATGCAATTAAGATACTTAT+GGG 0.437666 3.4:-88232102 MS.gene41623:CDS
CTTCTGGGTGAAGCTGGAGT+TGG 0.438875 3.4:-88234025 MS.gene41623:CDS
CAGCAAGATACATAGTTGAT+AGG 0.439208 3.4:-88232005 MS.gene41623:CDS
AGTCAAGGACCTTGTCTGTA+AGG 0.440929 3.4:-88230018 MS.gene41623:CDS
CTCGGCTCATCAATCCAAAC+AGG 0.446079 3.4:+88232497 None:intergenic
TGCTGCTGCAAGACGTGAAA+AGG 0.453555 3.4:-88230079 MS.gene41623:CDS
TCACTGCCCGTGCAAGTGTT+GGG 0.455417 3.4:-88234132 MS.gene41623:CDS
AAGAAGTCTTCTGTTAGATC+TGG 0.455467 3.4:-88231468 MS.gene41623:CDS
AGCCAGGTTATGTGTCCAAT+GGG 0.456669 3.4:-88234344 MS.gene41623:CDS
TTCTGTGGCCCAACTGGCGT+TGG 0.456768 3.4:-88231326 MS.gene41623:CDS
GCAAGCAATGCTTCAGCCAA+TGG 0.458378 3.4:+88229930 None:intergenic
GGGGTCTAGTGCCATTGCTA+AGG 0.463476 3.4:-88230576 MS.gene41623:CDS
AAAAGCAATCCAATTCTTCT+GGG 0.464852 3.4:-88234040 MS.gene41623:CDS
ACAGAATAGTAAAGTTGCTA+TGG 0.465089 3.4:+88231343 None:intergenic
ACAGTTGCTTCCCTCTGGTC+AGG 0.465119 3.4:-88231521 MS.gene41623:CDS
CACCTCAAAATCAATTCCTC+GGG 0.465538 3.4:+88230049 None:intergenic
TTCAATCCATTATATGATGT+TGG 0.467114 3.4:+88230512 None:intergenic
ATAAAAGATATAATAGAGTC+AGG 0.467220 3.4:-88233706 MS.gene41623:intron
GCTAGAGATGGTAGAGAGCC+AGG 0.468940 3.4:-88234360 MS.gene41623:CDS
TAGATCTGGATAATAAACTA+AGG 0.469027 3.4:-88231454 MS.gene41623:CDS
GACAAAACGTGTCATGTCCT+TGG 0.472119 3.4:-88233794 MS.gene41623:CDS
GATGTAGGACTATTAATGGC+TGG 0.472478 3.4:-88233772 MS.gene41623:CDS
TAAAGTTGCTATGGGTCTAC+CGG 0.474304 3.4:+88231352 None:intergenic
CCCAGATCAGTTGGCAGCTG+TGG 0.474446 3.4:-88234409 MS.gene41623:CDS
TGCTTAAACCTTCACTTGGA+AGG 0.478401 3.4:-88233494 MS.gene41623:CDS
CAATCAGGGACAACCGGGAG+GGG 0.479272 3.4:-88233549 MS.gene41623:CDS
CTAATAACTTGCTCACTGAA+TGG 0.479808 3.4:+88231048 None:intergenic
GGGAGGGGAAATAAGGGTTC+TGG 0.480130 3.4:-88233534 MS.gene41623:CDS
CTACCACTATTGATGAATAC+AGG 0.481152 3.4:-88232562 MS.gene41623:CDS
GCAACTGTTGCTATATGATC+AGG 0.483203 3.4:+88231536 None:intergenic
ACAACCGGGAGGGGAAATAA+GGG 0.483340 3.4:-88233540 MS.gene41623:CDS
GTTATGTTGGTTATGGAGAA+GGG 0.484795 3.4:-88231013 MS.gene41623:CDS
TCTGTGGCCCAACTGGCGTT+GGG 0.486174 3.4:-88231325 MS.gene41623:CDS
ACTGGCAATTCTTATTTCTC+GGG 0.487942 3.4:-88233981 MS.gene41623:CDS
CAAGCAATGCTTCAGCCAAT+GGG 0.488172 3.4:+88229931 None:intergenic
TCTCTTCACAGATCTAGAAA+TGG 0.490279 3.4:+88231397 None:intergenic
GAGACAAATCGTTCTCAAAA+CGG 0.492726 3.4:-88235897 MS.gene41623:CDS
TCTATATCACAAAGGCGCTC+TGG 0.493642 3.4:-88234309 MS.gene41623:intron
AGAACCCTTATTTCCCCTCC+CGG 0.496013 3.4:+88233536 None:intergenic
GATAGACACACCAATAGAAA+AGG 0.496212 3.4:+88233947 None:intergenic
TATAACAAGGGTGTTACCAT+TGG 0.496267 3.4:+88229863 None:intergenic
GCTTAAACCTTCACTTGGAA+GGG 0.497310 3.4:-88233493 MS.gene41623:CDS
ATATACAGAAGATGCCATAA+AGG 0.500415 3.4:-88232043 MS.gene41623:CDS
TCTCCATAACCAACATAACC+TGG 0.501731 3.4:+88231017 None:intergenic
GAGGTCTAGCACCATATGTT+GGG 0.502338 3.4:+88229985 None:intergenic
CCACAGCTGCCAACTGATCT+GGG 0.502623 3.4:+88234409 None:intergenic
TAGCAACAGTTGCTTCCCTC+TGG 0.507727 3.4:-88231526 MS.gene41623:CDS
GTACCAAAAGAAAACGGAAC+AGG 0.507840 3.4:+88235762 None:intergenic
ATGTAGGACTATTAATGGCT+GGG 0.511098 3.4:-88233771 MS.gene41623:CDS
AAACTTAATTGCAAACCCAT+TGG 0.514028 3.4:-88229946 MS.gene41623:CDS
GAAGGCTATGACCCAACATA+TGG 0.515298 3.4:-88229996 MS.gene41623:CDS
AACAGCTATTGTAGAGGGAC+TGG 0.518619 3.4:-88233999 MS.gene41623:CDS
TACGCACACCATATCATGCT+TGG 0.519026 3.4:-88235939 None:intergenic
AAGCCTGTATTCATCAATAG+TGG 0.519791 3.4:+88232559 None:intergenic
CGAGTCGGCCTTCGGGATCC+CGG 0.521425 3.4:-88231371 MS.gene41623:CDS
AAGGGTCGACACAGCTCCAT+AGG 0.526780 3.4:-88230557 MS.gene41623:CDS
GCATCGGCAAACCTGAGAAT+CGG 0.527994 3.4:+88230869 None:intergenic
ATCTGAAATGAAGAAACCTA+TGG 0.528568 3.4:+88230541 None:intergenic
CATATGGTGCTAGACCTCTC+AGG 0.531368 3.4:-88229980 MS.gene41623:CDS
AAACCTGAGAATCGGTAAGA+TGG 0.531639 3.4:+88230877 None:intergenic
ACACCTCAAAATCAATTCCT+CGG 0.532915 3.4:+88230048 None:intergenic
TCATCCCCTTGAAAAGCCAC+AGG 0.534299 3.4:-88230414 MS.gene41623:intron
TACTTCCTGCTTCATCAATG+AGG 0.539893 3.4:+88231959 None:intergenic
AGAGGTCTAGCACCATATGT+TGG 0.540703 3.4:+88229984 None:intergenic
GGTTATGTTGGTTATGGAGA+AGG 0.541808 3.4:-88231014 MS.gene41623:CDS
GGGTCTAGTGCCATTGCTAA+GGG 0.542537 3.4:-88230575 MS.gene41623:CDS
CTTAAACCTTCACTTGGAAG+GGG 0.543263 3.4:-88233492 MS.gene41623:CDS
ATTGACCTCATTGATGAAGC+AGG 0.544458 3.4:-88231964 MS.gene41623:CDS
CAATCAGCCCAACACTTGCA+CGG 0.544552 3.4:+88234125 None:intergenic
AAAAGAGAGAGGAGAGCTAG+AGG 0.545345 3.4:-88233746 MS.gene41623:CDS
TTGCATACTCTCTAAAAGCC+CGG 0.546522 3.4:-88231893 MS.gene41623:CDS
AAGGACCTTGTCTGTAAGGA+AGG 0.546851 3.4:-88230014 MS.gene41623:CDS
AAAATCAATTCCTCGGGGCA+TGG 0.547293 3.4:+88230055 None:intergenic
CGTGTCATGTCCTTGGATGT+AGG 0.548440 3.4:-88233787 MS.gene41623:CDS
ATATAAAGTGCAACCTCACT+CGG 0.551522 3.4:+88232479 None:intergenic
TGAGTCAAGTATGAGTTCAC+TGG 0.553540 3.4:+88231696 None:intergenic
CGTTTAGTACCAAAAGAAAA+CGG 0.553800 3.4:+88235756 None:intergenic
AACTGACCCCTTCCAAGTGA+AGG 0.554059 3.4:+88233486 None:intergenic
CAGAATAGTAAAGTTGCTAT+GGG 0.554764 3.4:+88231344 None:intergenic
GAGCCAGGTTATGTGTCCAA+TGG 0.555649 3.4:-88234345 MS.gene41623:CDS
CGGGTCAAACCCAGATCAGT+TGG 0.556987 3.4:-88234418 MS.gene41623:CDS
TACTCAAGGGTGACTTGTGT+CGG 0.559111 3.4:+88229812 None:intergenic
CTCCATAACCAACATAACCT+GGG 0.561726 3.4:+88231018 None:intergenic
TTTCTCTCCAATAATCATCC+GGG 0.562344 3.4:+88231875 None:intergenic
AAAGCAACGAAAATATGTTC+AGG 0.563495 3.4:+88235678 None:intergenic
AACTGGAATTCCTGACCAGA+GGG 0.563796 3.4:+88231511 None:intergenic
CTTCTGTATATCTGCACTTG+TGG 0.566189 3.4:+88232055 None:intergenic
TTCACACACTTGTTCAATCA+GGG 0.566651 3.4:-88233563 MS.gene41623:CDS
GCTTTGATGAAAGTTGATGA+TGG 0.573069 3.4:-88235660 MS.gene41623:CDS
AATTTGCTTAAACCTTCACT+TGG 0.579870 3.4:-88233498 MS.gene41623:CDS
AATCAGCCCAACACTTGCAC+GGG 0.580208 3.4:+88234126 None:intergenic
GATCAAGCTGATTTATAACA+AGG 0.584174 3.4:+88229850 None:intergenic
TTCATTGATTTGGATGCCAA+TGG 0.585414 3.4:-88229879 MS.gene41623:CDS
TTGTTCAATCAGGGACAACC+GGG 0.588641 3.4:-88233554 MS.gene41623:CDS
TATGTTGGTTATGGAGAAGG+GGG 0.590352 3.4:-88231011 MS.gene41623:CDS
TCAATCAGGGACAACCGGGA+GGG 0.591333 3.4:-88233550 MS.gene41623:CDS
GGAACGTGTGATTGGACAAG+AGG 0.597583 3.4:-88231432 MS.gene41623:CDS
CTTGCTGAAAAGTGCAAGGA+AGG 0.599268 3.4:-88229912 MS.gene41623:CDS
GTTTGCAATTAAGTTTACAA+TGG 0.599993 3.4:+88229953 None:intergenic
TGTAGGACTATTAATGGCTG+GGG 0.603871 3.4:-88233770 MS.gene41623:CDS
AGATCTGGATAATAAACTAA+GGG 0.604041 3.4:-88231453 MS.gene41623:CDS
TGAGGTGTCTGAATCAGTCA+AGG 0.607039 3.4:-88230033 MS.gene41623:CDS
GCTCAACAGGATAGATGAAG+TGG 0.607491 3.4:-88230444 MS.gene41623:CDS
TGGGTCTACCGGGATCCCGA+AGG 0.609108 3.4:+88231363 None:intergenic
TTAGTTGAATCATTGAGATG+AGG 0.614874 3.4:+88235825 None:intergenic
CATTAATAGTCCTACATCCA+AGG 0.615573 3.4:+88233777 None:intergenic
ATAGCAACTTTACTATTCTG+TGG 0.617864 3.4:-88231341 MS.gene41623:CDS
TAGAAGAAAACCATTTACTG+TGG 0.618481 3.4:-88230970 MS.gene41623:CDS
GGGAAAACAGCTATTGTAGA+GGG 0.619458 3.4:-88234004 MS.gene41623:CDS
ATATAATGGATTGAAATCGA+TGG 0.619461 3.4:-88230504 MS.gene41623:CDS
TTATGGTGCATCTGGCATTG+AGG 0.619554 3.4:-88231722 MS.gene41623:CDS
CATAGCCTTCCTTACAGACA+AGG 0.620402 3.4:+88230009 None:intergenic
ACGTGTGATTGGACAAGAGG+AGG 0.625107 3.4:-88231429 MS.gene41623:CDS
ATCAAGCTGATTTATAACAA+GGG 0.625901 3.4:+88229851 None:intergenic
GGTAGTGATGACTTCAAATG+TGG 0.627780 3.4:-88230597 MS.gene41623:CDS
TGGGAAAACAGCTATTGTAG+AGG 0.636485 3.4:-88234005 MS.gene41623:CDS
TTATGTTGGTTATGGAGAAG+GGG 0.637629 3.4:-88231012 MS.gene41623:CDS
ATTGCTTGCTGAAAAGTGCA+AGG 0.637883 3.4:-88229916 MS.gene41623:CDS
TTCAATCAGGGACAACCGGG+AGG 0.637993 3.4:-88233551 MS.gene41623:CDS
GAACTGGAATTCCTGACCAG+AGG 0.642699 3.4:+88231510 None:intergenic
ATGGCTGGGGCAAAAGAGAG+AGG 0.645640 3.4:-88233757 MS.gene41623:CDS
AAAGTTGCTATGGGTCTACC+GGG 0.647341 3.4:+88231353 None:intergenic
TGCTCTATCACAATTCTGCG+TGG 0.649091 3.4:-88234158 MS.gene41623:CDS
TTTACAATGGCTCTCCTGAG+AGG 0.650300 3.4:+88229966 None:intergenic
CCAGGTTATGTGTCCAATGG+GGG 0.650317 3.4:-88234342 MS.gene41623:CDS
CGATGGTAATTGAAGAACTG+AGG 0.650720 3.4:-88230487 MS.gene41623:CDS
TCCATAACCAACATAACCTG+GGG 0.651186 3.4:+88231019 None:intergenic
GCCAGGTTATGTGTCCAATG+GGG 0.659821 3.4:-88234343 MS.gene41623:CDS
AAAAGGATAAGGCTTTGGCA+CGG 0.663550 3.4:-88232529 MS.gene41623:CDS
TTGGATTGATGAGCCGAGTG+AGG 0.663720 3.4:-88232492 MS.gene41623:intron
GCTGTGTCGACCCTTAGCAA+TGG 0.676540 3.4:+88230565 None:intergenic
GTAGTGATGACTTCAAATGT+GGG 0.692379 3.4:-88230596 MS.gene41623:CDS
AGGATAAGGCTTTGGCACGG+CGG 0.694664 3.4:-88232526 MS.gene41623:CDS
CAACAGGATAGATGAAGTGG+TGG 0.695003 3.4:-88230441 MS.gene41623:CDS
ACAACAAATCTATATCACAA+AGG 0.695091 3.4:-88234317 MS.gene41623:CDS
ACCTCAAAATCAATTCCTCG+GGG 0.719499 3.4:+88230050 None:intergenic
TCTGTGAAGAGATCTCGAGT+CGG 0.722132 3.4:-88231386 MS.gene41623:CDS
TAGTGATGACTTCAAATGTG+GGG 0.732127 3.4:-88230595 MS.gene41623:CDS
GTGAAAAGGACCATGCCCCG+AGG 0.751275 3.4:-88230065 MS.gene41623:CDS
CCATAACCAACATAACCTGG+GGG 0.752062 3.4:+88231020 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AACAATAAACATAAAAATTT+AGG + chr3.4:88235073-88235092 None:intergenic 10.0%
!! ACAATAAACATAAAAATTTA+GGG + chr3.4:88235072-88235091 None:intergenic 10.0%
!! AACAAAAGAAAAACAAATAT+TGG + chr3.4:88231164-88231183 None:intergenic 15.0%
!! ACTTATAATATATTTCCATT+TGG - chr3.4:88230152-88230171 MS.gene41623:intron 15.0%
!! AGATAGAAACATATTAATTA+AGG + chr3.4:88231880-88231899 None:intergenic 15.0%
!! AGATCAAATTATGATTAAAA+TGG + chr3.4:88233585-88233604 None:intergenic 15.0%
!! CAATTTAAATTCAACTTTAA+AGG - chr3.4:88230600-88230619 MS.gene41623:CDS 15.0%
!! TAGTTTGAAAAATATTCTTT+GGG - chr3.4:88231050-88231069 MS.gene41623:CDS 15.0%
!! TCTTTGCAATAAATAATTAA+GGG + chr3.4:88233417-88233436 None:intergenic 15.0%
!! TTAAATTTAACTGCTTAAAA+CGG + chr3.4:88235491-88235510 None:intergenic 15.0%
!! TTAAGATTGTTATAGAAAAA+AGG - chr3.4:88233469-88233488 MS.gene41623:intron 15.0%
!!! ATTATTTAGTCATTTTTGTT+TGG - chr3.4:88235444-88235463 MS.gene41623:intron 15.0%
!! AAGCAGTTAAATTTAAATAC+TGG - chr3.4:88235495-88235514 MS.gene41623:intron 20.0%
!! AGAAGAATGTTAAATATATC+TGG + chr3.4:88234824-88234843 None:intergenic 20.0%
!! AGTTTCATTTAAAAATGCAT+TGG - chr3.4:88235121-88235140 MS.gene41623:intron 20.0%
!! AGTTTGAAAAATATTCTTTG+GGG - chr3.4:88231051-88231070 MS.gene41623:CDS 20.0%
!! ATAAAAGATATAATAGAGTC+AGG - chr3.4:88232033-88232052 MS.gene41623:CDS 20.0%
!! ATAAATATTCAAGTATCACT+TGG + chr3.4:88232326-88232345 None:intergenic 20.0%
!! ATATATTTCCATTTGGTATT+TGG - chr3.4:88230159-88230178 MS.gene41623:intron 20.0%
!! ATGTTTATTGTTTGAAAAAC+TGG - chr3.4:88235081-88235100 MS.gene41623:intron 20.0%
!! CTAGTTTGAAAAATATTCTT+TGG - chr3.4:88231049-88231068 MS.gene41623:CDS 20.0%
!! CTCTTTGCAATAAATAATTA+AGG + chr3.4:88233418-88233437 None:intergenic 20.0%
!! TAACATTCTTCTTCAATTAA+TGG - chr3.4:88234832-88234851 MS.gene41623:intron 20.0%
!!! ATGAATTTTTCTTGAATAGT+TGG - chr3.4:88233002-88233021 MS.gene41623:intron 20.0%
!!! CTTTTATTAATTTTGTAACG+CGG + chr3.4:88232020-88232039 None:intergenic 20.0%
!!! GTTTTATGATTTGATTTTGA+TGG - chr3.4:88231501-88231520 MS.gene41623:CDS 20.0%
!!! TCCATATATTTTCATGTTTA+AGG - chr3.4:88232770-88232789 MS.gene41623:intron 20.0%
!!! TGATCATTTTTGTATAAGAT+GGG - chr3.4:88233060-88233079 MS.gene41623:intron 20.0%
!!! TTAATATGTTTCTATCTACT+TGG - chr3.4:88231883-88231902 MS.gene41623:CDS 20.0%
!!! TTTGTTTTTCTTTTGTTTTG+TGG - chr3.4:88231167-88231186 MS.gene41623:intron 20.0%
!!! TTTTGTAATTTTAATTGGGA+GGG - chr3.4:88232896-88232915 MS.gene41623:intron 20.0%
!!! TTTTTGTAATTTTAATTGGG+AGG - chr3.4:88232895-88232914 MS.gene41623:intron 20.0%
!!! TTTTTTTGGCATTAATAATG+AGG - chr3.4:88234504-88234523 MS.gene41623:intron 20.0%
! AAGTTGTCTTTATGAAATAC+TGG - chr3.4:88232531-88232550 MS.gene41623:CDS 25.0%
! ACAACAAATCTATATCACAA+AGG - chr3.4:88231422-88231441 MS.gene41623:CDS 25.0%
! ACTAGCAATTGTTTATTTGA+TGG + chr3.4:88232365-88232384 None:intergenic 25.0%
! AGAAACTTATTTGAACCAAA+TGG - chr3.4:88230271-88230290 MS.gene41623:intron 25.0%
! AGAGAAAGTTTCATGTTTAA+AGG + chr3.4:88234931-88234950 None:intergenic 25.0%
! AGATCTGGATAATAAACTAA+GGG - chr3.4:88234286-88234305 MS.gene41623:intron 25.0%
! AGCATACACATAAAAAAACT+TGG + chr3.4:88235553-88235572 None:intergenic 25.0%
! AGTTGTCTTTATGAAATACT+GGG - chr3.4:88232532-88232551 MS.gene41623:CDS 25.0%
! ATCAAATGTACCAAGTTTAT+TGG - chr3.4:88233501-88233520 MS.gene41623:CDS 25.0%
! ATTCAAGAAAAATTCATCAG+AGG + chr3.4:88232999-88233018 None:intergenic 25.0%
! CAAAATCAATCTCAATTTGT+CGG - chr3.4:88230954-88230973 MS.gene41623:CDS 25.0%
! CATTTCTATATCTTCCTTTA+CGG - chr3.4:88234954-88234973 MS.gene41623:intron 25.0%
! GAGAAAGTTTCATGTTTAAA+GGG + chr3.4:88234930-88234949 None:intergenic 25.0%
! GATGCAATTAAGATACTTAT+GGG - chr3.4:88233637-88233656 MS.gene41623:intron 25.0%
! GCCTTAAACATGAAAATATA+TGG + chr3.4:88232774-88232793 None:intergenic 25.0%
! GTTTGCAATTAAGTTTACAA+TGG + chr3.4:88235789-88235808 None:intergenic 25.0%
! TAGATCTGGATAATAAACTA+AGG - chr3.4:88234285-88234304 MS.gene41623:intron 25.0%
! TGATGCAATTAAGATACTTA+TGG - chr3.4:88233636-88233655 MS.gene41623:intron 25.0%
! TGGTTCAAATAAGTTTCTTT+AGG + chr3.4:88230269-88230288 None:intergenic 25.0%
! TTAAACATGAAACTTTCTCT+TGG - chr3.4:88234931-88234950 MS.gene41623:intron 25.0%
! TTATTCATAGTGACAAGTTA+TGG + chr3.4:88233130-88233149 None:intergenic 25.0%
! TTCAATCCATTATATGATGT+TGG + chr3.4:88235230-88235249 None:intergenic 25.0%
!! ACAGTTACTTTGAAAAATGT+TGG + chr3.4:88232455-88232474 None:intergenic 25.0%
!! ATCAAGCTGATTTATAACAA+GGG + chr3.4:88235891-88235910 None:intergenic 25.0%
!! ATCTAAAATCGTAAGACAAA+TGG + chr3.4:88230889-88230908 None:intergenic 25.0%
!! CAGTTACTTTGAAAAATGTT+GGG + chr3.4:88232454-88232473 None:intergenic 25.0%
!! TTATAGTACATGTAACCTTT+TGG + chr3.4:88232654-88232673 None:intergenic 25.0%
!!! ATATAATGGATTGAAATCGA+TGG - chr3.4:88235235-88235254 MS.gene41623:intron 25.0%
!!! ATTTGGAGTATTGTTGTTTT+TGG - chr3.4:88230176-88230195 MS.gene41623:intron 25.0%
!!! GAACTTTTTAAGAATAATGC+TGG - chr3.4:88230432-88230451 MS.gene41623:CDS 25.0%
!!! GTGATCATTTTTGTATAAGA+TGG - chr3.4:88233059-88233078 MS.gene41623:intron 25.0%
!!! GTGTTCTTTTTTCATCTTAA+AGG + chr3.4:88233821-88233840 None:intergenic 25.0%
!!! TTCTTTGGGGTAAAATTTTA+AGG - chr3.4:88231064-88231083 MS.gene41623:CDS 25.0%
!!! TTGAAAAACTGGTTCTAATA+GGG - chr3.4:88235092-88235111 MS.gene41623:intron 25.0%
!!! TTTGAAAAACTGGTTCTAAT+AGG - chr3.4:88235091-88235110 MS.gene41623:intron 25.0%
AAAAAGCAATCCAATTCTTC+TGG - chr3.4:88231698-88231717 MS.gene41623:CDS 30.0%
AAAAGCAATCCAATTCTTCT+GGG - chr3.4:88231699-88231718 MS.gene41623:CDS 30.0%
AAACTAGTTATGCAACTCAA+AGG + chr3.4:88231036-88231055 None:intergenic 30.0%
AAACTTAATTGCAAACCCAT+TGG - chr3.4:88235793-88235812 MS.gene41623:CDS 30.0%
AAAGCAACGAAAATATGTTC+AGG + chr3.4:88230064-88230083 None:intergenic 30.0%
AACTTGTCGAAGTACATATT+TGG + chr3.4:88230705-88230724 None:intergenic 30.0%
ACAATACTCCAAATACCAAA+TGG + chr3.4:88230170-88230189 None:intergenic 30.0%
ACAGAATAGTAAAGTTGCTA+TGG + chr3.4:88234399-88234418 None:intergenic 30.0%
ACCAAACAAACCAATAAACT+TGG + chr3.4:88233514-88233533 None:intergenic 30.0%
ACGTATAAGATTAAGGTTAG+AGG - chr3.4:88232386-88232405 MS.gene41623:intron 30.0%
AGACAATATGACATAGTTCA+TGG - chr3.4:88230769-88230788 MS.gene41623:intron 30.0%
AGTTATATTCAACAACGCTA+AGG - chr3.4:88232810-88232829 MS.gene41623:intron 30.0%
ATAGCAACTTTACTATTCTG+TGG - chr3.4:88234398-88234417 MS.gene41623:CDS 30.0%
ATATACAGAAGATGCCATAA+AGG - chr3.4:88233696-88233715 MS.gene41623:intron 30.0%
ATATGTACTTCGACAAGTTT+CGG - chr3.4:88230706-88230725 MS.gene41623:intron 30.0%
ATGAACTATGTCATATTGTC+TGG + chr3.4:88230770-88230789 None:intergenic 30.0%
ATTGCAAAGAGAGAAATAGA+TGG - chr3.4:88233427-88233446 MS.gene41623:intron 30.0%
ATTTCTCTCCAATAATCATC+CGG + chr3.4:88233868-88233887 None:intergenic 30.0%
CAAGATTAGCATTTAACATC+TGG - chr3.4:88232481-88232500 MS.gene41623:intron 30.0%
CAGAATAGTAAAGTTGCTAT+GGG + chr3.4:88234398-88234417 None:intergenic 30.0%
CATACTATCATTTCAGGAAA+CGG - chr3.4:88234631-88234650 MS.gene41623:intron 30.0%
CGTTTAGTACCAAAAGAAAA+CGG + chr3.4:88229986-88230005 None:intergenic 30.0%
CTTAAATATTATGGTGCATC+TGG - chr3.4:88234009-88234028 MS.gene41623:CDS 30.0%
CTTCTTCAATTAATGGAAGA+TGG - chr3.4:88234839-88234858 MS.gene41623:intron 30.0%
GACAAACCAACATCATATAA+TGG - chr3.4:88235221-88235240 MS.gene41623:intron 30.0%
GAGTTGTGTTAATATATGTG+TGG - chr3.4:88232084-88232103 MS.gene41623:CDS 30.0%
GATAACCAAGAAACAAATGT+TGG - chr3.4:88230378-88230397 MS.gene41623:intron 30.0%
GATGTGACTCTTAATTTACT+AGG - chr3.4:88234894-88234913 MS.gene41623:intron 30.0%
GCTAGTAACGTATAAGATTA+AGG - chr3.4:88232379-88232398 MS.gene41623:intron 30.0%
GTTAGACATGAGTGAATATA+TGG - chr3.4:88234664-88234683 MS.gene41623:intron 30.0%
GTTCAGGATCAACAAAATTA+TGG + chr3.4:88230048-88230067 None:intergenic 30.0%
GTTCTGCTAGAATTCTTTAT+AGG - chr3.4:88230104-88230123 MS.gene41623:intron 30.0%
GTTTCTTGGTTATCATTGAT+TGG + chr3.4:88230372-88230391 None:intergenic 30.0%
TAGAAGAAAACCATTTACTG+TGG - chr3.4:88234769-88234788 MS.gene41623:intron 30.0%
TAGTCTGACAACCAATTAAA+CGG + chr3.4:88230526-88230545 None:intergenic 30.0%
TATGCAAATGATTTCAGACT+CGG - chr3.4:88231301-88231320 MS.gene41623:CDS 30.0%
TCAAACAAAACCACAGTAAA+TGG + chr3.4:88234782-88234801 None:intergenic 30.0%
TCCTGAAATGATAGTATGAA+AGG + chr3.4:88234629-88234648 None:intergenic 30.0%
TGTGCATATCTATCTAGATT+TGG - chr3.4:88234131-88234150 MS.gene41623:CDS 30.0%
TTAGTTGAATCATTGAGATG+AGG + chr3.4:88229917-88229936 None:intergenic 30.0%
TTCTTTGAACTTCAACTTCT+CGG + chr3.4:88231653-88231672 None:intergenic 30.0%
TTGCATACTAGCAACATTAA+TGG + chr3.4:88231288-88231307 None:intergenic 30.0%
! AATAGCCAACATTTGTTTCT+TGG + chr3.4:88230386-88230405 None:intergenic 30.0%
! AATTTGCTTAAACCTTCACT+TGG - chr3.4:88232241-88232260 MS.gene41623:intron 30.0%
! ATCTGAAATGAAGAAACCTA+TGG + chr3.4:88235201-88235220 None:intergenic 30.0%
! GAGAGCATGCTTAAATATTA+TGG - chr3.4:88234000-88234019 MS.gene41623:CDS 30.0%
! GATCAAGCTGATTTATAACA+AGG + chr3.4:88235892-88235911 None:intergenic 30.0%
! TCGTAAGACAAATGGTATTT+TGG + chr3.4:88230881-88230900 None:intergenic 30.0%
! TGGTTTTCTTCTAATAGCTT+CGG + chr3.4:88234762-88234781 None:intergenic 30.0%
! TTTTTCTCATGTTCATTCTC+TGG - chr3.4:88231541-88231560 MS.gene41623:CDS 30.0%
!! ACCAAGTTTATTGGTTTGTT+TGG - chr3.4:88233510-88233529 MS.gene41623:CDS 30.0%
!! ACTAACTACGTTGATGATAA+TGG - chr3.4:88229932-88229951 MS.gene41623:CDS 30.0%
!! ATACAGGCTTCATTTTGAAA+AGG - chr3.4:88233193-88233212 MS.gene41623:intron 30.0%
!! GATTTGATTTTGATGGTTGA+AGG - chr3.4:88231508-88231527 MS.gene41623:CDS 30.0%
!! GCATTTGATAATGAGTATGT+TGG - chr3.4:88234081-88234100 MS.gene41623:CDS 30.0%
!! GCTTCATTTTGAAAAGGATA+AGG - chr3.4:88233199-88233218 MS.gene41623:intron 30.0%
!! GTTTTAGGTGTATAGAAGTT+AGG - chr3.4:88234180-88234199 MS.gene41623:intron 30.0%
!! TTTTGAAAAGGATAAGGCTT+TGG - chr3.4:88233205-88233224 MS.gene41623:intron 30.0%
!!! ATCTAGATTTGGTTTTTGAG+TGG - chr3.4:88234142-88234161 MS.gene41623:CDS 30.0%
!!! CATTAGCTTTTTAAAGAGTG+TGG - chr3.4:88231117-88231136 MS.gene41623:intron 30.0%
!!! TGTCGGTGAAACAATTTTTT+GGG - chr3.4:88230971-88230990 MS.gene41623:CDS 30.0%
!!! TTGGATTGCTTTTTGTCTTT+CGG + chr3.4:88231692-88231711 None:intergenic 30.0%
!!! TTGTCGGTGAAACAATTTTT+TGG - chr3.4:88230970-88230989 MS.gene41623:CDS 30.0%
!!! TTTCTTGCCTTTTGTTTTAG+CGG + chr3.4:88231467-88231486 None:intergenic 30.0%
AAACTAGCAGATGAGATTAC+AGG + chr3.4:88232295-88232314 None:intergenic 35.0%
AACTAGCAGATGAGATTACA+GGG + chr3.4:88232294-88232313 None:intergenic 35.0%
AACTGAACTAGCAAAGTCTT+TGG - chr3.4:88234439-88234458 MS.gene41623:intron 35.0%
AAGAAGTCTTCTGTTAGATC+TGG - chr3.4:88234271-88234290 MS.gene41623:intron 35.0%
AAGCCTGTATTCATCAATAG+TGG + chr3.4:88233183-88233202 None:intergenic 35.0%
ACACCTCAAAATCAATTCCT+CGG + chr3.4:88235694-88235713 None:intergenic 35.0%
ACTCAAAGGACTTATAAACC+AGG + chr3.4:88231022-88231041 None:intergenic 35.0%
AGATATGAGTGAGTGTTAAC+TGG - chr3.4:88232597-88232616 MS.gene41623:intron 35.0%
AGTTGACATTTCTTACTCTC+AGG - chr3.4:88233972-88233991 MS.gene41623:CDS 35.0%
ATAAAATTCCAACAGCAGAG+AGG + chr3.4:88232868-88232887 None:intergenic 35.0%
ATATAAAGTGCAACCTCACT+CGG + chr3.4:88233263-88233282 None:intergenic 35.0%
ATATTTGGAAACACAGCCAA+TGG + chr3.4:88230690-88230709 None:intergenic 35.0%
ATGCAAATGATTTCAGACTC+GGG - chr3.4:88231302-88231321 MS.gene41623:CDS 35.0%
ATGTAGGACTATTAATGGCT+GGG - chr3.4:88231968-88231987 MS.gene41623:CDS 35.0%
ATTAAGAGTCACATCAGCAT+CGG + chr3.4:88234889-88234908 None:intergenic 35.0%
CAGCAAGATACATAGTTGAT+AGG - chr3.4:88233734-88233753 MS.gene41623:CDS 35.0%
CATTAATAGTCCTACATCCA+AGG + chr3.4:88231965-88231984 None:intergenic 35.0%
CATTCAGTGAGCAAGTTATT+AGG - chr3.4:88234692-88234711 MS.gene41623:intron 35.0%
CATTTCAGAACATCGAAAAG+AGG + chr3.4:88234551-88234570 None:intergenic 35.0%
CTACCACTATTGATGAATAC+AGG - chr3.4:88233177-88233196 MS.gene41623:intron 35.0%
CTTGGATGTAGGACTATTAA+TGG - chr3.4:88231963-88231982 MS.gene41623:CDS 35.0%
GAGACAAATCGTTCTCAAAA+CGG - chr3.4:88229842-88229861 MS.gene41623:CDS 35.0%
GATAGACACACCAATAGAAA+AGG + chr3.4:88231795-88231814 None:intergenic 35.0%
GCAGCAGCAAATCAAATATT+TGG + chr3.4:88235649-88235668 None:intergenic 35.0%
GCATTTAACATCTGGAAAGT+AGG - chr3.4:88232489-88232508 MS.gene41623:intron 35.0%
GCCTTTCATACTATCATTTC+AGG - chr3.4:88234625-88234644 MS.gene41623:intron 35.0%
GTAGTGATGACTTCAAATGT+GGG - chr3.4:88235143-88235162 MS.gene41623:intron 35.0%
TAATAGACTCACTGCTTAGA+TGG - chr3.4:88232571-88232590 MS.gene41623:CDS 35.0%
TACAAAAGCGACAGTTACAA+AGG + chr3.4:88233321-88233340 None:intergenic 35.0%
TAGTGATGACTTCAAATGTG+GGG - chr3.4:88235144-88235163 MS.gene41623:intron 35.0%
TCAAGTATCACTTGGAACAA+AGG + chr3.4:88232318-88232337 None:intergenic 35.0%
TCTCTTCACAGATCTAGAAA+TGG + chr3.4:88234345-88234364 None:intergenic 35.0%
TGAGGGCAAATTTGTATGTT+CGG - chr3.4:88232710-88232729 MS.gene41623:intron 35.0%
TGTCTTTATGAAATACTGGG+AGG - chr3.4:88232535-88232554 MS.gene41623:CDS 35.0%
TTAACATCTGGAAAGTAGGA+AGG - chr3.4:88232493-88232512 MS.gene41623:CDS 35.0%
TTAATATATGTGTGGCACAC+AGG - chr3.4:88232092-88232111 MS.gene41623:CDS 35.0%
TTCAAGACTACAAAAAGAGC+TGG - chr3.4:88231357-88231376 MS.gene41623:CDS 35.0%
TTCACACACTTGTTCAATCA+GGG - chr3.4:88232176-88232195 MS.gene41623:intron 35.0%
TTTCTCTCCAATAATCATCC+GGG + chr3.4:88233867-88233886 None:intergenic 35.0%
! AACTGTGTGTTGTTGTGTAT+AGG - chr3.4:88233612-88233631 MS.gene41623:intron 35.0%
! ACTGGCAATTCTTATTTCTC+GGG - chr3.4:88231758-88231777 MS.gene41623:intron 35.0%
! AGAAGTGTAGTAACTGTAAC+TGG + chr3.4:88232428-88232447 None:intergenic 35.0%
! AGAAGTTGCTCCTTTTCTAT+TGG - chr3.4:88231782-88231801 MS.gene41623:intron 35.0%
! ATGTTTAAGGCTGTGAATAC+TGG - chr3.4:88232783-88232802 MS.gene41623:intron 35.0%
! CAAAACGGTTTTCTTGATTC+TGG - chr3.4:88229857-88229876 MS.gene41623:CDS 35.0%
! CTGACATGTTATTGCGTTTT+AGG - chr3.4:88234165-88234184 MS.gene41623:CDS 35.0%
! GACTGGCAATTCTTATTTCT+CGG - chr3.4:88231757-88231776 MS.gene41623:intron 35.0%
! GTTATGTTGGTTATGGAGAA+GGG - chr3.4:88234726-88234745 MS.gene41623:intron 35.0%
! GTTTTGTGGCAATAATGATC+TGG - chr3.4:88231181-88231200 MS.gene41623:intron 35.0%
! TGACACTGTCTTCATTGATT+TGG - chr3.4:88235850-88235869 MS.gene41623:CDS 35.0%
! TGAGATTGGTAATTGGGATT+TGG - chr3.4:88230730-88230749 MS.gene41623:intron 35.0%
! TTATGTTGGTTATGGAGAAG+GGG - chr3.4:88234727-88234746 MS.gene41623:intron 35.0%
! TTGTTTGGAGAGAGTAGTTT+TGG - chr3.4:88232924-88232943 MS.gene41623:intron 35.0%
!! ATGAGGTCAATAGCTTTATC+AGG + chr3.4:88233766-88233785 None:intergenic 35.0%
!! ATTTTGACCAGAGTATGCAA+GGG + chr3.4:88230940-88230959 None:intergenic 35.0%
!! CTAATAACTTGCTCACTGAA+TGG + chr3.4:88234694-88234713 None:intergenic 35.0%
!! GCTTTGATGAAAGTTGATGA+TGG - chr3.4:88230079-88230098 MS.gene41623:CDS 35.0%
!! GTTTTGGACTTTGAATTCTC+TGG - chr3.4:88232940-88232959 MS.gene41623:intron 35.0%
!! TATAACAAGGGTGTTACCAT+TGG + chr3.4:88235879-88235898 None:intergenic 35.0%
!! TTCATTGATTTGGATGCCAA+TGG - chr3.4:88235860-88235879 MS.gene41623:CDS 35.0%
!!! ACAGGATTGTTTTAGCTCAT+CGG - chr3.4:88232110-88232129 MS.gene41623:intron 35.0%
!!! TCACACAAGGTGTGTTTTTT+TGG - chr3.4:88234490-88234509 MS.gene41623:intron 35.0%
AAACCTGAGAATCGGTAAGA+TGG + chr3.4:88234865-88234884 None:intergenic 40.0%
AAACTAAGGGAACGTGTGAT+TGG - chr3.4:88234299-88234318 MS.gene41623:intron 40.0%
AAAGAATGACATCACCTGCA+AGG + chr3.4:88232144-88232163 None:intergenic 40.0%
ACCTCAAAATCAATTCCTCG+GGG + chr3.4:88235692-88235711 None:intergenic 40.0%
ATTGACCTCATTGATGAAGC+AGG - chr3.4:88233775-88233794 MS.gene41623:CDS 40.0%
CAAATGAACTGCAGCCTTTA+TGG + chr3.4:88233713-88233732 None:intergenic 40.0%
CACCTCAAAATCAATTCCTC+GGG + chr3.4:88235693-88235712 None:intergenic 40.0%
CCTTATAGCGACAGCTAAAA+CGG - chr3.4:88233546-88233565 MS.gene41623:CDS 40.0%
CGATGGTAATTGAAGAACTG+AGG - chr3.4:88235252-88235271 MS.gene41623:intron 40.0%
CTAAAAGCCCGGATGATTAT+TGG - chr3.4:88233857-88233876 MS.gene41623:intron 40.0%
CTCCATAACCAACATAACCT+GGG + chr3.4:88234724-88234743 None:intergenic 40.0%
CTTAAACCTTCACTTGGAAG+GGG - chr3.4:88232247-88232266 MS.gene41623:intron 40.0%
CTTCTGTATATCTGCACTTG+TGG + chr3.4:88233687-88233706 None:intergenic 40.0%
GACAGTTACAAAGGAGAAGA+GGG + chr3.4:88233312-88233331 None:intergenic 40.0%
GATCGGTAAGTATTCACACA+AGG - chr3.4:88234477-88234496 MS.gene41623:intron 40.0%
GATGTAGGACTATTAATGGC+TGG - chr3.4:88231967-88231986 MS.gene41623:CDS 40.0%
GCAACTGTTGCTATATGATC+AGG + chr3.4:88234206-88234225 None:intergenic 40.0%
GCAATCTGTTGCTGAAATGA+GGG - chr3.4:88232693-88232712 MS.gene41623:intron 40.0%
GCCTCCAAAGTGAATATCAT+CGG + chr3.4:88235394-88235413 None:intergenic 40.0%
GCTTAAACCTTCACTTGGAA+GGG - chr3.4:88232246-88232265 MS.gene41623:intron 40.0%
GGGAAAACAGCTATTGTAGA+GGG - chr3.4:88231735-88231754 MS.gene41623:CDS 40.0%
GGTAGTGATGACTTCAAATG+TGG - chr3.4:88235142-88235161 MS.gene41623:intron 40.0%
GTACCAAAAGAAAACGGAAC+AGG + chr3.4:88229980-88229999 None:intergenic 40.0%
GTCCACGCTTAAAATGGTAA+TGG - chr3.4:88233900-88233919 MS.gene41623:intron 40.0%
GTTCACACACTTGTTCAATC+AGG - chr3.4:88232175-88232194 MS.gene41623:intron 40.0%
TAAAGTTGCTATGGGTCTAC+CGG + chr3.4:88234390-88234409 None:intergenic 40.0%
TACTTCCTGCTTCATCAATG+AGG + chr3.4:88233783-88233802 None:intergenic 40.0%
TACTTGCATAGAAGCCGTAA+AGG + chr3.4:88234971-88234990 None:intergenic 40.0%
TAGTGACAGAAGCTACACTT+TGG - chr3.4:88230659-88230678 MS.gene41623:intron 40.0%
TATCGAACCTGCAACAACTA+AGG + chr3.4:88230341-88230360 None:intergenic 40.0%
TCCATAACCAACATAACCTG+GGG + chr3.4:88234723-88234742 None:intergenic 40.0%
TCTCCATAACCAACATAACC+TGG + chr3.4:88234725-88234744 None:intergenic 40.0%
TCTGACAACCAATTAAACGG+AGG + chr3.4:88230523-88230542 None:intergenic 40.0%
TCTGTACATGTCACATCGAT+TGG - chr3.4:88234583-88234602 MS.gene41623:intron 40.0%
TGAGTCAAGTATGAGTTCAC+TGG + chr3.4:88234046-88234065 None:intergenic 40.0%
TGCAATCTGTTGCTGAAATG+AGG - chr3.4:88232692-88232711 MS.gene41623:intron 40.0%
TGCTTAAACCTTCACTTGGA+AGG - chr3.4:88232245-88232264 MS.gene41623:intron 40.0%
TGGGAAAACAGCTATTGTAG+AGG - chr3.4:88231734-88231753 MS.gene41623:CDS 40.0%
TGTAGGACTATTAATGGCTG+GGG - chr3.4:88231969-88231988 MS.gene41623:CDS 40.0%
TGTTCAGTCCACGCTTAAAA+TGG - chr3.4:88233894-88233913 MS.gene41623:intron 40.0%
TTCAGGAAACGGACATGATA+AGG - chr3.4:88234642-88234661 MS.gene41623:intron 40.0%
! AAAAGGATAAGGCTTTGGCA+CGG - chr3.4:88233210-88233229 MS.gene41623:intron 40.0%
! ATATCATCGTGGCTTGTGAT+TGG - chr3.4:88231208-88231227 MS.gene41623:intron 40.0%
! ATTGCTTGCTGAAAAGTGCA+AGG - chr3.4:88235823-88235842 MS.gene41623:CDS 40.0%
! GGTTATGTTGGTTATGGAGA+AGG - chr3.4:88234725-88234744 MS.gene41623:intron 40.0%
! TATGTTGGTTATGGAGAAGG+GGG - chr3.4:88234728-88234747 MS.gene41623:intron 40.0%
! TGCCATTACCATTTTAAGCG+TGG + chr3.4:88233905-88233924 None:intergenic 40.0%
! TTCGGCTGAGATTGGTAATT+GGG - chr3.4:88230724-88230743 MS.gene41623:intron 40.0%
! TTGCATACTCTCTAAAAGCC+CGG - chr3.4:88233846-88233865 MS.gene41623:intron 40.0%
! TTTCGGCTGAGATTGGTAAT+TGG - chr3.4:88230723-88230742 MS.gene41623:intron 40.0%
! TTTTGACCAGAGTATGCAAG+GGG + chr3.4:88230939-88230958 None:intergenic 40.0%
!! ATTGGGAGGGATTTGTTGTT+TGG - chr3.4:88232909-88232928 MS.gene41623:intron 40.0%
!! CGCTTAAAATGGTAATGGCA+TGG - chr3.4:88233905-88233924 MS.gene41623:intron 40.0%
!! GATTTTGACCAGAGTATGCA+AGG + chr3.4:88230941-88230960 None:intergenic 40.0%
!! TCTTTGGCTGCATGCTATTT+TGG - chr3.4:88234455-88234474 MS.gene41623:intron 40.0%
!!! ATTTTTTGGGCTACCCGAAA+AGG - chr3.4:88230984-88231003 MS.gene41623:CDS 40.0%
!!! CATGTAACCTTTTGGTTCCA+TGG + chr3.4:88232646-88232665 None:intergenic 40.0%
AAAAGAGAGAGGAGAGCTAG+AGG - chr3.4:88231993-88232012 MS.gene41623:CDS 45.0%
AAAAGGCTGCTGTCATATCC+TGG - chr3.4:88231001-88231020 MS.gene41623:CDS 45.0%
AAAATCAATTCCTCGGGGCA+TGG + chr3.4:88235687-88235706 None:intergenic 45.0%
AAAGTTGCTATGGGTCTACC+GGG + chr3.4:88234389-88234408 None:intergenic 45.0%
AACAGCTATTGTAGAGGGAC+TGG - chr3.4:88231740-88231759 MS.gene41623:CDS 45.0%
AACTGGAATTCCTGACCAGA+GGG + chr3.4:88234231-88234250 None:intergenic 45.0%
AAGGACCTTGTCTGTAAGGA+AGG - chr3.4:88235725-88235744 MS.gene41623:CDS 45.0%
AAGGCACGTGCAATTACAGA+AGG + chr3.4:88231861-88231880 None:intergenic 45.0%
AAGTTATTAGGATCTCCCCC+AGG - chr3.4:88234704-88234723 MS.gene41623:intron 45.0%
ACCAAAACTCAACGAACCTG+TGG + chr3.4:88235344-88235363 None:intergenic 45.0%
AGAGGTCTAGCACCATATGT+TGG + chr3.4:88235758-88235777 None:intergenic 45.0%
AGCCAGGTTATGTGTCCAAT+GGG - chr3.4:88231395-88231414 MS.gene41623:CDS 45.0%
AGGCACGTGCAATTACAGAA+GGG + chr3.4:88231860-88231879 None:intergenic 45.0%
AGTCAAGGACCTTGTCTGTA+AGG - chr3.4:88235721-88235740 MS.gene41623:CDS 45.0%
CAAAAAGAGCTGGCTAGAGA+TGG - chr3.4:88231367-88231386 MS.gene41623:CDS 45.0%
CAACAGGATAGATGAAGTGG+TGG - chr3.4:88235298-88235317 MS.gene41623:intron 45.0%
CAAGCAATGCTTCAGCCAAT+GGG + chr3.4:88235811-88235830 None:intergenic 45.0%
CATAGCCTTCCTTACAGACA+AGG + chr3.4:88235733-88235752 None:intergenic 45.0%
CATTTCTTACTCTCAGGTGC+AGG - chr3.4:88233978-88233997 MS.gene41623:CDS 45.0%
CCATAACCAACATAACCTGG+GGG + chr3.4:88234722-88234741 None:intergenic 45.0%
CGACAGTTACAAAGGAGAAG+AGG + chr3.4:88233313-88233332 None:intergenic 45.0%
CGATCAAAGTGAAACCAACG+CGG + chr3.4:88230637-88230656 None:intergenic 45.0%
CTCGCCGATGATATTCACTT+TGG - chr3.4:88235387-88235406 MS.gene41623:intron 45.0%
CTTGTTCAATCAGGGACAAC+CGG - chr3.4:88232184-88232203 MS.gene41623:intron 45.0%
GAAGGCTATGACCCAACATA+TGG - chr3.4:88235743-88235762 MS.gene41623:CDS 45.0%
GACAAAACGTGTCATGTCCT+TGG - chr3.4:88231945-88231964 MS.gene41623:CDS 45.0%
GACAGCTAAAACGGAACGAA+GGG - chr3.4:88233555-88233574 MS.gene41623:CDS 45.0%
GAGGTCTAGCACCATATGTT+GGG + chr3.4:88235757-88235776 None:intergenic 45.0%
GATGCAATACACTGCACAGA+CGG + chr3.4:88233158-88233177 None:intergenic 45.0%
GCAGCTCATGCAAAGAACAT+CGG + chr3.4:88233942-88233961 None:intergenic 45.0%
GCCGATGATATTCACTTTGG+AGG - chr3.4:88235390-88235409 MS.gene41623:intron 45.0%
GCTCAACAGGATAGATGAAG+TGG - chr3.4:88235295-88235314 MS.gene41623:intron 45.0%
GGATCTGCCGCTAAAACAAA+AGG - chr3.4:88231457-88231476 MS.gene41623:CDS 45.0%
GGGCTGATTGATCCAGTTAT+TGG - chr3.4:88231627-88231646 MS.gene41623:intron 45.0%
GGTAATTGGGATTTGGACTC+TGG - chr3.4:88230737-88230756 MS.gene41623:intron 45.0%
TATCGGTCCTTAGTTGTTGC+AGG - chr3.4:88230331-88230350 MS.gene41623:intron 45.0%
TCAACTTCTCGGCCAATAAC+TGG + chr3.4:88231642-88231661 None:intergenic 45.0%
TCTGTGAAGAGATCTCGAGT+CGG - chr3.4:88234353-88234372 MS.gene41623:CDS 45.0%
TCTTGCATATCTCCACTCCA+TGG - chr3.4:88232626-88232645 MS.gene41623:intron 45.0%
TGCTCTATCACAATTCTGCG+TGG - chr3.4:88231581-88231600 MS.gene41623:intron 45.0%
TTACTATTCTGTGGCCCAAC+TGG - chr3.4:88234407-88234426 MS.gene41623:CDS 45.0%
TTAGCATCACGTGTCAACAC+CGG - chr3.4:88230298-88230317 MS.gene41623:intron 45.0%
TTATGGTGCATCTGGCATTG+AGG - chr3.4:88234017-88234036 MS.gene41623:CDS 45.0%
TTGTTCAATCAGGGACAACC+GGG - chr3.4:88232185-88232204 MS.gene41623:intron 45.0%
TTTACAATGGCTCTCCTGAG+AGG + chr3.4:88235776-88235795 None:intergenic 45.0%
TTTGACCAGAGTATGCAAGG+GGG + chr3.4:88230938-88230957 None:intergenic 45.0%
! AACGAACCTGTGGCTTTTCA+AGG + chr3.4:88235334-88235353 None:intergenic 45.0%
! ACAGAAGCTACACTTTGGAG+AGG - chr3.4:88230664-88230683 MS.gene41623:intron 45.0%
! ACGAACCTGTGGCTTTTCAA+GGG + chr3.4:88235333-88235352 None:intergenic 45.0%
! CGACCTGTTCCGTTTTCTTT+TGG - chr3.4:88229974-88229993 MS.gene41623:CDS 45.0%
! CTTGCTGAAAAGTGCAAGGA+AGG - chr3.4:88235827-88235846 MS.gene41623:CDS 45.0%
! GATATGACAGCAGCCTTTTC+GGG + chr3.4:88231000-88231019 None:intergenic 45.0%
! GATCTGGAGCTATATCATCG+TGG - chr3.4:88231197-88231216 MS.gene41623:intron 45.0%
! GGATATGACAGCAGCCTTTT+CGG + chr3.4:88231001-88231020 None:intergenic 45.0%
! TGAGGTGTCTGAATCAGTCA+AGG - chr3.4:88235706-88235725 MS.gene41623:CDS 45.0%
!! AGATTTGTTGTGTCCCCCAT+TGG + chr3.4:88231413-88231432 None:intergenic 45.0%
!! TCTATATCACAAAGGCGCTC+TGG - chr3.4:88231430-88231449 MS.gene41623:CDS 45.0%
!!! AACCTTTTGGTTCCATGGAG+TGG + chr3.4:88232641-88232660 None:intergenic 45.0%
!!! CCGTTTTAGCTGTCGCTATA+AGG + chr3.4:88233549-88233568 None:intergenic 45.0%
!!! GGCTGCATGCTATTTTGGAT+CGG - chr3.4:88234460-88234479 MS.gene41623:intron 45.0%
!! AATAAAAAAATAAAAATAAG+CGG - chr3.4:88235525-88235544 MS.gene41623:intron 5.0%
!! TTTAAGAAAATTAATTTATT+TGG - chr3.4:88230405-88230424 MS.gene41623:intron 5.0%
!!! ATTTTTTTTGTAATTTTAAT+TGG - chr3.4:88232891-88232910 MS.gene41623:intron 5.0%
!!! TTTTTTTTGTAATTTTAATT+GGG - chr3.4:88232892-88232911 MS.gene41623:intron 5.0%
AACTGACCCCTTCCAAGTGA+AGG + chr3.4:88232256-88232275 None:intergenic 50.0%
AAGGAGAAGAGGGAGTCACT+TGG + chr3.4:88233302-88233321 None:intergenic 50.0%
AATCAGCCCAACACTTGCAC+GGG + chr3.4:88231616-88231635 None:intergenic 50.0%
ACAACCGGGAGGGGAAATAA+GGG - chr3.4:88232199-88232218 MS.gene41623:intron 50.0%
ACACCGGTCACGTGAAGTAT+CGG - chr3.4:88230314-88230333 MS.gene41623:intron 50.0%
ACGTGTGATTGGACAAGAGG+AGG - chr3.4:88234310-88234329 MS.gene41623:CDS 50.0%
ACTTGGAAGGGGTCAGTTTC+AGG - chr3.4:88232258-88232277 MS.gene41623:intron 50.0%
CAATCAGCCCAACACTTGCA+CGG + chr3.4:88231617-88231636 None:intergenic 50.0%
CACTGCAGCCTCCGTTTAAT+TGG - chr3.4:88230512-88230531 MS.gene41623:CDS 50.0%
CCAATTCTTCTGGGTGAAGC+TGG - chr3.4:88231708-88231727 MS.gene41623:CDS 50.0%
CCAGCTTCACCCAGAAGAAT+TGG + chr3.4:88231711-88231730 None:intergenic 50.0%
CCAGGTTATGTGTCCAATGG+GGG - chr3.4:88231397-88231416 MS.gene41623:CDS 50.0%
CGACAAGTTTCGGCTGAGAT+TGG - chr3.4:88230716-88230735 MS.gene41623:intron 50.0%
CGACAGCTAAAACGGAACGA+AGG - chr3.4:88233554-88233573 MS.gene41623:CDS 50.0%
CGTGTCATGTCCTTGGATGT+AGG - chr3.4:88231952-88231971 MS.gene41623:CDS 50.0%
CTCCACTCCATGGAACCAAA+AGG - chr3.4:88232636-88232655 MS.gene41623:intron 50.0%
CTCGGCTCATCAATCCAAAC+AGG + chr3.4:88233245-88233264 None:intergenic 50.0%
GAACTGGAATTCCTGACCAG+AGG + chr3.4:88234232-88234251 None:intergenic 50.0%
GAGCCAGGTTATGTGTCCAA+TGG - chr3.4:88231394-88231413 MS.gene41623:CDS 50.0%
GCAAGCAATGCTTCAGCCAA+TGG + chr3.4:88235812-88235831 None:intergenic 50.0%
GCCAGGTTATGTGTCCAATG+GGG - chr3.4:88231396-88231415 MS.gene41623:CDS 50.0%
GGAACGTGTGATTGGACAAG+AGG - chr3.4:88234307-88234326 MS.gene41623:intron 50.0%
TAGCAACAGTTGCTTCCCTC+TGG - chr3.4:88234213-88234232 MS.gene41623:intron 50.0%
TCATCCCCTTGAAAAGCCAC+AGG - chr3.4:88235325-88235344 MS.gene41623:intron 50.0%
TCTATCCTGTTGAGCAGCTC+TGG + chr3.4:88235290-88235309 None:intergenic 50.0%
TGCTGCTGCAAGACGTGAAA+AGG - chr3.4:88235660-88235679 MS.gene41623:CDS 50.0%
TGTTGATGCCTCTCTGCTGT+TGG - chr3.4:88232857-88232876 MS.gene41623:intron 50.0%
TTCTGGGTGAAGCTGGAGTT+GGG - chr3.4:88231715-88231734 MS.gene41623:CDS 50.0%
TTGGATTGATGAGCCGAGTG+AGG - chr3.4:88233247-88233266 MS.gene41623:intron 50.0%
! AGAACCCTTATTTCCCCTCC+CGG + chr3.4:88232206-88232225 None:intergenic 50.0%
! AGGGGTCAGTTTCAGGTGAT+TGG - chr3.4:88232265-88232284 MS.gene41623:intron 50.0%
! CAGTTTTCCCAACGCCAGTT+GGG + chr3.4:88234424-88234443 None:intergenic 50.0%
! CATATGGTGCTAGACCTCTC+AGG - chr3.4:88235759-88235778 MS.gene41623:CDS 50.0%
! CCCCCAGGTTATGTTGGTTA+TGG - chr3.4:88234719-88234738 MS.gene41623:intron 50.0%
! CTACACTTTGGAGAGGCCAT+TGG - chr3.4:88230671-88230690 MS.gene41623:intron 50.0%
! GCATCGGCAAACCTGAGAAT+CGG + chr3.4:88234873-88234892 None:intergenic 50.0%
! GCCACAGGTTCGTTGAGTTT+TGG - chr3.4:88235340-88235359 MS.gene41623:intron 50.0%
! GGGTCTAGTGCCATTGCTAA+GGG - chr3.4:88235164-88235183 MS.gene41623:intron 50.0%
! TCAGTTTTCCCAACGCCAGT+TGG + chr3.4:88234425-88234444 None:intergenic 50.0%
!! CATCGGTTTACACTCCTTGC+AGG - chr3.4:88232127-88232146 MS.gene41623:intron 50.0%
!! CGAACCTGTGGCTTTTCAAG+GGG + chr3.4:88235332-88235351 None:intergenic 50.0%
!! GCCCCGAGGAATTGATTTTG+AGG - chr3.4:88235688-88235707 MS.gene41623:CDS 50.0%
!! TGGCCATCTTACCGATTCTC+AGG - chr3.4:88234859-88234878 MS.gene41623:intron 50.0%
AAGGGTCGACACAGCTCCAT+AGG - chr3.4:88235182-88235201 MS.gene41623:intron 55.0%
ACAGTTGCTTCCCTCTGGTC+AGG - chr3.4:88234218-88234237 MS.gene41623:intron 55.0%
AGAGATCTCGAGTCGGCCTT+CGG - chr3.4:88234360-88234379 MS.gene41623:CDS 55.0%
AGGCGTGTTTGTTTCCGCGT+TGG - chr3.4:88230620-88230639 MS.gene41623:CDS 55.0%
ATGGCTGGGGCAAAAGAGAG+AGG - chr3.4:88231982-88232001 MS.gene41623:CDS 55.0%
CACGGCGGTTTCAACCTGTT+TGG - chr3.4:88233228-88233247 MS.gene41623:intron 55.0%
CCACAGCTGCCAACTGATCT+GGG + chr3.4:88231333-88231352 None:intergenic 55.0%
CCCCCATTGGACACATAACC+TGG + chr3.4:88231400-88231419 None:intergenic 55.0%
CGGGTCAAACCCAGATCAGT+TGG - chr3.4:88231321-88231340 MS.gene41623:CDS 55.0%
CGTGATGCTAACGCGCCATT+TGG + chr3.4:88230289-88230308 None:intergenic 55.0%
CTTCTGGGTGAAGCTGGAGT+TGG - chr3.4:88231714-88231733 MS.gene41623:CDS 55.0%
GAACTCCCCCTTGCATACTC+TGG - chr3.4:88230930-88230949 MS.gene41623:CDS 55.0%
GACAACCGGGAGGGGAAATA+AGG - chr3.4:88232198-88232217 MS.gene41623:intron 55.0%
GCTAGAGATGGTAGAGAGCC+AGG - chr3.4:88231379-88231398 MS.gene41623:CDS 55.0%
GGACCGATACTTCACGTGAC+CGG + chr3.4:88230320-88230339 None:intergenic 55.0%
GGATCTCCCCCAGGTTATGT+TGG - chr3.4:88234713-88234732 MS.gene41623:intron 55.0%
GGGAGGGGAAATAAGGGTTC+TGG - chr3.4:88232205-88232224 MS.gene41623:intron 55.0%
TCAATCAGGGACAACCGGGA+GGG - chr3.4:88232189-88232208 MS.gene41623:intron 55.0%
TCACTGCCCGTGCAAGTGTT+GGG - chr3.4:88231607-88231626 MS.gene41623:intron 55.0%
TCAGCAGTGAGCTGCTGAAC+TGG + chr3.4:88234248-88234267 None:intergenic 55.0%
TTCAATCAGGGACAACCGGG+AGG - chr3.4:88232188-88232207 MS.gene41623:intron 55.0%
TTCGTCCAGAGCTGCTCAAC+AGG - chr3.4:88235282-88235301 MS.gene41623:intron 55.0%
! AGGATAAGGCTTTGGCACGG+CGG - chr3.4:88233213-88233232 MS.gene41623:intron 55.0%
! GCTGTGTCGACCCTTAGCAA+TGG + chr3.4:88235177-88235196 None:intergenic 55.0%
! GGGGTCTAGTGCCATTGCTA+AGG - chr3.4:88235163-88235182 MS.gene41623:intron 55.0%
CAATCAGGGACAACCGGGAG+GGG - chr3.4:88232190-88232209 MS.gene41623:intron 60.0%
CCCAGATCAGTTGGCAGCTG+TGG - chr3.4:88231330-88231349 MS.gene41623:CDS 60.0%
CTCACTGCCCGTGCAAGTGT+TGG - chr3.4:88231606-88231625 MS.gene41623:intron 60.0%
GAGATCTCGAGTCGGCCTTC+GGG - chr3.4:88234361-88234380 MS.gene41623:CDS 60.0%
GCCACAGCTGCCAACTGATC+TGG + chr3.4:88231334-88231353 None:intergenic 60.0%
GTGAAAAGGACCATGCCCCG+AGG - chr3.4:88235674-88235693 MS.gene41623:CDS 60.0%
TCTGTGGCCCAACTGGCGTT+GGG - chr3.4:88234414-88234433 MS.gene41623:CDS 60.0%
TTCTGTGGCCCAACTGGCGT+TGG - chr3.4:88234413-88234432 MS.gene41623:CDS 60.0%
!! TCACAAAGGCGCTCTGGTGC+AGG - chr3.4:88231436-88231455 MS.gene41623:CDS 60.0%
TGGGTCTACCGGGATCCCGA+AGG + chr3.4:88234379-88234398 None:intergenic 65.0%
CGAGTCGGCCTTCGGGATCC+CGG - chr3.4:88234368-88234387 MS.gene41623:CDS 70.0%


Chromosome Type Strat End Strand Name
chr3.4 gene 88229815 88235946 88229815 ID=MS.gene41623
chr3.4 mRNA 88229815 88235946 88229815 ID=MS.gene41623.t1;Parent=MS.gene41623
chr3.4 exon 88235636 88235946 88235636 ID=MS.gene41623.t1.exon1;Parent=MS.gene41623.t1
chr3.4 CDS 88235636 88235946 88235636 ID=cds.MS.gene41623.t1;Parent=MS.gene41623.t1
chr3.4 exon 88234310 88234443 88234310 ID=MS.gene41623.t1.exon2;Parent=MS.gene41623.t1
chr3.4 CDS 88234310 88234443 88234310 ID=cds.MS.gene41623.t1;Parent=MS.gene41623.t1
chr3.4 exon 88233958 88234190 88233958 ID=MS.gene41623.t1.exon3;Parent=MS.gene41623.t1
chr3.4 CDS 88233958 88234190 88233958 ID=cds.MS.gene41623.t1;Parent=MS.gene41623.t1
chr3.4 exon 88233707 88233815 88233707 ID=MS.gene41623.t1.exon4;Parent=MS.gene41623.t1
chr3.4 CDS 88233707 88233815 88233707 ID=cds.MS.gene41623.t1;Parent=MS.gene41623.t1
chr3.4 exon 88233482 88233612 88233482 ID=MS.gene41623.t1.exon5;Parent=MS.gene41623.t1
chr3.4 CDS 88233482 88233612 88233482 ID=cds.MS.gene41623.t1;Parent=MS.gene41623.t1
chr3.4 exon 88232493 88232594 88232493 ID=MS.gene41623.t1.exon6;Parent=MS.gene41623.t1
chr3.4 CDS 88232493 88232594 88232493 ID=cds.MS.gene41623.t1;Parent=MS.gene41623.t1
chr3.4 exon 88231846 88232127 88231846 ID=MS.gene41623.t1.exon7;Parent=MS.gene41623.t1
chr3.4 CDS 88231846 88232127 88231846 ID=cds.MS.gene41623.t1;Parent=MS.gene41623.t1
chr3.4 exon 88231667 88231767 88231667 ID=MS.gene41623.t1.exon8;Parent=MS.gene41623.t1
chr3.4 CDS 88231667 88231767 88231667 ID=cds.MS.gene41623.t1;Parent=MS.gene41623.t1
chr3.4 exon 88231280 88231574 88231280 ID=MS.gene41623.t1.exon9;Parent=MS.gene41623.t1
chr3.4 CDS 88231280 88231574 88231280 ID=cds.MS.gene41623.t1;Parent=MS.gene41623.t1
chr3.4 exon 88230881 88231114 88230881 ID=MS.gene41623.t1.exon10;Parent=MS.gene41623.t1
chr3.4 CDS 88230881 88231114 88230881 ID=cds.MS.gene41623.t1;Parent=MS.gene41623.t1
chr3.4 exon 88230415 88230648 88230415 ID=MS.gene41623.t1.exon11;Parent=MS.gene41623.t1
chr3.4 CDS 88230415 88230648 88230415 ID=cds.MS.gene41623.t1;Parent=MS.gene41623.t1
chr3.4 exon 88229815 88230120 88229815 ID=MS.gene41623.t1.exon12;Parent=MS.gene41623.t1
chr3.4 CDS 88229815 88230120 88229815 ID=cds.MS.gene41623.t1;Parent=MS.gene41623.t1
Gene Sequence

>MS.gene41623

ATGCTTGGTCTCATAGCTGAAGCTGAAGAGACAAATCGTTCTCAAAACGGTTTTCTTGATTCTGGTGTAGTCACTCTTGAGAAAGCTCGTGATGCTGTTCCTCATCTCAATGATTCAACTAACTACGTTGATGATAATGGAGTGTATGTGTATCAAGATCGACCTGTTCCGTTTTCTTTTGGTACTAAACGTGTTTTTGAAGCTGCTGTTGAGTATTCAAGATCTCTGAACCATAATTTTGTTGATCCTGAACATATTTTCGTTGCTTTGATGAAAGTTGATGATGGAAGTTCTGCTAGAATTCTTTATAGGTATCAAATCTCTTTCTTTATTCAATACTTATAATATATTTCCATTTGGTATTTGGAGTATTGTTGTTTTTGGCTCATTTCTATAATTATATGCATATGCATATGCATTTTAGTGTATACTTTCTTGTTTTGAATTATTTCCTAAAGAAACTTATTTGAACCAAATGGCGCGTTAGCATCACGTGTCAACACCGGTCACGTGAAGTATCGGTCCTTAGTTGTTGCAGGTTCGATACTTGACATCCAATCAATGATAACCAAGAAACAAATGTTGGCTATTTTAAGAAAATTAATTTATTTGGTAATGAACTTTTTAAGAATAATGCTGGATGTCAAGAAACTTGCTTCGTAAATCTGTCACGATGTCAGTTATATAAAGTGTTACACACTGCAGCCTCCGTTTAATTGGTTGTCAGACTATTTGTGAAGCTTTAATGACTAAATCAGTCGTGCTAAATTGCATCGCTGTTATGACAATTTAAATTCAACTTTAAAGGCGTGTTTGTTTCCGCGTTGGTTTCACTTTGATCGCATAGTGACAGAAGCTACACTTTGGAGAGGCCATTGGCTGTGTTTCCAAATATGTACTTCGACAAGTTTCGGCTGAGATTGGTAATTGGGATTTGGACTCTGGATTATAGCCAGACAATATGACATAGTTCATGGCACATAGATGATCTTCAGTTGTTGCTCTAGACTTAATACATCAACTGTTTTGTGCTTAAAAACTAAATTGAAGATTAATGAGTTATCCAAAATACCATTTGTCTTACGATTTTAGATGATCGATTTTGACTGAAGTTCGAACTCCCCCTTGCATACTCTGGTCAAAATCAATCTCAATTTGTCGGTGAAACAATTTTTTGGGCTACCCGAAAAGGCTGCTGTCATATCCTGGTTTATAAGTCCTTTGAGTTGCATAACTAGTTTGAAAAATATTCTTTGGGGTAAAATTTTAAGGAAATTCAGTTTTATCAAGTTTTTGTAGATGCATTAGCTTTTTAAAGAGTGTGGAAATTTGCTTAATAGCAAATGCCAATATTTGTTTTTCTTTTGTTTTGTGGCAATAATGATCTGGAGCTATATCATCGTGGCTTGTGATTGGACAATTGACTGTGTGCAAGATCTATCATTAAATTATGTGTGTAGCTATAATTTTCCATTAATGTTGCTAGTATGCAAATGATTTCAGACTCGGGTCAAACCCAGATCAGTTGGCAGCTGTGGCATATTCAAGACTACAAAAAGAGCTGGCTAGAGATGGTAGAGAGCCAGGTTATGTGTCCAATGGGGGACACAACAAATCTATATCACAAAGGCGCTCTGGTGCAGGATCTGCCGCTAAAACAAAAGGCAAGAAAATATAAAGTTTGTTGTTTTATGATTTGATTTTGATGGTTGAAGGCAGAGATAAGTTTTTCTCATGTTCATTCTCTGGTTGTCAGATAAAAAGAGTGCTCTATCACAATTCTGCGTGGATCTCACTGCCCGTGCAAGTGTTGGGCTGATTGATCCAGTTATTGGCCGAGAAGTTGAAGTTCAAAGAATTATTCAAATACTATGCCGAAAGACAAAAAGCAATCCAATTCTTCTGGGTGAAGCTGGAGTTGGGAAAACAGCTATTGTAGAGGGACTGGCAATTCTTATTTCTCGGGCAGAAGTTGCTCCTTTTCTATTGGTGTGTCTATCAACAAATGATTAATGTTTCTAAAGTTTTTCTTTTCTTGTGTACCCTTCTGTAATTGCACGTGCCTTAATTAATATGTTTCTATCTACTTGGAGTGCATTGTAATTTCACTTTCTAACTTGTGTCTACACAGACAAAACGTGTCATGTCCTTGGATGTAGGACTATTAATGGCTGGGGCAAAAGAGAGAGGAGAGCTAGAGGACCGCGTTACAAAATTAATAAAAGATATAATAGAGTCAGGTGAATACATTTTAGCAAAAATATTATAAGAGTTGTGTTAATATATGTGTGGCACACAGGATTGTTTTAGCTCATCGGTTTACACTCCTTGCAGGTGATGTCATTCTTTTCATTGACGAAGTTCACACACTTGTTCAATCAGGGACAACCGGGAGGGGAAATAAGGGTTCTGGCTTTGACATTGCTAATTTGCTTAAACCTTCACTTGGAAGGGGTCAGTTTCAGGTGATTGGTTGCCCTGTAATCTCATCTGCTAGTTTCCTTTGTTCCAAGTGATACTTGAATATTTATGTATTTCAATTTGAAGCCATCAAATAAACAATTGCTAGTAACGTATAAGATTAAGGTTAGAGGAAAAAATATATGATAACCAGTTACAGTTACTACACTTCTGTACCCAACATTTTTCAAAGTAACTGTACTAAACAAGATTAGCATTTAACATCTGGAAAGTAGGAAGGTTGAGATTATTCTAGAAGTTGTCTTTATGAAATACTGGGAGGCTATAGTTCTTGTTAATAGACTCACTGCTTAGATGGAAGAGATATGAGTGAGTGTTAACTGGTAAATATCTTGCATATCTCCACTCCATGGAACCAAAAGGTTACATGTACTATAAAAATTATTTTGCAAACATTGCAATCTGTTGCTGAAATGAGGGCAAATTTGTATGTTCGGTGTTCGTGAGTCTCTTTTCAATTTCTATAAAGCTAGTTCCATATATTTTCATGTTTAAGGCTGTGAATACTGGAATCAGTTATATTCAACAACGCTAAGGCATGATATTCAATCGTATTTTTTCTGTTGATGCCTCTCTGCTGTTGGAATTTTATTTTATTTTTTTTGTAATTTTAATTGGGAGGGATTTGTTGTTTGGAGAGAGTAGTTTTGGACTTTGAATTCTCTGGCTGACACAACTGTGTAAGTCATAATTGTTCTTTCCTCTGATGAATTTTTCTTGAATAGTTGGTTCAATTATATTATGCAGTCAGAATGTTCTTACAGTGATCATTTTTGTATAAGATGGGATCATCATTTTTACTTGAGCATTGTAATAAAATATGCACGCACACCATAACTTGTCACTATGAATAACATTTCCGTCTGTGCAGTGTATTGCATCTACCACTATTGATGAATACAGGCTTCATTTTGAAAAGGATAAGGCTTTGGCACGGCGGTTTCAACCTGTTTGGATTGATGAGCCGAGTGAGGTTGCACTTTATATTCATGTCTATACTGTTCCAAGTGACTCCCTCTTCTCCTTTGTAACTGTCGCTTTTGTAGAAAAAAATTGTTTCTATTTATTTGTACGTTTTTAAAGTTCAATGAGACATTAACTATTGTTTCGCAATAACGCCCTTAATTATTTATTGCAAAGAGAGAAATAGATGGAATGAGATGTAATAAATAGTTAAGATTGTTATAGAAAAAAGGTATAATTTTATCAAATGTACCAAGTTTATTGGTTTGTTTGGTACGTGTAAATAACCTTATAGCGACAGCTAAAACGGAACGAAGGGAGTACCATTTTAATCATAATTTGATCTCTTAATGAACTGTGTGTTGTTGTGTATAGGATGATGCAATTAAGATACTTATGGGTGTACGTGAGAAATATGAAGCACACCACAAGTGCAGATATACAGAAGATGCCATAAAGGCTGCAGTTCATTTGTCAGCAAGATACATAGTTGATAGGTATCTACCTGATAAAGCTATTGACCTCATTGATGAAGCAGGAAGTAAAGCTTCTATTGAAGCCTTTAAGATGAAAAAAGAACACGATTATTGCATACTCTCTAAAAGCCCGGATGATTATTGGAGAGAAATTAGAACTGTTCAGTCCACGCTTAAAATGGTAATGGCATGGCTTGCTGTATTCCGATGTTCTTTGCATGAGCTGCTTACAGTTTAAGTTGACATTTCTTACTCTCAGGTGCAGGAGAGCATGCTTAAATATTATGGTGCATCTGGCATTGAGGATACCAGTGAACTCATACTTGACTCATATTTAACTTCTGCAGCATTTGATAATGAGTATGTTGGTGATACCCAAAGCAGAGTTCTTTCTTTTGTGCATATCTATCTAGATTTGGTTTTTGAGTGGCTGACATGTTATTGCGTTTTAGGTGTATAGAAGTTAGGCCTGATCATATAGCAACAGTTGCTTCCCTCTGGTCAGGAATTCCAGTTCAGCAGCTCACTGCTGATGAAAGAAGTCTTCTGTTAGATCTGGATAATAAACTAAGGGAACGTGTGATTGGACAAGAGGAGGCTGTTTCTGCCATTTCTAGATCTGTGAAGAGATCTCGAGTCGGCCTTCGGGATCCCGGTAGACCCATAGCAACTTTACTATTCTGTGGCCCAACTGGCGTTGGGAAAACTGAACTAGCAAAGTCTTTGGCTGCATGCTATTTTGGATCGGTAAGTATTCACACAAGGTGTGTTTTTTTGGCATTAATAATGAGGACATTCTTTATTTTTGTTTTTCCTCTTTTCGATGTTCTGAAATGATAAATTTGCAATCTGTACATGTCACATCGATTGGTTCGTCTGTTTATATTTTTGCCTTTCATACTATCATTTCAGGAAACGGACATGATAAGGTTAGACATGAGTGAATATATGGAACGCCATTCAGTGAGCAAGTTATTAGGATCTCCCCCAGGTTATGTTGGTTATGGAGAAGGGGGCATTTTAACCGAAGCTATTAGAAGAAAACCATTTACTGTGGTTTTGTTTGATGAAATAGAAAAAGCTCATCCAGATATATTTAACATTCTTCTTCAATTAATGGAAGATGGCCATCTTACCGATTCTCAGGTTTGCCGATGCTGATGTGACTCTTAATTTACTAGGACTTCAATAACCCTTTAAACATGAAACTTTCTCTTGGCATTTCTATATCTTCCTTTACGGCTTCTATGCAAGTAAAAACGATCACTTGTGTGATTCATAAAAACAAGCACTTGTAGTTGTATCAATAGAATATGAAATTAACACTACTAGTGCCCTAAATTTTTATGTTTATTGTTTGAAAAACTGGTTCTAATAGGGTCGAAGAGTTTCATTTAAAAATGCATTGGTAGTGATGACTTCAAATGTGGGGTCTAGTGCCATTGCTAAGGGTCGACACAGCTCCATAGGTTTCTTCATTTCAGATGACAAACCAACATCATATAATGGATTGAAATCGATGGTAATTGAAGAACTGAGGACATATTTTCGTCCAGAGCTGCTCAACAGGATAGATGAAGTGGTGGTGTTTCATCCCCTTGAAAAGCCACAGGTTCGTTGAGTTTTGGTTCTGATTTAGTTTAATGATTTAGCTCGCCGATGATATTCACTTTGGAGGCTCTTACACAATATTCTATTACTATTTATTTATTATTTAGTCATTTTTGTTTGGCAATAATATGATTTTCAGAAACCGTTTTAAGCAGTTAAATTTAAATACTGGTGTTTTTAATAAAAAAATAAAAATAAGCGGTGCCAAGTTTTTTTATGTGTATGCTTTTTATTTTATTGATGCTATTTGTCAAAAAAAGAAAATATTGATGTTATTGCTATACTTTTATCACAGTTGCTCCAAATATTTGATTTGCTGCTGCAAGACGTGAAAAGGACCATGCCCCGAGGAATTGATTTTGAGGTGTCTGAATCAGTCAAGGACCTTGTCTGTAAGGAAGGCTATGACCCAACATATGGTGCTAGACCTCTCAGGAGAGCCATTGTAAACTTAATTGCAAACCCATTGGCTGAAGCATTGCTTGCTGAAAAGTGCAAGGAAGGTGACACTGTCTTCATTGATTTGGATGCCAATGGTAACACCCTTGTTATAAATCAGCTTGATCAGACAGTCAACTTATCCGACACAAGTCACCCTTGA
Protein sequence

>MS.gene41623.t1

MLGLIAEAEETNRSQNGFLDSGVVTLEKARDAVPHLNDSTNYVDDNGVYVYQDRPVPFSFGTKRVFEAAVEYSRSLNHNFVDPEHIFVALMKVDDGSSARILYRLGSNPDQLAAVAYSRLQKELARDGREPGYVSNGGHNKSISQRRSDKKSALSQFCVDLTARASVGLIDPVIGREVEVQRIIQILCRKTKSNPILLGEAGVGKTAIVEGLAILISRAEVAPFLLTKRVMSLDVGLLMAGAKERGELEDRVTKLIKDIIESGDVILFIDEVHTLVQSGTTGRGNKGSGFDIANLLKPSLGRGQFQCIASTTIDEYRLHFEKDKALARRFQPVWIDEPSEDDAIKILMGVREKYEAHHKCRYTEDAIKAAVHLSARYIVDRYLPDKAIDLIDEAGSKASIEAFKMKKEHDYCILSKSPDDYWREIRTVQSTLKMVQESMLKYYGASGIEDTSELILDSYLTSAAFDNECIEVRPDHIATVASLWSGIPVQQLTADERSLLLDLDNKLRERVIGQEEAVSAISRSVKRSRVGLRDPGRPIATLLFCGPTGVGKTELAKSLAACYFGSETDMIRLDMSEYMERHSVSKLLGSPPGYVGYGEGGILTEAIRRKPFTVVLFDEIEKAHPDIFNILLQLMEDGHLTDSQGRRVSFKNALVVMTSNVGSSAIAKGRHSSIGFFISDDKPTSYNGLKSMVIEELRTYFRPELLNRIDEVVVFHPLEKPQLLQIFDLLLQDVKRTMPRGIDFEVSESVKDLVCKEGYDPTYGARPLRRAIVNLIANPLAEALLAEKCKEGDTVFIDLDANGNTLVINQLDQTVNLSDTSHP