Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene42656.t1 | XP_003603307.1 | 99.3 | 980 | 7 | 0 | 1 | 980 | 1 | 980 | 0.00E+00 | 1762.7 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene42656.t1 | Q8VYJ7 | 74.9 | 972 | 225 | 4 | 1 | 970 | 1 | 955 | 0.0e+00 | 1335.1 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene42656.t1 | G7J9V8 | 99.3 | 980 | 7 | 0 | 1 | 980 | 1 | 980 | 0.0e+00 | 1762.7 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene015097 | MS.gene42656 | PPI |
| MS.gene42656 | MS.gene06260 | PPI |
| MS.gene013215 | MS.gene42656 | PPI |
| MS.gene42656 | MS.gene45242 | PPI |
| MS.gene013187 | MS.gene42656 | PPI |
| MS.gene033069 | MS.gene42656 | PPI |
| MS.gene06302 | MS.gene42656 | PPI |
| MS.gene42656 | MS.gene013434 | PPI |
| MS.gene057532 | MS.gene42656 | PPI |
| MS.gene32894 | MS.gene42656 | PPI |
| MS.gene42656 | MS.gene071279 | PPI |
| MS.gene06534 | MS.gene42656 | PPI |
| MS.gene063483 | MS.gene42656 | PPI |
| MS.gene97588 | MS.gene42656 | PPI |
| MS.gene049405 | MS.gene42656 | PPI |
| MS.gene42656 | MS.gene012897 | PPI |
| MS.gene055539 | MS.gene42656 | PPI |
| MS.gene030500 | MS.gene42656 | PPI |
| MS.gene42656 | MS.gene021811 | PPI |
| MS.gene049185 | MS.gene42656 | PPI |
| MS.gene42656 | MS.gene031135 | PPI |
| MS.gene41649 | MS.gene42656 | PPI |
| MS.gene42656 | MS.gene86083 | PPI |
| MS.gene42656 | MS.gene000515 | PPI |
| MS.gene06778 | MS.gene42656 | PPI |
| MS.gene42656 | MS.gene044439 | PPI |
| MS.gene41623 | MS.gene42656 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene42656.t1 | MTR_3g106160 | 99.184 | 980 | 8 | 0 | 1 | 980 | 1 | 980 | 0.0 | 1993 |
| MS.gene42656.t1 | MTR_7g012820 | 72.881 | 885 | 239 | 1 | 85 | 969 | 77 | 960 | 0.0 | 1364 |
| MS.gene42656.t1 | MTR_7g012820 | 73.182 | 880 | 235 | 1 | 90 | 969 | 11 | 889 | 0.0 | 1360 |
| MS.gene42656.t1 | MTR_6g013660 | 71.445 | 886 | 246 | 2 | 88 | 970 | 76 | 957 | 0.0 | 1338 |
| MS.gene42656.t1 | MTR_4g109450 | 48.996 | 896 | 427 | 12 | 95 | 977 | 5 | 883 | 0.0 | 821 |
| MS.gene42656.t1 | MTR_4g109450 | 51.090 | 826 | 379 | 10 | 95 | 910 | 5 | 815 | 0.0 | 795 |
| MS.gene42656.t1 | MTR_7g028970 | 48.216 | 869 | 417 | 12 | 123 | 977 | 33 | 882 | 0.0 | 777 |
| MS.gene42656.t1 | MTR_8g100040 | 42.062 | 970 | 444 | 16 | 26 | 949 | 5 | 902 | 0.0 | 702 |
| MS.gene42656.t1 | MTR_3g498725 | 43.646 | 905 | 407 | 15 | 75 | 949 | 67 | 898 | 0.0 | 702 |
| MS.gene42656.t1 | MTR_3g102830 | 44.151 | 872 | 401 | 12 | 96 | 949 | 100 | 903 | 0.0 | 683 |
| MS.gene42656.t1 | MTR_3g098310 | 43.680 | 712 | 325 | 11 | 250 | 949 | 297 | 944 | 0.0 | 573 |
| MS.gene42656.t1 | MTR_3g098310 | 44.865 | 555 | 236 | 9 | 250 | 797 | 297 | 788 | 1.88e-148 | 460 |
| MS.gene42656.t1 | MTR_2g099075 | 40.347 | 461 | 258 | 5 | 489 | 948 | 4 | 448 | 1.05e-101 | 327 |
| MS.gene42656.t1 | MTR_3g461000 | 46.462 | 325 | 170 | 1 | 625 | 949 | 428 | 748 | 2.27e-98 | 328 |
| MS.gene42656.t1 | MTR_3g461000 | 37.621 | 412 | 239 | 7 | 96 | 493 | 5 | 412 | 3.80e-79 | 275 |
| MS.gene42656.t1 | MTR_2g006950 | 42.287 | 376 | 194 | 7 | 551 | 925 | 2 | 355 | 1.39e-83 | 282 |
| MS.gene42656.t1 | MTR_2g006950 | 34.348 | 230 | 119 | 7 | 731 | 954 | 350 | 553 | 4.69e-30 | 127 |
| MS.gene42656.t1 | MTR_6g048860 | 54.839 | 155 | 65 | 2 | 231 | 381 | 112 | 265 | 2.61e-46 | 170 |
| MS.gene42656.t1 | MTR_1g076440 | 59.140 | 93 | 38 | 0 | 713 | 805 | 150 | 242 | 5.18e-31 | 124 |
| MS.gene42656.t1 | MTR_3g029990 | 84.058 | 69 | 10 | 1 | 111 | 179 | 501 | 568 | 7.09e-27 | 117 |
| MS.gene42656.t1 | MTR_3g029990 | 84.058 | 69 | 10 | 1 | 111 | 179 | 501 | 568 | 7.84e-27 | 117 |
| MS.gene42656.t1 | MTR_1614s0010 | 39.306 | 173 | 93 | 4 | 728 | 899 | 1 | 162 | 9.62e-27 | 108 |
| MS.gene42656.t1 | MTR_5g098360 | 41.912 | 136 | 68 | 3 | 617 | 742 | 33 | 167 | 2.05e-23 | 98.6 |
| MS.gene42656.t1 | MTR_6g013600 | 50.000 | 86 | 43 | 0 | 878 | 963 | 11 | 96 | 3.35e-22 | 92.4 |
| MS.gene42656.t1 | MTR_2g029230 | 40.777 | 103 | 55 | 2 | 212 | 314 | 38 | 134 | 1.34e-16 | 77.8 |
| MS.gene42656.t1 | MTR_7g096480 | 36.719 | 128 | 48 | 2 | 620 | 747 | 1 | 95 | 7.32e-15 | 75.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene42656.t1 | AT2G25140 | 80.694 | 922 | 164 | 4 | 56 | 970 | 41 | 955 | 0.0 | 1520 |
| MS.gene42656.t1 | AT5G15450 | 72.085 | 892 | 245 | 2 | 85 | 975 | 71 | 959 | 0.0 | 1349 |
| MS.gene42656.t1 | AT1G74310 | 50.060 | 835 | 391 | 8 | 123 | 948 | 33 | 850 | 0.0 | 816 |
| MS.gene42656.t1 | AT1G74310 | 50.941 | 797 | 365 | 8 | 123 | 910 | 33 | 812 | 0.0 | 790 |
| MS.gene42656.t1 | AT3G48870 | 44.661 | 871 | 398 | 13 | 96 | 949 | 87 | 890 | 0.0 | 709 |
| MS.gene42656.t1 | AT3G48870 | 44.432 | 871 | 400 | 12 | 96 | 949 | 118 | 921 | 0.0 | 707 |
| MS.gene42656.t1 | AT3G48870 | 44.432 | 871 | 400 | 12 | 96 | 949 | 118 | 921 | 0.0 | 707 |
| MS.gene42656.t1 | AT3G48870 | 44.432 | 871 | 400 | 12 | 96 | 949 | 118 | 921 | 0.0 | 707 |
| MS.gene42656.t1 | AT5G50920 | 44.598 | 870 | 399 | 10 | 96 | 949 | 98 | 900 | 0.0 | 707 |
| MS.gene42656.t1 | AT4G14670 | 52.120 | 566 | 249 | 6 | 188 | 750 | 76 | 622 | 0.0 | 550 |
| MS.gene42656.t1 | AT5G51070 | 49.408 | 338 | 163 | 2 | 629 | 958 | 594 | 931 | 8.60e-105 | 349 |
| MS.gene42656.t1 | AT5G51070 | 38.514 | 444 | 234 | 9 | 96 | 501 | 83 | 525 | 9.32e-80 | 280 |
| MS.gene42656.t1 | AT3G45450 | 35.211 | 355 | 169 | 9 | 96 | 439 | 5 | 309 | 5.66e-46 | 169 |
| MS.gene42656.t1 | AT4G30350 | 23.826 | 575 | 350 | 23 | 270 | 827 | 233 | 736 | 8.88e-13 | 73.2 |
Find 232 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTTAATAATCAATTTATTTA+AGG | 0.054559 | 3.1:+84215956 | None:intergenic |
| TAGAACAGGTTCTTCATAAA+AGG | 0.146469 | 3.1:-84217773 | MS.gene42656:CDS |
| AAGAATAATCCAGTTATTAT+TGG | 0.204921 | 3.1:-84221354 | MS.gene42656:CDS |
| TTCTGTGTTAAACAAGTAAT+TGG | 0.212057 | 3.1:+84217602 | None:intergenic |
| GTAGTTGATCTCCCTTGATA+TGG | 0.220694 | 3.1:-84219710 | MS.gene42656:intron |
| GAAAAGATTGTCCAGAGTTT+TGG | 0.226248 | 3.1:+84217901 | None:intergenic |
| TCGTTCTTCTTGATAATATC+TGG | 0.227927 | 3.1:+84221376 | None:intergenic |
| GAAGAAGCTGTTAAACTTCT+TGG | 0.247889 | 3.1:-84216143 | MS.gene42656:CDS |
| ATCCAATTCTGTTGGTTTAG+AGG | 0.254740 | 3.1:+84218349 | None:intergenic |
| AAACTTGCAATTGGCCTGTT+TGG | 0.271021 | 3.1:+84217678 | None:intergenic |
| TAATATCTTGTTACAATTGT+TGG | 0.276250 | 3.1:-84217397 | MS.gene42656:CDS |
| ATGGCTTGGGAGGGTGTTAT+TGG | 0.301773 | 3.1:-84222553 | MS.gene42656:CDS |
| AATCGATATGAGTGAGTATA+TGG | 0.307400 | 3.1:-84217565 | MS.gene42656:CDS |
| GATATGGGTTCATTGCTTGC+TGG | 0.320229 | 3.1:-84219694 | MS.gene42656:CDS |
| GACACTTCTGGTCCTGTAAT+TGG | 0.320317 | 3.1:-84222273 | MS.gene42656:CDS |
| CAGGTTACAGGTGACACTTC+TGG | 0.328835 | 3.1:-84222285 | MS.gene42656:CDS |
| ACTGGTCTTGCCCCAAAGTT+AGG | 0.330682 | 3.1:+84216104 | None:intergenic |
| TTAATAATCAATTTATTTAA+GGG | 0.336037 | 3.1:+84215957 | None:intergenic |
| AACTTGCAATTGGCCTGTTT+GGG | 0.342638 | 3.1:+84217679 | None:intergenic |
| AGAACGAGTGAGAGGGGTTC+TGG | 0.355530 | 3.1:+84223275 | None:intergenic |
| CCGATGCAATTCGCCGTTCA+AGG | 0.356253 | 3.1:-84217716 | MS.gene42656:CDS |
| TTTCATTCAGATAAGAGGTT+TGG | 0.356993 | 3.1:-84222159 | MS.gene42656:CDS |
| TTCATTCAGATAAGAGGTTT+GGG | 0.357705 | 3.1:-84222158 | MS.gene42656:CDS |
| AAGCAAAATAGTGGAGCTTC+AGG | 0.360112 | 3.1:-84217127 | MS.gene42656:intron |
| TTGATGCTGTAACTTCCTTC+AGG | 0.360377 | 3.1:+84219629 | None:intergenic |
| TGTCATCTTGTGTACTACTT+AGG | 0.361955 | 3.1:+84217274 | None:intergenic |
| AAATTGCAATGGGAGTTCTA+AGG | 0.365326 | 3.1:-84216049 | MS.gene42656:CDS |
| CCGCTCCGCCGGAGCTTCTC+AGG | 0.368661 | 3.1:-84223091 | MS.gene42656:intron |
| CCTGGAGCAAAGGGATGGTT+TGG | 0.372666 | 3.1:-84222464 | MS.gene42656:CDS |
| CTAAAATGCGAGCCAATTAC+AGG | 0.374069 | 3.1:+84222261 | None:intergenic |
| CACCTCTAAACCAACAGAAT+TGG | 0.374592 | 3.1:-84218351 | MS.gene42656:CDS |
| CCAGGTTCACCAATAATAAC+TGG | 0.377382 | 3.1:+84221345 | None:intergenic |
| ATGCTGTTTCACGTTTAGTT+GGG | 0.380667 | 3.1:-84217536 | MS.gene42656:CDS |
| TAGTTGATCTCCCTTGATAT+GGG | 0.385544 | 3.1:-84219709 | MS.gene42656:CDS |
| TAGCATTTCATTCAGATAAG+AGG | 0.386039 | 3.1:-84222164 | MS.gene42656:CDS |
| GTCATCTTGTGTACTACTTA+GGG | 0.386557 | 3.1:+84217275 | None:intergenic |
| TCTTTCTTTAGATGCCTTGT+CGG | 0.387025 | 3.1:+84218268 | None:intergenic |
| TTCCAGAGCCATTGATGAAC+AGG | 0.388209 | 3.1:-84220545 | MS.gene42656:CDS |
| CGTGCTGCTGAGCTTAAGTA+TGG | 0.388660 | 3.1:-84217981 | MS.gene42656:CDS |
| TTCGAAATCTCCACGAAACT+TGG | 0.390737 | 3.1:+84219669 | None:intergenic |
| CATGCTGTTTCACGTTTAGT+TGG | 0.392382 | 3.1:-84217537 | MS.gene42656:CDS |
| GTTAAACTTCTTGGTGTGTT+GGG | 0.393099 | 3.1:-84216134 | MS.gene42656:CDS |
| TACGGCGGCGAAAACTGATT+TGG | 0.393832 | 3.1:+84223311 | None:intergenic |
| TAAAAGAGTAATACAACAAT+TGG | 0.397575 | 3.1:-84216081 | MS.gene42656:CDS |
| TAAGCTCAGCAGCACGGTTC+AGG | 0.403335 | 3.1:+84217988 | None:intergenic |
| GCATTTAATGAAAGCCCTCC+TGG | 0.407555 | 3.1:-84222482 | MS.gene42656:CDS |
| CTGGATTGTCCGACCCAAAC+AGG | 0.410292 | 3.1:-84217692 | MS.gene42656:CDS |
| TCATAGGCACAAGAAAGAAA+TGG | 0.412617 | 3.1:-84222220 | MS.gene42656:CDS |
| GCAATTCGCCGTTCAAGGGC+TGG | 0.416352 | 3.1:-84217711 | MS.gene42656:CDS |
| TAAATTGATTATTAAGAAGC+AGG | 0.416407 | 3.1:-84215949 | MS.gene42656:CDS |
| CTTCTTCCAATTGGCGCTGA+AGG | 0.417029 | 3.1:+84217946 | None:intergenic |
| GATATTTACAAAGGCAGGAT+TGG | 0.420317 | 3.1:-84222434 | MS.gene42656:CDS |
| GTTCTTCATAAAAGGGTGAT+TGG | 0.421818 | 3.1:-84217765 | MS.gene42656:CDS |
| GATGAAATACACACTGTTGT+AGG | 0.422365 | 3.1:-84219583 | MS.gene42656:CDS |
| GACTTTGAAGGATGCTGTAC+AGG | 0.426213 | 3.1:-84222100 | MS.gene42656:CDS |
| CGTTTAGTTGGGGCACCTCC+TGG | 0.426801 | 3.1:-84217525 | MS.gene42656:CDS |
| TTTCTCTCTCAGTTTGTTGG+AGG | 0.429119 | 3.1:+84217808 | None:intergenic |
| TTTATGTTCATGGGCCCAAC+TGG | 0.431891 | 3.1:-84217657 | MS.gene42656:CDS |
| CCAGTTATTATTGGTGAACC+TGG | 0.435617 | 3.1:-84221345 | MS.gene42656:CDS |
| AAGGAAGTTACAGCATCAAA+TGG | 0.441969 | 3.1:-84219625 | MS.gene42656:CDS |
| GCTTAGCGAGAAGACTTTGA+AGG | 0.443463 | 3.1:-84222112 | MS.gene42656:CDS |
| TGTTAAACTTCTTGGTGTGT+TGG | 0.446903 | 3.1:-84216135 | MS.gene42656:CDS |
| GAAAATTTCGAGTGAAAGAG+TGG | 0.447041 | 3.1:+84223133 | None:intergenic |
| ACAAGTGGTGCAATGGATGC+TGG | 0.447156 | 3.1:-84218894 | MS.gene42656:CDS |
| AGAGGCGAACTTCGATGTAT+AGG | 0.447964 | 3.1:-84218846 | MS.gene42656:CDS |
| AAAAGAATTGGCAGAACAAT+GGG | 0.449869 | 3.1:-84218201 | MS.gene42656:CDS |
| TTAACCTTCCTGTTCATCAA+TGG | 0.450441 | 3.1:+84220537 | None:intergenic |
| TTACAGAGATTGTAAGCAAA+TGG | 0.453858 | 3.1:-84217851 | MS.gene42656:CDS |
| CTTGCTGGTGCCAAGTTTCG+TGG | 0.455010 | 3.1:-84219679 | MS.gene42656:CDS |
| AGAACAGGTTCTTCATAAAA+GGG | 0.456874 | 3.1:-84217772 | MS.gene42656:CDS |
| CGATCTTGGACAACTCTCAT+AGG | 0.457730 | 3.1:-84222236 | MS.gene42656:CDS |
| AGTTCGCCTCTTCCAAGCAT+TGG | 0.458276 | 3.1:+84218858 | None:intergenic |
| TCATAAAAGGGTGATTGGTC+AGG | 0.458760 | 3.1:-84217760 | MS.gene42656:CDS |
| CGGAGGCGACATTGGTGGTT+CGG | 0.458976 | 3.1:+84223169 | None:intergenic |
| CGAAGGATATTTACAAAGGC+AGG | 0.460106 | 3.1:-84222439 | MS.gene42656:CDS |
| GGCTAAAGCTTTGCCAAGCT+CGG | 0.460973 | 3.1:+84217623 | None:intergenic |
| TTCCTGTTCATCAATGGCTC+TGG | 0.461594 | 3.1:+84220543 | None:intergenic |
| GCTCCGGCGGAGCGGTAAGA+AGG | 0.462490 | 3.1:+84223099 | None:intergenic |
| ATGAAATACACACTGTTGTA+GGG | 0.469056 | 3.1:-84219582 | MS.gene42656:CDS |
| TTCGTGGAGATTTCGAAGAA+AGG | 0.470766 | 3.1:-84219663 | MS.gene42656:CDS |
| ATGAACATAAAACTTGCAAT+TGG | 0.478545 | 3.1:+84217669 | None:intergenic |
| CGGAGTTCACAGAAATGGCT+TGG | 0.478803 | 3.1:-84222567 | MS.gene42656:CDS |
| ATGTAAATGCGTACTTTGAT+CGG | 0.480582 | 3.1:+84222053 | None:intergenic |
| ACAGACGGAGTTCACAGAAA+TGG | 0.480631 | 3.1:-84222572 | MS.gene42656:CDS |
| GAAAGCCCTCCTGGAGCAAA+GGG | 0.480751 | 3.1:-84222473 | MS.gene42656:CDS |
| AGATAGAGCTGTCTTGAAGC+TGG | 0.481293 | 3.1:-84218321 | MS.gene42656:CDS |
| AACTTGTTGAAGCCAATGCT+TGG | 0.482002 | 3.1:-84218870 | MS.gene42656:CDS |
| CACGCCTAGCAAGTTCCGTC+AGG | 0.482259 | 3.1:+84221448 | None:intergenic |
| TCTATCTCATCCAATTCTGT+TGG | 0.483420 | 3.1:+84218341 | None:intergenic |
| AGCCAAAACCTACCTTTGTC+TGG | 0.484231 | 3.1:+84218600 | None:intergenic |
| CATAGGCACAAGAAAGAAAT+GGG | 0.485025 | 3.1:-84222219 | MS.gene42656:CDS |
| TATGAAGCATTGGACAAGTA+CGG | 0.486711 | 3.1:-84221477 | MS.gene42656:CDS |
| GATGTCCCTTCAGCGCCAAT+TGG | 0.487111 | 3.1:-84217952 | MS.gene42656:CDS |
| CAGTGAGATAAGCAAAATAG+TGG | 0.488115 | 3.1:-84217136 | MS.gene42656:CDS |
| GTTTGTTGGAGGTTTGATAG+TGG | 0.489053 | 3.1:+84217819 | None:intergenic |
| GGGGCACCTCCTGGTTATGT+TGG | 0.490521 | 3.1:-84217516 | MS.gene42656:CDS |
| TGAAATCTACGTTCAAGTGC+AGG | 0.491616 | 3.1:+84218780 | None:intergenic |
| GAACTTCGCGGAGGCGACAT+TGG | 0.492733 | 3.1:+84223161 | None:intergenic |
| TCTGGTTCTAGAAGCAGTTA+CGG | 0.495069 | 3.1:+84223293 | None:intergenic |
| CTGAATGAAATGCTAGCAAA+AGG | 0.495683 | 3.1:+84222172 | None:intergenic |
| AGCTGCTGCAAAGCTGAAGA+TGG | 0.502175 | 3.1:-84218378 | MS.gene42656:CDS |
| AATGCTTCATATTTCCCCTC+AGG | 0.503158 | 3.1:+84221489 | None:intergenic |
| CTAGCTGAGTTCCAAAACTC+TGG | 0.504910 | 3.1:-84217912 | MS.gene42656:CDS |
| GTTGAGAATGAAATTGCAAT+GGG | 0.508716 | 3.1:-84216059 | MS.gene42656:CDS |
| GCTCAGCAGCTTCCATCTCT+AGG | 0.512485 | 3.1:+84218021 | None:intergenic |
| TGGAGAAACCTGAGAAGCTC+CGG | 0.515428 | 3.1:+84223083 | None:intergenic |
| GAGGGCTTTCATTAAATGCT+CGG | 0.515461 | 3.1:+84222486 | None:intergenic |
| TCATCATCTCGGCCTATGAC+AGG | 0.517488 | 3.1:+84221414 | None:intergenic |
| CGATGCAATTCGCCGTTCAA+GGG | 0.518962 | 3.1:-84217715 | MS.gene42656:CDS |
| GATGCCGATGATACTCCATC+AGG | 0.519448 | 3.1:-84215993 | MS.gene42656:CDS |
| AATTGCAATGGGAGTTCTAA+GGG | 0.520174 | 3.1:-84216048 | MS.gene42656:CDS |
| TCAATGCGATTCATGAACTC+TGG | 0.520858 | 3.1:+84217189 | None:intergenic |
| AACCATCCCTTTGCTCCAGG+AGG | 0.524002 | 3.1:+84222467 | None:intergenic |
| CAAGCAATGAACCCATATCA+AGG | 0.524420 | 3.1:+84219698 | None:intergenic |
| GGTTATGTTGGTTATGAAGA+AGG | 0.524973 | 3.1:-84217504 | MS.gene42656:CDS |
| TAATAATCAATTTATTTAAG+GGG | 0.525743 | 3.1:+84215958 | None:intergenic |
| AGCTAACTGAAGTGGTCCGC+AGG | 0.526283 | 3.1:-84217476 | MS.gene42656:CDS |
| AGCTGTCTTGAAGCTGGAGA+TGG | 0.526489 | 3.1:-84218315 | MS.gene42656:CDS |
| TTGAAGCCAATGCTTGGAAG+AGG | 0.528774 | 3.1:-84218864 | MS.gene42656:CDS |
| ATGAAGCATTGGACAAGTAC+GGG | 0.529845 | 3.1:-84221476 | MS.gene42656:CDS |
| TTGTTACAATTGTTGGATGA+CGG | 0.529920 | 3.1:-84217390 | MS.gene42656:CDS |
| ACGACCTGACGGAACTTGCT+AGG | 0.530980 | 3.1:-84221452 | MS.gene42656:CDS |
| TCAAATAGTACCACAGAGTA+GGG | 0.532302 | 3.1:+84217450 | None:intergenic |
| TCTCACTGGAATCCAAAGGC+TGG | 0.532544 | 3.1:+84217151 | None:intergenic |
| AATAATCAATTTATTTAAGG+GGG | 0.532765 | 3.1:+84215959 | None:intergenic |
| TTCTTCCAATTGGCGCTGAA+GGG | 0.532914 | 3.1:+84217947 | None:intergenic |
| GATATTGTATCTTCAACAGA+TGG | 0.534114 | 3.1:+84218738 | None:intergenic |
| AAGGGGAGATTTCAAAGAAG+AGG | 0.534959 | 3.1:-84216030 | MS.gene42656:CDS |
| AGCAAGTTGTTGAGTTGGCT+AGG | 0.534977 | 3.1:-84217224 | MS.gene42656:CDS |
| TTACAATCTCTGTAATATCA+AGG | 0.538172 | 3.1:+84217859 | None:intergenic |
| AAAGGGATGGTTTGGCTCGA+AGG | 0.539670 | 3.1:-84222456 | MS.gene42656:CDS |
| GGAGTTCACAGAAATGGCTT+GGG | 0.540346 | 3.1:-84222566 | MS.gene42656:CDS |
| ACTCCTTCTTACCGCTCCGC+CGG | 0.540383 | 3.1:-84223102 | MS.gene42656:CDS |
| TAGGGTTTCAAGTATGTGAT+GGG | 0.543221 | 3.1:+84217293 | None:intergenic |
| CCAAACCATCCCTTTGCTCC+AGG | 0.543335 | 3.1:+84222464 | None:intergenic |
| CTTTATAGCTCAGCAACCTA+AGG | 0.543417 | 3.1:-84222380 | MS.gene42656:intron |
| TGCAATTGGCCTGTTTGGGT+CGG | 0.545153 | 3.1:+84217683 | None:intergenic |
| TGAGGGGAAATATGAAGCAT+TGG | 0.545382 | 3.1:-84221487 | MS.gene42656:CDS |
| CGGAAAGAGAACGAGTGAGA+GGG | 0.549459 | 3.1:+84223268 | None:intergenic |
| TTAGGGTTTCAAGTATGTGA+TGG | 0.549563 | 3.1:+84217292 | None:intergenic |
| GGCAAGCTTGATCCTGTCAT+AGG | 0.549930 | 3.1:-84221426 | MS.gene42656:CDS |
| TGATAGAGTCAACCTAGAGA+TGG | 0.550120 | 3.1:-84218033 | MS.gene42656:CDS |
| TGAAAGCCCTCCTGGAGCAA+AGG | 0.550576 | 3.1:-84222474 | MS.gene42656:CDS |
| TTCGAGTGAAAGAGTGGGAG+AGG | 0.552186 | 3.1:+84223139 | None:intergenic |
| TTCATGGGCCCAACTGGTGT+CGG | 0.552435 | 3.1:-84217651 | MS.gene42656:CDS |
| AGGGGCTACAAGTGGTGCAA+TGG | 0.552673 | 3.1:-84218901 | MS.gene42656:CDS |
| CTTCGCGGAGGCGACATTGG+TGG | 0.554161 | 3.1:+84223164 | None:intergenic |
| TGCTGTTTCACGTTTAGTTG+GGG | 0.555353 | 3.1:-84217535 | MS.gene42656:CDS |
| CCTTGAACGGCGAATTGCAT+CGG | 0.555633 | 3.1:+84217716 | None:intergenic |
| AAAACCTACCTTTGTCTGGT+AGG | 0.556897 | 3.1:+84218604 | None:intergenic |
| ACCATCCCTTTGCTCCAGGA+GGG | 0.557096 | 3.1:+84222468 | None:intergenic |
| AGGAAGTTACAGCATCAAAT+GGG | 0.557604 | 3.1:-84219624 | MS.gene42656:CDS |
| AGTCAATAAACAACAAATTG+TGG | 0.558384 | 3.1:-84222512 | MS.gene42656:CDS |
| AGATGGAAAGAGTGAAGGGC+AGG | 0.559671 | 3.1:-84216199 | MS.gene42656:CDS |
| ATAATCTGAGAACGTGAAAG+AGG | 0.562276 | 3.1:+84223195 | None:intergenic |
| CAAGTGGTGCAATGGATGCT+GGG | 0.562815 | 3.1:-84218893 | MS.gene42656:CDS |
| CGGACAATCCAGCCCTTGAA+CGG | 0.564616 | 3.1:+84217703 | None:intergenic |
| CTTGCCTGATGGAGTATCAT+CGG | 0.565410 | 3.1:+84215989 | None:intergenic |
| GATGCTGTACAGGCTATTCG+TGG | 0.567628 | 3.1:-84222090 | MS.gene42656:CDS |
| CTTTCCGCTCCACTCTTCAA+CGG | 0.568624 | 3.1:-84223252 | MS.gene42656:CDS |
| TATTATTGGTGAACCTGGTG+TGG | 0.569361 | 3.1:-84221340 | MS.gene42656:CDS |
| ATTGACTCGTGCAGCATCAA+CGG | 0.569391 | 3.1:+84222528 | None:intergenic |
| GCGGAAAGAGAACGAGTGAG+AGG | 0.570766 | 3.1:+84223267 | None:intergenic |
| TAGGCCGAGATGATGAGATT+CGG | 0.572043 | 3.1:-84221407 | MS.gene42656:CDS |
| ATACACACTGTTGTAGGGGC+AGG | 0.573554 | 3.1:-84219577 | MS.gene42656:intron |
| GGTTGAGAATGAAATTGCAA+TGG | 0.573774 | 3.1:-84216060 | MS.gene42656:CDS |
| AAATGTGTGACATTAGTCAT+TGG | 0.576835 | 3.1:+84215899 | None:intergenic |
| GTTCACAGAAATGGCTTGGG+AGG | 0.577541 | 3.1:-84222563 | MS.gene42656:CDS |
| ATACAATATCTATTCTCCGC+GGG | 0.578849 | 3.1:-84218725 | MS.gene42656:CDS |
| ATCAAATAGTACCACAGAGT+AGG | 0.581210 | 3.1:+84217449 | None:intergenic |
| GGACGGATTACTGATTCTCA+AGG | 0.581663 | 3.1:-84217369 | MS.gene42656:CDS |
| CTGCAGATGGAAAGAGTGAA+GGG | 0.581692 | 3.1:-84216203 | MS.gene42656:intron |
| TACAATTGTTGGATGACGGA+CGG | 0.583069 | 3.1:-84217386 | MS.gene42656:CDS |
| AATAAGATCAGTCAAAGAAG+AGG | 0.583880 | 3.1:-84218153 | MS.gene42656:intron |
| CAACCATGGCATCCGCAACA+AGG | 0.584044 | 3.1:+84215922 | None:intergenic |
| AAGGTTGAAAGCTGTCCTGA+AGG | 0.587009 | 3.1:-84219644 | MS.gene42656:CDS |
| GCCCTCCTGGAGCAAAGGGA+TGG | 0.590899 | 3.1:-84222469 | MS.gene42656:CDS |
| ATTATTGGTGAACCTGGTGT+GGG | 0.592632 | 3.1:-84221339 | MS.gene42656:CDS |
| ATAATCAATTTATTTAAGGG+GGG | 0.595757 | 3.1:+84215960 | None:intergenic |
| GAAGCAGGAGAGCCTTGTTG+CGG | 0.596488 | 3.1:-84215934 | MS.gene42656:CDS |
| ACATTAGTCATTGGCAACCA+TGG | 0.599015 | 3.1:+84215908 | None:intergenic |
| GAGCCTTGTTGCGGATGCCA+TGG | 0.599303 | 3.1:-84215925 | MS.gene42656:CDS |
| CTTATCTCACTGGAATCCAA+AGG | 0.601378 | 3.1:+84217147 | None:intergenic |
| GCTGCAGATGGAAAGAGTGA+AGG | 0.601449 | 3.1:-84216204 | MS.gene42656:intron |
| ATAATTCTGTACAGATCCTG+AGG | 0.609934 | 3.1:-84221505 | MS.gene42656:intron |
| CCTGAGAAGCTCCGGCGGAG+CGG | 0.610178 | 3.1:+84223091 | None:intergenic |
| GGAAAGAGAACGAGTGAGAG+GGG | 0.614756 | 3.1:+84223269 | None:intergenic |
| AATCTCTGTAATATCAAGGT+CGG | 0.614909 | 3.1:+84217863 | None:intergenic |
| GGGAAAACTGCAATTGCTGA+AGG | 0.618679 | 3.1:-84221318 | MS.gene42656:CDS |
| TCTTCATAACCAACATAACC+AGG | 0.620796 | 3.1:+84217507 | None:intergenic |
| CGATGATACTCCATCAGGCA+AGG | 0.621470 | 3.1:-84215988 | MS.gene42656:CDS |
| AGGTGGACAGCTAACTGAAG+TGG | 0.621718 | 3.1:-84217484 | MS.gene42656:CDS |
| GGCTCGAAGGATATTTACAA+AGG | 0.622892 | 3.1:-84222443 | MS.gene42656:CDS |
| TATGTTGGTTATGAAGAAGG+TGG | 0.622969 | 3.1:-84217501 | MS.gene42656:CDS |
| AAGCAATGAACCCATATCAA+GGG | 0.624098 | 3.1:+84219699 | None:intergenic |
| GGAGCGGTAAGAAGGAGTAG+AGG | 0.626430 | 3.1:+84223107 | None:intergenic |
| GAGATTGTAAGCAAATGGAC+TGG | 0.630694 | 3.1:-84217846 | MS.gene42656:CDS |
| TTCACAGAAATGGCTTGGGA+GGG | 0.632112 | 3.1:-84222562 | MS.gene42656:CDS |
| AGGAAGCTACCGTTGAAGAG+TGG | 0.632680 | 3.1:+84223243 | None:intergenic |
| AGAAACCTGAGAAGCTCCGG+CGG | 0.634144 | 3.1:+84223086 | None:intergenic |
| GTGATTATGACTTCAAACAT+CGG | 0.636820 | 3.1:-84217318 | MS.gene42656:CDS |
| ATATAGAAAATACATTGAGA+AGG | 0.637210 | 3.1:-84218805 | MS.gene42656:CDS |
| GGAAAACTGCAATTGCTGAA+GGG | 0.637886 | 3.1:-84221317 | MS.gene42656:intron |
| GGATATTGCTGTAAAATCTG+TGG | 0.638903 | 3.1:-84217739 | MS.gene42656:CDS |
| CATAGCGCTCACGCAACCCG+CGG | 0.642485 | 3.1:+84218709 | None:intergenic |
| CATACTTAAGCTCAGCAGCA+CGG | 0.643071 | 3.1:+84217982 | None:intergenic |
| AAAATTTCGAGTGAAAGAGT+GGG | 0.644362 | 3.1:+84223134 | None:intergenic |
| CTGACGGAACTTGCTAGGCG+TGG | 0.652805 | 3.1:-84221447 | MS.gene42656:CDS |
| GGGTGATGAGTATGTGTCTG+TGG | 0.655119 | 3.1:-84222199 | MS.gene42656:CDS |
| AGAGCCATTGATGAACAGGA+AGG | 0.655742 | 3.1:-84220541 | MS.gene42656:intron |
| GGATTACTGATTCTCAAGGA+AGG | 0.657864 | 3.1:-84217365 | MS.gene42656:CDS |
| TAATTCTGTACAGATCCTGA+GGG | 0.664800 | 3.1:-84221504 | MS.gene42656:intron |
| TCTTAATCAGATATCACAGA+CGG | 0.665399 | 3.1:-84222587 | MS.gene42656:intron |
| TTAGCACAACGTATAGTGCG+TGG | 0.667155 | 3.1:-84220573 | MS.gene42656:CDS |
| GAACGCTTCCTACCAGACAA+AGG | 0.671562 | 3.1:-84218612 | MS.gene42656:intron |
| GATACAATATCTATTCTCCG+CGG | 0.673941 | 3.1:-84218726 | MS.gene42656:CDS |
| AGCGCCGAATCTCATCATCT+CGG | 0.674156 | 3.1:+84221403 | None:intergenic |
| TGAAATACACACTGTTGTAG+GGG | 0.677119 | 3.1:-84219581 | MS.gene42656:CDS |
| CAAGTACGGGAACGACCTGA+CGG | 0.680168 | 3.1:-84221463 | MS.gene42656:CDS |
| TCTTGCAGATCGATACATCA+CGG | 0.687648 | 3.1:-84218634 | MS.gene42656:CDS |
| GAGCGCTATGAATTACATCA+CGG | 0.690407 | 3.1:-84218696 | MS.gene42656:CDS |
| CCGCAGGAGACCCTACTCTG+TGG | 0.691203 | 3.1:-84217460 | MS.gene42656:CDS |
| TCACTAATAGGGGCTACAAG+TGG | 0.695279 | 3.1:-84218909 | MS.gene42656:intron |
| ATTGCAATGGGAGTTCTAAG+GGG | 0.698218 | 3.1:-84216047 | MS.gene42656:CDS |
| TTATTGGTGAACCTGGTGTG+GGG | 0.699943 | 3.1:-84221338 | MS.gene42656:CDS |
| GGTTCTAGAAGCAGTTACGG+CGG | 0.720714 | 3.1:+84223296 | None:intergenic |
| AGAGTGGGAGAGGAACTTCG+CGG | 0.722520 | 3.1:+84223149 | None:intergenic |
| GTGGGAGAGGAACTTCGCGG+AGG | 0.726240 | 3.1:+84223152 | None:intergenic |
| CCACAGAGTAGGGTCTCCTG+CGG | 0.727460 | 3.1:+84217460 | None:intergenic |
| GCTACCGTTGAAGAGTGGAG+CGG | 0.730802 | 3.1:+84223248 | None:intergenic |
| AATTCTGTACAGATCCTGAG+GGG | 0.740640 | 3.1:-84221503 | MS.gene42656:intron |
| TCATAACCAACATAACCAGG+AGG | 0.768115 | 3.1:+84217510 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.1 | gene | 84215911 | 84223361 | 84215911 | ID=MS.gene42656 |
| chr3.1 | mRNA | 84215911 | 84223361 | 84215911 | ID=MS.gene42656.t1;Parent=MS.gene42656 |
| chr3.1 | exon | 84223092 | 84223361 | 84223092 | ID=MS.gene42656.t1.exon1;Parent=MS.gene42656.t1 |
| chr3.1 | CDS | 84223092 | 84223361 | 84223092 | ID=cds.MS.gene42656.t1;Parent=MS.gene42656.t1 |
| chr3.1 | exon | 84222381 | 84222599 | 84222381 | ID=MS.gene42656.t1.exon2;Parent=MS.gene42656.t1 |
| chr3.1 | CDS | 84222381 | 84222599 | 84222381 | ID=cds.MS.gene42656.t1;Parent=MS.gene42656.t1 |
| chr3.1 | exon | 84222067 | 84222304 | 84222067 | ID=MS.gene42656.t1.exon3;Parent=MS.gene42656.t1 |
| chr3.1 | CDS | 84222067 | 84222304 | 84222067 | ID=cds.MS.gene42656.t1;Parent=MS.gene42656.t1 |
| chr3.1 | exon | 84221318 | 84221513 | 84221318 | ID=MS.gene42656.t1.exon4;Parent=MS.gene42656.t1 |
| chr3.1 | CDS | 84221318 | 84221513 | 84221318 | ID=cds.MS.gene42656.t1;Parent=MS.gene42656.t1 |
| chr3.1 | exon | 84220542 | 84220596 | 84220542 | ID=MS.gene42656.t1.exon5;Parent=MS.gene42656.t1 |
| chr3.1 | CDS | 84220542 | 84220596 | 84220542 | ID=cds.MS.gene42656.t1;Parent=MS.gene42656.t1 |
| chr3.1 | exon | 84219578 | 84219728 | 84219578 | ID=MS.gene42656.t1.exon6;Parent=MS.gene42656.t1 |
| chr3.1 | CDS | 84219578 | 84219728 | 84219578 | ID=cds.MS.gene42656.t1;Parent=MS.gene42656.t1 |
| chr3.1 | exon | 84218613 | 84218921 | 84218613 | ID=MS.gene42656.t1.exon7;Parent=MS.gene42656.t1 |
| chr3.1 | CDS | 84218613 | 84218921 | 84218613 | ID=cds.MS.gene42656.t1;Parent=MS.gene42656.t1 |
| chr3.1 | exon | 84218154 | 84218419 | 84218154 | ID=MS.gene42656.t1.exon8;Parent=MS.gene42656.t1 |
| chr3.1 | CDS | 84218154 | 84218419 | 84218154 | ID=cds.MS.gene42656.t1;Parent=MS.gene42656.t1 |
| chr3.1 | exon | 84217128 | 84218057 | 84217128 | ID=MS.gene42656.t1.exon9;Parent=MS.gene42656.t1 |
| chr3.1 | CDS | 84217128 | 84218057 | 84217128 | ID=cds.MS.gene42656.t1;Parent=MS.gene42656.t1 |
| chr3.1 | exon | 84215911 | 84216219 | 84215911 | ID=MS.gene42656.t1.exon10;Parent=MS.gene42656.t1 |
| chr3.1 | CDS | 84215911 | 84216219 | 84215911 | ID=cds.MS.gene42656.t1;Parent=MS.gene42656.t1 |
| Gene Sequence |
| Protein sequence |