AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene005567

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene005567.t1 MTR_1g088180 87.387 444 25 1 1 413 1 444 0.0 666
MS.gene005567.t1 MTR_8g058530 80.658 243 45 1 1 241 1 243 6.47e-116 341
MS.gene005567.t1 MTR_7g108810 80.658 243 45 1 1 241 102 344 2.44e-113 338
MS.gene005567.t1 MTR_1g083400 64.315 241 82 2 1 238 32 271 4.11e-83 256
MS.gene005567.t1 MTR_7g112760 67.179 195 62 1 1 195 1 193 3.29e-79 245
MS.gene005567.t1 MTR_7g112760 67.179 195 62 1 1 195 1 193 1.42e-78 245
MS.gene005567.t1 MTR_3g092580 62.000 200 64 1 1 188 108 307 1.93e-75 240
MS.gene005567.t1 MTR_2g031870 60.345 116 43 2 263 375 98 213 2.09e-35 132
MS.gene005567.t1 MTR_2g031870 60.345 116 43 2 263 375 124 239 3.72e-35 132
MS.gene005567.t1 MTR_8g494240 59.483 116 44 2 263 375 122 237 5.07e-34 129
MS.gene005567.t1 MTR_8g494240 59.483 116 44 2 263 375 122 237 7.88e-34 128
MS.gene005567.t1 MTR_8g494240 59.483 116 44 2 263 375 122 237 3.29e-33 129
MS.gene005567.t1 MTR_8g092810 51.163 129 51 3 263 379 124 252 5.89e-29 118
MS.gene005567.t1 MTR_5g015340 38.182 110 64 2 263 368 120 229 4.81e-13 69.7
MS.gene005567.t1 MTR_5g015340 38.182 110 64 2 263 368 120 229 4.81e-13 69.7
MS.gene005567.t1 MTR_5g015340 35.766 137 83 3 236 368 94 229 1.05e-12 69.7
MS.gene005567.t1 MTR_8g032130 74.359 39 10 0 340 378 1 39 5.24e-12 62.8
MS.gene005567.t1 MTR_4g097130 31.852 135 78 5 252 375 120 251 2.94e-11 64.7
MS.gene005567.t1 MTR_4g097130 31.852 135 78 5 252 375 120 251 3.09e-11 64.3
MS.gene005567.t1 MTR_4g097130 33.051 118 69 4 265 375 142 256 9.16e-11 63.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene005567.t1 AT1G02840 59.790 286 102 3 1 275 1 284 3.63e-84 259
MS.gene005567.t1 AT1G02840 62.313 268 88 3 1 257 1 266 3.52e-83 256
MS.gene005567.t1 AT1G02840 62.313 268 88 3 1 257 1 266 3.52e-83 256
MS.gene005567.t1 AT1G02840 62.313 268 88 3 1 257 1 266 3.52e-83 256
MS.gene005567.t1 AT1G02840 62.992 254 84 2 1 246 1 252 3.95e-82 254
MS.gene005567.t1 AT1G09140 64.615 195 67 1 1 195 1 193 1.59e-77 241
MS.gene005567.t1 AT1G09140 64.615 195 67 1 1 195 1 193 1.95e-77 241
MS.gene005567.t1 AT1G09140 64.615 195 67 1 1 195 1 193 2.65e-77 240
MS.gene005567.t1 AT4G02430 63.819 199 56 3 1 188 1 194 5.51e-74 233
MS.gene005567.t1 AT3G49430 58.291 199 72 1 1 188 1 199 1.16e-73 233
MS.gene005567.t1 AT3G49430 58.291 199 72 1 1 188 1 199 1.16e-73 233
MS.gene005567.t1 AT3G49430 58.291 199 72 1 1 188 1 199 1.16e-73 233
MS.gene005567.t1 AT3G49430 58.291 199 72 1 1 188 1 199 1.16e-73 233
MS.gene005567.t1 AT3G49430 58.291 199 72 1 1 188 1 199 1.16e-73 233
MS.gene005567.t1 AT3G49430 58.291 199 72 1 1 188 1 199 1.16e-73 233
MS.gene005567.t1 AT4G02430 63.819 199 56 3 1 188 1 194 1.69e-73 232
MS.gene005567.t1 AT3G49430 58.291 199 72 1 1 188 1 199 2.84e-73 231
MS.gene005567.t1 AT4G02430 63.483 178 52 2 1 167 1 176 5.45e-66 209
MS.gene005567.t1 AT4G02430 61.494 174 51 3 26 188 24 192 8.25e-59 194
MS.gene005567.t1 AT1G49950 41.860 129 63 5 258 376 113 239 1.65e-16 80.1
MS.gene005567.t1 AT1G49950 41.860 129 63 5 258 376 113 239 1.65e-16 80.1
MS.gene005567.t1 AT1G49950 41.860 129 63 5 258 376 113 239 1.65e-16 80.1
MS.gene005567.t1 AT5G67580 33.846 130 78 5 251 375 114 240 8.11e-11 63.2
MS.gene005567.t1 AT5G67580 33.846 130 78 5 251 375 114 240 8.11e-11 63.2

Find 126 sgRNAs with CRISPR-Local

Find 322 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GGTGATTGTCTTGCTCTTTC+TGG 0.066799 1.1:+64982951 None:intergenic
AAGCCAAGATTTACCATCTT+TGG 0.173726 1.1:+64982716 None:intergenic
AAACATTTGTTTATGAAGTA+TGG 0.237511 1.1:-64986789 MS.gene005567:CDS
TCGTGACCCTTCTCATTATA+GGG 0.265643 1.1:-64986268 MS.gene005567:CDS
GTGCAGCTTCGACCCGTAAT+TGG 0.279387 1.1:+64986640 None:intergenic
AGCCAAGATTTACCATCTTT+GGG 0.322088 1.1:+64982717 None:intergenic
TAGATATAGCCTCCATTATA+AGG 0.330489 1.1:+64985608 None:intergenic
AGCTTGACGGCTCTGAGTTC+CGG 0.330618 1.1:-64986359 MS.gene005567:CDS
TACCCTTGGGAAATTTGCTT+TGG 0.364511 1.1:+64986184 None:intergenic
GTCGTGACCCTTCTCATTAT+AGG 0.367295 1.1:-64986269 MS.gene005567:CDS
TGCATCCTGCCAGGATCTTA+AGG 0.372928 1.1:-64986496 MS.gene005567:CDS
CAGAATGGATAACCTTATAA+TGG 0.373169 1.1:-64985620 MS.gene005567:CDS
AATGTTTAACTTCTCTTTCA+CGG 0.383899 1.1:+64986805 None:intergenic
CCCAGGTTGTTCATGATGGA+AGG 0.411711 1.1:-64986440 MS.gene005567:CDS
AGCGACTCTTTGAAGTTTGA+CGG 0.414603 1.1:+64985001 None:intergenic
GGCTATATCTAGCTTGAATC+AGG 0.419555 1.1:-64985596 MS.gene005567:CDS
GAACGAGAAACTAATCTTGC+TGG 0.420598 1.1:+64986144 None:intergenic
TGCGGCTCCACCTGCGGCTG+CGG 0.428666 1.1:+64986232 None:intergenic
GCCCTCTTCTGCATCCTGCC+AGG 0.434027 1.1:-64986505 MS.gene005567:CDS
CGTTGTGAGGATTTACCCTT+GGG 0.434420 1.1:+64986171 None:intergenic
AGTCTAACTCAGACTGTGTA+AGG 0.449162 1.1:+64982871 None:intergenic
AATTTGCTTTGGCTATGTCC+TGG 0.451019 1.1:+64986195 None:intergenic
ATGCCTCTATGAACTGTGAC+AGG 0.451365 1.1:-64982908 MS.gene005567:CDS
TTGAGCAGAACTGTCTATGT+TGG 0.452806 1.1:-64986846 MS.gene005567:CDS
ATCCCAAAGATGGTAAATCT+TGG 0.454228 1.1:-64982719 MS.gene005567:CDS
CATAACTCGCATTGATCTAA+AGG 0.464349 1.1:-64986763 MS.gene005567:CDS
TGAGCAGAACTGTCTATGTT+GGG 0.467645 1.1:-64986845 MS.gene005567:CDS
GCGACTCTTTGAAGTTTGAC+GGG 0.468645 1.1:+64985002 None:intergenic
TTGTGGTCTTGATAAAGAAC+AGG 0.470584 1.1:+64986104 None:intergenic
AAGGATCACATGCGAAAAGC+AGG 0.471288 1.1:-64986477 MS.gene005567:CDS
GGCAGCCACATTTGCTGAAG+TGG 0.473979 1.1:-64982811 MS.gene005567:CDS
AACAATGGCCAGGGTGGTCG+AGG 0.475550 1.1:-64986570 MS.gene005567:CDS
GAATATCGTGTCCTAGTCAA+TGG 0.486962 1.1:-64986531 MS.gene005567:CDS
CATGATGGAAGGGCTACTAC+TGG 0.489348 1.1:-64986429 MS.gene005567:CDS
CTTCTGCAGCTTCCTCTATG+AGG 0.491892 1.1:+64982784 None:intergenic
GCATGTGATCCTTAAGATCC+TGG 0.492160 1.1:+64986487 None:intergenic
CTTTATCAAGACCACAATCA+AGG 0.498752 1.1:-64986098 MS.gene005567:CDS
CGCAGCCGTAGCTACAGTCC+AGG 0.500875 1.1:-64986213 MS.gene005567:CDS
CTGAAGTCTCTCACATCTAG+TGG 0.502259 1.1:-64984968 MS.gene005567:CDS
CAAGACCACAATCAAGGCCT+AGG 0.505060 1.1:-64986092 MS.gene005567:intron
GAAGCTTATGTAGAAGCTGC+AGG 0.505128 1.1:-64982765 MS.gene005567:CDS
TAAAGAACAGGATCTAGATC+TGG 0.509339 1.1:+64986116 None:intergenic
CCCTTCCATCATGAACAACC+TGG 0.514903 1.1:+64986439 None:intergenic
AGGCGGGACTCTAGAAGTCT+TGG 0.515579 1.1:-64986291 MS.gene005567:CDS
TTCTGCCTCCCTTCCAACAC+GGG 0.517994 1.1:+64982930 None:intergenic
TTCTGCAGCTTCCTCTATGA+GGG 0.519176 1.1:+64982785 None:intergenic
CAGGTCTTACGTTCGTGTGA+GGG 0.523597 1.1:-64986325 MS.gene005567:CDS
ATCTAGTGGAAAACTGATCA+AGG 0.524604 1.1:-64984954 MS.gene005567:intron
TCTCTTTCACGGATATCGCC+AGG 0.525115 1.1:+64986816 None:intergenic
CAGTATTCACAACAATGGCC+AGG 0.526282 1.1:-64986580 MS.gene005567:CDS
GGCTTCCACTTCAGCAAATG+TGG 0.527029 1.1:+64982806 None:intergenic
CCAGGTCTTACGTTCGTGTG+AGG 0.529487 1.1:-64986326 MS.gene005567:CDS
AGCAAGACAATCACCCGTGT+TGG 0.529523 1.1:-64982943 MS.gene005567:CDS
GAAGATATAGCCGCAGCCGC+AGG 0.530030 1.1:-64986242 MS.gene005567:CDS
GTCTATGTTGGGAATCTACC+TGG 0.530479 1.1:-64986834 MS.gene005567:CDS
AGCTGTAGTATTACAAAGGA+AGG 0.530942 1.1:+64982691 None:intergenic
GACACGATATTCAGAGTGAC+TGG 0.532664 1.1:+64986542 None:intergenic
AAGGGCTACTACTGGGATTG+TGG 0.536560 1.1:-64986421 MS.gene005567:CDS
CCAGGTTGTTCATGATGGAA+GGG 0.536752 1.1:-64986439 MS.gene005567:CDS
AGACAATCACCCGTGTTGGA+AGG 0.540537 1.1:-64982939 MS.gene005567:CDS
TGCTCTTTCTGGATATGCTG+AGG 0.541893 1.1:+64982962 None:intergenic
GACAATCACCCGTGTTGGAA+GGG 0.544342 1.1:-64982938 MS.gene005567:CDS
TACGGCTGCGGCTCCACCTG+CGG 0.545003 1.1:+64986226 None:intergenic
CTTTCTGGATATGCTGAGGT+AGG 0.546286 1.1:+64982966 None:intergenic
CTTCTTCCCCTATAATGAGA+AGG 0.548764 1.1:+64986261 None:intergenic
AAGGATTGCTAATTTCATAG+AGG 0.551226 1.1:-64985554 MS.gene005567:intron
TTCTTCCCCTATAATGAGAA+GGG 0.552088 1.1:+64986262 None:intergenic
GTGATCCTTAAGATCCTGGC+AGG 0.553887 1.1:+64986491 None:intergenic
GGCTGCCTCTTGTGCAGACA+CGG 0.556041 1.1:+64982827 None:intergenic
ACGTTGTGAGGATTTACCCT+TGG 0.556462 1.1:+64986170 None:intergenic
CTGGACTGTAGCTACGGCTG+CGG 0.560722 1.1:+64986214 None:intergenic
GGGAGAAACAATCCCAAAGA+TGG 0.562021 1.1:-64982729 MS.gene005567:CDS
AATGCTGACGATGCAATTTG+TGG 0.562206 1.1:-64986690 MS.gene005567:CDS
GATATAGCCGCAGCCGCAGG+TGG 0.564013 1.1:-64986239 MS.gene005567:CDS
ATTCTGCCTCCCTTCCAACA+CGG 0.567843 1.1:+64982929 None:intergenic
AGCTGCAGGGGAAAGACTGA+AGG 0.570597 1.1:-64982751 MS.gene005567:CDS
AACACTACAAATGCATAGCA+AGG 0.573032 1.1:+64986726 None:intergenic
GTTAGACTTTCAATTAGCAA+TGG 0.573973 1.1:-64982856 MS.gene005567:CDS
AGGATCACATGCGAAAAGCA+GGG 0.574593 1.1:-64986476 MS.gene005567:CDS
AATGTCCGTGTCTGCACAAG+AGG 0.580785 1.1:-64982832 MS.gene005567:CDS
TATATCTAGCTTGAATCAGG+TGG 0.583989 1.1:-64985593 MS.gene005567:CDS
ATCCTGGCAGGATGCAGAAG+AGG 0.584528 1.1:+64986503 None:intergenic
ATGATGGAAGGGCTACTACT+GGG 0.595339 1.1:-64986428 MS.gene005567:CDS
GATGCAATTTGTGGGTGTGA+TGG 0.595466 1.1:-64986681 MS.gene005567:CDS
ATCCCTGTCACAGTTCATAG+AGG 0.596019 1.1:+64982905 None:intergenic
TGAAGTTTGACGGGGACCCG+TGG 0.597796 1.1:+64985011 None:intergenic
CCTCACACGAACGTAAGACC+TGG 0.598258 1.1:+64986326 None:intergenic
GTGTGAGGGAATATGATTCG+AGG 0.600035 1.1:-64986311 MS.gene005567:CDS
ATGCTGACGATGCAATTTGT+GGG 0.600261 1.1:-64986689 MS.gene005567:CDS
ACACTACAAATGCATAGCAA+GGG 0.601578 1.1:+64986727 None:intergenic
GTATTCTGTAGGACCACCAC+GGG 0.603546 1.1:-64985027 MS.gene005567:intron
TCTTGCTGGTGAACGTTGTG+AGG 0.603550 1.1:+64986158 None:intergenic
GCTGCAGGGGAAAGACTGAA+GGG 0.603589 1.1:-64982750 MS.gene005567:CDS
TCCTGGCAGGATGCAGAAGA+GGG 0.604747 1.1:+64986504 None:intergenic
AATCACCCGTGTTGGAAGGG+AGG 0.604837 1.1:-64982935 MS.gene005567:CDS
TAGCCAAAGCAAATTTCCCA+AGG 0.606062 1.1:-64986187 MS.gene005567:CDS
CGGGTCGAAGCTGCACATGT+TGG 0.607232 1.1:-64986633 MS.gene005567:CDS
AAGAGGGCAGTCCATTGACT+AGG 0.611405 1.1:+64986520 None:intergenic
CACTACAAATGCATAGCAAG+GGG 0.613137 1.1:+64986728 None:intergenic
TGGATATTCCTCGACCACCC+TGG 0.613801 1.1:+64986562 None:intergenic
TATGTCCTGGACTGTAGCTA+CGG 0.618293 1.1:+64986208 None:intergenic
AAGCTTATGTAGAAGCTGCA+GGG 0.619909 1.1:-64982764 MS.gene005567:CDS
AGCTTATGTAGAAGCTGCAG+GGG 0.620177 1.1:-64982763 MS.gene005567:CDS
CGTGACCCTTCTCATTATAG+GGG 0.621306 1.1:-64986267 MS.gene005567:CDS
GAGGGAATATGATTCGAGGC+GGG 0.630693 1.1:-64986307 MS.gene005567:CDS
GGAGACCTAGGCCTTGATTG+TGG 0.631250 1.1:+64986087 None:intergenic
ATTAAGCTGTAGTATTACAA+AGG 0.631925 1.1:+64982687 None:intergenic
GGATCACATGCGAAAAGCAG+GGG 0.632074 1.1:-64986475 MS.gene005567:CDS
AATGGATAACCTTATAATGG+AGG 0.633236 1.1:-64985617 MS.gene005567:CDS
CGACTCTTTGAAGTTTGACG+GGG 0.633789 1.1:+64985003 None:intergenic
ATATCTAGCTTGAATCAGGT+GGG 0.639643 1.1:-64985592 MS.gene005567:CDS
AGTTTGACGGGGACCCGTGG+TGG 0.643416 1.1:+64985014 None:intergenic
TGTATTCTGTAGGACCACCA+CGG 0.644372 1.1:-64985028 MS.gene005567:intron
TGAAGTGGAAGCCCTCATAG+AGG 0.645724 1.1:-64982796 MS.gene005567:CDS
CCTTCCATCATGAACAACCT+GGG 0.645797 1.1:+64986440 None:intergenic
CTGCAGGGGAAAGACTGAAG+GGG 0.653890 1.1:-64982749 MS.gene005567:CDS
TGCCTCTATGAACTGTGACA+GGG 0.664675 1.1:-64982907 MS.gene005567:CDS
AGCCAAAGCAAATTTCCCAA+GGG 0.667784 1.1:-64986186 MS.gene005567:CDS
CGATACAGTATTCACAACAA+TGG 0.667801 1.1:-64986585 MS.gene005567:CDS
TTGATCTAAAGGTTCCGCCA+AGG 0.670359 1.1:-64986752 MS.gene005567:CDS
TCTAGCTTGAATCAGGTGGG+TGG 0.677401 1.1:-64985589 MS.gene005567:CDS
TGGGTGGTTCTAATGAAACA+AGG 0.684472 1.1:-64985573 MS.gene005567:CDS
TGAGGGAATATGATTCGAGG+CGG 0.687368 1.1:-64986308 MS.gene005567:CDS
AGTATTCACAACAATGGCCA+GGG 0.697356 1.1:-64986579 MS.gene005567:CDS
ATTCACAACAATGGCCAGGG+TGG 0.724016 1.1:-64986576 MS.gene005567:CDS
ACTACAAATGCATAGCAAGG+GGG 0.768168 1.1:+64986729 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! GAATTTAGTTAGAATAATAA+GGG + chr1.1:64985411-64985430 None:intergenic 15.0%
!! TAATTAAACAAATAACATCA+TGG + chr1.1:64984217-64984236 None:intergenic 15.0%
!! TAATTTCAAAACTTAGTATT+TGG - chr1.1:64983760-64983779 MS.gene005567:intron 15.0%
!! TAGATGTAAAATTACATAAA+AGG + chr1.1:64985831-64985850 None:intergenic 15.0%
!! TTTATTATATAAATGAACTC+TGG + chr1.1:64985803-64985822 None:intergenic 15.0%
!!! ACATGAAAATTGATTTTTTT+AGG + chr1.1:64985722-64985741 None:intergenic 15.0%
!!! GTTTTTGTTCTTTATATTTT+AGG - chr1.1:64986416-64986435 MS.gene005567:CDS 15.0%
!!! TGCTTTTAATTCATTTAATT+CGG - chr1.1:64984065-64984084 MS.gene005567:intron 15.0%
!! AAACATTTGTTTATGAAGTA+TGG - chr1.1:64982770-64982789 MS.gene005567:CDS 20.0%
!! GGAATTTAGTTAGAATAATA+AGG + chr1.1:64985412-64985431 None:intergenic 20.0%
!! TGAATTGACTAAATCTTATT+TGG - chr1.1:64984376-64984395 MS.gene005567:intron 20.0%
!!! ATTGATTTTTTTAGGAACTA+TGG + chr1.1:64985714-64985733 None:intergenic 20.0%
!!! TTGATTTTTTTAGGAACTAT+GGG + chr1.1:64985713-64985732 None:intergenic 20.0%
!!! TTTTTAGATGTCATATTTAC+TGG - chr1.1:64986505-64986524 MS.gene005567:CDS 20.0%
! AAAGCAGAAAAGATAAAAGA+AGG + chr1.1:64984051-64984070 None:intergenic 25.0%
! AAGCAGAAAAGATAAAAGAA+GGG + chr1.1:64984050-64984069 None:intergenic 25.0%
! AATTCATTTAATTCGGTTGT+TGG - chr1.1:64984072-64984091 MS.gene005567:intron 25.0%
! ACAAATAACATCATGGAATA+TGG + chr1.1:64984210-64984229 None:intergenic 25.0%
! AGCTGAATAAAAAAAATCTC+AGG - chr1.1:64986130-64986149 MS.gene005567:CDS 25.0%
! ATGAGAATAGCATTCAAATA+TGG + chr1.1:64986486-64986505 None:intergenic 25.0%
! CATATAAAACAGTATTGTAG+AGG + chr1.1:64984868-64984887 None:intergenic 25.0%
! GAAAAATCAAAGTCTTACAT+TGG - chr1.1:64984939-64984958 MS.gene005567:intron 25.0%
! GAAATGAAAGAGAAGATTAA+GGG + chr1.1:64985442-64985461 None:intergenic 25.0%
! GCTGAATAAAAAAAATCTCA+GGG - chr1.1:64986131-64986150 MS.gene005567:CDS 25.0%
! GTTGATATTAGTACAAATAC+TGG - chr1.1:64984246-64984265 MS.gene005567:intron 25.0%
! TAGAATAATAAGGGTAAAAC+TGG + chr1.1:64985402-64985421 None:intergenic 25.0%
! TCTACTACCATACAAAATTA+AGG + chr1.1:64983736-64983755 None:intergenic 25.0%
! TGAAATGAAAGAGAAGATTA+AGG + chr1.1:64985443-64985462 None:intergenic 25.0%
! TTCGCAAAGAAAGAAAAAAT+GGG + chr1.1:64985598-64985617 None:intergenic 25.0%
!! AATGTTTAACTTCTCTTTCA+CGG + chr1.1:64982757-64982776 None:intergenic 25.0%
!! ATCAAACATTTACTCTAAGA+TGG - chr1.1:64984900-64984919 MS.gene005567:intron 25.0%
!! CTCTACAATACTGTTTTATA+TGG - chr1.1:64984866-64984885 MS.gene005567:intron 25.0%
!! GTAATGGTTTGTGTTTATTT+CGG - chr1.1:64983886-64983905 MS.gene005567:intron 25.0%
!! TAATACCATCTTGTGTTTTT+GGG + chr1.1:64985045-64985064 None:intergenic 25.0%
!! TTATTTCTCATCATTTCAAC+TGG + chr1.1:64986225-64986244 None:intergenic 25.0%
!! TTTCTAGTAATATTTGACGT+TGG - chr1.1:64983642-64983661 MS.gene005567:intron 25.0%
!!! GATATTCTAAAATACTGTTC+AGG + chr1.1:64984171-64984190 None:intergenic 25.0%
AAAAAACTCAATGCTCACAT+TGG - chr1.1:64985148-64985167 MS.gene005567:intron 30.0%
AACTTAGTTCATGGCTAATT+TGG + chr1.1:64985097-64985116 None:intergenic 30.0%
AAGATGGAGTGAAATAGTAT+TGG - chr1.1:64984916-64984935 MS.gene005567:intron 30.0%
AAGGATTGCTAATTTCATAG+AGG - chr1.1:64984005-64984024 MS.gene005567:intron 30.0%
AAGGCTTGAATAGAACTTAT+AGG - chr1.1:64985179-64985198 MS.gene005567:intron 30.0%
AAGTAGAGCTTATAAATCCT+TGG - chr1.1:64984977-64984996 MS.gene005567:CDS 30.0%
AAGTGTTATAGCATTCCATT+TGG - chr1.1:64984439-64984458 MS.gene005567:intron 30.0%
AATGGATAACCTTATAATGG+AGG - chr1.1:64983942-64983961 MS.gene005567:intron 30.0%
ACACTACTAAACTTAGTTCA+TGG + chr1.1:64985106-64985125 None:intergenic 30.0%
AGATGGAGTGAAATAGTATT+GGG - chr1.1:64984917-64984936 MS.gene005567:intron 30.0%
AGGATTTATAAGCTCTACTT+AGG + chr1.1:64984977-64984996 None:intergenic 30.0%
AGGCTTGAATAGAACTTATA+GGG - chr1.1:64985180-64985199 MS.gene005567:intron 30.0%
AGTCATATAAGGTAATACCA+GGG + chr1.1:64986059-64986078 None:intergenic 30.0%
ATAAAAAAAATCTCAGGGCA+AGG - chr1.1:64986136-64986155 MS.gene005567:CDS 30.0%
CAATTAGAGATCATACTCAT+GGG - chr1.1:64986531-64986550 MS.gene005567:CDS 30.0%
CAGAATGGATAACCTTATAA+TGG - chr1.1:64983939-64983958 MS.gene005567:intron 30.0%
CATTCTGTTTAACGTAAACA+CGG + chr1.1:64983926-64983945 None:intergenic 30.0%
CCATTACAATTTACAGCAAA+AGG + chr1.1:64983873-64983892 None:intergenic 30.0%
GAAAATAATTGGGATTGAGT+GGG + chr1.1:64985528-64985547 None:intergenic 30.0%
GAACTAAGTTTAGTAGTGTT+GGG - chr1.1:64985107-64985126 MS.gene005567:intron 30.0%
GATTGTTACTAGTAAAGATG+TGG - chr1.1:64983591-64983610 MS.gene005567:intron 30.0%
GGATATCCTATTTATAGTAG+AGG - chr1.1:64984800-64984819 MS.gene005567:intron 30.0%
GGTAAACCTCTACTATAAAT+AGG + chr1.1:64984809-64984828 None:intergenic 30.0%
GTAGCATGCTTATTATTACA+AGG + chr1.1:64986249-64986268 None:intergenic 30.0%
GTGTGACACTGAAAATAATT+GGG + chr1.1:64985538-64985557 None:intergenic 30.0%
GTTAGACTTTCAATTAGCAA+TGG - chr1.1:64986703-64986722 MS.gene005567:CDS 30.0%
GTTCGCAAAGAAAGAAAAAA+TGG + chr1.1:64985599-64985618 None:intergenic 30.0%
TAGATATAGCCTCCATTATA+AGG + chr1.1:64983954-64983973 None:intergenic 30.0%
TATGCTATCAAAAAGCTTGA+CGG - chr1.1:64983187-64983206 MS.gene005567:intron 30.0%
TATTGAATGAGATTGAAACG+TGG - chr1.1:64984779-64984798 MS.gene005567:intron 30.0%
TATTGTATGTTTGCATCAGA+TGG + chr1.1:64984659-64984678 None:intergenic 30.0%
TCAATTAGAGATCATACTCA+TGG - chr1.1:64986530-64986549 MS.gene005567:CDS 30.0%
TCTATCCTAGACACATTATT+GGG - chr1.1:64985068-64985087 MS.gene005567:intron 30.0%
TGAAAATAATTGGGATTGAG+TGG + chr1.1:64985529-64985548 None:intergenic 30.0%
TGAACTAAGTTTAGTAGTGT+TGG - chr1.1:64985106-64985125 MS.gene005567:intron 30.0%
TGTGTGACACTGAAAATAAT+TGG + chr1.1:64985539-64985558 None:intergenic 30.0%
TTACAATTTACAGCAAAAGG+AGG + chr1.1:64983870-64983889 None:intergenic 30.0%
TTACCAAATAAACCCAAACA+AGG + chr1.1:64983788-64983807 None:intergenic 30.0%
! CTAATACCATCTTGTGTTTT+TGG + chr1.1:64985046-64985065 None:intergenic 30.0%
! CTTTACATCCCATATCTTTT+GGG - chr1.1:64984832-64984851 MS.gene005567:intron 30.0%
! GAAGTGTTTGGTAAAATTAG+CGG + chr1.1:64985866-64985885 None:intergenic 30.0%
! GTTTATTTGGTAATTGGTAG+TGG - chr1.1:64983795-64983814 MS.gene005567:intron 30.0%
! GTTTGGGTTTATTTGGTAAT+TGG - chr1.1:64983789-64983808 MS.gene005567:intron 30.0%
! TAGTATTTGGTTCCTTGTTT+GGG - chr1.1:64983773-64983792 MS.gene005567:intron 30.0%
! TATTTCAGGTGAAAAAGTAC+AGG - chr1.1:64986564-64986583 MS.gene005567:CDS 30.0%
! TCTTACATTGGCTAGAAATA+AGG - chr1.1:64984951-64984970 MS.gene005567:intron 30.0%
! TCTTTACATCCCATATCTTT+TGG - chr1.1:64984831-64984850 MS.gene005567:intron 30.0%
! TTAGTATTTGGTTCCTTGTT+TGG - chr1.1:64983772-64983791 MS.gene005567:intron 30.0%
! TTTGGCTAATTTGTAGGTTT+GGG + chr1.1:64986036-64986055 None:intergenic 30.0%
!! CCTTTTGCTGTAAATTGTAA+TGG - chr1.1:64983870-64983889 MS.gene005567:intron 30.0%
!! TGATGGACCTTAATTTTGTA+TGG - chr1.1:64983726-64983745 MS.gene005567:intron 30.0%
!! TGGGTTGAGTTTTATATTTC+AGG - chr1.1:64986550-64986569 MS.gene005567:CDS 30.0%
AACACTACAAATGCATAGCA+AGG + chr1.1:64982836-64982855 None:intergenic 35.0%
AAGATATGGGATGTAAAGAC+AGG + chr1.1:64984830-64984849 None:intergenic 35.0%
AAGCCAAGATTTACCATCTT+TGG + chr1.1:64986846-64986865 None:intergenic 35.0%
AAGCTAGAAGCTCATTTATG+TGG + chr1.1:64985219-64985238 None:intergenic 35.0%
AATGCTAGAAGATGATGAAG+AGG + chr1.1:64985664-64985683 None:intergenic 35.0%
ACACTACAAATGCATAGCAA+GGG + chr1.1:64982835-64982854 None:intergenic 35.0%
ACTAGTAAAGATGTGGATGA+TGG - chr1.1:64983598-64983617 MS.gene005567:intron 35.0%
AGCCAAGATTTACCATCTTT+GGG + chr1.1:64986845-64986864 None:intergenic 35.0%
ATCCCAAAGATGGTAAATCT+TGG - chr1.1:64986840-64986859 MS.gene005567:CDS 35.0%
ATCTAGTGGAAAACTGATCA+AGG - chr1.1:64984605-64984624 MS.gene005567:intron 35.0%
CAGTCATATAAGGTAATACC+AGG + chr1.1:64986060-64986079 None:intergenic 35.0%
CGATACAGTATTCACAACAA+TGG - chr1.1:64982974-64982993 MS.gene005567:CDS 35.0%
CGTGTTTACGTTAAACAGAA+TGG - chr1.1:64983924-64983943 MS.gene005567:intron 35.0%
CTCTTTCATTTCACGTTTCT+GGG - chr1.1:64985450-64985469 MS.gene005567:intron 35.0%
CTTTATCAAGACCACAATCA+AGG - chr1.1:64983461-64983480 MS.gene005567:intron 35.0%
GACTGACATACAGTCATATA+AGG + chr1.1:64986070-64986089 None:intergenic 35.0%
GAGAAGATTAAGGGCAAAAA+TGG + chr1.1:64985433-64985452 None:intergenic 35.0%
GCTCTGTTTGGTAAAAATAG+CGG + chr1.1:64985959-64985978 None:intergenic 35.0%
GTCTATCCTAGACACATTAT+TGG - chr1.1:64985067-64985086 MS.gene005567:intron 35.0%
GTTATAGCATTCCATTTGGT+TGG - chr1.1:64984443-64984462 MS.gene005567:intron 35.0%
TAAAGAACAGGATCTAGATC+TGG + chr1.1:64983446-64983465 None:intergenic 35.0%
TAGAACTTATAGGGTCTGTT+TGG - chr1.1:64985189-64985208 MS.gene005567:intron 35.0%
TATAAGGTAATACCAGGGTT+TGG + chr1.1:64986054-64986073 None:intergenic 35.0%
TCTCTTTCATTTCACGTTTC+TGG - chr1.1:64985449-64985468 MS.gene005567:intron 35.0%
TGAAGATTGCCTAGACATTA+TGG + chr1.1:64985981-64986000 None:intergenic 35.0%
TGGCTGAGAAACACTTATTT+GGG - chr1.1:64983662-64983681 MS.gene005567:intron 35.0%
TTAGTTCATGGCTAATTTGG+TGG + chr1.1:64985094-64985113 None:intergenic 35.0%
TTCACCACTTTGTATTCTGT+AGG - chr1.1:64984521-64984540 MS.gene005567:intron 35.0%
TTCAGCTATTACTCCATATC+TGG + chr1.1:64986117-64986136 None:intergenic 35.0%
TTCTTCCCCTATAATGAGAA+GGG + chr1.1:64983300-64983319 None:intergenic 35.0%
TTGGCTGAGAAACACTTATT+TGG - chr1.1:64983661-64983680 MS.gene005567:intron 35.0%
! ATATCTAGCTTGAATCAGGT+GGG - chr1.1:64983967-64983986 MS.gene005567:intron 35.0%
! ATGGTTTGTGTTTATTTCGG+CGG - chr1.1:64983889-64983908 MS.gene005567:intron 35.0%
! CATAACTCGCATTGATCTAA+AGG - chr1.1:64982796-64982815 MS.gene005567:CDS 35.0%
! CTTTTATTACGCAGAGGTAA+TGG + chr1.1:64983496-64983515 None:intergenic 35.0%
! GATAAGCTAGTTGAAGTGTT+TGG + chr1.1:64985878-64985897 None:intergenic 35.0%
! GTTCCTTGTTTGGGTTTATT+TGG - chr1.1:64983782-64983801 MS.gene005567:intron 35.0%
! GTTTGGCTAATTTGTAGGTT+TGG + chr1.1:64986037-64986056 None:intergenic 35.0%
! TATATCTAGCTTGAATCAGG+TGG - chr1.1:64983966-64983985 MS.gene005567:intron 35.0%
! TCTATCCTATGGGTTAATGT+AGG - chr1.1:64984748-64984767 MS.gene005567:intron 35.0%
! TGTGATGGCTATGATTTTGA+TGG - chr1.1:64982893-64982912 MS.gene005567:CDS 35.0%
! TTGACAAAAGTAGCTCTGTT+TGG - chr1.1:64985263-64985282 MS.gene005567:intron 35.0%
! TTGGCTAATTTGTAGGTTTG+GGG + chr1.1:64986035-64986054 None:intergenic 35.0%
! TTGTGGTCTTGATAAAGAAC+AGG + chr1.1:64983458-64983477 None:intergenic 35.0%
! TTTTGTCCAATCACTAGTGT+GGG - chr1.1:64984708-64984727 MS.gene005567:intron 35.0%
! TTTTTGTCCAATCACTAGTG+TGG - chr1.1:64984707-64984726 MS.gene005567:intron 35.0%
!! ATCATCTTCTAGCATTGACA+AGG - chr1.1:64985668-64985687 MS.gene005567:intron 35.0%
!! ATTTTGATGGGTGCCAATTA+CGG - chr1.1:64982906-64982925 MS.gene005567:CDS 35.0%
!! GTGATGGCTATGATTTTGAT+GGG - chr1.1:64982894-64982913 MS.gene005567:CDS 35.0%
!! TAGAGAAGTATCCAACCAAA+TGG + chr1.1:64984457-64984476 None:intergenic 35.0%
!! TCATCTTCTAGCATTGACAA+GGG - chr1.1:64985669-64985688 MS.gene005567:intron 35.0%
AAAATCTCAGGGCAAGGATT+TGG - chr1.1:64986142-64986161 MS.gene005567:CDS 40.0%
AACCCACTCCCAAAAGATAT+GGG + chr1.1:64984843-64984862 None:intergenic 40.0%
AAGCTTATGTAGAAGCTGCA+GGG - chr1.1:64986795-64986814 MS.gene005567:CDS 40.0%
AAGGTCCATCAAATTCCTCA+AGG + chr1.1:64983717-64983736 None:intergenic 40.0%
AATAATTGGGATTGAGTGGG+TGG + chr1.1:64985525-64985544 None:intergenic 40.0%
AATGCTGACGATGCAATTTG+TGG - chr1.1:64982869-64982888 MS.gene005567:CDS 40.0%
ACTACAAATGCATAGCAAGG+GGG + chr1.1:64982833-64982852 None:intergenic 40.0%
AGCCAAAGCAAATTTCCCAA+GGG - chr1.1:64983373-64983392 MS.gene005567:intron 40.0%
AGTAACAATCAGAGCTTACC+TGG + chr1.1:64983581-64983600 None:intergenic 40.0%
AGTATTCACAACAATGGCCA+GGG - chr1.1:64982980-64982999 MS.gene005567:CDS 40.0%
ATGCTGACGATGCAATTTGT+GGG - chr1.1:64982870-64982889 MS.gene005567:CDS 40.0%
CAAACAGAGCCATAATGTCT+AGG - chr1.1:64985969-64985988 MS.gene005567:intron 40.0%
CAAGATGCACTAAGCTTTCA+AGG + chr1.1:64984295-64984314 None:intergenic 40.0%
CACAACTCACTCTATCCTAT+GGG - chr1.1:64984738-64984757 MS.gene005567:intron 40.0%
CACTACAAATGCATAGCAAG+GGG + chr1.1:64982834-64982853 None:intergenic 40.0%
CTATAAGCTCAAACGCTACT+TGG + chr1.1:64985356-64985375 None:intergenic 40.0%
CTTCTTCCCCTATAATGAGA+AGG + chr1.1:64983301-64983320 None:intergenic 40.0%
GAACGAGAAACTAATCTTGC+TGG + chr1.1:64983418-64983437 None:intergenic 40.0%
GAATATCGTGTCCTAGTCAA+TGG - chr1.1:64983028-64983047 MS.gene005567:intron 40.0%
TAGCCAAAGCAAATTTCCCA+AGG - chr1.1:64983372-64983391 MS.gene005567:intron 40.0%
TCACAACTCACTCTATCCTA+TGG - chr1.1:64984737-64984756 MS.gene005567:intron 40.0%
TCGTGACCCTTCTCATTATA+GGG - chr1.1:64983291-64983310 MS.gene005567:intron 40.0%
TCTCATCATTTCAACTGGAC+AGG + chr1.1:64986220-64986239 None:intergenic 40.0%
TGAGCAGAACTGTCTATGTT+GGG - chr1.1:64982714-64982733 MS.gene005567:CDS 40.0%
TGGTCCTACAGAATACAAAG+TGG + chr1.1:64984528-64984547 None:intergenic 40.0%
TGTATGTCAGTCTGAGTTTG+CGG - chr1.1:64986078-64986097 MS.gene005567:intron 40.0%
TTGAGCAGAACTGTCTATGT+TGG - chr1.1:64982713-64982732 MS.gene005567:CDS 40.0%
! AAGATGTGGATGATGGTTAG+TGG - chr1.1:64983605-64983624 MS.gene005567:intron 40.0%
! AATTTGCTTTGGCTATGTCC+TGG + chr1.1:64983367-64983386 None:intergenic 40.0%
! CTAGACATTATGGCTCTGTT+TGG + chr1.1:64985971-64985990 None:intergenic 40.0%
! GGCTATATCTAGCTTGAATC+AGG - chr1.1:64983963-64983982 MS.gene005567:intron 40.0%
! TACCCTTGGGAAATTTGCTT+TGG + chr1.1:64983378-64983397 None:intergenic 40.0%
! TTTTCCCAGGTTGTTCATGA+TGG - chr1.1:64983115-64983134 MS.gene005567:intron 40.0%
!! AGCGACTCTTTGAAGTTTGA+CGG + chr1.1:64984561-64984580 None:intergenic 40.0%
!! ATCCCATATCTTTTGGGAGT+GGG - chr1.1:64984838-64984857 MS.gene005567:intron 40.0%
!! TGGGTGGTTCTAATGAAACA+AGG - chr1.1:64983986-64984005 MS.gene005567:intron 40.0%
!! TTTTGATGGGTGCCAATTAC+GGG - chr1.1:64982907-64982926 MS.gene005567:CDS 40.0%
AAGGATCACATGCGAAAAGC+AGG - chr1.1:64983082-64983101 MS.gene005567:intron 45.0%
ACCTGGACAAACTCTTGCTA+CGG + chr1.1:64983564-64983583 None:intergenic 45.0%
ACGTTGTGAGGATTTACCCT+TGG + chr1.1:64983392-64983411 None:intergenic 45.0%
AGCTTATGTAGAAGCTGCAG+GGG - chr1.1:64986796-64986815 MS.gene005567:CDS 45.0%
AGGATCACATGCGAAAAGCA+GGG - chr1.1:64983083-64983102 MS.gene005567:intron 45.0%
AGTGGAAATTGGGCCAGATA+TGG - chr1.1:64986101-64986120 MS.gene005567:CDS 45.0%
ATCCCTGTCACAGTTCATAG+AGG + chr1.1:64986657-64986676 None:intergenic 45.0%
ATGCCTCTATGAACTGTGAC+AGG - chr1.1:64986651-64986670 MS.gene005567:CDS 45.0%
CAGTATTCACAACAATGGCC+AGG - chr1.1:64982979-64982998 MS.gene005567:CDS 45.0%
CCAAAGAAGAACGTGTGTGT+TGG - chr1.1:64985752-64985771 MS.gene005567:intron 45.0%
CCAACACACACGTTCTTCTT+TGG + chr1.1:64985755-64985774 None:intergenic 45.0%
CCTACAAATTAGCCAAACCC+TGG - chr1.1:64986039-64986058 MS.gene005567:intron 45.0%
CCTTCCATCATGAACAACCT+GGG + chr1.1:64983122-64983141 None:intergenic 45.0%
CGTGACCCTTCTCATTATAG+GGG - chr1.1:64983292-64983311 MS.gene005567:intron 45.0%
CGTTGTGAGGATTTACCCTT+GGG + chr1.1:64983391-64983410 None:intergenic 45.0%
CTCCACCAAACCAACTTCTA+AGG + chr1.1:64985012-64985031 None:intergenic 45.0%
CTGAAGTCTCTCACATCTAG+TGG - chr1.1:64984591-64984610 MS.gene005567:intron 45.0%
CTTAGTGCATCTTGAGCCTT+AGG - chr1.1:64984301-64984320 MS.gene005567:intron 45.0%
CTTTCTGGATATGCTGAGGT+AGG + chr1.1:64986596-64986615 None:intergenic 45.0%
GAACCCACTCCCAAAAGATA+TGG + chr1.1:64984844-64984863 None:intergenic 45.0%
GAAGCTTATGTAGAAGCTGC+AGG - chr1.1:64986794-64986813 MS.gene005567:CDS 45.0%
GACACGATATTCAGAGTGAC+TGG + chr1.1:64983020-64983039 None:intergenic 45.0%
GAGTTTGCGGAGTGGAAATT+GGG - chr1.1:64986091-64986110 MS.gene005567:intron 45.0%
GATGCAATTTGTGGGTGTGA+TGG - chr1.1:64982878-64982897 MS.gene005567:CDS 45.0%
GCAATCCTCACCTTAGAAGT+TGG - chr1.1:64984999-64985018 MS.gene005567:CDS 45.0%
GCATGTGATCCTTAAGATCC+TGG + chr1.1:64983075-64983094 None:intergenic 45.0%
GCTCACATTGGTGTGAGATA+AGG - chr1.1:64985160-64985179 MS.gene005567:intron 45.0%
GGATTTGGAGAGAGACTGAA+AGG - chr1.1:64986157-64986176 MS.gene005567:CDS 45.0%
GGGAGAAACAATCCCAAAGA+TGG - chr1.1:64986830-64986849 MS.gene005567:CDS 45.0%
GGTGATTGTCTTGCTCTTTC+TGG + chr1.1:64986611-64986630 None:intergenic 45.0%
GTCGTGACCCTTCTCATTAT+AGG - chr1.1:64983290-64983309 MS.gene005567:intron 45.0%
GTCTATGTTGGGAATCTACC+TGG - chr1.1:64982725-64982744 MS.gene005567:CDS 45.0%
GTGCTCCTACATTAACCCAT+AGG + chr1.1:64984756-64984775 None:intergenic 45.0%
GTGTGAGGGAATATGATTCG+AGG - chr1.1:64983248-64983267 MS.gene005567:intron 45.0%
TATGTCCTGGACTGTAGCTA+CGG + chr1.1:64983354-64983373 None:intergenic 45.0%
TCAGGCCCAAAAACACAAGA+TGG - chr1.1:64985037-64985056 MS.gene005567:intron 45.0%
TCAGGCCTTGAGGAATTTGA+TGG - chr1.1:64983709-64983728 MS.gene005567:intron 45.0%
TGAGGGAATATGATTCGAGG+CGG - chr1.1:64983251-64983270 MS.gene005567:intron 45.0%
TGAGTTTGCGGAGTGGAAAT+TGG - chr1.1:64986090-64986109 MS.gene005567:intron 45.0%
TGCCTCTATGAACTGTGACA+GGG - chr1.1:64986652-64986671 MS.gene005567:CDS 45.0%
TGCTCTTTCTGGATATGCTG+AGG + chr1.1:64986600-64986619 None:intergenic 45.0%
TGTATTCTGTAGGACCACCA+CGG - chr1.1:64984531-64984550 MS.gene005567:intron 45.0%
TTCTGCAGCTTCCTCTATGA+GGG + chr1.1:64986777-64986796 None:intergenic 45.0%
TTGATCTAAAGGTTCCGCCA+AGG - chr1.1:64982807-64982826 MS.gene005567:CDS 45.0%
! AGCGACATTTGAAGCACCTA+AGG + chr1.1:64984320-64984339 None:intergenic 45.0%
! ATGATGGAAGGGCTACTACT+GGG - chr1.1:64983131-64983150 MS.gene005567:intron 45.0%
! CCAGGGTTTGGCTAATTTGT+AGG + chr1.1:64986042-64986061 None:intergenic 45.0%
! CCAGGTTGTTCATGATGGAA+GGG - chr1.1:64983120-64983139 MS.gene005567:intron 45.0%
! CCTCACCTTAGAAGTTGGTT+TGG - chr1.1:64985004-64985023 MS.gene005567:CDS 45.0%
! TTGGGGCTTTTATTACGCAG+AGG + chr1.1:64983502-64983521 None:intergenic 45.0%
!! AAGACCTGGAAAAAGCGTTC+CGG + chr1.1:64983222-64983241 None:intergenic 45.0%
!! CACCTTAGAAGTTGGTTTGG+TGG - chr1.1:64985007-64985026 MS.gene005567:CDS 45.0%
!! CATCCCATATCTTTTGGGAG+TGG - chr1.1:64984837-64984856 MS.gene005567:intron 45.0%
!! CCAAACCAACTTCTAAGGTG+AGG + chr1.1:64985007-64985026 None:intergenic 45.0%
!! CGACTCTTTGAAGTTTGACG+GGG + chr1.1:64984559-64984578 None:intergenic 45.0%
!! CTGCTAGCACTGTGCTTTTT+GGG + chr1.1:64983520-64983539 None:intergenic 45.0%
!! GCGACTCTTTGAAGTTTGAC+GGG + chr1.1:64984560-64984579 None:intergenic 45.0%
!! TGCTAGCACTGTGCTTTTTG+GGG + chr1.1:64983519-64983538 None:intergenic 45.0%
!! TGGTTTGGTGGAGTTGAATC+AGG - chr1.1:64985019-64985038 MS.gene005567:CDS 45.0%
!! TGTTGCTTTGATACAGCTGC+TGG - chr1.1:64986293-64986312 MS.gene005567:CDS 45.0%
!! TTCTAAGGTGAGGATTGCCA+AGG + chr1.1:64984997-64985016 None:intergenic 45.0%
!!! GGTGCTTCAAATGTCGCTTT+TGG - chr1.1:64984322-64984341 MS.gene005567:intron 45.0%
!! TTATTTGTTTAATTATTATT+AGG - chr1.1:64984222-64984241 MS.gene005567:intron 5.0%
AAGGGCTACTACTGGGATTG+TGG - chr1.1:64983138-64983157 MS.gene005567:intron 50.0%
AATGTCCGTGTCTGCACAAG+AGG - chr1.1:64986727-64986746 MS.gene005567:CDS 50.0%
AGACAATCACCCGTGTTGGA+AGG - chr1.1:64986620-64986639 MS.gene005567:CDS 50.0%
AGCAAGACAATCACCCGTGT+TGG - chr1.1:64986616-64986635 MS.gene005567:CDS 50.0%
ATTCACAACAATGGCCAGGG+TGG - chr1.1:64982983-64983002 MS.gene005567:CDS 50.0%
ATTCTGCCTCCCTTCCAACA+CGG + chr1.1:64986633-64986652 None:intergenic 50.0%
CAAGACCACAATCAAGGCCT+AGG - chr1.1:64983467-64983486 MS.gene005567:intron 50.0%
CAGGTCTTACGTTCGTGTGA+GGG - chr1.1:64983234-64983253 MS.gene005567:intron 50.0%
CCCTTCCATCATGAACAACC+TGG + chr1.1:64983123-64983142 None:intergenic 50.0%
CTTCTGCAGCTTCCTCTATG+AGG + chr1.1:64986778-64986797 None:intergenic 50.0%
GACAATCACCCGTGTTGGAA+GGG - chr1.1:64986621-64986640 MS.gene005567:CDS 50.0%
GAGGGAATATGATTCGAGGC+GGG - chr1.1:64983252-64983271 MS.gene005567:intron 50.0%
GGATCACATGCGAAAAGCAG+GGG - chr1.1:64983084-64983103 MS.gene005567:intron 50.0%
GGCTTCCACTTCAGCAAATG+TGG + chr1.1:64986756-64986775 None:intergenic 50.0%
GGTGGCCCAATAATGTGTCT+AGG + chr1.1:64985076-64985095 None:intergenic 50.0%
GTATTCTGTAGGACCACCAC+GGG - chr1.1:64984532-64984551 MS.gene005567:intron 50.0%
GTGATCCTTAAGATCCTGGC+AGG + chr1.1:64983071-64983090 None:intergenic 50.0%
TCTCTTTCACGGATATCGCC+AGG + chr1.1:64982746-64982765 None:intergenic 50.0%
TCTTGCTGGTGAACGTTGTG+AGG + chr1.1:64983404-64983423 None:intergenic 50.0%
TGAAGTGGAAGCCCTCATAG+AGG - chr1.1:64986763-64986782 MS.gene005567:CDS 50.0%
TGCATCCTGCCAGGATCTTA+AGG - chr1.1:64983063-64983082 MS.gene005567:intron 50.0%
! AAGAGGGCAGTCCATTGACT+AGG + chr1.1:64983042-64983061 None:intergenic 50.0%
! ACAGCTGCTGGTTGTGAGTT+TGG - chr1.1:64986305-64986324 MS.gene005567:CDS 50.0%
! ACCTTGCAAGTCGCTTTGTG+GGG - chr1.1:64986000-64986019 MS.gene005567:intron 50.0%
! CACCTTGCAAGTCGCTTTGT+GGG - chr1.1:64985999-64986018 MS.gene005567:intron 50.0%
! CAGCTGCTGGTTGTGAGTTT+GGG - chr1.1:64986306-64986325 MS.gene005567:CDS 50.0%
! CATGATGGAAGGGCTACTAC+TGG - chr1.1:64983130-64983149 MS.gene005567:intron 50.0%
! CCAAAAAGCACAGTGCTAGC+AGG - chr1.1:64983518-64983537 MS.gene005567:intron 50.0%
! CCCAGGTTGTTCATGATGGA+AGG - chr1.1:64983119-64983138 MS.gene005567:intron 50.0%
! CCTGCTAGCACTGTGCTTTT+TGG + chr1.1:64983521-64983540 None:intergenic 50.0%
! TCACCTTGCAAGTCGCTTTG+TGG - chr1.1:64985998-64986017 MS.gene005567:intron 50.0%
! TCTAGCTTGAATCAGGTGGG+TGG - chr1.1:64983970-64983989 MS.gene005567:intron 50.0%
!! AGGGGATGTTTGCTTTTCCC+AGG - chr1.1:64983102-64983121 MS.gene005567:intron 50.0%
!!! AGTTCCGGAACGCTTTTTCC+AGG - chr1.1:64983215-64983234 MS.gene005567:intron 50.0%
AATCACCCGTGTTGGAAGGG+AGG - chr1.1:64986624-64986643 MS.gene005567:CDS 55.0%
AATGCATAGCAAGGGGGCCT+TGG + chr1.1:64982827-64982846 None:intergenic 55.0%
ACCCCACAAAGCGACTTGCA+AGG + chr1.1:64986004-64986023 None:intergenic 55.0%
AGCTGCAGGGGAAAGACTGA+AGG - chr1.1:64986808-64986827 MS.gene005567:CDS 55.0%
ATCCTGGCAGGATGCAGAAG+AGG + chr1.1:64983059-64983078 None:intergenic 55.0%
CCAGGTCTTACGTTCGTGTG+AGG - chr1.1:64983233-64983252 MS.gene005567:intron 55.0%
CCTCACACGAACGTAAGACC+TGG + chr1.1:64983236-64983255 None:intergenic 55.0%
CGTGCACCCACACTAGTGAT+TGG + chr1.1:64984717-64984736 None:intergenic 55.0%
CTGCAGGGGAAAGACTGAAG+GGG - chr1.1:64986810-64986829 MS.gene005567:CDS 55.0%
GCCGTAGCAAGAGTTTGTCC+AGG - chr1.1:64983560-64983579 MS.gene005567:intron 55.0%
GCTGCAGGGGAAAGACTGAA+GGG - chr1.1:64986809-64986828 MS.gene005567:CDS 55.0%
GGAGACCTAGGCCTTGATTG+TGG + chr1.1:64983475-64983494 None:intergenic 55.0%
GGGTTGAGACTTCTGCCTCT+GGG - chr1.1:64983682-64983701 MS.gene005567:intron 55.0%
GTCAGTCTGAGTTTGCGGAG+TGG - chr1.1:64986083-64986102 MS.gene005567:intron 55.0%
GTGCAGCTTCGACCCGTAAT+TGG + chr1.1:64982922-64982941 None:intergenic 55.0%
GTGCTAGCAGGAGTCCAAGT+AGG - chr1.1:64983530-64983549 MS.gene005567:intron 55.0%
TCCTGGCAGGATGCAGAAGA+GGG + chr1.1:64983058-64983077 None:intergenic 55.0%
TGGATATTCCTCGACCACCC+TGG + chr1.1:64983000-64983019 None:intergenic 55.0%
TTCTGCCTCCCTTCCAACAC+GGG + chr1.1:64986632-64986651 None:intergenic 55.0%
TTGGGATTGAGTGGGTGGAC+TGG + chr1.1:64985520-64985539 None:intergenic 55.0%
! AGGCGGGACTCTAGAAGTCT+TGG - chr1.1:64983268-64983287 MS.gene005567:intron 55.0%
! GGCAGCCACATTTGCTGAAG+TGG - chr1.1:64986748-64986767 MS.gene005567:CDS 55.0%
! TAGTAGTGTTGGGCGTGAGC+AGG - chr1.1:64985117-64985136 MS.gene005567:intron 55.0%
! TGCAAGTCGCTTTGTGGGGT+CGG - chr1.1:64986004-64986023 MS.gene005567:intron 55.0%
! TGGGTTGAGACTTCTGCCTC+TGG - chr1.1:64983681-64983700 MS.gene005567:intron 55.0%
!! AGCTTGACGGCTCTGAGTTC+CGG - chr1.1:64983200-64983219 MS.gene005567:intron 55.0%
!! CGCAGAGGTAATGGAGACCT+AGG + chr1.1:64983487-64983506 None:intergenic 55.0%
AACAATGGCCAGGGTGGTCG+AGG - chr1.1:64982989-64983008 MS.gene005567:CDS 60.0%
CGGGTCGAAGCTGCACATGT+TGG - chr1.1:64982926-64982945 MS.gene005567:CDS 60.0%
CTACGGCTCCTGCTCCTACT+TGG + chr1.1:64983547-64983566 None:intergenic 60.0%
CTGGACTGTAGCTACGGCTG+CGG + chr1.1:64983348-64983367 None:intergenic 60.0%
CTTCTGCCTCTGGGCATCTC+AGG - chr1.1:64983691-64983710 MS.gene005567:intron 60.0%
GAAGATATAGCCGCAGCCGC+AGG - chr1.1:64983317-64983336 MS.gene005567:intron 60.0%
GCAGGAGTCCAAGTAGGAGC+AGG - chr1.1:64983536-64983555 MS.gene005567:intron 60.0%
GGCTGCCTCTTGTGCAGACA+CGG + chr1.1:64986735-64986754 None:intergenic 60.0%
TCAAGGCCTGAGATGCCCAG+AGG + chr1.1:64983700-64983719 None:intergenic 60.0%
TCTGGGCATCTCAGGCCTTG+AGG - chr1.1:64983699-64983718 MS.gene005567:intron 60.0%
TGAAGTTTGACGGGGACCCG+TGG + chr1.1:64984551-64984570 None:intergenic 60.0%
! GCAAGTCGCTTTGTGGGGTC+GGG - chr1.1:64986005-64986024 MS.gene005567:intron 60.0%
!! GGATTGAGTGGGTGGACTGG+TGG + chr1.1:64985517-64985536 None:intergenic 60.0%
AGTTTGACGGGGACCCGTGG+TGG + chr1.1:64984548-64984567 None:intergenic 65.0%
CGCAGCCGTAGCTACAGTCC+AGG - chr1.1:64983346-64983365 MS.gene005567:intron 65.0%
GATATAGCCGCAGCCGCAGG+TGG - chr1.1:64983320-64983339 MS.gene005567:intron 65.0%
GCATAGCAAGGGGGCCTTGG+CGG + chr1.1:64982824-64982843 None:intergenic 65.0%
GCCCTCTTCTGCATCCTGCC+AGG - chr1.1:64983054-64983073 MS.gene005567:intron 65.0%
! GTCGCTTTGTGGGGTCGGGT+CGG - chr1.1:64986009-64986028 MS.gene005567:intron 65.0%
TACGGCTGCGGCTCCACCTG+CGG + chr1.1:64983336-64983355 None:intergenic 70.0%
TGCGGCTCCACCTGCGGCTG+CGG + chr1.1:64983330-64983349 None:intergenic 75.0%


Chromosome Type Strat End Strand Name
chr1.1 gene 64982701 64986880 64982701 ID=MS.gene005567
chr1.1 mRNA 64982701 64986880 64982701 ID=MS.gene005567.t1;Parent=MS.gene005567
chr1.1 exon 64986093 64986880 64986093 ID=MS.gene005567.t1.exon1;Parent=MS.gene005567.t1
chr1.1 CDS 64986093 64986880 64986093 ID=cds.MS.gene005567.t1;Parent=MS.gene005567.t1
chr1.1 exon 64985555 64985639 64985555 ID=MS.gene005567.t1.exon2;Parent=MS.gene005567.t1
chr1.1 CDS 64985555 64985639 64985555 ID=cds.MS.gene005567.t1;Parent=MS.gene005567.t1
chr1.1 exon 64984955 64985038 64984955 ID=MS.gene005567.t1.exon3;Parent=MS.gene005567.t1
chr1.1 CDS 64984955 64985038 64984955 ID=cds.MS.gene005567.t1;Parent=MS.gene005567.t1
chr1.1 exon 64982701 64983009 64982701 ID=MS.gene005567.t1.exon4;Parent=MS.gene005567.t1
chr1.1 CDS 64982701 64983009 64982701 ID=cds.MS.gene005567.t1;Parent=MS.gene005567.t1
Gene Sequence

>MS.gene005567

ATGAGTAGACATTTGAGCAGAACTGTCTATGTTGGGAATCTACCTGGCGATATCCGTGAAAGAGAAGTTAAACATTTGTTTATGAAGTATGGTCACATAACTCGCATTGATCTAAAGGTTCCGCCAAGGCCCCCTTGCTATGCATTTGTAGTGTTTAACGATGCTCTAAATGCTGACGATGCAATTTGTGGGTGTGATGGCTATGATTTTGATGGGTGCCAATTACGGGTCGAAGCTGCACATGTTGGTTATTGTAATTCATCTTCAAGAGATCGATACAGTATTCACAACAATGGCCAGGGTGGTCGAGGAATATCCAGTCACTCTGAATATCGTGTCCTAGTCAATGGACTGCCCTCTTCTGCATCCTGCCAGGATCTTAAGGATCACATGCGAAAAGCAGGGGATGTTTGCTTTTCCCAGGTTGTTCATGATGGAAGGGCTACTACTGGGATTGTGGATTACACGAACTGCGATGATATGAAATATGCTATCAAAAAGCTTGACGGCTCTGAGTTCCGGAACGCTTTTTCCAGGTCTTACGTTCGTGTGAGGGAATATGATTCGAGGCGGGACTCTAGAAGTCTTGGTCGTGACCCTTCTCATTATAGGGGAAGAAGATATAGCCGCAGCCGCAGGTGGAGCCGCAGCCGTAGCTACAGTCCAGGACATAGCCAAAGCAAATTTCCCAAGGGTAAATCCTCACAACGTTCACCAGCAAGATTAGTTTCTCGTTCTCGCTCCAGATCTAGATCCTGTTCTTTATCAAGACCACAATCAAGGCCTAGGTCTCCATTACCTCTGCGTAATAAAAGCCCCAAAAAGCACAGTGCTAGCAGGAGTCCAAGTAGGAGCAGGAGCCGTAGCAAGAGTTTGTCCAGGTAAGCTCTGATTGTTACTAGTAAAGATGTGGATGATGGTTAGTGGTTGCTACAAAGTTTTTTCTAGTAATATTTGACGTTGGCTGAGAAACACTTATTTGGGTTGAGACTTCTGCCTCTGGGCATCTCAGGCCTTGAGGAATTTGATGGACCTTAATTTTGTATGGTAGTAGACTGTTAATTTCAAAACTTAGTATTTGGTTCCTTGTTTGGGTTTATTTGGTAATTGGTAGTGGCTTTATTATATTATTATAAATAAAAATGTTTGTCACAAAAAAAGTTGTTCCTCCTTTTGCTGTAAATTGTAATGGTTTGTGTTTATTTCGGCGGTGTATGCTTAACCGTGTTTACGTTAAACAGAATGGATAACCTTATAATGGAGGCTATATCTAGCTTGAATCAGGTGGGTGGTTCTAATGAAACAAGGATTGCTAATTTCATAGAGGTATTATTCTGATTTCTAAGCCCTTCTTTTATCTTTTCTGCTTTTAATTCATTTAATTCGGTTGTTGGCATGCTGTAATTCTGACTTTATGATTGTAGATGTTACAACACATAATAAATATCACATAAAATCATTGTTCTACCTGAACAGTATTTTAGAATATCTTAGAAAATCTCTCGTCCATATTCCATGATGTTATTTGTTTAATTATTATTAGGAGTTGATATTAGTACAAATACTGGTTAGTACTTCGTCTGAGAGCGAGCCTTGAAAGCTTAGTGCATCTTGAGCCTTAGGTGCTTCAAATGTCGCTTTTGGTAAAATGTGATCTATGATGCTATTTCAACTTTGAATTGACTAAATCTTATTTGGTTAAGAAATGACATTATGTTGATTATTAGAATACTAACTTAAGTGTTATAGCATTCCATTTGGTTGGATACTTCTCTATTTTATAAAATTTTGTTTGTGTTAAACTTAAACATAAGTTGAATTTCACCACTTTGTATTCTGTAGGACCACCACGGGTCCCCGTCAAACTTCAAAGAGTCGCTGTCAGCAAGACTGAAGTCTCTCACATCTAGTGGAAAACTGATCAAGGTAACATGTTTCATTATGTCATAACTATTCCATCTGATGCAAACATACAATAAAAATTGTCATAAATGCATTTGTTTGTATTTTTGTCCAATCACTAGTGTGGGTGCACGTCACAACTCACTCTATCCTATGGGTTAATGTAGGAGCACAAATATTGAATGAGATTGAAACGTGGATATCCTATTTATAGTAGAGGTTTACCTGTCTTTACATCCCATATCTTTTGGGAGTGGGTTCTCCTCTACAATACTGTTTTATATGGACAAATACAAAATCAAACATTTACTCTAAGATGGAGTGAAATAGTATTGGGAAAAATCAAAGTCTTACATTGGCTAGAAATAAGGCCTAAGTAGAGCTTATAAATCCTTGGCAATCCTCACCTTAGAAGTTGGTTTGGTGGAGTTGAATCAGGCCCAAAAACACAAGATGGTATTAGTGTCTATCCTAGACACATTATTGGGCCACCAAATTAGCCATGAACTAAGTTTAGTAGTGTTGGGCGTGAGCAGGTGTATTAGAAAAAACTCAATGCTCACATTGGTGTGAGATAAGGCTTGAATAGAACTTATAGGGTCTGTTTGGTAAGCCACATAAATGAGCTTCTAGCTTCTAGCTTTTAGCTTATAAGCTCGTTTGACAAAAGTAGCTCTGTTTGGTAACACTTTTTTATTATGAGCTTATAGCTTTTTTCATGAGCTTATAAGCTATTTTTCAGAAGCTATTCCAAGTAGCGTTTGAGCTTATAGCTTATAGCTTCTCACTTTTATTTCCAGTTTTACCCTTATTATTCTAACTAAATTCCATTTTTGCCCTTAATCTTCTCTTTCATTTCACGTTTCTGGGTTGCTGTGTTTTTTGTTCATCTTTCATTTCACGCTTACTTTCCACCAGTCCACCCACTCAATCCCAATTATTTTCAGTGTCACACACAACATCAACTTCTTTTTTGATTGCTAGCTTTCTTTCCCATTTTTTCTTTCTTTGCGAACTTTTCAATCAAACTCATTAATGAAACAATACTGAGTTCTTCTCCTCTTCATCATCTTCTAGCATTGACAAGGGTAATACAAATTCAGCTCACCCATAGTTCCTAAAAAAATCAATTTTCATGTTTTATATGCTCCAAAGAAGAACGTGTGTGTTGGCAACACAAACACAGATGAAAATGAACCAGAGTTCATTTATATAATAAAAATGTCCTTTTATGTAATTTTACATCTATCAGCTATTGAACCGCTAATTTTACCAAACACTTCAACTAGCTTATCAGTCATCAGTCATCAGCTAGCATATCAGCTAAAAGCTATCAGCTAGCTTATCAGCTATCCGCTATTTTTACCAAACAGAGCCATAATGTCTAGGCAATCTTCACCTTGCAAGTCGCTTTGTGGGGTCGGGTCGGCCCCAAACCTACAAATTAGCCAAACCCTGGTATTACCTTATATGACTGTATGTCAGTCTGAGTTTGCGGAGTGGAAATTGGGCCAGATATGGAGTAATAGCTGAATAAAAAAAATCTCAGGGCAAGGATTTGGAGAGAGACTGAAAGGAAAAATGAAAGATGTTGAGTTAAAATGAAAATAGTGACCTGTCCAGTTGAAATGATGAGAAATAATCCTTGTAATAATAAGCATGCTACTTGTTTTACTCTATTATCTGTATTTGTTGCTTTGATACAGCTGCTGGTTGTGAGTTTGGGCTGAGATTCTAGTATATAGTATACAACTCTACATTTTTTAGTGTAGACTTAGAAAAAATTAGTATTTTCTGATGTGAATCAAAAATAGTTTTTGTTCTTTATATTTTAGGAATCAATATTTTTTCTTGATTTAGTGTTGTACATTTATTGTGAGCCATATTTGAATGCTATTCTCATTTTTAGATGTCATATTTACTGGTTTCAATTAGAGATCATACTCATGGGTTGAGTTTTATATTTCAGGTGAAAAAGTACAGGATTGCGCCTACCTCAGCATATCCAGAAAGAGCAAGACAATCACCCGTGTTGGAAGGGAGGCAGAATGCCTCTATGAACTGTGACAGGGATTTGAGCTATAGCCTTACACAGTCTGAGTTAGACTTTCAATTAGCAATGGTAATGTCCGTGTCTGCACAAGAGGCAGCCACATTTGCTGAAGTGGAAGCCCTCATAGAGGAAGCTGCAGAAGCTTATGTAGAAGCTGCAGGGGAAAGACTGAAGGGGAGAAACAATCCCAAAGATGGTAAATCTTGGCTTTTCCTTCCTTTGTAA
Protein sequence

>MS.gene005567.t1

MSRHLSRTVYVGNLPGDIREREVKHLFMKYGHITRIDLKVPPRPPCYAFVVFNDALNADDAICGCDGYDFDGCQLRVEAAHVGYCNSSSRDRYSIHNNGQGGRGISSHSEYRVLVNGLPSSASCQDLKDHMRKAGDVCFSQVVHDGRATTGIVDYTNCDDMKYAIKKLDGSEFRNAFSRSYVRVREYDSRRDSRSLGRDPSHYRGRRYSRSRRWSRSRSYSPGHSQSKFPKGKSSQRSPARLVSRSRSRSRSCSLSRPQSRPRMDNLIMEAISSLNQVGGSNETRIANFIEDHHGSPSNFKESLSARLKSLTSSGKLIKVKKYRIAPTSAYPERARQSPVLEGRQNASMNCDRDLSYSLTQSELDFQLAMVMSVSAQEAATFAEVEALIEEAAEAYVEAAGERLKGRNNPKDGKSWLFLPL