Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene40409.t1 | XP_013449731.1 | 94.4 | 303 | 9 | 2 | 1 | 303 | 1 | 295 | 1.30E-127 | 466.1 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene40409.t1 | A0A072U227 | 94.4 | 303 | 9 | 2 | 1 | 303 | 1 | 295 | 9.4e-128 | 466.1 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049190 | MS.gene40409 | 0.820877 | 5.44E-53 | -1.69E-46 |
| MS.gene049328 | MS.gene40409 | 0.822461 | 2.34E-53 | -1.69E-46 |
| MS.gene049418 | MS.gene40409 | 0.807895 | 4.04E-50 | -1.69E-46 |
| MS.gene049441 | MS.gene40409 | 0.802228 | 6.20E-49 | -1.69E-46 |
| MS.gene050310 | MS.gene40409 | 0.827939 | 1.19E-54 | -1.69E-46 |
| MS.gene050630 | MS.gene40409 | 0.814439 | 1.54E-51 | -1.69E-46 |
| MS.gene050648 | MS.gene40409 | 0.818743 | 1.67E-52 | -1.69E-46 |
| MS.gene050901 | MS.gene40409 | 0.822116 | 2.81E-53 | -1.69E-46 |
| MS.gene05092 | MS.gene40409 | 0.814625 | 1.40E-51 | -1.69E-46 |
| MS.gene051018 | MS.gene40409 | 0.826245 | 3.02E-54 | -1.69E-46 |
| MS.gene051021 | MS.gene40409 | 0.842087 | 3.20E-58 | -1.69E-46 |
| MS.gene051247 | MS.gene40409 | 0.801864 | 7.36E-49 | -1.69E-46 |
| MS.gene051263 | MS.gene40409 | 0.805233 | 1.47E-49 | -1.69E-46 |
| MS.gene051478 | MS.gene40409 | 0.803164 | 3.97E-49 | -1.69E-46 |
| MS.gene05157 | MS.gene40409 | 0.840064 | 1.09E-57 | -1.69E-46 |
| MS.gene051664 | MS.gene40409 | 0.807307 | 5.39E-50 | -1.69E-46 |
| MS.gene051671 | MS.gene40409 | 0.822319 | 2.52E-53 | -1.69E-46 |
| MS.gene051719 | MS.gene40409 | 0.841401 | 4.86E-58 | -1.69E-46 |
| MS.gene051720 | MS.gene40409 | 0.844617 | 6.76E-59 | -1.69E-46 |
| MS.gene051744 | MS.gene40409 | 0.819887 | 9.17E-53 | -1.69E-46 |
| MS.gene052032 | MS.gene40409 | 0.80606 | 9.88E-50 | -1.69E-46 |
| MS.gene052133 | MS.gene40409 | 0.809989 | 1.44E-50 | -1.69E-46 |
| MS.gene052731 | MS.gene40409 | 0.813447 | 2.55E-51 | -1.69E-46 |
| MS.gene052732 | MS.gene40409 | 0.851499 | 8.53E-61 | -1.69E-46 |
| MS.gene053122 | MS.gene40409 | 0.806578 | 7.68E-50 | -1.69E-46 |
| MS.gene053144 | MS.gene40409 | 0.867377 | 1.43E-65 | -1.69E-46 |
| MS.gene053171 | MS.gene40409 | 0.806672 | 7.34E-50 | -1.69E-46 |
| MS.gene053174 | MS.gene40409 | 0.810787 | 9.69E-51 | -1.69E-46 |
| MS.gene053536 | MS.gene40409 | 0.805949 | 1.04E-49 | -1.69E-46 |
| MS.gene053538 | MS.gene40409 | 0.809089 | 2.25E-50 | -1.69E-46 |
| MS.gene054550 | MS.gene40409 | 0.814928 | 1.20E-51 | -1.69E-46 |
| MS.gene054584 | MS.gene40409 | 0.869805 | 2.35E-66 | -1.69E-46 |
| MS.gene055465 | MS.gene40409 | 0.852581 | 4.20E-61 | -1.69E-46 |
| MS.gene055466 | MS.gene40409 | 0.840373 | 9.04E-58 | -1.69E-46 |
| MS.gene055468 | MS.gene40409 | 0.835386 | 1.73E-56 | -1.69E-46 |
| MS.gene055469 | MS.gene40409 | 0.812248 | 4.67E-51 | -1.69E-46 |
| MS.gene055537 | MS.gene40409 | 0.85789 | 1.20E-62 | -1.69E-46 |
| MS.gene055580 | MS.gene40409 | -0.833243 | 5.96E-56 | -1.69E-46 |
| MS.gene055764 | MS.gene40409 | 0.8121 | 5.03E-51 | -1.69E-46 |
| MS.gene055781 | MS.gene40409 | 0.800325 | 1.52E-48 | -1.69E-46 |
| MS.gene055890 | MS.gene40409 | 0.823837 | 1.12E-53 | -1.69E-46 |
| MS.gene055891 | MS.gene40409 | 0.819838 | 9.41E-53 | -1.69E-46 |
| MS.gene056043 | MS.gene40409 | -0.802594 | 5.21E-49 | -1.69E-46 |
| MS.gene056169 | MS.gene40409 | 0.84636 | 2.28E-59 | -1.69E-46 |
| MS.gene056228 | MS.gene40409 | 0.833902 | 4.08E-56 | -1.69E-46 |
| MS.gene057004 | MS.gene40409 | 0.815255 | 1.02E-51 | -1.69E-46 |
| MS.gene058087 | MS.gene40409 | 0.812103 | 5.02E-51 | -1.69E-46 |
| MS.gene058197 | MS.gene40409 | 0.821657 | 3.59E-53 | -1.69E-46 |
| MS.gene058198 | MS.gene40409 | 0.820773 | 5.75E-53 | -1.69E-46 |
| MS.gene058668 | MS.gene40409 | 0.801953 | 7.06E-49 | -1.69E-46 |
| MS.gene05894 | MS.gene40409 | 0.811109 | 8.25E-51 | -1.69E-46 |
| MS.gene059015 | MS.gene40409 | 0.802719 | 4.91E-49 | -1.69E-46 |
| MS.gene059300 | MS.gene40409 | 0.837595 | 4.74E-57 | -1.69E-46 |
| MS.gene059424 | MS.gene40409 | 0.801282 | 9.69E-49 | -1.69E-46 |
| MS.gene059625 | MS.gene40409 | 0.823957 | 1.05E-53 | -1.69E-46 |
| MS.gene060519 | MS.gene40409 | 0.837841 | 4.10E-57 | -1.69E-46 |
| MS.gene06057 | MS.gene40409 | 0.825614 | 4.26E-54 | -1.69E-46 |
| MS.gene060587 | MS.gene40409 | 0.833629 | 4.78E-56 | -1.69E-46 |
| MS.gene060886 | MS.gene40409 | 0.800388 | 1.48E-48 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene40409.t1 | MTR_7g094870 | 94.822 | 309 | 8 | 2 | 1 | 309 | 1 | 301 | 0.0 | 589 |
| MS.gene40409.t1 | MTR_8g005120 | 48.837 | 129 | 64 | 1 | 166 | 292 | 169 | 297 | 4.20e-30 | 117 |
| MS.gene40409.t1 | MTR_7g074150 | 34.842 | 221 | 121 | 5 | 73 | 288 | 149 | 351 | 8.11e-29 | 114 |
| MS.gene40409.t1 | MTR_3g062850 | 35.317 | 252 | 123 | 8 | 57 | 293 | 149 | 375 | 9.08e-26 | 106 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene40409.t1 | AT4G02800 | 55.108 | 323 | 130 | 6 | 1 | 312 | 1 | 319 | 1.73e-102 | 303 |
| MS.gene40409.t1 | AT5G01970 | 33.455 | 275 | 158 | 6 | 26 | 283 | 39 | 305 | 7.15e-33 | 124 |
| MS.gene40409.t1 | AT5G01970 | 37.441 | 211 | 120 | 4 | 77 | 283 | 6 | 208 | 9.32e-33 | 122 |
| MS.gene40409.t1 | AT1G30050 | 55.556 | 108 | 47 | 1 | 168 | 274 | 183 | 290 | 6.67e-31 | 120 |
| MS.gene40409.t1 | AT2G30530 | 53.271 | 107 | 50 | 0 | 168 | 274 | 226 | 332 | 4.06e-23 | 98.6 |
Find 60 sgRNAs with CRISPR-Local
Find 98 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTGTAATGAATCTGAGATTT+TGG | 0.065777 | 7.2:-14780496 | None:intergenic |
| ACAGAGTCACAAACAGAAAA+TGG | 0.225910 | 7.2:+14781252 | MS.gene40409:CDS |
| CTTCAGCTGGAAGCACTTCT+TGG | 0.294756 | 7.2:+14782103 | MS.gene40409:CDS |
| CTATAGGGTGCAAGAGAATT+GGG | 0.321673 | 7.2:+14781081 | MS.gene40409:intron |
| TCTATAGGGTGCAAGAGAAT+TGG | 0.332933 | 7.2:+14781080 | MS.gene40409:intron |
| TAATTTGGACAATGCCTTGC+TGG | 0.350274 | 7.2:+14780608 | MS.gene40409:CDS |
| CATCTTCCGATAAACGCTTC+TGG | 0.357963 | 7.2:+14780424 | MS.gene40409:CDS |
| CGAAACCGTCACGCAATCTT+CGG | 0.399997 | 7.2:-14781537 | None:intergenic |
| GATTCGTTGTTGCTCATAAG+AGG | 0.407447 | 7.2:+14780546 | MS.gene40409:CDS |
| TTGCGTGACGGTTTCGCTAA+AGG | 0.407989 | 7.2:+14781544 | MS.gene40409:CDS |
| CAGAGTCACAAACAGAAAAT+GGG | 0.420249 | 7.2:+14781253 | MS.gene40409:CDS |
| TTTGCAGATTGCAGTTTCAA+TGG | 0.433732 | 7.2:+14781420 | MS.gene40409:intron |
| TTCTCCTCTTCACATCAAAC+AGG | 0.442956 | 7.2:+14780272 | MS.gene40409:CDS |
| AGAAGCAGAGAAAGAGAAAG+AGG | 0.454038 | 7.2:+14781176 | MS.gene40409:CDS |
| TTCATCCCTTGTCTCTTCTC+CGG | 0.455453 | 7.2:-14782293 | None:intergenic |
| TCTCCACCACGATCAATTGC+CGG | 0.462348 | 7.2:+14782274 | MS.gene40409:CDS |
| CAGGCCTGAGGAAGATGATC+TGG | 0.475023 | 7.2:+14781570 | MS.gene40409:CDS |
| CCACCAGCTGGTGAAGGCAT+TGG | 0.478762 | 7.2:-14782174 | None:intergenic |
| TGAAAGAGGAAAACGATTGA+AGG | 0.478931 | 7.2:+14780521 | MS.gene40409:CDS |
| AGAAGTCCAAGCACATTCCT+TGG | 0.491643 | 7.2:-14782249 | None:intergenic |
| AGTGCTCCAGAAGCGTTTAT+CGG | 0.496763 | 7.2:-14780430 | None:intergenic |
| ACGGTTTCGCTAAAGGAGTC+AGG | 0.501339 | 7.2:+14781551 | MS.gene40409:CDS |
| GGTGTAGGTGAGGCTTCAGC+TGG | 0.502604 | 7.2:+14782090 | MS.gene40409:intron |
| CTTACCAGATCATCTTCCTC+AGG | 0.509130 | 7.2:-14781574 | None:intergenic |
| AATATATCAGTTAATGTGGG+TGG | 0.516844 | 7.2:-14781108 | None:intergenic |
| AAACCAATGCCTTCACCAGC+TGG | 0.518473 | 7.2:+14782171 | MS.gene40409:CDS |
| CAGAAGCGTTTATCGGAAGA+TGG | 0.528157 | 7.2:-14780423 | None:intergenic |
| GATTCATTACAGAATGAAAG+AGG | 0.535883 | 7.2:+14780507 | MS.gene40409:CDS |
| GGAAGCACTTCTTGGTGAGA+AGG | 0.546681 | 7.2:+14782111 | MS.gene40409:CDS |
| AGTCATCCAAGGAATGTGCT+TGG | 0.547639 | 7.2:+14782243 | MS.gene40409:CDS |
| TTTGAATATATCAGTTAATG+TGG | 0.556491 | 7.2:-14781112 | None:intergenic |
| AAAACCTGTTTGATGTGAAG+AGG | 0.562179 | 7.2:-14780276 | None:intergenic |
| TTGAATATATCAGTTAATGT+GGG | 0.565772 | 7.2:-14781111 | None:intergenic |
| AGTCAAAGCAAGGAGTAAAG+AGG | 0.574305 | 7.2:+14781199 | MS.gene40409:CDS |
| GAAGAGACAAGGGATGAAGA+TGG | 0.575725 | 7.2:+14782298 | MS.gene40409:CDS |
| ATTCGTTGTTGCTCATAAGA+GGG | 0.576596 | 7.2:+14780547 | MS.gene40409:CDS |
| TGTTTGATGTGAAGAGGAGA+AGG | 0.578043 | 7.2:-14780270 | None:intergenic |
| CAATTGCCGGAGAAGAGACA+AGG | 0.585854 | 7.2:+14782287 | MS.gene40409:CDS |
| AAACACCATGACAACCTCGT+TGG | 0.586010 | 7.2:+14780236 | None:intergenic |
| GATACTCCACCAGCTGGTGA+AGG | 0.606126 | 7.2:-14782180 | None:intergenic |
| TCTCCGGCAATTGATCGTGG+TGG | 0.606421 | 7.2:-14782277 | None:intergenic |
| TCTTCTCCGGCAATTGATCG+TGG | 0.606721 | 7.2:-14782280 | None:intergenic |
| TCATATGAGCAAGTCATCCA+AGG | 0.609790 | 7.2:+14782232 | MS.gene40409:CDS |
| TATAGGGTGCAAGAGAATTG+GGG | 0.610417 | 7.2:+14781082 | MS.gene40409:intron |
| AGAGTCACAAACAGAAAATG+GGG | 0.611613 | 7.2:+14781254 | MS.gene40409:CDS |
| CCAATGCCTTCACCAGCTGG+TGG | 0.614590 | 7.2:+14782174 | MS.gene40409:CDS |
| TGTGTCCAACGAGGTTGTCA+TGG | 0.617619 | 7.2:-14780241 | None:intergenic |
| GCTCATAAGAGGGTTTGACT+CGG | 0.617847 | 7.2:+14780557 | MS.gene40409:CDS |
| GAGAAAGAGGAGTCAAAGCA+AGG | 0.618162 | 7.2:+14781189 | MS.gene40409:CDS |
| CGCTAAAGGAGTCAGGCCTG+AGG | 0.629684 | 7.2:+14781558 | MS.gene40409:CDS |
| GTTGATGATACTCCACCAGC+TGG | 0.633667 | 7.2:-14782186 | None:intergenic |
| TGTAATACTACTTACCAGCA+AGG | 0.646639 | 7.2:-14780622 | None:intergenic |
| AATTGCCGGAGAAGAGACAA+GGG | 0.670922 | 7.2:+14782288 | MS.gene40409:CDS |
| TCGGAAGATGGAGTGAACTG+AGG | 0.679491 | 7.2:-14780411 | None:intergenic |
| GAGAACCGAAGATTGCGTGA+CGG | 0.684297 | 7.2:+14781532 | MS.gene40409:CDS |
| GAGTCACAAACAGAAAATGG+GGG | 0.707145 | 7.2:+14781255 | MS.gene40409:CDS |
| GAAGCGAGTCAATTCTACAA+CGG | 0.721187 | 7.2:-14780455 | None:intergenic |
| CTTGCTCATATGACTCAGAG+AGG | 0.724039 | 7.2:-14782222 | None:intergenic |
| AGGAGAAGCTGTGTCCAACG+AGG | 0.737241 | 7.2:-14780250 | None:intergenic |
| GACTCGCTTCTCGATAAACG+CGG | 0.746002 | 7.2:+14780468 | MS.gene40409:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAGTAAAACATTAATTAAT+TGG | - | chr7.2:14780680-14780699 | None:intergenic | 10.0% |
| !!! | ATTCAGATTATTTTTCTATA+GGG | + | chr7.2:14781066-14781085 | MS.gene40409:intron | 15.0% |
| !!! | TTTAGAATTTCATTGATTTT+AGG | + | chr7.2:14782011-14782030 | MS.gene40409:intron | 15.0% |
| !! | AATCTTAATCATATACCATA+TGG | + | chr7.2:14781607-14781626 | MS.gene40409:intron | 20.0% |
| !! | ACTAAAAAATCTACTTTATC+CGG | - | chr7.2:14781026-14781045 | None:intergenic | 20.0% |
| !! | ATTGTAATTAGACATTAGTT+AGG | + | chr7.2:14781725-14781744 | MS.gene40409:intron | 20.0% |
| !! | CATAATAATTTGAACAATTC+AGG | - | chr7.2:14782039-14782058 | None:intergenic | 20.0% |
| !! | CTGAATTGTTCAAATTATTA+TGG | + | chr7.2:14782037-14782056 | MS.gene40409:intron | 20.0% |
| !! | GAGTTATCTAGTTAAAAATT+TGG | + | chr7.2:14780947-14780966 | MS.gene40409:intron | 20.0% |
| !! | TACTAGTTAGTAGATTATAT+TGG | + | chr7.2:14781360-14781379 | MS.gene40409:intron | 20.0% |
| !! | TTGAATATATCAGTTAATGT+GGG | - | chr7.2:14781114-14781133 | None:intergenic | 20.0% |
| !! | TTTGAATATATCAGTTAATG+TGG | - | chr7.2:14781115-14781134 | None:intergenic | 20.0% |
| !!! | ATAGTGATGTTTTTTTTTAG+AGG | - | chr7.2:14780309-14780328 | None:intergenic | 20.0% |
| !!! | ATCTCTTTTGTCTAATAATT+TGG | + | chr7.2:14780593-14780612 | MS.gene40409:CDS | 20.0% |
| !!! | CATTCAGATTATTTTTCTAT+AGG | + | chr7.2:14781065-14781084 | MS.gene40409:intron | 20.0% |
| !!! | TTCAAATTCTTTTAACCATA+TGG | - | chr7.2:14781625-14781644 | None:intergenic | 20.0% |
| !!! | TTTTAACCATATCAAAAAAG+CGG | - | chr7.2:14780764-14780783 | None:intergenic | 20.0% |
| !!! | TTTTTCTTCTATATTTGAGA+CGG | - | chr7.2:14780913-14780932 | None:intergenic | 20.0% |
| ! | ATCAAGAAAGCAAAAAATGT+TGG | + | chr7.2:14781297-14781316 | MS.gene40409:intron | 25.0% |
| ! | ATTATGGAACTAATCTTATG+TGG | + | chr7.2:14782053-14782072 | MS.gene40409:intron | 25.0% |
| ! | TTCTTAAAACAATTGCATTG+AGG | - | chr7.2:14781844-14781863 | None:intergenic | 25.0% |
| !! | TGTTTTCGTTTTATAACAAC+AGG | + | chr7.2:14780359-14780378 | MS.gene40409:intron | 25.0% |
| !!! | ATGTTTTTTTTTAGAGGAAG+AGG | - | chr7.2:14780303-14780322 | None:intergenic | 25.0% |
| !!! | GAATCATTGTTGATAACAAT+AGG | + | chr7.2:14781868-14781887 | MS.gene40409:intron | 25.0% |
| !!! | TGTAATGAATCTGAGATTTT+GGG | - | chr7.2:14780498-14780517 | None:intergenic | 25.0% |
| !!! | TTTTTGTTTATATTCGAGAC+CGG | + | chr7.2:14781004-14781023 | MS.gene40409:intron | 25.0% |
| AACTAATCTTATGTGGATGA+TGG | + | chr7.2:14782060-14782079 | MS.gene40409:intron | 30.0% | |
| AATATATCAGTTAATGTGGG+TGG | - | chr7.2:14781111-14781130 | None:intergenic | 30.0% | |
| GATTCATTACAGAATGAAAG+AGG | + | chr7.2:14780507-14780526 | MS.gene40409:CDS | 30.0% | |
| TATTCTCTTTGAACAATTCC+AGG | - | chr7.2:14781964-14781983 | None:intergenic | 30.0% | |
| ! | CATCAGATTTGCATTTTCAT+TGG | - | chr7.2:14782146-14782165 | None:intergenic | 30.0% |
| ! | TGTTTTATGCAAGAAAGATG+TGG | + | chr7.2:14781496-14781515 | MS.gene40409:CDS | 30.0% |
| !! | CACAGTTTTTCTCTAGAAAT+TGG | + | chr7.2:14781775-14781794 | MS.gene40409:intron | 30.0% |
| !! | CTAGTACAATAGTTGATAAC+AGG | - | chr7.2:14781340-14781359 | None:intergenic | 30.0% |
| !! | CTGTAATGAATCTGAGATTT+TGG | - | chr7.2:14780499-14780518 | None:intergenic | 30.0% |
| !! | TTTTTCTCTAGAAATTGGAG+TGG | + | chr7.2:14781780-14781799 | MS.gene40409:intron | 30.0% |
| AAAACCTGTTTGATGTGAAG+AGG | - | chr7.2:14780279-14780298 | None:intergenic | 35.0% | |
| AACATCACTAACTCTTTCAC+AGG | - | chr7.2:14781654-14781673 | None:intergenic | 35.0% | |
| ACAGAGTCACAAACAGAAAA+TGG | + | chr7.2:14781252-14781271 | MS.gene40409:CDS | 35.0% | |
| AGAGTCACAAACAGAAAATG+GGG | + | chr7.2:14781254-14781273 | MS.gene40409:CDS | 35.0% | |
| ATTCGTTGTTGCTCATAAGA+GGG | + | chr7.2:14780547-14780566 | MS.gene40409:CDS | 35.0% | |
| ATTGGAGTGGTCTAGTTATT+TGG | + | chr7.2:14781793-14781812 | MS.gene40409:intron | 35.0% | |
| CAGAGTCACAAACAGAAAAT+GGG | + | chr7.2:14781253-14781272 | MS.gene40409:CDS | 35.0% | |
| TAACCATATCAAAAAAGCGG+TGG | - | chr7.2:14780761-14780780 | None:intergenic | 35.0% | |
| TGAAAGAGGAAAACGATTGA+AGG | + | chr7.2:14780521-14780540 | MS.gene40409:CDS | 35.0% | |
| TGTAATACTACTTACCAGCA+AGG | - | chr7.2:14780625-14780644 | None:intergenic | 35.0% | |
| TTTGCAGATTGCAGTTTCAA+TGG | + | chr7.2:14781420-14781439 | MS.gene40409:intron | 35.0% | |
| ! | TGTGTTGATCAATTTAGTCC+TGG | + | chr7.2:14781943-14781962 | MS.gene40409:intron | 35.0% |
| !!! | TAACCACCGCTTTTTTGATA+TGG | + | chr7.2:14780755-14780774 | MS.gene40409:intron | 35.0% |
| AGAAGCAGAGAAAGAGAAAG+AGG | + | chr7.2:14781176-14781195 | MS.gene40409:CDS | 40.0% | |
| AGTCAAAGCAAGGAGTAAAG+AGG | + | chr7.2:14781199-14781218 | MS.gene40409:CDS | 40.0% | |
| CTATAGGGTGCAAGAGAATT+GGG | + | chr7.2:14781081-14781100 | MS.gene40409:intron | 40.0% | |
| GAAGCGAGTCAATTCTACAA+CGG | - | chr7.2:14780458-14780477 | None:intergenic | 40.0% | |
| GAGTCACAAACAGAAAATGG+GGG | + | chr7.2:14781255-14781274 | MS.gene40409:CDS | 40.0% | |
| GATTCGTTGTTGCTCATAAG+AGG | + | chr7.2:14780546-14780565 | MS.gene40409:CDS | 40.0% | |
| TAATTTGGACAATGCCTTGC+TGG | + | chr7.2:14780608-14780627 | MS.gene40409:CDS | 40.0% | |
| TATAGGGTGCAAGAGAATTG+GGG | + | chr7.2:14781082-14781101 | MS.gene40409:intron | 40.0% | |
| TCATATGAGCAAGTCATCCA+AGG | + | chr7.2:14782232-14782251 | MS.gene40409:CDS | 40.0% | |
| TCTATAGGGTGCAAGAGAAT+TGG | + | chr7.2:14781080-14781099 | MS.gene40409:intron | 40.0% | |
| TGTTTGATGTGAAGAGGAGA+AGG | - | chr7.2:14780273-14780292 | None:intergenic | 40.0% | |
| TTCTCCTCTTCACATCAAAC+AGG | + | chr7.2:14780272-14780291 | MS.gene40409:CDS | 40.0% | |
| ! | TATGTGGATGATGGTTTGTG+TGG | + | chr7.2:14782069-14782088 | MS.gene40409:intron | 40.0% |
| AATTGCCGGAGAAGAGACAA+GGG | + | chr7.2:14782288-14782307 | MS.gene40409:CDS | 45.0% | |
| AGAAGTCCAAGCACATTCCT+TGG | - | chr7.2:14782252-14782271 | None:intergenic | 45.0% | |
| AGTCATCCAAGGAATGTGCT+TGG | + | chr7.2:14782243-14782262 | MS.gene40409:CDS | 45.0% | |
| CATCTTCCGATAAACGCTTC+TGG | + | chr7.2:14780424-14780443 | MS.gene40409:CDS | 45.0% | |
| CTGAGGAAGATGATCTGGTA+AGG | + | chr7.2:14781575-14781594 | MS.gene40409:intron | 45.0% | |
| CTTACCAGATCATCTTCCTC+AGG | - | chr7.2:14781577-14781596 | None:intergenic | 45.0% | |
| CTTGCTCATATGACTCAGAG+AGG | - | chr7.2:14782225-14782244 | None:intergenic | 45.0% | |
| GAAGAGACAAGGGATGAAGA+TGG | + | chr7.2:14782298-14782317 | MS.gene40409:CDS | 45.0% | |
| GAGAAAGAGGAGTCAAAGCA+AGG | + | chr7.2:14781189-14781208 | MS.gene40409:CDS | 45.0% | |
| GCTCATAAGAGGGTTTGACT+CGG | + | chr7.2:14780557-14780576 | MS.gene40409:CDS | 45.0% | |
| TTCATCCCTTGTCTCTTCTC+CGG | - | chr7.2:14782296-14782315 | None:intergenic | 45.0% | |
| ! | GATGATGGTTTGTGTGGTGT+AGG | + | chr7.2:14782075-14782094 | MS.gene40409:intron | 45.0% |
| !! | AGTGCTCCAGAAGCGTTTAT+CGG | - | chr7.2:14780433-14780452 | None:intergenic | 45.0% |
| !! | CAGAAGCGTTTATCGGAAGA+TGG | - | chr7.2:14780426-14780445 | None:intergenic | 45.0% |
| AAACCAATGCCTTCACCAGC+TGG | + | chr7.2:14782171-14782190 | MS.gene40409:CDS | 50.0% | |
| ACGGTTTCGCTAAAGGAGTC+AGG | + | chr7.2:14781551-14781570 | MS.gene40409:CDS | 50.0% | |
| CAATTGCCGGAGAAGAGACA+AGG | + | chr7.2:14782287-14782306 | MS.gene40409:CDS | 50.0% | |
| CGAAACCGTCACGCAATCTT+CGG | - | chr7.2:14781540-14781559 | None:intergenic | 50.0% | |
| GACTCGCTTCTCGATAAACG+CGG | + | chr7.2:14780468-14780487 | MS.gene40409:CDS | 50.0% | |
| GAGAACCGAAGATTGCGTGA+CGG | + | chr7.2:14781532-14781551 | MS.gene40409:CDS | 50.0% | |
| TCGGAAGATGGAGTGAACTG+AGG | - | chr7.2:14780414-14780433 | None:intergenic | 50.0% | |
| TCTCCACCACGATCAATTGC+CGG | + | chr7.2:14782274-14782293 | MS.gene40409:CDS | 50.0% | |
| TCTTCTCCGGCAATTGATCG+TGG | - | chr7.2:14782283-14782302 | None:intergenic | 50.0% | |
| TTGCGTGACGGTTTCGCTAA+AGG | + | chr7.2:14781544-14781563 | MS.gene40409:CDS | 50.0% | |
| ! | TGGTTTGTGTGGTGTAGGTG+AGG | + | chr7.2:14782080-14782099 | MS.gene40409:intron | 50.0% |
| !! | CTTCAGCTGGAAGCACTTCT+TGG | + | chr7.2:14782103-14782122 | MS.gene40409:CDS | 50.0% |
| !! | GGAAGCACTTCTTGGTGAGA+AGG | + | chr7.2:14782111-14782130 | MS.gene40409:CDS | 50.0% |
| !! | GTTGATGATACTCCACCAGC+TGG | - | chr7.2:14782189-14782208 | None:intergenic | 50.0% |
| AGGAGAAGCTGTGTCCAACG+AGG | - | chr7.2:14780253-14780272 | None:intergenic | 55.0% | |
| CAGGCCTGAGGAAGATGATC+TGG | + | chr7.2:14781570-14781589 | MS.gene40409:CDS | 55.0% | |
| GATACTCCACCAGCTGGTGA+AGG | - | chr7.2:14782183-14782202 | None:intergenic | 55.0% | |
| TCTCCGGCAATTGATCGTGG+TGG | - | chr7.2:14782280-14782299 | None:intergenic | 55.0% | |
| CCAATGCCTTCACCAGCTGG+TGG | + | chr7.2:14782174-14782193 | MS.gene40409:CDS | 60.0% | |
| CGCTAAAGGAGTCAGGCCTG+AGG | + | chr7.2:14781558-14781577 | MS.gene40409:CDS | 60.0% | |
| GGTGTAGGTGAGGCTTCAGC+TGG | + | chr7.2:14782090-14782109 | MS.gene40409:intron | 60.0% | |
| ! | CCACCAGCTGGTGAAGGCAT+TGG | - | chr7.2:14782177-14782196 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7.2 | gene | 14780243 | 14782342 | 14780243 | ID=MS.gene40409 |
| chr7.2 | mRNA | 14780243 | 14782342 | 14780243 | ID=MS.gene40409.t1;Parent=MS.gene40409 |
| chr7.2 | exon | 14780243 | 14780293 | 14780243 | ID=MS.gene40409.t1.exon1;Parent=MS.gene40409.t1 |
| chr7.2 | CDS | 14780243 | 14780293 | 14780243 | ID=cds.MS.gene40409.t1;Parent=MS.gene40409.t1 |
| chr7.2 | exon | 14780381 | 14780629 | 14780381 | ID=MS.gene40409.t1.exon2;Parent=MS.gene40409.t1 |
| chr7.2 | CDS | 14780381 | 14780629 | 14780381 | ID=cds.MS.gene40409.t1;Parent=MS.gene40409.t1 |
| chr7.2 | exon | 14781087 | 14781314 | 14781087 | ID=MS.gene40409.t1.exon3;Parent=MS.gene40409.t1 |
| chr7.2 | CDS | 14781087 | 14781314 | 14781087 | ID=cds.MS.gene40409.t1;Parent=MS.gene40409.t1 |
| chr7.2 | exon | 14781427 | 14781591 | 14781427 | ID=MS.gene40409.t1.exon4;Parent=MS.gene40409.t1 |
| chr7.2 | CDS | 14781427 | 14781591 | 14781427 | ID=cds.MS.gene40409.t1;Parent=MS.gene40409.t1 |
| chr7.2 | exon | 14782097 | 14782342 | 14782097 | ID=MS.gene40409.t1.exon5;Parent=MS.gene40409.t1 |
| chr7.2 | CDS | 14782097 | 14782342 | 14782097 | ID=cds.MS.gene40409.t1;Parent=MS.gene40409.t1 |
| Gene Sequence |
| Protein sequence |
