AlfalfaGEDB | MS.gene40409

M. sativa cultivar XinJiangDaYe / MS.gene40409

KEGG: -
GO: -
PFAM: -

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene40409.t1	XP_013449731.1	94.4	303	9	2	1	303	1	295	1.30E-127	466.1

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
No data available in table

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene40409.t1	A0A072U227	94.4	303	9	2	1	303	1	295	9.4e-128	466.1

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene049190	MS.gene40409	0.820877	5.44E-53	-1.69E-46
MS.gene049328	MS.gene40409	0.822461	2.34E-53	-1.69E-46
MS.gene049418	MS.gene40409	0.807895	4.04E-50	-1.69E-46
MS.gene049441	MS.gene40409	0.802228	6.20E-49	-1.69E-46
MS.gene050310	MS.gene40409	0.827939	1.19E-54	-1.69E-46
MS.gene050630	MS.gene40409	0.814439	1.54E-51	-1.69E-46
MS.gene050648	MS.gene40409	0.818743	1.67E-52	-1.69E-46
MS.gene050901	MS.gene40409	0.822116	2.81E-53	-1.69E-46
MS.gene05092	MS.gene40409	0.814625	1.40E-51	-1.69E-46
MS.gene051018	MS.gene40409	0.826245	3.02E-54	-1.69E-46

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PPI:

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene40409.t1	MTR_7g094870	94.822	309	8	2	1	309	1	301	0.0	589
MS.gene40409.t1	MTR_8g005120	48.837	129	64	1	166	292	169	297	4.20e-30	117
MS.gene40409.t1	MTR_7g074150	34.842	221	121	5	73	288	149	351	8.11e-29	114
MS.gene40409.t1	MTR_3g062850	35.317	252	123	8	57	293	149	375	9.08e-26	106

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene40409.t1	AT4G02800	55.108	323	130	6	1	312	1	319	1.73e-102	303
MS.gene40409.t1	AT5G01970	33.455	275	158	6	26	283	39	305	7.15e-33	124
MS.gene40409.t1	AT5G01970	37.441	211	120	4	77	283	6	208	9.32e-33	122
MS.gene40409.t1	AT1G30050	55.556	108	47	1	168	274	183	290	6.67e-31	120
MS.gene40409.t1	AT2G30530	53.271	107	50	0	168	274	226	332	4.06e-23	98.6

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Find 60 sgRNAs with CRISPR-Local

Find 98 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACCTGTTTGATGTGAAG+AGG	0.562179	7.2:-14780276	None:intergenic
AAACACCATGACAACCTCGT+TGG	0.586010	7.2:+14780236	None:intergenic
AAACCAATGCCTTCACCAGC+TGG	0.518473	7.2:+14782171	MS.gene40409:CDS
AATATATCAGTTAATGTGGG+TGG	0.516844	7.2:-14781108	None:intergenic
AATTGCCGGAGAAGAGACAA+GGG	0.670922	7.2:+14782288	MS.gene40409:CDS
ACAGAGTCACAAACAGAAAA+TGG	0.225910	7.2:+14781252	MS.gene40409:CDS
ACGGTTTCGCTAAAGGAGTC+AGG	0.501339	7.2:+14781551	MS.gene40409:CDS
AGAAGCAGAGAAAGAGAAAG+AGG	0.454038	7.2:+14781176	MS.gene40409:CDS
AGAAGTCCAAGCACATTCCT+TGG	0.491643	7.2:-14782249	None:intergenic
AGAGTCACAAACAGAAAATG+GGG	0.611613	7.2:+14781254	MS.gene40409:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AACTAATCTTATGTGGATGA+TGG	+	chr7.2:14782060-14782079	MS.gene40409:intron	30.0%
AATATATCAGTTAATGTGGG+TGG	-	chr7.2:14781111-14781130	None:intergenic	30.0%
GATTCATTACAGAATGAAAG+AGG	+	chr7.2:14780507-14780526	MS.gene40409:CDS	30.0%
TATTCTCTTTGAACAATTCC+AGG	-	chr7.2:14781964-14781983	None:intergenic	30.0%
AAAACCTGTTTGATGTGAAG+AGG	-	chr7.2:14780279-14780298	None:intergenic	35.0%
AACATCACTAACTCTTTCAC+AGG	-	chr7.2:14781654-14781673	None:intergenic	35.0%
ACAGAGTCACAAACAGAAAA+TGG	+	chr7.2:14781252-14781271	MS.gene40409:CDS	35.0%
AGAGTCACAAACAGAAAATG+GGG	+	chr7.2:14781254-14781273	MS.gene40409:CDS	35.0%
ATTCGTTGTTGCTCATAAGA+GGG	+	chr7.2:14780547-14780566	MS.gene40409:CDS	35.0%
ATTGGAGTGGTCTAGTTATT+TGG	+	chr7.2:14781793-14781812	MS.gene40409:intron	35.0%

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Chromosome	Type	Strat	End	Strand	Name
chr7.2	gene	14780243	14782342	14780243	ID=MS.gene40409
chr7.2	mRNA	14780243	14782342	14780243	ID=MS.gene40409.t1;Parent=MS.gene40409
chr7.2	exon	14780243	14780293	14780243	ID=MS.gene40409.t1.exon1;Parent=MS.gene40409.t1
chr7.2	CDS	14780243	14780293	14780243	ID=cds.MS.gene40409.t1;Parent=MS.gene40409.t1
chr7.2	exon	14780381	14780629	14780381	ID=MS.gene40409.t1.exon2;Parent=MS.gene40409.t1
chr7.2	CDS	14780381	14780629	14780381	ID=cds.MS.gene40409.t1;Parent=MS.gene40409.t1
chr7.2	exon	14781087	14781314	14781087	ID=MS.gene40409.t1.exon3;Parent=MS.gene40409.t1
chr7.2	CDS	14781087	14781314	14781087	ID=cds.MS.gene40409.t1;Parent=MS.gene40409.t1
chr7.2	exon	14781427	14781591	14781427	ID=MS.gene40409.t1.exon4;Parent=MS.gene40409.t1
chr7.2	CDS	14781427	14781591	14781427	ID=cds.MS.gene40409.t1;Parent=MS.gene40409.t1
chr7.2	exon	14782097	14782342	14782097	ID=MS.gene40409.t1.exon5;Parent=MS.gene40409.t1
chr7.2	CDS	14782097	14782342	14782097	ID=cds.MS.gene40409.t1;Parent=MS.gene40409.t1

Gene Sequence

>MS.gene40409

ATGACAACCTCGTTGGACACAGCTTCTCCTTCTCCTCTTCACATCAAACAGGTTTTTCCTCTTCCTCTAAAAAAAAACATCACTATTTTTTTATGTCTTGTGTCTGAAATTAACGTTGTTTTCGTTTTATAACAACAGGAAGATACAAACGTTGTTAATTCTTCTTCTCCTCAGTTCACTCCATCTTCCGATAAACGCTTCTGGAGCACTCTCCGTTGTAGAATTGACTCGCTTCTCGATAAACGCGGTCAACCCAAAATCTCAGATTCATTACAGAATGAAAGAGGAAAACGATTGAAGGAAGATTCGTTGTTGCTCATAAGAGGGTTTGACTCGGTTTCTAATACACTATCTCTTTTGTCTAATAATTTGGACAATGCCTTGCTGGTAAGTAGTATTACAATTTAATCTAGTGCTAATTAATGTTTTTAGATCCAATTAATTAATGTTTTACTTTATTAATTAATAGTACTAGTATAATCTAGTATTAATCTTTTAATCAATTTCGTTAATAACCACCGCTTTTTTGATATGGTTAAAAAAAATAAATAATCTAGTATTAATCTTGTTGAGAGAAATTTAATGTGCTGTTAATTTTTTTGAGTTTGAATGAGAAATCTGCAATATTAGATGCAACAGAAATTGAAATTGATTGCATGTTATTACTCCGTCTCAAATATAGAAGAAAAAAATCAAACAAAGTTGAGTTATCTAGTTAAAAATTTGGATCAAATCAAATACATCTACTTTATTATTATTTTTTTTTGTTTATATTCGAGACCGGATAAAGTAGATTTTTTAGTAGTACATTTAAATTCTAAACATTCAGATTATTTTTCTATAGGGTGCAAGAGAATTGGGGAATCCACCCACATTAACTGATATATTCAAAAGCAAAATTGATCAGTCAGAAAACAATGAAGAAGAGAATTCAGAAGCAGAGAAAGAGAAAGAGGAGTCAAAGCAAGGAGTAAAGAGGAAAATTGATGAATTCTATGAAGAAAATGTTACAGAGTCACAAACAGAAAATGGGGGAAAAATGCATGAAAAACATATCAAGAAAGCAAAAAATGTTGGTTCTTTGTTTTTTTTCTCCTGTTATCAACTATTGTACTAGTACTAGTTAGTAGATTATATTGGTACTGAAGTTTGTTGCTAATTGTAACTTGTTTTCATTTTTGCAGATTGCAGTTTCAATGGCAAGCAAAGCAGCTACACTTGCAAGAGAATTGAAGTCTCTTAAATCAGATTTATGTTTTATGCAAGAAAGATGTGGTCTGCTTGAAGAAGAGAACCGAAGATTGCGTGACGGTTTCGCTAAAGGAGTCAGGCCTGAGGAAGATGATCTGGTAAGGAATCAATTCAATCTTAATCATATACCATATGGTTAAAAGAATTTGAAAAAGTTCCTGTGAAAGAGTTAGTGATGTTATATCATTTTTGTATTTCTAATGTAACTAATATTGTTACATCTTTTACTTCATTGTAATTAGACATTAGTTAGGATTTGTTACATGTAAAGTTGAGTGAATCACAGTTTTTCTCTAGAAATTGGAGTGGTCTAGTTATTTGGTTCTTAATATTAGCATATCTTTGATCCTCAATGCAATTGTTTTAAGAAAAGAGAATCATTGTTGATAACAATAGGTCAATTCTTCAATTAGTTTCAATTCACATTAACATTATCATATTAGTCATTTTGTGTTGATCAATTTAGTCCTGGAATTGTTCAAAGAGAATAATGTATGTACTTCATTTCAAAAACTATTTTAGAATTTCATTGATTTTAGGAGCCTGAATTGTTCAAATTATTATGGAACTAATCTTATGTGGATGATGGTTTGTGTGGTGTAGGTGAGGCTTCAGCTGGAAGCACTTCTTGGTGAGAAGGCAAGACTAGCCAATGAAAATGCAAATCTGATGAGAGAAAACCAATGCCTTCACCAGCTGGTGGAGTATCATCAACATACTTCACAAGACCTCTCTGAGTCATATGAGCAAGTCATCCAAGGAATGTGCTTGGACTTCTCATCTCCACCACGATCAATTGCCGGAGAAGAGACAAGGGATGAAGATGGTGCTGATGATCATGAGAAATAG

Protein sequence

>MS.gene40409.t1

MTTSLDTASPSPLHIKQEDTNVVNSSSPQFTPSSDKRFWSTLRCRIDSLLDKRGQPKISDSLQNERGKRLKEDSLLLIRGFDSVSNTLSLLSNNLDNALLGARELGNPPTLTDIFKSKIDQSENNEEENSEAEKEKEESKQGVKRKIDEFYEENVTESQTENGGKMHEKHIKKAKNIAVSMASKAATLARELKSLKSDLCFMQERCGLLEEENRRLRDGFAKGVRPEEDDLVRLQLEALLGEKARLANENANLMRENQCLHQLVEYHQHTSQDLSESYEQVIQGMCLDFSSPPRSIAGEETRDEDGADDHEK