AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene87898

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene87898.t1 MTR_6g027590 97.458 354 9 0 1 354 1 354 0.0 721
MS.gene87898.t1 MTR_6g471010 94.915 354 18 0 1 354 1 354 0.0 711
MS.gene87898.t1 MTR_5g020810 36.286 350 204 4 2 346 413 748 2.46e-76 249
MS.gene87898.t1 MTR_3g118160 30.585 376 227 8 2 347 421 792 8.10e-46 167
MS.gene87898.t1 MTR_3g088380 31.799 239 126 4 3 234 11 219 2.39e-32 124
MS.gene87898.t1 MTR_3g088120 24.138 348 219 7 2 341 33 343 9.51e-31 120
MS.gene87898.t1 MTR_3g088120 25.763 295 179 6 2 288 33 295 3.54e-30 117
MS.gene87898.t1 MTR_4g102860 29.557 203 112 3 3 205 17 188 2.38e-23 99.4
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene87898.t1 AT5G27740 83.898 354 57 0 1 354 1 354 0.0 642
MS.gene87898.t1 AT1G21690 31.799 239 126 4 3 234 11 219 2.99e-31 121
MS.gene87898.t1 AT1G21690 31.799 239 126 4 3 234 11 219 3.80e-31 120
MS.gene87898.t1 AT1G21690 30.544 239 122 4 3 234 11 212 1.42e-28 113
MS.gene87898.t1 AT1G77470 27.236 246 147 4 3 247 41 255 3.37e-28 113
MS.gene87898.t1 AT1G21690 31.799 239 114 6 3 234 11 207 6.49e-28 111
MS.gene87898.t1 AT1G63160 28.571 203 114 3 3 205 17 188 4.17e-21 93.2

Find 76 sgRNAs with CRISPR-Local

Find 345 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCCAAGCGATGCAGGCTTTC+AGG 0.177682 6.1:+9833699 MS.gene87898:CDS
TAGAACATTGTCTAGGGTTT+TGG 0.211566 6.1:-9831811 None:intergenic
TCCTTCCTCATTGCAACATT+TGG 0.283181 6.1:+9836908 MS.gene87898:CDS
CAGCACCAGGTCCAAACATT+TGG 0.316754 6.1:-9832041 None:intergenic
GCAAGTCTCAAATGATAATA+TGG 0.323719 6.1:-9835143 None:intergenic
GCTCTTCTCCGCCAAATGTT+TGG 0.325475 6.1:+9832030 MS.gene87898:CDS
AAAGGGAAGAAAGGATTTAA+AGG 0.340018 6.1:+9833781 MS.gene87898:CDS
CTCTACATTGACAGCATTTG+TGG 0.349408 6.1:+9836862 MS.gene87898:intron
TGGAGTCATTTCAATATGAT+TGG 0.356473 6.1:-9833680 None:intergenic
TTCTACGGTCCTACAGGTTC+TGG 0.378912 6.1:+9831988 MS.gene87898:CDS
GGCGGAGAAGAGCCATGATT+AGG 0.386355 6.1:-9832020 None:intergenic
TTCAGGTGAAGGTGGAAAAT+AGG 0.393658 6.1:+9833286 MS.gene87898:intron
TTCCTTACCTGGTCTTCCCT+TGG 0.400437 6.1:-9834137 None:intergenic
TCCTGAAAGCCTGCATCGCT+TGG 0.402265 6.1:-9833700 None:intergenic
GCGGAGAAGAGCCATGATTA+GGG 0.410779 6.1:-9832019 None:intergenic
TTTACCTTCAAAATGATCTC+TGG 0.416432 6.1:-9835631 None:intergenic
TGAAGGAACAGAGCCCAAAA+AGG 0.416911 6.1:+9835386 MS.gene87898:CDS
TTCTTCCCTTTAGCATCAAT+AGG 0.419177 6.1:-9833769 None:intergenic
TTGCTGTTCTACGGTCCTAC+AGG 0.432685 6.1:+9831982 MS.gene87898:CDS
TCAAGAAATAATCAAAGAAA+TGG 0.433507 6.1:+9833735 MS.gene87898:CDS
AATAGACCTATTGATGCTAA+AGG 0.441862 6.1:+9833763 MS.gene87898:CDS
CAGTTCATTGGTAAGAAAGA+AGG 0.442426 6.1:+9835055 MS.gene87898:CDS
TTTGTAGATGCTCATGAACT+TGG 0.449160 6.1:-9836885 None:intergenic
CTCCGCCAAATGTTTGGACC+TGG 0.453363 6.1:+9832036 MS.gene87898:CDS
TGTCCTCATTTGCTGTTCTA+CGG 0.456032 6.1:+9831973 MS.gene87898:CDS
AGAGAGAAGAACGATGTTGT+GGG 0.456869 6.1:+9831773 None:intergenic
GGCTGCTTTATGAGCTATTG+AGG 0.464840 6.1:+9835732 MS.gene87898:CDS
AGAAATCAAATCGGAATTTG+AGG 0.467465 6.1:+9835116 MS.gene87898:CDS
TATTCGTACATTAAGACAAC+GGG 0.467729 6.1:-9834108 None:intergenic
ATAGACCTATTGATGCTAAA+GGG 0.470305 6.1:+9833764 MS.gene87898:CDS
GTTTGGACCTGGTGCTGAAA+AGG 0.486709 6.1:+9832047 MS.gene87898:CDS
TATAGGTTGTTTCAAGTTCG+TGG 0.487361 6.1:+9835574 MS.gene87898:intron
GGAAAATAGGACATGGAAAG+TGG 0.488544 6.1:+9833299 MS.gene87898:CDS
AAACAATTCCTCCAATGGAC+TGG 0.501237 6.1:+9835329 MS.gene87898:CDS
TGTGAACTAGAACATTGTCT+AGG 0.504995 6.1:-9831818 None:intergenic
ATTGTTTGCTTGTCAGTGAA+AGG 0.505282 6.1:-9835313 None:intergenic
GTTGGTGTTTCAGGTGAAGG+TGG 0.511764 6.1:+9833278 MS.gene87898:intron
GCTCTGTTCCTTCATTATGT+CGG 0.511967 6.1:-9835377 None:intergenic
AACAATTCCTCCAATGGACT+GGG 0.513038 6.1:+9835330 MS.gene87898:CDS
ATTGATGCTAAAGGGAAGAA+AGG 0.515065 6.1:+9833772 MS.gene87898:CDS
TGAAGCATGAAGTCTGCCAT+TGG 0.518329 6.1:+9835771 MS.gene87898:CDS
ATATATTCCTCCCAGTCCAT+TGG 0.519890 6.1:-9835340 None:intergenic
GAAGCATGAAGTCTGCCATT+GGG 0.521856 6.1:+9835772 MS.gene87898:CDS
TCATTGCAACATTTGGCTGA+AGG 0.524105 6.1:+9836915 MS.gene87898:CDS
GTGAACTAGAACATTGTCTA+GGG 0.525927 6.1:-9831817 None:intergenic
AGTTCATTGGTAAGAAAGAA+GGG 0.531136 6.1:+9835056 MS.gene87898:CDS
CACCAGGTCCAAACATTTGG+CGG 0.533440 6.1:-9832038 None:intergenic
CCTCATTGAACCAGGAACAT+AGG 0.533780 6.1:+9836021 MS.gene87898:intron
TGGCAAGAAAACCCTAATCA+TGG 0.537613 6.1:+9832008 MS.gene87898:CDS
GAAATGACTCCAAGCGATGC+AGG 0.544680 6.1:+9833691 MS.gene87898:CDS
TAGGATGCGCCTTGGACAGA+AGG 0.549273 6.1:+9836040 MS.gene87898:CDS
AATTGCATCCGACATAATGA+AGG 0.550631 6.1:+9835369 MS.gene87898:CDS
CAGGAACATAGGATGCGCCT+TGG 0.553627 6.1:+9836032 MS.gene87898:intron
GAGAGAGAAGAACGATGTTG+TGG 0.555979 6.1:+9831772 None:intergenic
GCCAAATGTTGCAATGAGGA+AGG 0.563630 6.1:-9836909 None:intergenic
TATTCCTCCCAGTCCATTGG+AGG 0.567731 6.1:-9835337 None:intergenic
AAATGCACCAAGGGAAGACC+AGG 0.569042 6.1:+9834130 MS.gene87898:CDS
CAAGCAAACAATTCCTCCAA+TGG 0.573213 6.1:+9835324 MS.gene87898:CDS
GTACATTAAGACAACGGGAG+CGG 0.575694 6.1:-9834103 None:intergenic
TGTACGAATAAATGCACCAA+GGG 0.576466 6.1:+9834121 MS.gene87898:CDS
ATTAAGACAACGGGAGCGGA+TGG 0.578928 6.1:-9834099 None:intergenic
ACATTCTCTCCGCAGAACGA+TGG 0.581717 6.1:+9834013 MS.gene87898:CDS
GGACCGTAGAACAGCAAATG+AGG 0.590501 6.1:-9831976 None:intergenic
GTATAGCAGAGAAATCAAAT+CGG 0.601405 6.1:+9835107 MS.gene87898:CDS
ACCTTCAAAATGATCTCTGG+AGG 0.601868 6.1:-9835628 None:intergenic
TGTATTTCTCCATCGTTCTG+CGG 0.603903 6.1:-9834022 None:intergenic
AGTACTTGTGCTCAATGATG+TGG 0.613767 6.1:+9833968 MS.gene87898:intron
ATCAAATCGGAATTTGAGGA+GGG 0.625589 6.1:+9835120 MS.gene87898:CDS
TTACATAATATGCTGCCCAA+TGG 0.630713 6.1:-9835787 None:intergenic
AATCAAATCGGAATTTGAGG+AGG 0.632114 6.1:+9835119 MS.gene87898:CDS
TTATTCGTACATTAAGACAA+CGG 0.642459 6.1:-9834109 None:intergenic
TTCAGCCAAATGTTGCAATG+AGG 0.665561 6.1:-9836913 None:intergenic
TGAAGGTGGAAAATAGGACA+TGG 0.666148 6.1:+9833292 MS.gene87898:CDS
AATTCCTCCAATGGACTGGG+AGG 0.671185 6.1:+9835333 MS.gene87898:CDS
GTGGAGCTTACTGTTGGACA+CGG 0.710106 6.1:-9835165 None:intergenic
ATGTACGAATAAATGCACCA+AGG 0.719845 6.1:+9834120 MS.gene87898:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTAAATTTTTTTTATTTTTT+TGG + chr6.1:9832107-9832126 MS.gene87898:intron 0.0%
!! TAAAGATTAATTCTTTAAAT+AGG + chr6.1:9836674-9836693 MS.gene87898:intron 10.0%
!! TATGTATAAGTTATTTATAT+AGG - chr6.1:9832611-9832630 None:intergenic 10.0%
!! TCAATAAAAAATATATGTAT+TGG - chr6.1:9834732-9834751 None:intergenic 10.0%
!! AGGTTTATAAAAAGTAAATA+AGG + chr6.1:9836545-9836564 MS.gene87898:intron 15.0%
!! CATTAGTAATAAAAGATTTA+AGG + chr6.1:9832955-9832974 MS.gene87898:intron 15.0%
!! GGTTTATAAAAAGTAAATAA+GGG + chr6.1:9836546-9836565 MS.gene87898:intron 15.0%
!!! TTTAACTTTTATTTTTCTTC+TGG + chr6.1:9834396-9834415 MS.gene87898:intron 15.0%
!! AAAAGTTAAAAACTTATGCA+AGG - chr6.1:9834386-9834405 None:intergenic 20.0%
!! AAATACTTTGATACTTATCA+GGG + chr6.1:9836330-9836349 MS.gene87898:intron 20.0%
!! AATAAGTTGTATATACAAAC+AGG + chr6.1:9832669-9832688 MS.gene87898:intron 20.0%
!! AATTGTAAATCAAATACAGT+AGG - chr6.1:9835883-9835902 None:intergenic 20.0%
!! ATAAGTTGTATATACAAACA+GGG + chr6.1:9832670-9832689 MS.gene87898:intron 20.0%
!! ATACAAAGTAGTTATAGATT+GGG + chr6.1:9836782-9836801 MS.gene87898:intron 20.0%
!! CATAAAATTTATCAACTTCA+AGG - chr6.1:9835469-9835488 None:intergenic 20.0%
!! TAGCAAGCAAAATAATAATA+AGG - chr6.1:9834292-9834311 None:intergenic 20.0%
!! TATACAAAGTAGTTATAGAT+TGG + chr6.1:9836781-9836800 MS.gene87898:intron 20.0%
!! TCAAGAAATAATCAAAGAAA+TGG + chr6.1:9833735-9833754 MS.gene87898:CDS 20.0%
!! TGAACATTCAATTTATAGAA+TGG - chr6.1:9834987-9835006 None:intergenic 20.0%
!! TTAATTCTTTAAATAGGTCT+TGG + chr6.1:9836680-9836699 MS.gene87898:intron 20.0%
!! TTCATCTTTACTAAATCTAT+GGG + chr6.1:9835003-9835022 MS.gene87898:intron 20.0%
!! TTGTATAAGAAACACAATTA+AGG - chr6.1:9831898-9831917 None:intergenic 20.0%
!! TTTATAAACATTGTGGATAT+GGG + chr6.1:9834799-9834818 MS.gene87898:intron 20.0%
!!! AAACTCTATAATCTCTTTTT+TGG - chr6.1:9836762-9836781 None:intergenic 20.0%
!!! ACAAATCTTAGAATTTTAGT+CGG - chr6.1:9833172-9833191 None:intergenic 20.0%
!!! ACATTCTTGTAATTTTTGTT+AGG + chr6.1:9831917-9831936 MS.gene87898:intron 20.0%
!!! ATTTTAATTTTGAAGTACTG+TGG + chr6.1:9833599-9833618 MS.gene87898:intron 20.0%
!!! CATTCTTGTAATTTTTGTTA+GGG + chr6.1:9831918-9831937 MS.gene87898:intron 20.0%
!!! CTTTTCAAAGATTTGTTTTA+TGG + chr6.1:9835234-9835253 MS.gene87898:intron 20.0%
!!! TGATAAGTATCAAAGTATTT+GGG - chr6.1:9836330-9836349 None:intergenic 20.0%
!!! TGTTTTCTTTATAAACATTG+TGG + chr6.1:9834792-9834811 MS.gene87898:intron 20.0%
!!! TTAATTTTGAAGAATGTAGT+TGG + chr6.1:9832879-9832898 MS.gene87898:intron 20.0%
!!! TTTATTTTGTATAAACCTGT+GGG + chr6.1:9836157-9836176 MS.gene87898:intron 20.0%
!!! TTTTTTTTTATTGCAGGTTT+CGG + chr6.1:9831942-9831961 MS.gene87898:intron 20.0%
! AAAAACTGAAGTAAGCTAAA+AGG - chr6.1:9833919-9833938 None:intergenic 25.0%
! AAAAGGATAAGAAAAAGGTA+AGG - chr6.1:9833902-9833921 None:intergenic 25.0%
! AAATGAAGAATACATGGTAA+TGG - chr6.1:9835967-9835986 None:intergenic 25.0%
! AACGACAACACAAAAATATA+AGG - chr6.1:9833355-9833374 None:intergenic 25.0%
! AAGCTAAAAGGATAAGAAAA+AGG - chr6.1:9833907-9833926 None:intergenic 25.0%
! AATTACGCATATACAATTCT+TGG - chr6.1:9834764-9834783 None:intergenic 25.0%
! ACGACAACACAAAAATATAA+GGG - chr6.1:9833354-9833373 None:intergenic 25.0%
! AGATATAAAATTTCCTTACC+TGG - chr6.1:9834151-9834170 None:intergenic 25.0%
! CAAATACTTTGATACTTATC+AGG + chr6.1:9836329-9836348 MS.gene87898:intron 25.0%
! CAAGCAAAATAATAATAAGG+AGG - chr6.1:9834289-9834308 None:intergenic 25.0%
! CAATGTAGAGAAGAAAAAAA+TGG - chr6.1:9836852-9836871 None:intergenic 25.0%
! CATATTAAATGATAAGCTTG+TGG - chr6.1:9835187-9835206 None:intergenic 25.0%
! CTAAATCAGTTAATATCAAC+AGG + chr6.1:9836525-9836544 MS.gene87898:intron 25.0%
! CTTTATAAACATTGTGGATA+TGG + chr6.1:9834798-9834817 MS.gene87898:intron 25.0%
! GTTCATCTTTACTAAATCTA+TGG + chr6.1:9835002-9835021 MS.gene87898:intron 25.0%
! TAAGTCTTAACAGAGAATAA+CGG - chr6.1:9834422-9834441 None:intergenic 25.0%
! TAGTGAAAGTAAAATGTGTT+AGG + chr6.1:9832764-9832783 MS.gene87898:intron 25.0%
! TAGTTATAGATTGGGATATA+AGG + chr6.1:9836790-9836809 MS.gene87898:intron 25.0%
! TATTCCTCACAAATTACTAA+GGG - chr6.1:9833435-9833454 None:intergenic 25.0%
! TCATCTTTACTAAATCTATG+GGG + chr6.1:9835004-9835023 MS.gene87898:intron 25.0%
! TGATATTTCATTTCAGAATC+TGG + chr6.1:9835824-9835843 MS.gene87898:intron 25.0%
! TGGAAAAAAAATACACAGTT+GGG + chr6.1:9832127-9832146 MS.gene87898:intron 25.0%
! TTAAAAACTAGCTATCAAAG+AGG - chr6.1:9836298-9836317 None:intergenic 25.0%
! TTATTCGTACATTAAGACAA+CGG - chr6.1:9834112-9834131 None:intergenic 25.0%
! TTATTCTCTGTTAAGACTTA+GGG + chr6.1:9834422-9834441 MS.gene87898:intron 25.0%
! TTGACAAATGTTAGTAACTT+AGG + chr6.1:9833862-9833881 MS.gene87898:intron 25.0%
! TTGGAAAAAAAATACACAGT+TGG + chr6.1:9832126-9832145 MS.gene87898:intron 25.0%
!! AAAAGGAATTTTCTTTGCTT+TGG + chr6.1:9834194-9834213 MS.gene87898:intron 25.0%
!! CTGATAAGTATCAAAGTATT+TGG - chr6.1:9836331-9836350 None:intergenic 25.0%
!! CTTTTATTACTAATGCAACA+GGG - chr6.1:9832950-9832969 None:intergenic 25.0%
!! TCTTTTATTACTAATGCAAC+AGG - chr6.1:9832951-9832970 None:intergenic 25.0%
!! TTAACTTTTACAGATAGTGA+CGG + chr6.1:9832793-9832812 MS.gene87898:intron 25.0%
!!! CAATTTTTTGAGATTTTGAG+CGG - chr6.1:9831850-9831869 None:intergenic 25.0%
!!! GTTTATTTTGTATAAACCTG+TGG + chr6.1:9836156-9836175 MS.gene87898:intron 25.0%
!!! TAGGGTTTTTTTTTTATTGC+AGG + chr6.1:9831936-9831955 MS.gene87898:intron 25.0%
!!! TCTTTGATAGCTAGTTTTTA+AGG + chr6.1:9836297-9836316 MS.gene87898:intron 25.0%
AAAACAGTGTTGTCAAATTG+CGG - chr6.1:9834636-9834655 None:intergenic 30.0%
AAACACACATATGTATCGTT+TGG + chr6.1:9833386-9833405 MS.gene87898:intron 30.0%
AAAGGGAAGAAAGGATTTAA+AGG + chr6.1:9833781-9833800 MS.gene87898:CDS 30.0%
AACAAAATCTCACTTCTCAA+AGG - chr6.1:9836422-9836441 None:intergenic 30.0%
AACACACATATGTATCGTTT+GGG + chr6.1:9833387-9833406 MS.gene87898:intron 30.0%
AACATTTGTCAAACAAACCA+AGG - chr6.1:9833854-9833873 None:intergenic 30.0%
AATAGACCTATTGATGCTAA+AGG + chr6.1:9833763-9833782 MS.gene87898:CDS 30.0%
AATGTGTTTATAGTAGCTGA+TGG + chr6.1:9833097-9833116 MS.gene87898:intron 30.0%
AGAAATCAAATCGGAATTTG+AGG + chr6.1:9835116-9835135 MS.gene87898:CDS 30.0%
AGTTCATTGGTAAGAAAGAA+GGG + chr6.1:9835056-9835075 MS.gene87898:CDS 30.0%
ATAGACCTATTGATGCTAAA+GGG + chr6.1:9833764-9833783 MS.gene87898:CDS 30.0%
ATGTGTTTATAGTAGCTGAT+GGG + chr6.1:9833098-9833117 MS.gene87898:intron 30.0%
ATTGGGATATAAGGTAGTAT+AGG + chr6.1:9836799-9836818 MS.gene87898:intron 30.0%
ATTTACTTCTGCTTACTTCT+TGG + chr6.1:9833218-9833237 MS.gene87898:intron 30.0%
CGAAATGCAAATCAAACTAT+TGG - chr6.1:9833526-9833545 None:intergenic 30.0%
CGCTCAAAATCTCAAAAAAT+TGG + chr6.1:9831848-9831867 MS.gene87898:CDS 30.0%
CTATTCCTCACAAATTACTA+AGG - chr6.1:9833436-9833455 None:intergenic 30.0%
GCAAGTCTCAAATGATAATA+TGG - chr6.1:9835146-9835165 None:intergenic 30.0%
GTATAGCAGAGAAATCAAAT+CGG + chr6.1:9835107-9835126 MS.gene87898:CDS 30.0%
GTTATTCTCTGTTAAGACTT+AGG + chr6.1:9834421-9834440 MS.gene87898:intron 30.0%
GTTGCATTATTTAAGTCGTT+TGG + chr6.1:9836267-9836286 MS.gene87898:intron 30.0%
TAAAATAGTGTCCATTGACA+TGG - chr6.1:9834932-9834951 None:intergenic 30.0%
TAACTCAACTCTTACAAAAC+CGG - chr6.1:9833146-9833165 None:intergenic 30.0%
TATTCGTACATTAAGACAAC+GGG - chr6.1:9834111-9834130 None:intergenic 30.0%
TCAAATAAGTCAATCCAAAC+AGG - chr6.1:9832433-9832452 None:intergenic 30.0%
TGGAGTCATTTCAATATGAT+TGG - chr6.1:9833683-9833702 None:intergenic 30.0%
TGTACACTAAACTGAATCAT+TGG + chr6.1:9833558-9833577 MS.gene87898:intron 30.0%
TTTACCTTCAAAATGATCTC+TGG - chr6.1:9835634-9835653 None:intergenic 30.0%
! AACTGATTTAGTGTGTGTTT+GGG - chr6.1:9836516-9836535 None:intergenic 30.0%
! GTTGATGTTTTACAGTTCAT+TGG + chr6.1:9835043-9835062 MS.gene87898:CDS 30.0%
! GTTTTGTAAGAGTTGAGTTA+GGG + chr6.1:9833146-9833165 MS.gene87898:intron 30.0%
! TAACTGATTTAGTGTGTGTT+TGG - chr6.1:9836517-9836536 None:intergenic 30.0%
! TGCTATTTGACAACATTGAT+TGG + chr6.1:9834558-9834577 MS.gene87898:intron 30.0%
! TTGAGAAGTGAGATTTTGTT+GGG + chr6.1:9836422-9836441 MS.gene87898:intron 30.0%
! TTTGAGAAGTGAGATTTTGT+TGG + chr6.1:9836421-9836440 MS.gene87898:intron 30.0%
! TTTGGTATTTTGTAAGCACT+GGG + chr6.1:9834212-9834231 MS.gene87898:intron 30.0%
! TTTGGTTTATTCTCTGAGAA+TGG + chr6.1:9832904-9832923 MS.gene87898:intron 30.0%
! TTTTGTTCCACTCTCTATAA+GGG + chr6.1:9834856-9834875 MS.gene87898:intron 30.0%
! TTTTTGTTCCACTCTCTATA+AGG + chr6.1:9834855-9834874 MS.gene87898:intron 30.0%
!! TAGTTTGATTTGCATTTCGT+TGG + chr6.1:9833527-9833546 MS.gene87898:intron 30.0%
!! TTGTAACATGTGTTACTTGA+AGG + chr6.1:9835287-9835306 MS.gene87898:intron 30.0%
!!! AATTCCTTTTTTTCCAACCA+AGG - chr6.1:9834184-9834203 None:intergenic 30.0%
!!! AGTACTGTGGAATTTTTTTC+AGG + chr6.1:9833612-9833631 MS.gene87898:intron 30.0%
!!! CATTGTTTTTGTTTGTTCAG+AGG + chr6.1:9835711-9835730 MS.gene87898:intron 30.0%
!!! CTGAATCATTGGTTTTCATT+TGG + chr6.1:9833569-9833588 MS.gene87898:intron 30.0%
!!! GATAGCTAGTTTTTAAGGAA+GGG + chr6.1:9836302-9836321 MS.gene87898:intron 30.0%
!!! TGAAGAATGTAGTTGGTTTT+TGG + chr6.1:9832886-9832905 MS.gene87898:intron 30.0%
!!! TGATAGCTAGTTTTTAAGGA+AGG + chr6.1:9836301-9836320 MS.gene87898:intron 30.0%
AACAAACGAGAAAGACAACA+GGG - chr6.1:9833007-9833026 None:intergenic 35.0%
AACATGTGAATTAGGATGCA+AGG - chr6.1:9836387-9836406 None:intergenic 35.0%
AACGAGCAAATCATACTACT+CGG - chr6.1:9836250-9836269 None:intergenic 35.0%
AAGTAGGCTCTTTGTTAACT+AGG + chr6.1:9832321-9832340 MS.gene87898:intron 35.0%
AATAGAGCTGATGTGATCTT+AGG + chr6.1:9832406-9832425 MS.gene87898:intron 35.0%
AATCAAATCGGAATTTGAGG+AGG + chr6.1:9835119-9835138 MS.gene87898:CDS 35.0%
AATTGCATCCGACATAATGA+AGG + chr6.1:9835369-9835388 MS.gene87898:CDS 35.0%
ACAACCTATAGCATATGACA+TGG - chr6.1:9835564-9835583 None:intergenic 35.0%
AGGATAAGAAAAAGGTAAGG+TGG - chr6.1:9833899-9833918 None:intergenic 35.0%
AGTACCTTCGATGTGAAAAA+TGG - chr6.1:9836066-9836085 None:intergenic 35.0%
ATCAAATCGGAATTTGAGGA+GGG + chr6.1:9835120-9835139 MS.gene87898:CDS 35.0%
ATGTACGAATAAATGCACCA+AGG + chr6.1:9834120-9834139 MS.gene87898:CDS 35.0%
ATTGACATGGTATTCTATGG+CGG - chr6.1:9834919-9834938 None:intergenic 35.0%
ATTGATGCTAAAGGGAAGAA+AGG + chr6.1:9833772-9833791 MS.gene87898:CDS 35.0%
ATTGTTTGCTTGTCAGTGAA+AGG - chr6.1:9835316-9835335 None:intergenic 35.0%
ATTTGTCAAACAAACCAAGG+CGG - chr6.1:9833851-9833870 None:intergenic 35.0%
CAAATTGCGGTAAAGTATAG+TGG - chr6.1:9834623-9834642 None:intergenic 35.0%
CAACCTATAGCATATGACAT+GGG - chr6.1:9835563-9835582 None:intergenic 35.0%
CAGTTCATTGGTAAGAAAGA+AGG + chr6.1:9835055-9835074 MS.gene87898:CDS 35.0%
CCAACAGAGACGATTTAAAA+TGG - chr6.1:9833259-9833278 None:intergenic 35.0%
CCAAGGAAATGAAGAATACA+TGG - chr6.1:9835973-9835992 None:intergenic 35.0%
CCATGTATTCTTCATTTCCT+TGG + chr6.1:9835970-9835989 MS.gene87898:intron 35.0%
CTATCTAAGTCACGACATTA+AGG - chr6.1:9832726-9832745 None:intergenic 35.0%
GGAATTTGAACAAACCACTA+TGG - chr6.1:9834602-9834621 None:intergenic 35.0%
GTAACCTTGGTTGGAAAAAA+AGG + chr6.1:9834177-9834196 MS.gene87898:intron 35.0%
GTGAACTAGAACATTGTCTA+GGG - chr6.1:9831820-9831839 None:intergenic 35.0%
GTTCTCACAAAAGTTATGTC+AGG - chr6.1:9832464-9832483 None:intergenic 35.0%
TAAATCTATGGGGATCTATG+TGG + chr6.1:9835014-9835033 MS.gene87898:intron 35.0%
TAATGTCGTGACTTAGATAG+TGG + chr6.1:9832726-9832745 MS.gene87898:intron 35.0%
TAGCTGAATGATGTTCTACT+AGG + chr6.1:9834323-9834342 MS.gene87898:intron 35.0%
TATAGCAATGACCTATAGTG+TGG + chr6.1:9836570-9836589 MS.gene87898:intron 35.0%
TATATCTGCTAGAGTAACCT+TGG + chr6.1:9834164-9834183 MS.gene87898:intron 35.0%
TATTACTAATGCAACAGGGA+AGG - chr6.1:9832946-9832965 None:intergenic 35.0%
TCCATTGACATGGTATTCTA+TGG - chr6.1:9834922-9834941 None:intergenic 35.0%
TCCTATTATTGCACACATTC+AGG - chr6.1:9836099-9836118 None:intergenic 35.0%
TCCTGAATGTGTGCAATAAT+AGG + chr6.1:9836095-9836114 MS.gene87898:intron 35.0%
TGAATGATGTTCTACTAGGT+GGG + chr6.1:9834327-9834346 MS.gene87898:intron 35.0%
TGTACGAATAAATGCACCAA+GGG + chr6.1:9834121-9834140 MS.gene87898:CDS 35.0%
TGTGAACTAGAACATTGTCT+AGG - chr6.1:9831821-9831840 None:intergenic 35.0%
TTAAACTGTGATTGCGATGA+CGG + chr6.1:9832347-9832366 MS.gene87898:intron 35.0%
TTAAATTGAACACCTTCACC+CGG - chr6.1:9832234-9832253 None:intergenic 35.0%
TTACATAATATGCTGCCCAA+TGG - chr6.1:9835790-9835809 None:intergenic 35.0%
TTCTTCCCTTTAGCATCAAT+AGG - chr6.1:9833772-9833791 None:intergenic 35.0%
TTGCAAGATGATAGTAGGTT+AGG + chr6.1:9834359-9834378 MS.gene87898:intron 35.0%
TTTAAATCGTCTCTGTTGGT+TGG + chr6.1:9833260-9833279 MS.gene87898:intron 35.0%
TTTGTAGATGCTCATGAACT+TGG - chr6.1:9836888-9836907 None:intergenic 35.0%
! ACTGATTTAGTGTGTGTTTG+GGG - chr6.1:9836515-9836534 None:intergenic 35.0%
! ATGCAAAGTGCAAACCTTTT+TGG - chr6.1:9835403-9835422 None:intergenic 35.0%
! ATGTGATTTCTAGATGGTTG+AGG + chr6.1:9832820-9832839 MS.gene87898:intron 35.0%
! CAGTTGGGTTCAAATTTTCT+TGG + chr6.1:9832142-9832161 MS.gene87898:intron 35.0%
! CCATTTTAAATCGTCTCTGT+TGG + chr6.1:9833256-9833275 MS.gene87898:intron 35.0%
! CTTTGGTATTTTGTAAGCAC+TGG + chr6.1:9834211-9834230 MS.gene87898:intron 35.0%
! GGTCTAATGTGATTTCTAGA+TGG + chr6.1:9832814-9832833 MS.gene87898:intron 35.0%
! GGTGATTGTCATTTCATCTA+CGG - chr6.1:9832170-9832189 None:intergenic 35.0%
! GTTGTGTCAAAGCATTCAAA+GGG + chr6.1:9834878-9834897 MS.gene87898:intron 35.0%
! TGCAAAGTGCAAACCTTTTT+GGG - chr6.1:9835402-9835421 None:intergenic 35.0%
!! AAGAATACATGGTAATGGTG+GGG - chr6.1:9835962-9835981 None:intergenic 35.0%
!! AGAACATTGTCTAGGGTTTT+GGG - chr6.1:9831813-9831832 None:intergenic 35.0%
!! GAAGAATACATGGTAATGGT+GGG - chr6.1:9835963-9835982 None:intergenic 35.0%
!! GGTTTTGTAAGAGTTGAGTT+AGG + chr6.1:9833145-9833164 MS.gene87898:intron 35.0%
!! TACACCAGTTTTGTCAATTG+CGG + chr6.1:9834483-9834502 MS.gene87898:intron 35.0%
!! TAGAACATTGTCTAGGGTTT+TGG - chr6.1:9831814-9831833 None:intergenic 35.0%
!! TATAGGTTGTTTCAAGTTCG+TGG + chr6.1:9835574-9835593 MS.gene87898:intron 35.0%
!! TGAAGAATACATGGTAATGG+TGG - chr6.1:9835964-9835983 None:intergenic 35.0%
!! TGGTTTTGCAAGATGATAGT+AGG + chr6.1:9834354-9834373 MS.gene87898:intron 35.0%
!!! TGTGGAATTTTTTTCAGGCT+GGG + chr6.1:9833617-9833636 MS.gene87898:intron 35.0%
AAACAATTCCTCCAATGGAC+TGG + chr6.1:9835329-9835348 MS.gene87898:CDS 40.0%
AAGACAGCTACATCACTTTC+TGG + chr6.1:9834687-9834706 MS.gene87898:intron 40.0%
AAGCTAGTCGACAACACAAT+CGG - chr6.1:9835502-9835521 None:intergenic 40.0%
AATTGTGTGTGAGTTTCAGG+TGG - chr6.1:9832191-9832210 None:intergenic 40.0%
ACCTTCAAAATGATCTCTGG+AGG - chr6.1:9835631-9835650 None:intergenic 40.0%
AGACAGCTACATCACTTTCT+GGG + chr6.1:9834688-9834707 MS.gene87898:intron 40.0%
AGCTTCGGAACATGTGAATT+AGG - chr6.1:9836395-9836414 None:intergenic 40.0%
AGTACTTGTGCTCAATGATG+TGG + chr6.1:9833968-9833987 MS.gene87898:intron 40.0%
ATACGAGCAGCAAAAACAGA+AGG - chr6.1:9835091-9835110 None:intergenic 40.0%
ATATATTCCTCCCAGTCCAT+TGG - chr6.1:9835343-9835362 None:intergenic 40.0%
ATCAGCTACTTCATACTCCA+AGG - chr6.1:9835990-9836009 None:intergenic 40.0%
ATGTCTTCTGCATGAACTCA+GGG + chr6.1:9835857-9835876 MS.gene87898:intron 40.0%
ATGTGATCTTAGGACCTGTT+TGG + chr6.1:9832416-9832435 MS.gene87898:intron 40.0%
ATTGTGGATATGGGATAGTC+AGG + chr6.1:9834808-9834827 MS.gene87898:intron 40.0%
CAACAAACGAGAAAGACAAC+AGG - chr6.1:9833008-9833027 None:intergenic 40.0%
CAAGCAAACAATTCCTCCAA+TGG + chr6.1:9835324-9835343 MS.gene87898:CDS 40.0%
CATATGACATGGGAGATGAA+AGG - chr6.1:9835553-9835572 None:intergenic 40.0%
CTATGTTCCTGGTTCAATGA+GGG - chr6.1:9836023-9836042 None:intergenic 40.0%
CTCTACATTGACAGCATTTG+TGG + chr6.1:9836862-9836881 MS.gene87898:intron 40.0%
CTGAATGATGTTCTACTAGG+TGG + chr6.1:9834326-9834345 MS.gene87898:intron 40.0%
GAGCCACATTTGATGAGATA+AGG + chr6.1:9833068-9833087 MS.gene87898:intron 40.0%
GATAGGGACTTGGGTATTAT+GGG + chr6.1:9836205-9836224 MS.gene87898:intron 40.0%
GCCATAGAATACCATGTCAA+TGG + chr6.1:9834918-9834937 MS.gene87898:intron 40.0%
GCTCTGTTCCTTCATTATGT+CGG - chr6.1:9835380-9835399 None:intergenic 40.0%
GGAAAATAGGACATGGAAAG+TGG + chr6.1:9833299-9833318 MS.gene87898:CDS 40.0%
GTAGAACATCATTCAGCTAC+TGG - chr6.1:9834322-9834341 None:intergenic 40.0%
GTTAAGACTTAGGGAAATGC+TGG + chr6.1:9834431-9834450 MS.gene87898:intron 40.0%
TAAATTGAACACCTTCACCC+GGG - chr6.1:9832233-9832252 None:intergenic 40.0%
TAACAAAGAGCCTACTTACG+AGG - chr6.1:9832318-9832337 None:intergenic 40.0%
TATGTTCCTGGTTCAATGAG+GGG - chr6.1:9836022-9836041 None:intergenic 40.0%
TCATTGCAACATTTGGCTGA+TGG + chr6.1:9836915-9836934 MS.gene87898:CDS 40.0%
TCCTTCCTCATTGCAACATT+TGG + chr6.1:9836908-9836927 MS.gene87898:CDS 40.0%
TCTCCCATGTCATATGCTAT+AGG + chr6.1:9835557-9835576 MS.gene87898:intron 40.0%
TGAAGGTGGAAAATAGGACA+TGG + chr6.1:9833292-9833311 MS.gene87898:CDS 40.0%
TGATAGGGACTTGGGTATTA+TGG + chr6.1:9836204-9836223 MS.gene87898:intron 40.0%
TGATCCGCAATTGACAAAAC+TGG - chr6.1:9834490-9834509 None:intergenic 40.0%
TGGCAAGAAAACCCTAATCA+TGG + chr6.1:9832008-9832027 MS.gene87898:CDS 40.0%
TGTATTTCTCCATCGTTCTG+CGG - chr6.1:9834025-9834044 None:intergenic 40.0%
TTAGTCATCTCCTTACAAGC+CGG + chr6.1:9833124-9833143 MS.gene87898:intron 40.0%
TTCAGGTGAAGGTGGAAAAT+AGG + chr6.1:9833286-9833305 MS.gene87898:intron 40.0%
TTGCGGATCACAGAAAATAG+TGG + chr6.1:9834500-9834519 MS.gene87898:intron 40.0%
! AAAACAACCTTTTCAGCACC+AGG - chr6.1:9832057-9832076 None:intergenic 40.0%
! AACAATTCCTCCAATGGACT+GGG + chr6.1:9835330-9835349 MS.gene87898:CDS 40.0%
! AACATTGATTGGCATATCGC+AGG + chr6.1:9834569-9834588 MS.gene87898:intron 40.0%
! GAAGTGAGATTTTGTTGGGA+TGG + chr6.1:9836426-9836445 MS.gene87898:intron 40.0%
! GAGCCTTATCTCATCAAATG+TGG - chr6.1:9833074-9833093 None:intergenic 40.0%
! GGGAGTTTCTATGATTTTGC+TGG + chr6.1:9833407-9833426 MS.gene87898:intron 40.0%
! GGTACCCTTAGTAATTTGTG+AGG + chr6.1:9833428-9833447 MS.gene87898:intron 40.0%
! GGTTGTGTCAAAGCATTCAA+AGG + chr6.1:9834877-9834896 MS.gene87898:intron 40.0%
! TCCTCCAGAGATCATTTTGA+AGG + chr6.1:9835627-9835646 MS.gene87898:CDS 40.0%
!! AGAATACATGGTAATGGTGG+GGG - chr6.1:9835961-9835980 None:intergenic 40.0%
!! CAAATCATACTACTCGGTGT+GGG - chr6.1:9836244-9836263 None:intergenic 40.0%
!! CTACATCACTTTCTGGGATT+CGG + chr6.1:9834694-9834713 MS.gene87898:intron 40.0%
!! TCAAACTATTGGCTCAACAG+TGG - chr6.1:9833515-9833534 None:intergenic 40.0%
!! TCTTACAAAACCGGCTTGTA+AGG - chr6.1:9833137-9833156 None:intergenic 40.0%
!! TGTCCTCATTTGCTGTTCTA+CGG + chr6.1:9831973-9831992 MS.gene87898:CDS 40.0%
!!! AAGGCCATTTTTCACATCGA+AGG + chr6.1:9836059-9836078 MS.gene87898:CDS 40.0%
!!! CTGTGGAATTTTTTTCAGGC+TGG + chr6.1:9833616-9833635 MS.gene87898:intron 40.0%
AAACACGCTCAAGCAAAACC+AGG - chr6.1:9832292-9832311 None:intergenic 45.0%
AAATAGGTCTTGGTACCTCG+AGG + chr6.1:9836690-9836709 MS.gene87898:intron 45.0%
AAGCTTGTGGAGCTTACTGT+TGG - chr6.1:9835174-9835193 None:intergenic 45.0%
AATAGGTCTTGGTACCTCGA+GGG + chr6.1:9836691-9836710 MS.gene87898:intron 45.0%
AGCTAGTCGACAACACAATC+GGG - chr6.1:9835501-9835520 None:intergenic 45.0%
ATATCTTAGTGCTTCCGCCT+TGG + chr6.1:9833834-9833853 MS.gene87898:intron 45.0%
ATGGGGATTGATAGGGACTT+GGG + chr6.1:9836196-9836215 MS.gene87898:intron 45.0%
ATGTTCCTGGTTCAATGAGG+GGG - chr6.1:9836021-9836040 None:intergenic 45.0%
CAATGACCTATAGTGTGGCA+CGG + chr6.1:9836575-9836594 MS.gene87898:intron 45.0%
CACGAGTTTCAAATCGATCC+TGG - chr6.1:9836634-9836653 None:intergenic 45.0%
CAGGGACTTAGTCACAATTG+TGG + chr6.1:9832688-9832707 MS.gene87898:intron 45.0%
CCTATGTTCCTGGTTCAATG+AGG - chr6.1:9836024-9836043 None:intergenic 45.0%
CCTCATTGAACCAGGAACAT+AGG + chr6.1:9836021-9836040 MS.gene87898:intron 45.0%
CGCAATTGTGTGTGAGTTTC+AGG - chr6.1:9832194-9832213 None:intergenic 45.0%
CTTCTCAAAGGATGCAGCTT+CGG - chr6.1:9836410-9836429 None:intergenic 45.0%
GAAAAATGGCCTTCTGTCCA+AGG - chr6.1:9836052-9836071 None:intergenic 45.0%
GAAACTCACACACAATTGCG+AGG + chr6.1:9832194-9832213 MS.gene87898:intron 45.0%
GAAGCATGAAGTCTGCCATT+GGG + chr6.1:9835772-9835791 MS.gene87898:CDS 45.0%
GAATTCTTCTACTCGCCATG+GGG + chr6.1:9836179-9836198 MS.gene87898:intron 45.0%
GACACAACCCTTATAGAGAG+TGG - chr6.1:9834866-9834885 None:intergenic 45.0%
GAGTAGGTTCCTTAAACACG+TGG + chr6.1:9836607-9836626 MS.gene87898:intron 45.0%
GATGTCTTCTGCATGAACTC+AGG + chr6.1:9835856-9835875 MS.gene87898:intron 45.0%
GCCAAATGTTGCAATGAGGA+AGG - chr6.1:9836912-9836931 None:intergenic 45.0%
GCTGTAGCGATATAGCATAG+CGG - chr6.1:9834536-9834555 None:intergenic 45.0%
GGAATTCTTCTACTCGCCAT+GGG + chr6.1:9836178-9836197 MS.gene87898:intron 45.0%
GTACATTAAGACAACGGGAG+CGG - chr6.1:9834106-9834125 None:intergenic 45.0%
TCTGCTAGAGTAACCTTGGT+TGG + chr6.1:9834168-9834187 MS.gene87898:intron 45.0%
TGAAGCATGAAGTCTGCCAT+TGG + chr6.1:9835771-9835790 MS.gene87898:CDS 45.0%
TGAAGGAACAGAGCCCAAAA+AGG + chr6.1:9835386-9835405 MS.gene87898:CDS 45.0%
! ACACACAATTGCGAGGTGTT+GGG + chr6.1:9832201-9832220 MS.gene87898:intron 45.0%
! ACTGGGATGATCGTTTTCTC+TGG + chr6.1:9834229-9834248 MS.gene87898:intron 45.0%
! GATGATCGTTTTCTCTGGCA+GGG + chr6.1:9834234-9834253 MS.gene87898:intron 45.0%
! GCAAATCATACTACTCGGTG+TGG - chr6.1:9836245-9836264 None:intergenic 45.0%
! GGCTGCTTTATGAGCTATTG+AGG + chr6.1:9835732-9835751 MS.gene87898:CDS 45.0%
! GTTTTCTTGCCAGAACCTGT+AGG - chr6.1:9832000-9832019 None:intergenic 45.0%
! TCTCTGTTGGTTGGTGTTTC+AGG + chr6.1:9833269-9833288 MS.gene87898:intron 45.0%
! TTGGTTGGTGTTTCAGGTGA+AGG + chr6.1:9833275-9833294 MS.gene87898:intron 45.0%
! TTTTTCCCCCTCATTGAACC+AGG + chr6.1:9836013-9836032 MS.gene87898:intron 45.0%
!! AGGCGGAAGCACTAAGATAT+TGG - chr6.1:9833834-9833853 None:intergenic 45.0%
!! GAATACATGGTAATGGTGGG+GGG - chr6.1:9835960-9835979 None:intergenic 45.0%
!! TGTTCTACTAGGTGGGTTGT+TGG + chr6.1:9834334-9834353 MS.gene87898:intron 45.0%
AAATGCACCAAGGGAAGACC+AGG + chr6.1:9834130-9834149 MS.gene87898:CDS 50.0%
ACATTCTCTCCGCAGAACGA+TGG + chr6.1:9834013-9834032 MS.gene87898:CDS 50.0%
ACTCGCCATGGGGATTGATA+GGG + chr6.1:9836189-9836208 MS.gene87898:intron 50.0%
AGTCGACAACACAATCGGGT+AGG - chr6.1:9835497-9835516 None:intergenic 50.0%
ATTAAGACAACGGGAGCGGA+TGG - chr6.1:9834102-9834121 None:intergenic 50.0%
ATTTGTCTCTGCTCTCGACC+AGG + chr6.1:9836714-9836733 MS.gene87898:intron 50.0%
CAAGTCCCTATCAATCCCCA+TGG - chr6.1:9836197-9836216 None:intergenic 50.0%
CACACACAATTGCGAGGTGT+TGG + chr6.1:9832200-9832219 MS.gene87898:intron 50.0%
CACCAGGTCCAAACATTTGG+CGG - chr6.1:9832041-9832060 None:intergenic 50.0%
CAGCACCAGGTCCAAACATT+TGG - chr6.1:9832044-9832063 None:intergenic 50.0%
CATGGGGATTGATAGGGACT+TGG + chr6.1:9836195-9836214 MS.gene87898:intron 50.0%
CGTGTTTGAGCCTCGTAAGT+AGG + chr6.1:9832305-9832324 MS.gene87898:intron 50.0%
GAAATGACTCCAAGCGATGC+AGG + chr6.1:9833691-9833710 MS.gene87898:CDS 50.0%
GATCCTGGACCACGTGTTTA+AGG - chr6.1:9836619-9836638 None:intergenic 50.0%
GATTGGCATATCGCAGGTTG+CGG + chr6.1:9834575-9834594 MS.gene87898:intron 50.0%
GCCAACTGAGCTAAGCCTTA+CGG + chr6.1:9832262-9832281 MS.gene87898:intron 50.0%
GCGAGTAGAAGAATTCCCAC+AGG - chr6.1:9836175-9836194 None:intergenic 50.0%
GCGGAGAAGAGCCATGATTA+GGG - chr6.1:9832022-9832041 None:intergenic 50.0%
GCTCTTCTCCGCCAAATGTT+TGG + chr6.1:9832030-9832049 MS.gene87898:CDS 50.0%
GGACCGTAGAACAGCAAATG+AGG - chr6.1:9831979-9831998 None:intergenic 50.0%
GGGAATTCTTCTACTCGCCA+TGG + chr6.1:9836177-9836196 MS.gene87898:intron 50.0%
GTGGAGCTTACTGTTGGACA+CGG - chr6.1:9835168-9835187 None:intergenic 50.0%
GTTCCTTAAACACGTGGTCC+AGG + chr6.1:9836613-9836632 MS.gene87898:intron 50.0%
TACTCGCCATGGGGATTGAT+AGG + chr6.1:9836188-9836207 MS.gene87898:intron 50.0%
TATTCCTCCCAGTCCATTGG+AGG - chr6.1:9835340-9835359 None:intergenic 50.0%
TCCGTAAGGCTTAGCTCAGT+TGG - chr6.1:9832266-9832285 None:intergenic 50.0%
TTCTACGGTCCTACAGGTTC+TGG + chr6.1:9831988-9832007 MS.gene87898:CDS 50.0%
TTTGTCTCTGCTCTCGACCA+GGG + chr6.1:9836715-9836734 MS.gene87898:intron 50.0%
! GGATGATCGTTTTCTCTGGC+AGG + chr6.1:9834233-9834252 MS.gene87898:intron 50.0%
! GTTGGTGTTTCAGGTGAAGG+TGG + chr6.1:9833278-9833297 MS.gene87898:intron 50.0%
! GTTTGGACCTGGTGCTGAAA+AGG + chr6.1:9832047-9832066 MS.gene87898:CDS 50.0%
! TTCCTTACCTGGTCTTCCCT+TGG - chr6.1:9834140-9834159 None:intergenic 50.0%
! TTGCTGTTCTACGGTCCTAC+AGG + chr6.1:9831982-9832001 MS.gene87898:CDS 50.0%
!! AATTCCTCCAATGGACTGGG+AGG + chr6.1:9835333-9835352 MS.gene87898:CDS 50.0%
!! ACAGGGAAGGTGCTTACACA+AGG - chr6.1:9832933-9832952 None:intergenic 50.0%
!! ACGAGTGCTGTGCTACTTCA+TGG - chr6.1:9833463-9833482 None:intergenic 50.0%
CAAGGCGCATCCTATGTTCC+TGG - chr6.1:9836034-9836053 None:intergenic 55.0%
CACCAAGGGAAGACCAGGTA+AGG + chr6.1:9834135-9834154 MS.gene87898:intron 55.0%
CACGCTCAAGCAAAACCAGG+TGG - chr6.1:9832289-9832308 None:intergenic 55.0%
CAGGAACATAGGATGCGCCT+TGG + chr6.1:9836032-9836051 MS.gene87898:intron 55.0%
CTCCGCCAAATGTTTGGACC+TGG + chr6.1:9832036-9832055 MS.gene87898:CDS 55.0%
CTGCTCTCGACCAGGGAATA+CGG + chr6.1:9836722-9836741 MS.gene87898:intron 55.0%
GACCTATAGTGTGGCACGGT+TGG + chr6.1:9836579-9836598 MS.gene87898:intron 55.0%
GAGCAGAGACAAATCCCTCG+AGG - chr6.1:9836708-9836727 None:intergenic 55.0%
GCAAAACCAGGTGGTCCGTA+AGG - chr6.1:9832280-9832299 None:intergenic 55.0%
GGCGGAGAAGAGCCATGATT+AGG - chr6.1:9832023-9832042 None:intergenic 55.0%
TAGGATGCGCCTTGGACAGA+AGG + chr6.1:9836040-9836059 MS.gene87898:CDS 55.0%
TCCAAGCGATGCAGGCTTTC+AGG + chr6.1:9833699-9833718 MS.gene87898:CDS 55.0%
TCCTGAAAGCCTGCATCGCT+TGG - chr6.1:9833703-9833722 None:intergenic 55.0%
TGCCAACCGTGCCACACTAT+AGG - chr6.1:9836584-9836603 None:intergenic 55.0%
! CTCGGTGTGGGACTTAGACA+GGG - chr6.1:9836232-9836251 None:intergenic 55.0%
!! ACATGGTAATGGTGGGGGGA+CGG - chr6.1:9835956-9835975 None:intergenic 55.0%
!! ACTCGGTGTGGGACTTAGAC+AGG - chr6.1:9836233-9836252 None:intergenic 55.0%
ACACGCAACGCCGTATTCCC+TGG - chr6.1:9836735-9836754 None:intergenic 60.0%
GCTAAGCCTTACGGACCACC+TGG + chr6.1:9832271-9832290 MS.gene87898:intron 60.0%
GGCACGGTTGGCAGATGAGT+AGG + chr6.1:9836591-9836610 MS.gene87898:intron 60.0%
TCGCAGGTTGCGGACCATAG+TGG + chr6.1:9834585-9834604 MS.gene87898:intron 60.0%
TTGGGTTCGAACCCGGGTGA+AGG + chr6.1:9832219-9832238 MS.gene87898:intron 60.0%
!! ATGGTAATGGTGGGGGGACG+GGG - chr6.1:9835954-9835973 None:intergenic 60.0%
!! CATGGTAATGGTGGGGGGAC+GGG - chr6.1:9835955-9835974 None:intergenic 60.0%
!! CGAGGTGTTGGGTTCGAACC+CGG + chr6.1:9832212-9832231 MS.gene87898:intron 60.0%
!! GAGGTGTTGGGTTCGAACCC+GGG + chr6.1:9832213-9832232 MS.gene87898:intron 60.0%


Chromosome Type Strat End Strand Name
chr6.1 gene 9831786 9836934 9831786 ID=MS.gene87898
chr6.1 mRNA 9831786 9836934 9831786 ID=MS.gene87898.t1;Parent=MS.gene87898
chr6.1 exon 9831786 9831869 9831786 ID=MS.gene87898.t1.exon1;Parent=MS.gene87898.t1
chr6.1 CDS 9831786 9831869 9831786 ID=cds.MS.gene87898.t1;Parent=MS.gene87898.t1
chr6.1 exon 9831958 9832068 9831958 ID=MS.gene87898.t1.exon2;Parent=MS.gene87898.t1
chr6.1 CDS 9831958 9832068 9831958 ID=cds.MS.gene87898.t1;Parent=MS.gene87898.t1
chr6.1 exon 9833291 9833323 9833291 ID=MS.gene87898.t1.exon3;Parent=MS.gene87898.t1
chr6.1 CDS 9833291 9833323 9833291 ID=cds.MS.gene87898.t1;Parent=MS.gene87898.t1
chr6.1 exon 9833634 9833802 9833634 ID=MS.gene87898.t1.exon4;Parent=MS.gene87898.t1
chr6.1 CDS 9833634 9833802 9833634 ID=cds.MS.gene87898.t1;Parent=MS.gene87898.t1
chr6.1 exon 9833970 9834151 9833970 ID=MS.gene87898.t1.exon5;Parent=MS.gene87898.t1
chr6.1 CDS 9833970 9834151 9833970 ID=cds.MS.gene87898.t1;Parent=MS.gene87898.t1
chr6.1 exon 9835040 9835176 9835040 ID=MS.gene87898.t1.exon6;Parent=MS.gene87898.t1
chr6.1 CDS 9835040 9835176 9835040 ID=cds.MS.gene87898.t1;Parent=MS.gene87898.t1
chr6.1 exon 9835309 9835407 9835309 ID=MS.gene87898.t1.exon7;Parent=MS.gene87898.t1
chr6.1 CDS 9835309 9835407 9835309 ID=cds.MS.gene87898.t1;Parent=MS.gene87898.t1
chr6.1 exon 9835579 9835648 9835579 ID=MS.gene87898.t1.exon8;Parent=MS.gene87898.t1
chr6.1 CDS 9835579 9835648 9835579 ID=cds.MS.gene87898.t1;Parent=MS.gene87898.t1
chr6.1 exon 9835731 9835805 9835731 ID=MS.gene87898.t1.exon9;Parent=MS.gene87898.t1
chr6.1 CDS 9835731 9835805 9835731 ID=cds.MS.gene87898.t1;Parent=MS.gene87898.t1
chr6.1 exon 9836035 9836080 9836035 ID=MS.gene87898.t1.exon10;Parent=MS.gene87898.t1
chr6.1 CDS 9836035 9836080 9836035 ID=cds.MS.gene87898.t1;Parent=MS.gene87898.t1
chr6.1 exon 9836876 9836934 9836876 ID=MS.gene87898.t1.exon11;Parent=MS.gene87898.t1
chr6.1 CDS 9836876 9836934 9836876 ID=cds.MS.gene87898.t1;Parent=MS.gene87898.t1
Gene Sequence

>MS.gene87898

ATGTTGTGGGTAGACAAGTATCGTCCCAAAACCCTAGACAATGTTCTAGTTCACAACGATACCGCTCAAAATCTCAAAAAATTGGTAATTTTTCTCACACATTTAATCTCCTTAATTGTGTTTCTTATACAACATTCTTGTAATTTTTGTTAGGGTTTTTTTTTTATTGCAGGTTTCGGAACATGATTGTCCTCATTTGCTGTTCTACGGTCCTACAGGTTCTGGCAAGAAAACCCTAATCATGGCTCTTCTCCGCCAAATGTTTGGACCTGGTGCTGAAAAGGTTGTTTTTTTGTTACTTTTTTAGTGTGTTTGTTTCAATTAAATTTTTTTTATTTTTTTGGAAAAAAAATACACAGTTGGGTTCAAATTTTCTTGGCTCCGTAGATGAAATGACAATCACCACCTGAAACTCACACACAATTGCGAGGTGTTGGGTTCGAACCCGGGTGAAGGTGTTCAATTTAACAATATCTGCCAACTGAGCTAAGCCTTACGGACCACCTGGTTTTGCTTGAGCGTGTTTGAGCCTCGTAAGTAGGCTCTTTGTTAACTAGGTTTTTAAACTGTGATTGCGATGACGGTGACATGATTTTTTATATTACATAGAATTGTTGTCAAATAGAGCTGATGTGATCTTAGGACCTGTTTGGATTGACTTATTTGAGCTTATCTCCTGACATAACTTTTGTGAGAACTTAAGAAAACAACTCATGACATGTTCATAAGCTATGTTCAGCTCATTCTCATAAGCTCTTTGTAATAATTTAAGAAAATAGCTTGTAGCTTATTTGAAAACAATTTAACTTTATTTTATCTTTTCCTATATAAATAACTTATACATAAGTGCTTATCATGATAAGTGTTTGTGCTACGAACTTCAAATAAGTTGTATATACAAACAGGGACTTAGTCACAATTGTGGAGATATCAAAAACCTTAATGTCGTGACTTAGATAGTGGACTTTTTATCAATACTAGTGAAAGTAAAATGTGTTAGGAGAGTCTTAACTTTTACAGATAGTGACGGTCTAATGTGATTTCTAGATGGTTGAGGTTCTAGACAAGAAAAAATAGAATAAAGTGTATCTAATTAATTTTGAAGAATGTAGTTGGTTTTTGGTTTATTCTCTGAGAATGGATTCCTTGTGTAAGCACCTTCCCTGTTGCATTAGTAATAAAAGATTTAAGGTTTAATTAGCGTAATTAAATTAGTGTCCCTGTTGTCTTTCTCGTTTGTTGTTATAATGTAGCTTTAGTCTTTGATTGTTTGTTGTTAAGAGAGCCACATTTGATGAGATAAGGCTCGAGAATGTGTTTATAGTAGCTGATGGGTAGTTAGTCATCTCCTTACAAGCCGGTTTTGTAAGAGTTGAGTTAGGGCCGACTAAAATTCTAAGATTTGTGTTTATAGATATCATGCTCATGTTCGATTTACTTCTGCTTACTTCTTGGTGCTATAATTTGTTTCCATTTTAAATCGTCTCTGTTGGTTGGTGTTTCAGGTGAAGGTGGAAAATAGGACATGGAAAGTGGATGTAAGCTTCATTCGTTCTCAAACTATACCCTTATATTTTTGTGTTGTCGTTGTGAACTTGTGAAACACACATATGTATCGTTTGGGAGTTTCTATGATTTTGCTGGTACCCTTAGTAATTTGTGAGGAATAGCACTCCATGAAGTAGCACAGCACTCGTTCAGCTTTATGTTATTATTCTTGATGATGCCACTGTTGAGCCAATAGTTTGATTTGCATTTCGTTGGATTTGCTGTGTACACTAAACTGAATCATTGGTTTTCATTTGGCTTATTTATTTTAATTTTGAAGTACTGTGGAATTTTTTTCAGGCTGGGAGTAGATCGATTGATTTAGAGCTGACAACATTATCAAGTGCCAATCATATTGAAATGACTCCAAGCGATGCAGGCTTTCAGGACAGATACATTGTTCAAGAAATAATCAAAGAAATGGCTAAAAATAGACCTATTGATGCTAAAGGGAAGAAAGGATTTAAAGGTAACAAACTTGTTGTCTTTGTTTTCAACCAATATCTTAGTGCTTCCGCCTTGGTTTGTTTGACAAATGTTAGTAACTTAGGACTTCAAGCATCCACCTTACCTTTTTCTTATCCTTTTAGCTTACTTCAGTTTTTCAAGCTAATGTTTAATTTTGTTCTCTTTCAGTACTTGTGCTCAATGATGTGGACAAACTCTCTAGAGAAGCTCAACATTCTCTCCGCAGAACGATGGAGAAATACAGTGCTTATTGCAGATTAATTTTATGTTGCAATAGTTCTTCAAGAGTCACAGAAGCCATCCGCTCCCGTTGTCTTAATGTACGAATAAATGCACCAAGGGAAGACCAGGTAAGGAAATTTTATATCTGCTAGAGTAACCTTGGTTGGAAAAAAAGGAATTTTCTTTGCTTTGGTATTTTGTAAGCACTGGGATGATCGTTTTCTCTGGCAGGGTTGATATTAGTAAGCAGTATCATTGTTTTCCTCCTTATTATTATTTTGCTTGCTAGTTATTTCCAGTAGCTGAATGATGTTCTACTAGGTGGGTTGTTGGTTTTGCAAGATGATAGTAGGTTAGGTCCTTGCATAAGTTTTTAACTTTTATTTTTCTTCTGGCCGTTATTCTCTGTTAAGACTTAGGGAAATGCTGGTTAAGAAACTGAGTAAGAAGTTTCAGTTTTACACCAGTTTTGTCAATTGCGGATCACAGAAAATAGTGGTGTTCAAATTCCGCTATGCTATATCGCTACAGCTCTGCTATTTGACAACATTGATTGGCATATCGCAGGTTGCGGACCATAGTGGTTTGTTCAAATTCCACTATACTTTACCGCAATTTGACAACACTGTTTTAGATTATATAATACTTTTGTAGATTTAATGAAAGACAGCTACATCACTTTCTGGGATTCGGTCAAATTCTCTGCCAATACATATATTTTTTATTGAAATCATATGCCAAGAATTGTATATGCGTAATTACTGTTTATGTTTTCTTTATAAACATTGTGGATATGGGATAGTCAGGCTATTTGTCTCTGATTTTGTTATCTTTTTGTTCCACTCTCTATAAGGGTTGTGTCAAAGCATTCAAAGGGTTCTGAACTTGTTATCCGCCATAGAATACCATGTCAATGGACACTATTTTATTTATTTCATATACTAATATTGTTTAGCATATCCATTCTATAAATTGAATGTTCATCTTTACTAAATCTATGGGGATCTATGTGGCAGATTGTTGATGTTTTACAGTTCATTGGTAAGAAAGAAGGGCTACAACTTCCTTCTGTTTTTGCTGCTCGTATAGCAGAGAAATCAAATCGGAATTTGAGGAGGGCCATATTATCATTTGAGACTTGCCGTGTCCAACAGTAAGCTCCACAAGCTTATCATTTAATATGTGATGCATAATCTCAGATCTTCATTTACTTTTCAAAGATTTGTTTTATGGATAACTATTAATAGCTATCTCTTTTGCATGTTGTAACATGTGTTACTTGAAGGTATCCTTTCACTGACAAGCAAACAATTCCTCCAATGGACTGGGAGGAATATATTTCAGAAATTGCATCCGACATAATGAAGGAACAGAGCCCAAAAAGGTTTGCACTTTGCATATAGTTTTCTGATTTTTCATGATAAACAATATGTGATGCTGAACCTTGAAGTTGATAAATTTTATGAATTGCCTACCCGATTGTGTTGTCGACTAGCTTGTTGTTTCACTTACTTATGTGCTATGCACCTTTCATCTCCCATGTCATATGCTATAGGTTGTTTCAAGTTCGTGGAAAGCTGTATGAGCTTCTAATCAATTGCATTCCTCCAGAGATCATTTTGAAGGTAAATGTGTTGATTTACGATGTCTCTAAGTAAGACTTTTTGATCTTTATACTTGACTTTGACATTGTTTTTGTTTGTTCAGAGGCTGCTTTATGAGCTATTGAGGAAACTTGATGCAGAACTGAAGCATGAAGTCTGCCATTGGGCAGCATATTATGTAAGTGCATTATTTATATGATATTTCATTTCAGAATCTGGAATATATATGATGTCTTCTGCATGAACTCAGGGCCTACTGTATTTGATTTACAATTTTTAGTGTATAAGTATTTGTGTAATATTTTTTTCTTTTTATATATGCACCCCGTCCCCCCACCATTACCATGTATTCTTCATTTCCTTGGAGTATGAAGTAGCTGATTCTTTTTTCCCCCTCATTGAACCAGGAACATAGGATGCGCCTTGGACAGAAGGCCATTTTTCACATCGAAGGTACTTGGAATTCGTCCTGAATGTGTGCAATAATAGGATTTTTTTTACAGATATTTATGAGCTTGTGCGCTGTCTGTTTATTTTGTATAAACCTGTGGGAATTCTTCTACTCGCCATGGGGATTGATAGGGACTTGGGTATTATGGGACCCTGTCTAAGTCCCACACCGAGTAGTATGATTTGCTCGTTGCATTATTTAAGTCGTTTGGTTCTTCCTCTTTGATAGCTAGTTTTTAAGGAAGGGTTCCCAAATACTTTGATACTTATCAGGGACTCATCAGTCTAGACGCGTGTTTGTGTATGCCTTGCATCCTAATTCACATGTTCCGAAGCTGCATCCTTTGAGAAGTGAGATTTTGTTGGGATGGCTTCGATGCTAGTTTAGTGATGTTTTTGCTTCTTGAAACACATGCAGCGTGCATCGAACACTACCCCAAACACACACTAAATCAGTTAATATCAACAGGTTTATAAAAAGTAAATAAGGGATATAGCAATGACCTATAGTGTGGCACGGTTGGCAGATGAGTAGGTTCCTTAAACACGTGGTCCAGGATCGATTTGAAACTCGTGTATAGAAGAACATTTGTTGTTAAAGATTAATTCTTTAAATAGGTCTTGGTACCTCGAGGGATTTGTCTCTGCTCTCGACCAGGGAATACGGCGTTGCGTGTTCATCCAAAAAAGAGATTATAGAGTTTATACAAAGTAGTTATAGATTGGGATATAAGGTAGTATAGGTCTATGCATTATCTAATTGCATGCTGACCATTTTTTTCTTCTCTACATTGACAGCATTTGTGGCCAAGTTCATGAGCATCTACAAATCCTTCCTCATTGCAACATTTGGCTGA
Protein sequence

>MS.gene87898.t1

MLWVDKYRPKTLDNVLVHNDTAQNLKKLVSEHDCPHLLFYGPTGSGKKTLIMALLRQMFGPGAEKVKVENRTWKVDAGSRSIDLELTTLSSANHIEMTPSDAGFQDRYIVQEIIKEMAKNRPIDAKGKKGFKVLVLNDVDKLSREAQHSLRRTMEKYSAYCRLILCCNSSSRVTEAIRSRCLNVRINAPREDQIVDVLQFIGKKEGLQLPSVFAARIAEKSNRNLRRAILSFETCRVQQYPFTDKQTIPPMDWEEYISEIASDIMKEQSPKRLFQVRGKLYELLINCIPPEIILKRLLYELLRKLDAELKHEVCHWAAYYEHRMRLGQKAIFHIEAFVAKFMSIYKSFLIATFG