AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene55626

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene55626.t1 MTR_6g027590 97.458 354 9 0 1 354 1 354 0.0 721
MS.gene55626.t1 MTR_6g471010 94.915 354 18 0 1 354 1 354 0.0 711
MS.gene55626.t1 MTR_5g020810 36.286 350 204 4 2 346 413 748 2.46e-76 249
MS.gene55626.t1 MTR_3g118160 30.585 376 227 8 2 347 421 792 8.10e-46 167
MS.gene55626.t1 MTR_3g088380 31.799 239 126 4 3 234 11 219 2.39e-32 124
MS.gene55626.t1 MTR_3g088120 24.138 348 219 7 2 341 33 343 9.51e-31 120
MS.gene55626.t1 MTR_3g088120 25.763 295 179 6 2 288 33 295 3.54e-30 117
MS.gene55626.t1 MTR_4g102860 29.557 203 112 3 3 205 17 188 2.38e-23 99.4
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene55626.t1 AT5G27740 83.898 354 57 0 1 354 1 354 0.0 642
MS.gene55626.t1 AT1G21690 31.799 239 126 4 3 234 11 219 2.99e-31 121
MS.gene55626.t1 AT1G21690 31.799 239 126 4 3 234 11 219 3.80e-31 120
MS.gene55626.t1 AT1G21690 30.544 239 122 4 3 234 11 212 1.42e-28 113
MS.gene55626.t1 AT1G77470 27.236 246 147 4 3 247 41 255 3.37e-28 113
MS.gene55626.t1 AT1G21690 31.799 239 114 6 3 234 11 207 6.49e-28 111
MS.gene55626.t1 AT1G63160 28.571 203 114 3 3 205 17 188 4.17e-21 93.2

Find 76 sgRNAs with CRISPR-Local

Find 346 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCCAAGCGATGCAGGCTTTC+AGG 0.177682 6.2:+19440895 MS.gene55626:CDS
TAGAACATTGTCTAGGGTTT+TGG 0.211566 6.2:-19439005 None:intergenic
TGTCCTCATTTGCTGTTCTA+TGG 0.252413 6.2:+19439167 MS.gene55626:CDS
TCCTTCCTCATTGCAACATT+TGG 0.283181 6.2:+19444101 MS.gene55626:CDS
TTCTATGGTCCTACAGGTTC+TGG 0.312940 6.2:+19439182 MS.gene55626:CDS
CAGCACCAGGTCCAAACATT+TGG 0.316754 6.2:-19439235 None:intergenic
GCAAGTCTCAAATGATAATA+TGG 0.323719 6.2:-19442336 None:intergenic
GCTCTTCTCCGCCAAATGTT+TGG 0.325475 6.2:+19439224 MS.gene55626:CDS
AAAGGGAAGAAAGGATTTAA+AGG 0.340018 6.2:+19440977 MS.gene55626:CDS
CTCTACATTGACAGCATTTG+TGG 0.349408 6.2:+19444055 MS.gene55626:intron
TGGAGTCATTTCAATATGAT+TGG 0.356473 6.2:-19440876 None:intergenic
TTGCTGTTCTATGGTCCTAC+AGG 0.379799 6.2:+19439176 MS.gene55626:CDS
GGCGGAGAAGAGCCATGATT+AGG 0.386355 6.2:-19439214 None:intergenic
TTCAGGTGAAGGTGGAAAAT+AGG 0.393658 6.2:+19440482 MS.gene55626:intron
TTCCTTACCTGGTCTTCCCT+TGG 0.400437 6.2:-19441333 None:intergenic
TCCTGAAAGCCTGCATCGCT+TGG 0.402265 6.2:-19440896 None:intergenic
GCGGAGAAGAGCCATGATTA+GGG 0.410779 6.2:-19439213 None:intergenic
TTTACCTTCAAAATGATCTC+TGG 0.416432 6.2:-19442824 None:intergenic
TGAAGGAACAGAGCCCAAAA+AGG 0.416911 6.2:+19442579 MS.gene55626:CDS
TTCTTCCCTTTAGCATCAAT+AGG 0.419177 6.2:-19440965 None:intergenic
TCAAGAAATAATCAAAGAAA+TGG 0.433507 6.2:+19440931 MS.gene55626:CDS
AATAGACCTATTGATGCTAA+AGG 0.441862 6.2:+19440959 MS.gene55626:CDS
CAGTTCATTGGTAAGAAAGA+AGG 0.442426 6.2:+19442248 MS.gene55626:CDS
TTTGTAGATGCTCATGAACT+TGG 0.449160 6.2:-19444078 None:intergenic
CTCCGCCAAATGTTTGGACC+TGG 0.453363 6.2:+19439230 MS.gene55626:CDS
AGAGAGAAGAACGATGTTGT+GGG 0.456869 6.2:+19438967 None:intergenic
GGCTGCTTTATGAGCTATTG+AGG 0.464840 6.2:+19442925 MS.gene55626:CDS
AGAAATCAAATCGGAATTTG+AGG 0.467465 6.2:+19442309 MS.gene55626:CDS
TATTCGTACATTAAGACAAC+GGG 0.467729 6.2:-19441304 None:intergenic
ATAGACCTATTGATGCTAAA+GGG 0.470305 6.2:+19440960 MS.gene55626:CDS
GTTTGGACCTGGTGCTGAAA+AGG 0.486709 6.2:+19439241 MS.gene55626:CDS
TATAGGTTGTTTCAAGTTCG+TGG 0.487361 6.2:+19442767 MS.gene55626:intron
GGAAAATAGGACATGGAAAG+TGG 0.488544 6.2:+19440495 MS.gene55626:CDS
AAACAATTCCTCCAATGGAC+TGG 0.501237 6.2:+19442522 MS.gene55626:CDS
TGTGAACTAGAACATTGTCT+AGG 0.504995 6.2:-19439012 None:intergenic
ATTGTTTGCTTGTCAGTGAA+AGG 0.505282 6.2:-19442506 None:intergenic
GTTGGTGTTTCAGGTGAAGG+TGG 0.511764 6.2:+19440474 MS.gene55626:intron
GCTCTGTTCCTTCATTATGT+CGG 0.511967 6.2:-19442570 None:intergenic
AACAATTCCTCCAATGGACT+GGG 0.513038 6.2:+19442523 MS.gene55626:CDS
ATTGATGCTAAAGGGAAGAA+AGG 0.515065 6.2:+19440968 MS.gene55626:CDS
TGAAGCATGAAGTCTGCCAT+TGG 0.518329 6.2:+19442964 MS.gene55626:CDS
ATATATTCCTCCCAGTCCAT+TGG 0.519890 6.2:-19442533 None:intergenic
GAAGCATGAAGTCTGCCATT+GGG 0.521856 6.2:+19442965 MS.gene55626:CDS
TCATTGCAACATTTGGCTGA+AGG 0.524105 6.2:+19444108 MS.gene55626:CDS
GTGAACTAGAACATTGTCTA+GGG 0.525927 6.2:-19439011 None:intergenic
AGTTCATTGGTAAGAAAGAA+GGG 0.531136 6.2:+19442249 MS.gene55626:CDS
CACCAGGTCCAAACATTTGG+CGG 0.533440 6.2:-19439232 None:intergenic
CCTCATTGAACCAGGAACAT+AGG 0.533780 6.2:+19443214 MS.gene55626:intron
TGGCAAGAAAACCCTAATCA+TGG 0.537613 6.2:+19439202 MS.gene55626:CDS
GAAATGACTCCAAGCGATGC+AGG 0.544680 6.2:+19440887 MS.gene55626:CDS
TAGGATGCGCCTTGGACAGA+AGG 0.549273 6.2:+19443233 MS.gene55626:CDS
AATTGCATCCGACATAATGA+AGG 0.550631 6.2:+19442562 MS.gene55626:CDS
CAGGAACATAGGATGCGCCT+TGG 0.553627 6.2:+19443225 MS.gene55626:intron
GAGAGAGAAGAACGATGTTG+TGG 0.555979 6.2:+19438966 None:intergenic
GCCAAATGTTGCAATGAGGA+AGG 0.563630 6.2:-19444102 None:intergenic
TATTCCTCCCAGTCCATTGG+AGG 0.567731 6.2:-19442530 None:intergenic
AAATGCACCAAGGGAAGACC+AGG 0.569042 6.2:+19441326 MS.gene55626:CDS
CAAGCAAACAATTCCTCCAA+TGG 0.573213 6.2:+19442517 MS.gene55626:CDS
GTACATTAAGACAACGGGAG+CGG 0.575694 6.2:-19441299 None:intergenic
GGACCATAGAACAGCAAATG+AGG 0.576427 6.2:-19439170 None:intergenic
TGTACGAATAAATGCACCAA+GGG 0.576466 6.2:+19441317 MS.gene55626:CDS
ATTAAGACAACGGGAGCGGA+TGG 0.578928 6.2:-19441295 None:intergenic
ACATTCTCTCCGCAGAACGA+TGG 0.581717 6.2:+19441209 MS.gene55626:CDS
GTATAGCAGAGAAATCAAAT+CGG 0.601405 6.2:+19442300 MS.gene55626:CDS
ACCTTCAAAATGATCTCTGG+AGG 0.601868 6.2:-19442821 None:intergenic
TGTATTTCTCCATCGTTCTG+CGG 0.603903 6.2:-19441218 None:intergenic
AGTACTTGTGCTCAATGATG+TGG 0.613767 6.2:+19441164 MS.gene55626:intron
ATCAAATCGGAATTTGAGGA+GGG 0.625589 6.2:+19442313 MS.gene55626:CDS
TTACATAATATGCTGCCCAA+TGG 0.630713 6.2:-19442980 None:intergenic
AATCAAATCGGAATTTGAGG+AGG 0.632114 6.2:+19442312 MS.gene55626:CDS
TTATTCGTACATTAAGACAA+CGG 0.642459 6.2:-19441305 None:intergenic
TTCAGCCAAATGTTGCAATG+AGG 0.665561 6.2:-19444106 None:intergenic
TGAAGGTGGAAAATAGGACA+TGG 0.666148 6.2:+19440488 MS.gene55626:CDS
AATTCCTCCAATGGACTGGG+AGG 0.671185 6.2:+19442526 MS.gene55626:CDS
GTGGAGCTTACTGTTGGACA+CGG 0.710106 6.2:-19442358 None:intergenic
ATGTACGAATAAATGCACCA+AGG 0.719845 6.2:+19441316 MS.gene55626:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTAAATTTTTTTTATTTTTT+TGG + chr6.2:19439299-19439318 MS.gene55626:intron 0.0%
!! TAAAGATTAATTCTTTAAAT+AGG + chr6.2:19443867-19443886 MS.gene55626:intron 10.0%
!! TATGTATAAGTTATTTATAT+AGG - chr6.2:19439803-19439822 None:intergenic 10.0%
!! TCAATAAAAAATATATGTAT+TGG - chr6.2:19441925-19441944 None:intergenic 10.0%
!! AGGTTTATAAAAAGTAAATA+AGG + chr6.2:19443738-19443757 MS.gene55626:intron 15.0%
!! CATTAGTAATAAAAGATTTA+AGG + chr6.2:19440147-19440166 MS.gene55626:intron 15.0%
!! GGTTTATAAAAAGTAAATAA+GGG + chr6.2:19443739-19443758 MS.gene55626:intron 15.0%
!!! TTTAACTTTTATTTTTCTTC+TGG + chr6.2:19441589-19441608 MS.gene55626:intron 15.0%
!! AAAAGTTAAAAACTTATGCA+AGG - chr6.2:19441579-19441598 None:intergenic 20.0%
!! AAATACTTTGATACTTATCA+GGG + chr6.2:19443523-19443542 MS.gene55626:intron 20.0%
!! AATAAGTTGTATATACAAAC+AGG + chr6.2:19439861-19439880 MS.gene55626:intron 20.0%
!! AATTGTAAATCAAATACAGT+AGG - chr6.2:19443076-19443095 None:intergenic 20.0%
!! ATAAGTTGTATATACAAACA+GGG + chr6.2:19439862-19439881 MS.gene55626:intron 20.0%
!! ATACAAAGTAGTTATAGATT+GGG + chr6.2:19443975-19443994 MS.gene55626:intron 20.0%
!! CATAAAATTTATCAACTTCA+AGG - chr6.2:19442662-19442681 None:intergenic 20.0%
!! TATACAAAGTAGTTATAGAT+TGG + chr6.2:19443974-19443993 MS.gene55626:intron 20.0%
!! TCAAGAAATAATCAAAGAAA+TGG + chr6.2:19440931-19440950 MS.gene55626:CDS 20.0%
!! TGAACATTCAATTTATAGAA+TGG - chr6.2:19442180-19442199 None:intergenic 20.0%
!! TTAATTCTTTAAATAGGTCT+TGG + chr6.2:19443873-19443892 MS.gene55626:intron 20.0%
!! TTCATCTTTACTAAATCTAT+GGG + chr6.2:19442196-19442215 MS.gene55626:intron 20.0%
!! TTGTATAAGAAACACAATTA+AGG - chr6.2:19439092-19439111 None:intergenic 20.0%
!! TTTATAAACATTGTGGATAT+GGG + chr6.2:19441992-19442011 MS.gene55626:intron 20.0%
!!! AAACTCTATAATCTCTTTTT+TGG - chr6.2:19443955-19443974 None:intergenic 20.0%
!!! ACAAATCTTAGAATTTTAGT+CGG - chr6.2:19440368-19440387 None:intergenic 20.0%
!!! ACATTCTTGTAATTTTTGTT+AGG + chr6.2:19439111-19439130 MS.gene55626:intron 20.0%
!!! CATTCTTGTAATTTTTGTTA+GGG + chr6.2:19439112-19439131 MS.gene55626:intron 20.0%
!!! CTTTTCAAAGATTTGTTTTA+TGG + chr6.2:19442427-19442446 MS.gene55626:intron 20.0%
!!! TGATAAGTATCAAAGTATTT+GGG - chr6.2:19443523-19443542 None:intergenic 20.0%
!!! TGTTTTCTTTATAAACATTG+TGG + chr6.2:19441985-19442004 MS.gene55626:intron 20.0%
!!! TTAATTTTGAAGAATGTAGT+TGG + chr6.2:19440071-19440090 MS.gene55626:intron 20.0%
!!! TTTATTTTGTATAAACCTGT+GGG + chr6.2:19443350-19443369 MS.gene55626:intron 20.0%
!!! TTTTTTTTTATTGCAGGTTT+CGG + chr6.2:19439136-19439155 MS.gene55626:intron 20.0%
! AAAAACTGAAGTAAGCTAAA+AGG - chr6.2:19441115-19441134 None:intergenic 25.0%
! AAAAGGATAAGAAAAAGGTA+AGG - chr6.2:19441098-19441117 None:intergenic 25.0%
! AAATGAAGAATACATGGTAA+TGG - chr6.2:19443160-19443179 None:intergenic 25.0%
! AACATTTGTCAAACAAATCA+AGG - chr6.2:19441050-19441069 None:intergenic 25.0%
! AACGACAACACAAAAATATA+TGG - chr6.2:19440551-19440570 None:intergenic 25.0%
! AAGCTAAAAGGATAAGAAAA+AGG - chr6.2:19441103-19441122 None:intergenic 25.0%
! AATTACGCATATACAATTCT+TGG - chr6.2:19441957-19441976 None:intergenic 25.0%
! ACGACAACACAAAAATATAT+GGG - chr6.2:19440550-19440569 None:intergenic 25.0%
! AGATATAAAATTTCCTTACC+TGG - chr6.2:19441347-19441366 None:intergenic 25.0%
! CAAATACTTTGATACTTATC+AGG + chr6.2:19443522-19443541 MS.gene55626:intron 25.0%
! CAATGTAGAGAAGAAAAAAA+TGG - chr6.2:19444045-19444064 None:intergenic 25.0%
! CATATTAAATGATAAGCTTG+TGG - chr6.2:19442380-19442399 None:intergenic 25.0%
! CTAAATCAGTTAATATCAAC+AGG + chr6.2:19443718-19443737 MS.gene55626:intron 25.0%
! CTTTATAAACATTGTGGATA+TGG + chr6.2:19441991-19442010 MS.gene55626:intron 25.0%
! GTTCATCTTTACTAAATCTA+TGG + chr6.2:19442195-19442214 MS.gene55626:intron 25.0%
! TAAGTCTTAACAGAGAATAA+CGG - chr6.2:19441615-19441634 None:intergenic 25.0%
! TAGCAAGCAAAATAATAATG+AGG - chr6.2:19441485-19441504 None:intergenic 25.0%
! TAGTGAAAGTAAAATGTGTT+GGG + chr6.2:19439956-19439975 MS.gene55626:intron 25.0%
! TAGTTATAGATTGGGATATA+AGG + chr6.2:19443983-19444002 MS.gene55626:intron 25.0%
! TATTCCTCACAAATTACTAA+GGG - chr6.2:19440631-19440650 None:intergenic 25.0%
! TCATCTTTACTAAATCTATG+GGG + chr6.2:19442197-19442216 MS.gene55626:intron 25.0%
! TGATATTTCATTTCAGAATC+TGG + chr6.2:19443017-19443036 MS.gene55626:intron 25.0%
! TGGAAAAAAAATACACAGTT+GGG + chr6.2:19439319-19439338 MS.gene55626:intron 25.0%
! TTAAAAACTAGCTATCAAAG+AGG - chr6.2:19443491-19443510 None:intergenic 25.0%
! TTATTCGTACATTAAGACAA+CGG - chr6.2:19441308-19441327 None:intergenic 25.0%
! TTATTCTCTGTTAAGACTTA+GGG + chr6.2:19441615-19441634 MS.gene55626:intron 25.0%
! TTGACAAATGTTAGTAACTT+AGG + chr6.2:19441058-19441077 MS.gene55626:intron 25.0%
! TTGGAAAAAAAATACACAGT+TGG + chr6.2:19439318-19439337 MS.gene55626:intron 25.0%
!! AAAAGGAATTTTCTTTGCTT+TGG + chr6.2:19441390-19441409 MS.gene55626:intron 25.0%
!! CTGATAAGTATCAAAGTATT+TGG - chr6.2:19443524-19443543 None:intergenic 25.0%
!! CTTTTATTACTAATGCAACA+GGG - chr6.2:19440142-19440161 None:intergenic 25.0%
!! TCTTTTATTACTAATGCAAC+AGG - chr6.2:19440143-19440162 None:intergenic 25.0%
!! TTAACTTTTACAGATAGTGA+CGG + chr6.2:19439985-19440004 MS.gene55626:intron 25.0%
!!! ATTTTAATTCTGAAGTACTG+TGG + chr6.2:19440795-19440814 MS.gene55626:intron 25.0%
!!! CAATTTTTTGAGATTTTGAG+CGG - chr6.2:19439044-19439063 None:intergenic 25.0%
!!! GTTTATTTTGTATAAACCTG+TGG + chr6.2:19443349-19443368 MS.gene55626:intron 25.0%
!!! TAGGGTTTTTTTTTTATTGC+AGG + chr6.2:19439130-19439149 MS.gene55626:intron 25.0%
!!! TCTTTGATAGCTAGTTTTTA+AGG + chr6.2:19443490-19443509 MS.gene55626:intron 25.0%
AAAACAGTGTTGTCAAATTG+CGG - chr6.2:19441829-19441848 None:intergenic 30.0%
AAACAAATTATAGCACCAAG+AGG - chr6.2:19440432-19440451 None:intergenic 30.0%
AAACACACATATGTATCGTT+TGG + chr6.2:19440582-19440601 MS.gene55626:intron 30.0%
AAAGGGAAGAAAGGATTTAA+AGG + chr6.2:19440977-19440996 MS.gene55626:CDS 30.0%
AACAAAATCTCACTTCTCAA+AGG - chr6.2:19443615-19443634 None:intergenic 30.0%
AACACACATATGTATCGTTT+GGG + chr6.2:19440583-19440602 MS.gene55626:intron 30.0%
AATAGACCTATTGATGCTAA+AGG + chr6.2:19440959-19440978 MS.gene55626:CDS 30.0%
AGAAATCAAATCGGAATTTG+AGG + chr6.2:19442309-19442328 MS.gene55626:CDS 30.0%
AGTTCATTGGTAAGAAAGAA+GGG + chr6.2:19442249-19442268 MS.gene55626:CDS 30.0%
ATAGACCTATTGATGCTAAA+GGG + chr6.2:19440960-19440979 MS.gene55626:CDS 30.0%
ATTGGGATATAAGGTTGTAT+AGG + chr6.2:19443992-19444011 MS.gene55626:intron 30.0%
ATTTGTCAAACAAATCAAGG+CGG - chr6.2:19441047-19441066 None:intergenic 30.0%
CGAAATGCAAATCAAACTAT+TGG - chr6.2:19440722-19440741 None:intergenic 30.0%
CGCTCAAAATCTCAAAAAAT+TGG + chr6.2:19439042-19439061 MS.gene55626:CDS 30.0%
CTAGTGAAAGTAAAATGTGT+TGG + chr6.2:19439955-19439974 MS.gene55626:intron 30.0%
CTATTCCTCACAAATTACTA+AGG - chr6.2:19440632-19440651 None:intergenic 30.0%
GCAAGTCTCAAATGATAATA+TGG - chr6.2:19442339-19442358 None:intergenic 30.0%
GTATAGCAGAGAAATCAAAT+CGG + chr6.2:19442300-19442319 MS.gene55626:CDS 30.0%
GTTATTCTCTGTTAAGACTT+AGG + chr6.2:19441614-19441633 MS.gene55626:intron 30.0%
GTTGCATTATTTAAGTCGTT+TGG + chr6.2:19443460-19443479 MS.gene55626:intron 30.0%
TAAAATAGTGTCCATTGACA+TGG - chr6.2:19442125-19442144 None:intergenic 30.0%
TAACTCAACTCTTACAAAAC+CGG - chr6.2:19440342-19440361 None:intergenic 30.0%
TATTCGTACATTAAGACAAC+GGG - chr6.2:19441307-19441326 None:intergenic 30.0%
TCAAATAAGTCAATCCAAAC+AGG - chr6.2:19439625-19439644 None:intergenic 30.0%
TGGAGTCATTTCAATATGAT+TGG - chr6.2:19440879-19440898 None:intergenic 30.0%
TGTACACTAAACTGAATCAT+TGG + chr6.2:19440754-19440773 MS.gene55626:intron 30.0%
TTAAACTGTGATTGCGATAA+CGG + chr6.2:19439539-19439558 MS.gene55626:intron 30.0%
TTTACCTTCAAAATGATCTC+TGG - chr6.2:19442827-19442846 None:intergenic 30.0%
! AACTGATTTAGTGTGTGTTT+GGG - chr6.2:19443709-19443728 None:intergenic 30.0%
! GTTGATGTTTTACAGTTCAT+TGG + chr6.2:19442236-19442255 MS.gene55626:CDS 30.0%
! GTTTTGTAAGAGTTGAGTTA+GGG + chr6.2:19440342-19440361 MS.gene55626:intron 30.0%
! TAACTGATTTAGTGTGTGTT+TGG - chr6.2:19443710-19443729 None:intergenic 30.0%
! TGCTATTTGACAACATTGAT+TGG + chr6.2:19441751-19441770 MS.gene55626:intron 30.0%
! TTGAGAAGTGAGATTTTGTT+GGG + chr6.2:19443615-19443634 MS.gene55626:intron 30.0%
! TTTGAGAAGTGAGATTTTGT+TGG + chr6.2:19443614-19443633 MS.gene55626:intron 30.0%
! TTTGGTATTTTGTAAGCACT+GGG + chr6.2:19441408-19441427 MS.gene55626:intron 30.0%
! TTTGGTTTATTCTCTGAGAA+TGG + chr6.2:19440096-19440115 MS.gene55626:intron 30.0%
! TTTTGTTCCACTCTCTATAA+GGG + chr6.2:19442049-19442068 MS.gene55626:intron 30.0%
! TTTTTGTTCCACTCTCTATA+AGG + chr6.2:19442048-19442067 MS.gene55626:intron 30.0%
!! TAGTTTGATTTGCATTTCGT+TGG + chr6.2:19440723-19440742 MS.gene55626:intron 30.0%
!! TTGTAACATGTGTTACTTGA+AGG + chr6.2:19442480-19442499 MS.gene55626:intron 30.0%
!!! AATTCCTTTTTTTCCAACCA+AGG - chr6.2:19441380-19441399 None:intergenic 30.0%
!!! AGTACTGTGGAATTTTTTTC+AGG + chr6.2:19440808-19440827 MS.gene55626:intron 30.0%
!!! CATTGTTTTTGTTTGTTCAG+AGG + chr6.2:19442904-19442923 MS.gene55626:intron 30.0%
!!! CTGAATCATTGGTTTTCATT+TGG + chr6.2:19440765-19440784 MS.gene55626:intron 30.0%
!!! GATAGCTAGTTTTTAAGGAA+GGG + chr6.2:19443495-19443514 MS.gene55626:intron 30.0%
!!! TGAAGAATGTAGTTGGTTTT+TGG + chr6.2:19440078-19440097 MS.gene55626:intron 30.0%
!!! TGATAGCTAGTTTTTAAGGA+AGG + chr6.2:19443494-19443513 MS.gene55626:intron 30.0%
AACAAACGAGAAAGACAACA+GGG - chr6.2:19440199-19440218 None:intergenic 35.0%
AACATGTGAATTAGGATGCA+AGG - chr6.2:19443580-19443599 None:intergenic 35.0%
AACGAGCAAATCATACTACT+CGG - chr6.2:19443443-19443462 None:intergenic 35.0%
AAGTAGGCTCTTTGTTAACT+AGG + chr6.2:19439513-19439532 MS.gene55626:intron 35.0%
AATAGAGCTGATGTGATCTT+AGG + chr6.2:19439598-19439617 MS.gene55626:intron 35.0%
AATCAAATCGGAATTTGAGG+AGG + chr6.2:19442312-19442331 MS.gene55626:CDS 35.0%
AATTGCATCCGACATAATGA+AGG + chr6.2:19442562-19442581 MS.gene55626:CDS 35.0%
ACAACCTATAGCATATGACA+TGG - chr6.2:19442757-19442776 None:intergenic 35.0%
AGGATAAGAAAAAGGTAAGG+TGG - chr6.2:19441095-19441114 None:intergenic 35.0%
AGTACCTTCGATGTGAAAAA+TGG - chr6.2:19443259-19443278 None:intergenic 35.0%
ATCAAATCGGAATTTGAGGA+GGG + chr6.2:19442313-19442332 MS.gene55626:CDS 35.0%
ATGTACGAATAAATGCACCA+AGG + chr6.2:19441316-19441335 MS.gene55626:CDS 35.0%
ATTGACATGGTATTCTATGG+CGG - chr6.2:19442112-19442131 None:intergenic 35.0%
ATTGATGCTAAAGGGAAGAA+AGG + chr6.2:19440968-19440987 MS.gene55626:CDS 35.0%
ATTGTTTGCTTGTCAGTGAA+AGG - chr6.2:19442509-19442528 None:intergenic 35.0%
ATTTACTTCTGCTTACCTCT+TGG + chr6.2:19440414-19440433 MS.gene55626:intron 35.0%
CAAATTGCGGTAAAGTATAG+TGG - chr6.2:19441816-19441835 None:intergenic 35.0%
CAACCTATAGCATATGACAT+GGG - chr6.2:19442756-19442775 None:intergenic 35.0%
CAGTTCATTGGTAAGAAAGA+AGG + chr6.2:19442248-19442267 MS.gene55626:CDS 35.0%
CCAACAGAGACGATTTAAAA+TGG - chr6.2:19440455-19440474 None:intergenic 35.0%
CCAAGGAAATGAAGAATACA+TGG - chr6.2:19443166-19443185 None:intergenic 35.0%
CCATGTATTCTTCATTTCCT+TGG + chr6.2:19443163-19443182 MS.gene55626:intron 35.0%
CTATCTAAGTCACGACATTA+AGG - chr6.2:19439918-19439937 None:intergenic 35.0%
CTCGAGAATGTGTTTATAAG+TGG + chr6.2:19440283-19440302 MS.gene55626:intron 35.0%
GGAATTTGAACAAACCACTA+TGG - chr6.2:19441795-19441814 None:intergenic 35.0%
GTAACCTTGGTTGGAAAAAA+AGG + chr6.2:19441373-19441392 MS.gene55626:intron 35.0%
GTGAACTAGAACATTGTCTA+GGG - chr6.2:19439014-19439033 None:intergenic 35.0%
GTTCTCACAAAAGTTATGTC+AGG - chr6.2:19439656-19439675 None:intergenic 35.0%
TAAATCTATGGGGATCTATG+TGG + chr6.2:19442207-19442226 MS.gene55626:intron 35.0%
TAATGTCGTGACTTAGATAG+TGG + chr6.2:19439918-19439937 MS.gene55626:intron 35.0%
TAGCTGAATGATGTTCTACT+AGG + chr6.2:19441516-19441535 MS.gene55626:intron 35.0%
TATAGCAATGACCTATAGTG+TGG + chr6.2:19443763-19443782 MS.gene55626:intron 35.0%
TATATCTGCTAGAGTAACCT+TGG + chr6.2:19441360-19441379 MS.gene55626:intron 35.0%
TATTACTAATGCAACAGGGA+AGG - chr6.2:19440138-19440157 None:intergenic 35.0%
TCCATTGACATGGTATTCTA+TGG - chr6.2:19442115-19442134 None:intergenic 35.0%
TCCTATTATTGCACACATTC+AGG - chr6.2:19443292-19443311 None:intergenic 35.0%
TCCTGAATGTGTGCAATAAT+AGG + chr6.2:19443288-19443307 MS.gene55626:intron 35.0%
TGAATGATGTTCTACTAGGT+GGG + chr6.2:19441520-19441539 MS.gene55626:intron 35.0%
TGTACGAATAAATGCACCAA+GGG + chr6.2:19441317-19441336 MS.gene55626:CDS 35.0%
TGTGAACTAGAACATTGTCT+AGG - chr6.2:19439015-19439034 None:intergenic 35.0%
TTAAATTGAACACCTTCACC+CGG - chr6.2:19439426-19439445 None:intergenic 35.0%
TTACATAATATGCTGCCCAA+TGG - chr6.2:19442983-19443002 None:intergenic 35.0%
TTCTTCCCTTTAGCATCAAT+AGG - chr6.2:19440968-19440987 None:intergenic 35.0%
TTGCAAGATGATAGTAGGTT+AGG + chr6.2:19441552-19441571 MS.gene55626:intron 35.0%
TTTAAATCGTCTCTGTTGGT+TGG + chr6.2:19440456-19440475 MS.gene55626:intron 35.0%
TTTGTAGATGCTCATGAACT+TGG - chr6.2:19444081-19444100 None:intergenic 35.0%
! ACTGATTTAGTGTGTGTTTG+GGG - chr6.2:19443708-19443727 None:intergenic 35.0%
! ATGCAAAGTGCAAACCTTTT+TGG - chr6.2:19442596-19442615 None:intergenic 35.0%
! ATGTGATTTCTAGATGGTTG+AGG + chr6.2:19440012-19440031 MS.gene55626:intron 35.0%
! CAGTTGGGTTCAAATTTTCT+TGG + chr6.2:19439334-19439353 MS.gene55626:intron 35.0%
! CCATTTTAAATCGTCTCTGT+TGG + chr6.2:19440452-19440471 MS.gene55626:intron 35.0%
! CTTTGGTATTTTGTAAGCAC+TGG + chr6.2:19441407-19441426 MS.gene55626:intron 35.0%
! GGTCTAATGTGATTTCTAGA+TGG + chr6.2:19440006-19440025 MS.gene55626:intron 35.0%
! GGTGATTGTCATTTCATCTA+CGG - chr6.2:19439362-19439381 None:intergenic 35.0%
! GTTGTGTCAAAGCATTCAAA+GGG + chr6.2:19442071-19442090 MS.gene55626:intron 35.0%
! TGCAAAGTGCAAACCTTTTT+GGG - chr6.2:19442595-19442614 None:intergenic 35.0%
!! AAGAATACATGGTAATGGTG+GGG - chr6.2:19443155-19443174 None:intergenic 35.0%
!! AGAACATTGTCTAGGGTTTT+GGG - chr6.2:19439007-19439026 None:intergenic 35.0%
!! GAAGAATACATGGTAATGGT+GGG - chr6.2:19443156-19443175 None:intergenic 35.0%
!! GGTTTTGTAAGAGTTGAGTT+AGG + chr6.2:19440341-19440360 MS.gene55626:intron 35.0%
!! TACACCAGTTTTGTCAATTG+CGG + chr6.2:19441676-19441695 MS.gene55626:intron 35.0%
!! TAGAACATTGTCTAGGGTTT+TGG - chr6.2:19439008-19439027 None:intergenic 35.0%
!! TATAGGTTGTTTCAAGTTCG+TGG + chr6.2:19442767-19442786 MS.gene55626:intron 35.0%
!! TGAAGAATACATGGTAATGG+TGG - chr6.2:19443157-19443176 None:intergenic 35.0%
!! TGGTTTTGCAAGATGATAGT+AGG + chr6.2:19441547-19441566 MS.gene55626:intron 35.0%
!!! TGTGGAATTTTTTTCAGGCT+GGG + chr6.2:19440813-19440832 MS.gene55626:intron 35.0%
AAACAATTCCTCCAATGGAC+TGG + chr6.2:19442522-19442541 MS.gene55626:CDS 40.0%
AAACATGCTCAAGCAAAACC+AGG - chr6.2:19439484-19439503 None:intergenic 40.0%
AAATGTGTGTGAGTTTCAGG+TGG - chr6.2:19439383-19439402 None:intergenic 40.0%
AAGACAGCTACATCACTTTC+TGG + chr6.2:19441880-19441899 MS.gene55626:intron 40.0%
AAGCTAGTCGACAACACAAT+CGG - chr6.2:19442695-19442714 None:intergenic 40.0%
ACCTTCAAAATGATCTCTGG+AGG - chr6.2:19442824-19442843 None:intergenic 40.0%
AGACAGCTACATCACTTTCT+GGG + chr6.2:19441881-19441900 MS.gene55626:intron 40.0%
AGCTTCGGAACATGTGAATT+AGG - chr6.2:19443588-19443607 None:intergenic 40.0%
AGTACTTGTGCTCAATGATG+TGG + chr6.2:19441164-19441183 MS.gene55626:intron 40.0%
ATACGAGCAGCAAAAACAGA+AGG - chr6.2:19442284-19442303 None:intergenic 40.0%
ATATATTCCTCCCAGTCCAT+TGG - chr6.2:19442536-19442555 None:intergenic 40.0%
ATCAGCTACTTCATACTCCA+AGG - chr6.2:19443183-19443202 None:intergenic 40.0%
ATGTCTTCTGCATGAACTCA+GGG + chr6.2:19443050-19443069 MS.gene55626:intron 40.0%
ATGTGATCTTAGGACCTGTT+TGG + chr6.2:19439608-19439627 MS.gene55626:intron 40.0%
ATTGTGGATATGGGATAGTC+AGG + chr6.2:19442001-19442020 MS.gene55626:intron 40.0%
CAACAAACGAGAAAGACAAC+AGG - chr6.2:19440200-19440219 None:intergenic 40.0%
CAAGCAAACAATTCCTCCAA+TGG + chr6.2:19442517-19442536 MS.gene55626:CDS 40.0%
CATATGACATGGGAGATGAA+AGG - chr6.2:19442746-19442765 None:intergenic 40.0%
CTATGTTCCTGGTTCAATGA+GGG - chr6.2:19443216-19443235 None:intergenic 40.0%
CTCTACATTGACAGCATTTG+TGG + chr6.2:19444055-19444074 MS.gene55626:intron 40.0%
CTGAATGATGTTCTACTAGG+TGG + chr6.2:19441519-19441538 MS.gene55626:intron 40.0%
GAGCCACATTTGATGAGATA+AGG + chr6.2:19440260-19440279 MS.gene55626:intron 40.0%
GATAGGGACTTGGGTATTAT+GGG + chr6.2:19443398-19443417 MS.gene55626:intron 40.0%
GCCATAGAATACCATGTCAA+TGG + chr6.2:19442111-19442130 MS.gene55626:intron 40.0%
GCTCTGTTCCTTCATTATGT+CGG - chr6.2:19442573-19442592 None:intergenic 40.0%
GGAAAATAGGACATGGAAAG+TGG + chr6.2:19440495-19440514 MS.gene55626:CDS 40.0%
GTAGAACATCATTCAGCTAC+TGG - chr6.2:19441515-19441534 None:intergenic 40.0%
GTTAAGACTTAGGGAAATGC+TGG + chr6.2:19441624-19441643 MS.gene55626:intron 40.0%
GTTTATAAGTGGTAGCCGAT+GGG + chr6.2:19440294-19440313 MS.gene55626:intron 40.0%
TAAATTGAACACCTTCACCC+GGG - chr6.2:19439425-19439444 None:intergenic 40.0%
TAACAAAGAGCCTACTTACG+AGG - chr6.2:19439510-19439529 None:intergenic 40.0%
TATGTTCCTGGTTCAATGAG+GGG - chr6.2:19443215-19443234 None:intergenic 40.0%
TCCTTCCTCATTGCAACATT+TGG + chr6.2:19444101-19444120 MS.gene55626:CDS 40.0%
TCTCCCATGTCATATGCTAT+AGG + chr6.2:19442750-19442769 MS.gene55626:intron 40.0%
TGAAGGTGGAAAATAGGACA+TGG + chr6.2:19440488-19440507 MS.gene55626:CDS 40.0%
TGATAGGGACTTGGGTATTA+TGG + chr6.2:19443397-19443416 MS.gene55626:intron 40.0%
TGATCCGCAATTGACAAAAC+TGG - chr6.2:19441683-19441702 None:intergenic 40.0%
TGGCAAGAAAACCCTAATCA+TGG + chr6.2:19439202-19439221 MS.gene55626:CDS 40.0%
TGTATTTCTCCATCGTTCTG+CGG - chr6.2:19441221-19441240 None:intergenic 40.0%
TGTTTATAAGTGGTAGCCGA+TGG + chr6.2:19440293-19440312 MS.gene55626:intron 40.0%
TTAGTCATCTCCTTACAAGC+CGG + chr6.2:19440320-19440339 MS.gene55626:intron 40.0%
TTCAGGTGAAGGTGGAAAAT+AGG + chr6.2:19440482-19440501 MS.gene55626:intron 40.0%
TTGCGGATCACAGAAAATAG+TGG + chr6.2:19441693-19441712 MS.gene55626:intron 40.0%
! AAAACAACCTTTTCAGCACC+AGG - chr6.2:19439251-19439270 None:intergenic 40.0%
! AACAATTCCTCCAATGGACT+GGG + chr6.2:19442523-19442542 MS.gene55626:CDS 40.0%
! AACATTGATTGGCATATCGC+AGG + chr6.2:19441762-19441781 MS.gene55626:intron 40.0%
! GAAGTGAGATTTTGTTGGGA+TGG + chr6.2:19443619-19443638 MS.gene55626:intron 40.0%
! GAGCCTTATCTCATCAAATG+TGG - chr6.2:19440266-19440285 None:intergenic 40.0%
! GGGAGTTTCTATGATTTTGC+TGG + chr6.2:19440603-19440622 MS.gene55626:intron 40.0%
! GGTACCCTTAGTAATTTGTG+AGG + chr6.2:19440624-19440643 MS.gene55626:intron 40.0%
! GGTTGTGTCAAAGCATTCAA+AGG + chr6.2:19442070-19442089 MS.gene55626:intron 40.0%
! TCCTCCAGAGATCATTTTGA+AGG + chr6.2:19442820-19442839 MS.gene55626:CDS 40.0%
!! AGAATACATGGTAATGGTGG+GGG - chr6.2:19443154-19443173 None:intergenic 40.0%
!! CAAATCATACTACTCGGTGT+GGG - chr6.2:19443437-19443456 None:intergenic 40.0%
!! CTACATCACTTTCTGGGATT+CGG + chr6.2:19441887-19441906 MS.gene55626:intron 40.0%
!! TCAAACTATTGGCTCAACAG+TGG - chr6.2:19440711-19440730 None:intergenic 40.0%
!! TCTTACAAAACCGGCTTGTA+AGG - chr6.2:19440333-19440352 None:intergenic 40.0%
!! TGTCCTCATTTGCTGTTCTA+TGG + chr6.2:19439167-19439186 MS.gene55626:CDS 40.0%
!!! AAGGCCATTTTTCACATCGA+AGG + chr6.2:19443252-19443271 MS.gene55626:CDS 40.0%
!!! CTGTGGAATTTTTTTCAGGC+TGG + chr6.2:19440812-19440831 MS.gene55626:intron 40.0%
AAATAGGTCTTGGTACCTCG+AGG + chr6.2:19443883-19443902 MS.gene55626:intron 45.0%
AAGCTTGTGGAGCTTACTGT+TGG - chr6.2:19442367-19442386 None:intergenic 45.0%
AATAGGTCTTGGTACCTCGA+GGG + chr6.2:19443884-19443903 MS.gene55626:intron 45.0%
AGCTAGTCGACAACACAATC+GGG - chr6.2:19442694-19442713 None:intergenic 45.0%
ATGGGGATTGATAGGGACTT+GGG + chr6.2:19443389-19443408 MS.gene55626:intron 45.0%
ATGTTCCTGGTTCAATGAGG+GGG - chr6.2:19443214-19443233 None:intergenic 45.0%
CAATGACCTATAGTGTGGCA+CGG + chr6.2:19443768-19443787 MS.gene55626:intron 45.0%
CACGAGTTTCAAATCGATCC+TGG - chr6.2:19443827-19443846 None:intergenic 45.0%
CATGTTTGAGCCTCGTAAGT+AGG + chr6.2:19439497-19439516 MS.gene55626:intron 45.0%
CCTATGTTCCTGGTTCAATG+AGG - chr6.2:19443217-19443236 None:intergenic 45.0%
CCTCATTGAACCAGGAACAT+AGG + chr6.2:19443214-19443233 MS.gene55626:intron 45.0%
CGCAAATGTGTGTGAGTTTC+AGG - chr6.2:19439386-19439405 None:intergenic 45.0%
CTTCTCAAAGGATGCAGCTT+CGG - chr6.2:19443603-19443622 None:intergenic 45.0%
GAAAAATGGCCTTCTGTCCA+AGG - chr6.2:19443245-19443264 None:intergenic 45.0%
GAAACTCACACACATTTGCG+AGG + chr6.2:19439386-19439405 MS.gene55626:intron 45.0%
GAAGCATGAAGTCTGCCATT+GGG + chr6.2:19442965-19442984 MS.gene55626:CDS 45.0%
GAATTCTTCTACTCGCCATG+GGG + chr6.2:19443372-19443391 MS.gene55626:intron 45.0%
GACACAACCCTTATAGAGAG+TGG - chr6.2:19442059-19442078 None:intergenic 45.0%
GAGTAGGTTCCTTAAACACG+TGG + chr6.2:19443800-19443819 MS.gene55626:intron 45.0%
GATGTCTTCTGCATGAACTC+AGG + chr6.2:19443049-19443068 MS.gene55626:intron 45.0%
GCCAAATGTTGCAATGAGGA+AGG - chr6.2:19444105-19444124 None:intergenic 45.0%
GCTGTAGCGATATAGCATAG+CGG - chr6.2:19441729-19441748 None:intergenic 45.0%
GGAATTCTTCTACTCGCCAT+GGG + chr6.2:19443371-19443390 MS.gene55626:intron 45.0%
GGACCATAGAACAGCAAATG+AGG - chr6.2:19439173-19439192 None:intergenic 45.0%
GGAGATGACTAACTACCCAT+CGG - chr6.2:19440312-19440331 None:intergenic 45.0%
GTACATTAAGACAACGGGAG+CGG - chr6.2:19441302-19441321 None:intergenic 45.0%
TCTGCTAGAGTAACCTTGGT+TGG + chr6.2:19441364-19441383 MS.gene55626:intron 45.0%
TGAAGCATGAAGTCTGCCAT+TGG + chr6.2:19442964-19442983 MS.gene55626:CDS 45.0%
TGAAGGAACAGAGCCCAAAA+AGG + chr6.2:19442579-19442598 MS.gene55626:CDS 45.0%
TTCTATGGTCCTACAGGTTC+TGG + chr6.2:19439182-19439201 MS.gene55626:CDS 45.0%
! ACACACATTTGCGAGGTGTT+GGG + chr6.2:19439393-19439412 MS.gene55626:intron 45.0%
! ACTGGGATGATCGTTTTCTC+TGG + chr6.2:19441425-19441444 MS.gene55626:intron 45.0%
! GATGATCGTTTTCTCTGGCA+GGG + chr6.2:19441430-19441449 MS.gene55626:intron 45.0%
! GCAAATCATACTACTCGGTG+TGG - chr6.2:19443438-19443457 None:intergenic 45.0%
! GGCTGCTTTATGAGCTATTG+AGG + chr6.2:19442925-19442944 MS.gene55626:CDS 45.0%
! GTTTTCTTGCCAGAACCTGT+AGG - chr6.2:19439194-19439213 None:intergenic 45.0%
! TCTCTGTTGGTTGGTGTTTC+AGG + chr6.2:19440465-19440484 MS.gene55626:intron 45.0%
! TTGCTGTTCTATGGTCCTAC+AGG + chr6.2:19439176-19439195 MS.gene55626:CDS 45.0%
! TTGGTTGGTGTTTCAGGTGA+AGG + chr6.2:19440471-19440490 MS.gene55626:intron 45.0%
! TTTTTCCCCCTCATTGAACC+AGG + chr6.2:19443206-19443225 MS.gene55626:intron 45.0%
!! AGGCGGAAGCACTAAGATAT+TGG - chr6.2:19441030-19441049 None:intergenic 45.0%
!! GAATACATGGTAATGGTGGG+GGG - chr6.2:19443153-19443172 None:intergenic 45.0%
!! TGTTCTACTAGGTGGGTTGT+TGG + chr6.2:19441527-19441546 MS.gene55626:intron 45.0%
AAATGCACCAAGGGAAGACC+AGG + chr6.2:19441326-19441345 MS.gene55626:CDS 50.0%
ACATTCTCTCCGCAGAACGA+TGG + chr6.2:19441209-19441228 MS.gene55626:CDS 50.0%
ACTCGCCATGGGGATTGATA+GGG + chr6.2:19443382-19443401 MS.gene55626:intron 50.0%
AGTCGACAACACAATCGGGT+AGG - chr6.2:19442690-19442709 None:intergenic 50.0%
ATTAAGACAACGGGAGCGGA+TGG - chr6.2:19441298-19441317 None:intergenic 50.0%
ATTTGTCTCTGCTCTCGACC+AGG + chr6.2:19443907-19443926 MS.gene55626:intron 50.0%
CAAGTCCCTATCAATCCCCA+TGG - chr6.2:19443390-19443409 None:intergenic 50.0%
CACACACATTTGCGAGGTGT+TGG + chr6.2:19439392-19439411 MS.gene55626:intron 50.0%
CACCAGGTCCAAACATTTGG+CGG - chr6.2:19439235-19439254 None:intergenic 50.0%
CAGCACCAGGTCCAAACATT+TGG - chr6.2:19439238-19439257 None:intergenic 50.0%
CAGGGACTTAGTCACAATCG+TGG + chr6.2:19439880-19439899 MS.gene55626:intron 50.0%
CATGCTCAAGCAAAACCAGG+TGG - chr6.2:19439481-19439500 None:intergenic 50.0%
CATGGGGATTGATAGGGACT+TGG + chr6.2:19443388-19443407 MS.gene55626:intron 50.0%
GAAATGACTCCAAGCGATGC+AGG + chr6.2:19440887-19440906 MS.gene55626:CDS 50.0%
GATCCTGGACCACGTGTTTA+AGG - chr6.2:19443812-19443831 None:intergenic 50.0%
GATTGGCATATCGCAGGTTG+CGG + chr6.2:19441768-19441787 MS.gene55626:intron 50.0%
GCCAACTGAGCTAAGCCTTA+CGG + chr6.2:19439454-19439473 MS.gene55626:intron 50.0%
GCGAGTAGAAGAATTCCCAC+AGG - chr6.2:19443368-19443387 None:intergenic 50.0%
GCGGAGAAGAGCCATGATTA+GGG - chr6.2:19439216-19439235 None:intergenic 50.0%
GCTCTTCTCCGCCAAATGTT+TGG + chr6.2:19439224-19439243 MS.gene55626:CDS 50.0%
GGGAATTCTTCTACTCGCCA+TGG + chr6.2:19443370-19443389 MS.gene55626:intron 50.0%
GTGGAGCTTACTGTTGGACA+CGG - chr6.2:19442361-19442380 None:intergenic 50.0%
GTTCCTTAAACACGTGGTCC+AGG + chr6.2:19443806-19443825 MS.gene55626:intron 50.0%
TACTCGCCATGGGGATTGAT+AGG + chr6.2:19443381-19443400 MS.gene55626:intron 50.0%
TATTCCTCCCAGTCCATTGG+AGG - chr6.2:19442533-19442552 None:intergenic 50.0%
TCCGTAAGGCTTAGCTCAGT+TGG - chr6.2:19439458-19439477 None:intergenic 50.0%
TTTGTCTCTGCTCTCGACCA+GGG + chr6.2:19443908-19443927 MS.gene55626:intron 50.0%
! GGATGATCGTTTTCTCTGGC+AGG + chr6.2:19441429-19441448 MS.gene55626:intron 50.0%
! GTTGGTGTTTCAGGTGAAGG+TGG + chr6.2:19440474-19440493 MS.gene55626:intron 50.0%
! GTTTGGACCTGGTGCTGAAA+AGG + chr6.2:19439241-19439260 MS.gene55626:CDS 50.0%
! TTCCTTACCTGGTCTTCCCT+TGG - chr6.2:19441336-19441355 None:intergenic 50.0%
!! AATTCCTCCAATGGACTGGG+AGG + chr6.2:19442526-19442545 MS.gene55626:CDS 50.0%
!! ACAGGGAAGGTGCTTACACA+AGG - chr6.2:19440125-19440144 None:intergenic 50.0%
!! ACGAGTGCTGTGCTACTTCA+TGG - chr6.2:19440659-19440678 None:intergenic 50.0%
CAAGGCGCATCCTATGTTCC+TGG - chr6.2:19443227-19443246 None:intergenic 55.0%
CACCAAGGGAAGACCAGGTA+AGG + chr6.2:19441331-19441350 MS.gene55626:intron 55.0%
CAGGAACATAGGATGCGCCT+TGG + chr6.2:19443225-19443244 MS.gene55626:intron 55.0%
CTCCGCCAAATGTTTGGACC+TGG + chr6.2:19439230-19439249 MS.gene55626:CDS 55.0%
CTGCTCTCGACCAGGGAATA+CGG + chr6.2:19443915-19443934 MS.gene55626:intron 55.0%
GACCTATAGTGTGGCACGGT+TGG + chr6.2:19443772-19443791 MS.gene55626:intron 55.0%
GAGCAGAGACAAATCCCTCG+AGG - chr6.2:19443901-19443920 None:intergenic 55.0%
GCAAAACCAGGTGGTCCGTA+AGG - chr6.2:19439472-19439491 None:intergenic 55.0%
GGCGGAGAAGAGCCATGATT+AGG - chr6.2:19439217-19439236 None:intergenic 55.0%
TAGGATGCGCCTTGGACAGA+AGG + chr6.2:19443233-19443252 MS.gene55626:CDS 55.0%
TCCAAGCGATGCAGGCTTTC+AGG + chr6.2:19440895-19440914 MS.gene55626:CDS 55.0%
TCCTGAAAGCCTGCATCGCT+TGG - chr6.2:19440899-19440918 None:intergenic 55.0%
TGCCAACCGTGCCACACTAT+AGG - chr6.2:19443777-19443796 None:intergenic 55.0%
! CTCGGTGTGGGACTTAGACA+GGG - chr6.2:19443425-19443444 None:intergenic 55.0%
!! ACATGGTAATGGTGGGGGGA+CGG - chr6.2:19443149-19443168 None:intergenic 55.0%
!! ACTCGGTGTGGGACTTAGAC+AGG - chr6.2:19443426-19443445 None:intergenic 55.0%
ACACGCAACGCCGTATTCCC+TGG - chr6.2:19443928-19443947 None:intergenic 60.0%
GCTAAGCCTTACGGACCACC+TGG + chr6.2:19439463-19439482 MS.gene55626:intron 60.0%
GGCACGGTTGGCAGATGAGT+AGG + chr6.2:19443784-19443803 MS.gene55626:intron 60.0%
TCGCAGGTTGCGGACCATAG+TGG + chr6.2:19441778-19441797 MS.gene55626:intron 60.0%
TTGGGTTCGAACCCGGGTGA+AGG + chr6.2:19439411-19439430 MS.gene55626:intron 60.0%
!! ATGGTAATGGTGGGGGGACG+GGG - chr6.2:19443147-19443166 None:intergenic 60.0%
!! CATGGTAATGGTGGGGGGAC+GGG - chr6.2:19443148-19443167 None:intergenic 60.0%
!! CGAGGTGTTGGGTTCGAACC+CGG + chr6.2:19439404-19439423 MS.gene55626:intron 60.0%
!! GAGGTGTTGGGTTCGAACCC+GGG + chr6.2:19439405-19439424 MS.gene55626:intron 60.0%


Chromosome Type Strat End Strand Name
chr6.2 gene 19438980 19444127 19438980 ID=MS.gene55626
chr6.2 mRNA 19438980 19444127 19438980 ID=MS.gene55626.t1;Parent=MS.gene55626
chr6.2 exon 19438980 19439063 19438980 ID=MS.gene55626.t1.exon1;Parent=MS.gene55626.t1
chr6.2 CDS 19438980 19439063 19438980 ID=cds.MS.gene55626.t1;Parent=MS.gene55626.t1
chr6.2 exon 19439152 19439262 19439152 ID=MS.gene55626.t1.exon2;Parent=MS.gene55626.t1
chr6.2 CDS 19439152 19439262 19439152 ID=cds.MS.gene55626.t1;Parent=MS.gene55626.t1
chr6.2 exon 19440487 19440519 19440487 ID=MS.gene55626.t1.exon3;Parent=MS.gene55626.t1
chr6.2 CDS 19440487 19440519 19440487 ID=cds.MS.gene55626.t1;Parent=MS.gene55626.t1
chr6.2 exon 19440830 19440998 19440830 ID=MS.gene55626.t1.exon4;Parent=MS.gene55626.t1
chr6.2 CDS 19440830 19440998 19440830 ID=cds.MS.gene55626.t1;Parent=MS.gene55626.t1
chr6.2 exon 19441166 19441347 19441166 ID=MS.gene55626.t1.exon5;Parent=MS.gene55626.t1
chr6.2 CDS 19441166 19441347 19441166 ID=cds.MS.gene55626.t1;Parent=MS.gene55626.t1
chr6.2 exon 19442233 19442369 19442233 ID=MS.gene55626.t1.exon6;Parent=MS.gene55626.t1
chr6.2 CDS 19442233 19442369 19442233 ID=cds.MS.gene55626.t1;Parent=MS.gene55626.t1
chr6.2 exon 19442502 19442600 19442502 ID=MS.gene55626.t1.exon7;Parent=MS.gene55626.t1
chr6.2 CDS 19442502 19442600 19442502 ID=cds.MS.gene55626.t1;Parent=MS.gene55626.t1
chr6.2 exon 19442772 19442841 19442772 ID=MS.gene55626.t1.exon8;Parent=MS.gene55626.t1
chr6.2 CDS 19442772 19442841 19442772 ID=cds.MS.gene55626.t1;Parent=MS.gene55626.t1
chr6.2 exon 19442924 19442998 19442924 ID=MS.gene55626.t1.exon9;Parent=MS.gene55626.t1
chr6.2 CDS 19442924 19442998 19442924 ID=cds.MS.gene55626.t1;Parent=MS.gene55626.t1
chr6.2 exon 19443228 19443273 19443228 ID=MS.gene55626.t1.exon10;Parent=MS.gene55626.t1
chr6.2 CDS 19443228 19443273 19443228 ID=cds.MS.gene55626.t1;Parent=MS.gene55626.t1
chr6.2 exon 19444069 19444127 19444069 ID=MS.gene55626.t1.exon11;Parent=MS.gene55626.t1
chr6.2 CDS 19444069 19444127 19444069 ID=cds.MS.gene55626.t1;Parent=MS.gene55626.t1
Gene Sequence

>MS.gene55626

ATGTTGTGGGTAGACAAGTATCGTCCCAAAACCCTAGACAATGTTCTAGTTCACAACGATACCGCTCAAAATCTCAAAAAATTGGTAATTTTTCTCACACATTTAATCTCCTTAATTGTGTTTCTTATACAACATTCTTGTAATTTTTGTTAGGGTTTTTTTTTTATTGCAGGTTTCGGAACATGATTGTCCTCATTTGCTGTTCTATGGTCCTACAGGTTCTGGCAAGAAAACCCTAATCATGGCTCTTCTCCGCCAAATGTTTGGACCTGGTGCTGAAAAGGTTGTTTTTTTGTTACTTTTTTAGTGTTTGTTTCAATTAAATTTTTTTTATTTTTTTGGAAAAAAAATACACAGTTGGGTTCAAATTTTCTTGGCTCCGTAGATGAAATGACAATCACCACCTGAAACTCACACACATTTGCGAGGTGTTGGGTTCGAACCCGGGTGAAGGTGTTCAATTTAACATTATCTGCCAACTGAGCTAAGCCTTACGGACCACCTGGTTTTGCTTGAGCATGTTTGAGCCTCGTAAGTAGGCTCTTTGTTAACTAGGTTTTTAAACTGTGATTGCGATAACGGTGACATGATTTTTTATATTACATAGAATTGTTGTCAAATAGAGCTGATGTGATCTTAGGACCTGTTTGGATTGACTTATTTGAGCTTATCTCCTGACATAACTTTTGTGAGAACTTAAGAAAACAACTCATGACATGTTCATAAGCTATGTTCAGCTCATTCTCATAAGCTCTTTGTAATAATTTAAGAAAATAGCTTATAGCTTATTTGAAAACAATTTAACTTTATTTTATCTTTTCCTATATAAATAACTTATACATAAGTGCTTATCATGATAAGTGTTTGTGCTACGAACTTCAAATAAGTTGTATATACAAACAGGGACTTAGTCACAATCGTGGAGATATCAAAAACCTTAATGTCGTGACTTAGATAGTGGAGTTTTTATCAATACTAGTGAAAGTAAAATGTGTTGGGAGAGTCTTAACTTTTACAGATAGTGACGGTCTAATGTGATTTCTAGATGGTTGAGGTTCTAGACAAGAAAAAATAGAATAAAGTGTATCTAATTAATTTTGAAGAATGTAGTTGGTTTTTGGTTTATTCTCTGAGAATGGATTCCTTGTGTAAGCACCTTCCCTGTTGCATTAGTAATAAAAGATTTAAGGTTTAATTAGCGTAATTAAATTAGTGTCCCTGTTGTCTTTCTCGTTTGTTGTTATAATGTAGCTTTAGTCTTTGATTGTTTGTTGTTAAGAGAGCCACATTTGATGAGATAAGGCTCGAGAATGTGTTTATAAGTGGTAGCCGATGGGTAGTTAGTCATCTCCTTACAAGCCGGTTTTGTAAGAGTTGAGTTAGGGCCGACTAAAATTCTAAGATTTGTGTTTATAGATATCATGCTCATGTTCGATTTACTTCTGCTTACCTCTTGGTGCTATAATTTGTTTCCATTTTAAATCGTCTCTGTTGGTTGGTGTTTCAGGTGAAGGTGGAAAATAGGACATGGAAAGTGGATGTAAGCTTCATTCGTTCTCAAACTATACCCATATATTTTTGTGTTGTCGTTGTGAACTTGTGAAACACACATATGTATCGTTTGGGAGTTTCTATGATTTTGCTGGTACCCTTAGTAATTTGTGAGGAATAGCACTCCATGAAGTAGCACAGCACTCGTTCAGCTTTATGTTATTATTCTTGATGATGCCACTGTTGAGCCAATAGTTTGATTTGCATTTCGTTGGATTTACTGTGTACACTAAACTGAATCATTGGTTTTCATTTGGCTTATTTATTTTAATTCTGAAGTACTGTGGAATTTTTTTCAGGCTGGGAGTAGATCGATTGATTTAGAGCTGACAACATTATCAAGTGCCAATCATATTGAAATGACTCCAAGCGATGCAGGCTTTCAGGACAGATACATTGTTCAAGAAATAATCAAAGAAATGGCTAAAAATAGACCTATTGATGCTAAAGGGAAGAAAGGATTTAAAGGTAACAAACTTGTTGTCTTTGTTTTCAACCAATATCTTAGTGCTTCCGCCTTGATTTGTTTGACAAATGTTAGTAACTTAGGACTTCAAGCATCCACCTTACCTTTTTCTTATCCTTTTAGCTTACTTCAGTTTTTCAAGCTAATGTTTAATTTTGTTCTCTTTCAGTACTTGTGCTCAATGATGTGGACAAACTCTCTAGAGAAGCTCAACATTCTCTCCGCAGAACGATGGAGAAATACAGTGCTTATTGCAGATTAATTTTATGTTGCAATAGTTCTTCAAGAGTCACAGAAGCCATCCGCTCCCGTTGTCTTAATGTACGAATAAATGCACCAAGGGAAGACCAGGTAAGGAAATTTTATATCTGCTAGAGTAACCTTGGTTGGAAAAAAAGGAATTTTCTTTGCTTTGGTATTTTGTAAGCACTGGGATGATCGTTTTCTCTGGCAGGGTTGATATTAGTAAGCAGTATCATTGTTTTCCTCATTATTATTTTGCTTGCTAGTTATTTCCAGTAGCTGAATGATGTTCTACTAGGTGGGTTGTTGGTTTTGCAAGATGATAGTAGGTTAGGTCCTTGCATAAGTTTTTAACTTTTATTTTTCTTCTGGCCGTTATTCTCTGTTAAGACTTAGGGAAATGCTGGTTAAGAAACTGAGTAAGAAGTTTCAGTTTTACACCAGTTTTGTCAATTGCGGATCACAGAAAATAGTGGTGTTCAAATTCCGCTATGCTATATCGCTACAGCTCTGCTATTTGACAACATTGATTGGCATATCGCAGGTTGCGGACCATAGTGGTTTGTTCAAATTCCACTATACTTTACCGCAATTTGACAACACTGTTTTAGATTATATAATACTTTTGTAGATTTAATGAAAGACAGCTACATCACTTTCTGGGATTCGGTCAAATTCTCTGCCAATACATATATTTTTTATTGAAATCATATGCCAAGAATTGTATATGCGTAATTACTGTTTATGTTTTCTTTATAAACATTGTGGATATGGGATAGTCAGGCTATTTGTCTCTGATTTTGTTATCTTTTTGTTCCACTCTCTATAAGGGTTGTGTCAAAGCATTCAAAGGGTTCTGAACTTGTTATCCGCCATAGAATACCATGTCAATGGACACTATTTTATTTATTTCATATACTAATATTGTTTAGCATATCCATTCTATAAATTGAATGTTCATCTTTACTAAATCTATGGGGATCTATGTGGCAGATTGTTGATGTTTTACAGTTCATTGGTAAGAAAGAAGGGCTACAACTTCCTTCTGTTTTTGCTGCTCGTATAGCAGAGAAATCAAATCGGAATTTGAGGAGGGCCATATTATCATTTGAGACTTGCCGTGTCCAACAGTAAGCTCCACAAGCTTATCATTTAATATGTGATGCATAATCTCAGATCTTCATTTACTTTTCAAAGATTTGTTTTATGGATAACTATTAATAGCTATCTCTTTTGCATGTTGTAACATGTGTTACTTGAAGGTATCCTTTCACTGACAAGCAAACAATTCCTCCAATGGACTGGGAGGAATATATTTCAGAAATTGCATCCGACATAATGAAGGAACAGAGCCCAAAAAGGTTTGCACTTTGCATATAGTTTTCTGATTTTTCATGATAAACAATATGTGATGCTGAACCTTGAAGTTGATAAATTTTATGAATTGCCTACCCGATTGTGTTGTCGACTAGCTTGTTGTTTCACTTACTTATGTGCTATGCACCTTTCATCTCCCATGTCATATGCTATAGGTTGTTTCAAGTTCGTGGAAAGCTGTATGAGCTTCTAATCAATTGCATTCCTCCAGAGATCATTTTGAAGGTAAATGTGTTGATTTACGATGTCTCTAAGTAAGACTTTTTGATCTTTATACTTGACTTTGACATTGTTTTTGTTTGTTCAGAGGCTGCTTTATGAGCTATTGAGGAAACTTGATGCAGAACTGAAGCATGAAGTCTGCCATTGGGCAGCATATTATGTAAGTGCATTATTTATATGATATTTCATTTCAGAATCTGGAATATATATGATGTCTTCTGCATGAACTCAGGGCCTACTGTATTTGATTTACAATTTTTAGTGTATAAGTATTTGTGTAATATTCTTTTCTTTTTATATATGCACCCCGTCCCCCCACCATTACCATGTATTCTTCATTTCCTTGGAGTATGAAGTAGCTGATTCTTTTTTCCCCCTCATTGAACCAGGAACATAGGATGCGCCTTGGACAGAAGGCCATTTTTCACATCGAAGGTACTTTGAATTCGTCCTGAATGTGTGCAATAATAGGATTTTTTTTACAGATATTTATGAGCTTGTGCGCTGTCTGTTTATTTTGTATAAACCTGTGGGAATTCTTCTACTCGCCATGGGGATTGATAGGGACTTGGGTATTATGGGACCCTGTCTAAGTCCCACACCGAGTAGTATGATTTGCTCGTTGCATTATTTAAGTCGTTTGGTTCTTCCTCTTTGATAGCTAGTTTTTAAGGAAGGGTTCCCAAATACTTTGATACTTATCAGGGACTCATCAGTCTAGACGCGTGTTTGTGTATGCCTTGCATCCTAATTCACATGTTCCGAAGCTGCATCCTTTGAGAAGTGAGATTTTGTTGGGATGGCTTCGATGCTAGTTTAGTGATGTTTTTGCTTCTTGAAACACATGCAGCGTGCATCGAACACTACCCCAAACACACACTAAATCAGTTAATATCAACAGGTTTATAAAAAGTAAATAAGGGATATAGCAATGACCTATAGTGTGGCACGGTTGGCAGATGAGTAGGTTCCTTAAACACGTGGTCCAGGATCGATTTGAAACTCGTGTATAGAAGAACATTTGTTGTTAAAGATTAATTCTTTAAATAGGTCTTGGTACCTCGAGGGATTTGTCTCTGCTCTCGACCAGGGAATACGGCGTTGCGTGTTCATCCAAAAAAGAGATTATAGAGTTTATACAAAGTAGTTATAGATTGGGATATAAGGTTGTATAGGTCTATGCATTATCTAATTGCATGCTGACCATTTTTTTCTTCTCTACATTGACAGCATTTGTGGCCAAGTTCATGAGCATCTACAAATCCTTCCTCATTGCAACATTTGGCTGA
Protein sequence

>MS.gene55626.t1

MLWVDKYRPKTLDNVLVHNDTAQNLKKLVSEHDCPHLLFYGPTGSGKKTLIMALLRQMFGPGAEKVKVENRTWKVDAGSRSIDLELTTLSSANHIEMTPSDAGFQDRYIVQEIIKEMAKNRPIDAKGKKGFKVLVLNDVDKLSREAQHSLRRTMEKYSAYCRLILCCNSSSRVTEAIRSRCLNVRINAPREDQIVDVLQFIGKKEGLQLPSVFAARIAEKSNRNLRRAILSFETCRVQQYPFTDKQTIPPMDWEEYISEIASDIMKEQSPKRLFQVRGKLYELLINCIPPEIILKRLLYELLRKLDAELKHEVCHWAAYYEHRMRLGQKAIFHIEAFVAKFMSIYKSFLIATFG