Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene051784.t1 | AES92177.2 | 92 | 226 | 18 | 0 | 5 | 230 | 267 | 492 | 9.90E-117 | 429.5 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene051784.t1 | A7PZL3 | 39.1 | 202 | 121 | 2 | 5 | 205 | 255 | 455 | 1.2e-38 | 161.4 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene051784.t1 | G7JS79 | 92.0 | 226 | 18 | 0 | 5 | 230 | 267 | 492 | 7.2e-117 | 429.5 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene051781 | MS.gene051784 | 0.964245 | 4.38E-123 | -1.69E-46 |
| MS.gene051784 | MS.gene051787 | 0.966627 | 3.57E-126 | -1.69E-46 |
| MS.gene051784 | MS.gene072777 | 0.813323 | 2.71E-51 | -1.69E-46 |
| MS.gene051784 | MS.gene21620 | 0.809762 | 1.61E-50 | -1.69E-46 |
| MS.gene051784 | MS.gene24790 | 0.963893 | 1.21E-122 | -1.69E-46 |
| MS.gene051784 | MS.gene24792 | 0.956205 | 5.10E-114 | -1.69E-46 |
| MS.gene051784 | MS.gene42510 | 0.804751 | 1.86E-49 | -1.69E-46 |
| MS.gene051784 | MS.gene42512 | 0.814168 | 1.77E-51 | -1.69E-46 |
| MS.gene051784 | MS.gene43740 | 0.818637 | 1.77E-52 | -1.69E-46 |
| MS.gene051784 | MS.gene44844 | 0.825145 | 5.50E-54 | -1.69E-46 |
| MS.gene051784 | MS.gene57732 | 0.822383 | 2.44E-53 | -1.69E-46 |
| MS.gene051784 | MS.gene69797 | 0.810923 | 9.05E-51 | -1.69E-46 |
| MS.gene051784 | MS.gene84657 | 0.844059 | 9.56E-59 | -1.69E-46 |
| MS.gene051784 | MS.gene97685 | 0.805981 | 1.03E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene051784.t1 | MTR_4g124980 | 92.035 | 226 | 18 | 0 | 5 | 230 | 267 | 492 | 7.53e-149 | 424 |
| MS.gene051784.t1 | MTR_2g042740 | 80.444 | 225 | 44 | 0 | 5 | 229 | 249 | 473 | 2.48e-131 | 379 |
| MS.gene051784.t1 | MTR_7g110710 | 44.279 | 201 | 109 | 2 | 5 | 205 | 235 | 432 | 6.12e-49 | 167 |
| MS.gene051784.t1 | MTR_7g110710 | 41.964 | 224 | 121 | 3 | 5 | 222 | 235 | 455 | 6.80e-49 | 166 |
| MS.gene051784.t1 | MTR_8g098840 | 40.201 | 199 | 117 | 2 | 5 | 202 | 236 | 433 | 1.33e-47 | 163 |
| MS.gene051784.t1 | MTR_3g096330 | 43.204 | 206 | 105 | 5 | 5 | 205 | 268 | 466 | 2.84e-46 | 163 |
| MS.gene051784.t1 | MTR_2g435340 | 35.821 | 201 | 128 | 1 | 5 | 205 | 164 | 363 | 3.34e-45 | 155 |
| MS.gene051784.t1 | MTR_7g078680 | 39.604 | 202 | 120 | 2 | 5 | 205 | 247 | 447 | 8.22e-45 | 156 |
| MS.gene051784.t1 | MTR_2g435340 | 35.821 | 201 | 128 | 1 | 5 | 205 | 229 | 428 | 1.11e-44 | 155 |
| MS.gene051784.t1 | MTR_1g086030 | 41.509 | 212 | 102 | 5 | 5 | 207 | 170 | 368 | 1.97e-44 | 153 |
| MS.gene051784.t1 | MTR_1g086030 | 41.509 | 212 | 102 | 5 | 5 | 207 | 274 | 472 | 7.16e-44 | 154 |
| MS.gene051784.t1 | MTR_1g100040 | 39.604 | 202 | 120 | 2 | 5 | 205 | 248 | 448 | 1.15e-42 | 150 |
| MS.gene051784.t1 | MTR_1g100060 | 37.624 | 202 | 124 | 2 | 5 | 205 | 285 | 485 | 1.76e-39 | 142 |
| MS.gene051784.t1 | MTR_8g028725 | 34.667 | 225 | 135 | 4 | 5 | 228 | 247 | 460 | 2.08e-39 | 141 |
| MS.gene051784.t1 | MTR_4g120730 | 35.149 | 202 | 130 | 1 | 5 | 206 | 232 | 432 | 3.28e-39 | 140 |
| MS.gene051784.t1 | MTR_5g090160 | 38.235 | 204 | 121 | 3 | 5 | 205 | 237 | 438 | 3.42e-39 | 140 |
| MS.gene051784.t1 | MTR_1g100050 | 35.784 | 204 | 129 | 2 | 5 | 207 | 242 | 444 | 5.71e-39 | 140 |
| MS.gene051784.t1 | MTR_3g449590 | 38.426 | 216 | 128 | 5 | 5 | 218 | 239 | 451 | 1.32e-38 | 139 |
| MS.gene051784.t1 | MTR_7g088550 | 40.097 | 207 | 119 | 3 | 5 | 207 | 242 | 447 | 4.60e-38 | 138 |
| MS.gene051784.t1 | MTR_1g099850 | 35.644 | 202 | 128 | 2 | 5 | 205 | 247 | 447 | 2.41e-36 | 133 |
| MS.gene051784.t1 | MTR_6g048610 | 33.143 | 175 | 80 | 2 | 6 | 180 | 24 | 161 | 1.55e-21 | 87.8 |
| MS.gene051784.t1 | MTR_2g042760 | 51.786 | 56 | 16 | 2 | 65 | 119 | 1 | 46 | 1.74e-12 | 60.8 |
| MS.gene051784.t1 | MTR_6g005630 | 25.728 | 206 | 133 | 6 | 8 | 209 | 222 | 411 | 5.49e-11 | 62.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene051784.t1 | AT3G42950 | 72.444 | 225 | 62 | 0 | 5 | 229 | 259 | 483 | 7.95e-119 | 347 |
| MS.gene051784.t1 | AT1G19170 | 71.111 | 225 | 65 | 0 | 5 | 229 | 281 | 505 | 1.04e-116 | 342 |
| MS.gene051784.t1 | AT3G48950 | 37.500 | 224 | 138 | 2 | 5 | 227 | 238 | 460 | 4.50e-47 | 162 |
| MS.gene051784.t1 | AT2G23900 | 39.604 | 202 | 120 | 2 | 5 | 205 | 249 | 449 | 6.68e-46 | 159 |
| MS.gene051784.t1 | AT4G23500 | 39.286 | 224 | 133 | 3 | 5 | 227 | 260 | 481 | 7.61e-46 | 159 |
| MS.gene051784.t1 | AT5G41870 | 40.865 | 208 | 120 | 3 | 5 | 212 | 238 | 442 | 2.43e-44 | 154 |
| MS.gene051784.t1 | AT3G62110 | 41.489 | 188 | 109 | 1 | 5 | 191 | 235 | 422 | 4.84e-44 | 154 |
| MS.gene051784.t1 | AT3G62110 | 41.489 | 188 | 109 | 1 | 5 | 191 | 235 | 422 | 4.84e-44 | 154 |
| MS.gene051784.t1 | AT4G33440 | 40.299 | 201 | 118 | 2 | 5 | 205 | 264 | 462 | 5.22e-44 | 154 |
| MS.gene051784.t1 | AT3G61490 | 36.283 | 226 | 140 | 3 | 5 | 229 | 237 | 459 | 5.14e-42 | 149 |
| MS.gene051784.t1 | AT3G61490 | 36.283 | 226 | 140 | 3 | 5 | 229 | 237 | 459 | 5.14e-42 | 149 |
| MS.gene051784.t1 | AT3G61490 | 36.283 | 226 | 140 | 3 | 5 | 229 | 237 | 459 | 5.14e-42 | 149 |
| MS.gene051784.t1 | AT3G61490 | 36.283 | 226 | 140 | 3 | 5 | 229 | 252 | 474 | 7.07e-42 | 148 |
| MS.gene051784.t1 | AT3G61490 | 37.037 | 216 | 132 | 3 | 5 | 219 | 350 | 562 | 1.87e-41 | 149 |
| MS.gene051784.t1 | AT4G23820 | 38.308 | 201 | 122 | 2 | 5 | 205 | 233 | 431 | 2.50e-38 | 138 |
| MS.gene051784.t1 | AT3G06770 | 35.468 | 203 | 130 | 1 | 5 | 207 | 148 | 349 | 3.56e-36 | 130 |
| MS.gene051784.t1 | AT3G06770 | 35.468 | 203 | 130 | 1 | 5 | 207 | 166 | 367 | 5.98e-36 | 130 |
| MS.gene051784.t1 | AT3G06770 | 35.468 | 203 | 130 | 1 | 5 | 207 | 166 | 367 | 5.98e-36 | 130 |
| MS.gene051784.t1 | AT3G06770 | 35.468 | 203 | 130 | 1 | 5 | 207 | 236 | 437 | 1.21e-35 | 131 |
| MS.gene051784.t1 | AT3G06770 | 35.468 | 203 | 130 | 1 | 5 | 207 | 235 | 436 | 1.26e-35 | 131 |
| MS.gene051784.t1 | AT3G16850 | 38.806 | 201 | 120 | 2 | 5 | 205 | 232 | 429 | 3.27e-35 | 130 |
| MS.gene051784.t1 | AT5G49215 | 30.288 | 208 | 142 | 2 | 5 | 210 | 235 | 441 | 2.99e-29 | 114 |
| MS.gene051784.t1 | AT5G49215 | 30.288 | 208 | 142 | 2 | 5 | 210 | 233 | 439 | 3.08e-29 | 114 |
| MS.gene051784.t1 | AT3G15720 | 32.759 | 174 | 97 | 6 | 8 | 174 | 197 | 357 | 5.79e-13 | 67.8 |
| MS.gene051784.t1 | AT3G15720 | 32.759 | 174 | 97 | 6 | 8 | 174 | 196 | 356 | 5.89e-13 | 67.8 |
| MS.gene051784.t1 | AT3G15720 | 32.948 | 173 | 96 | 6 | 9 | 174 | 134 | 293 | 6.01e-13 | 67.8 |
| MS.gene051784.t1 | AT3G15720 | 32.759 | 174 | 97 | 6 | 8 | 174 | 193 | 353 | 7.36e-13 | 67.4 |
| MS.gene051784.t1 | AT5G44830 | 26.131 | 199 | 128 | 4 | 9 | 202 | 145 | 329 | 1.39e-12 | 66.2 |
| MS.gene051784.t1 | AT1G80170 | 28.218 | 202 | 120 | 6 | 10 | 202 | 238 | 423 | 3.23e-12 | 65.5 |
| MS.gene051784.t1 | AT1G56710 | 29.126 | 206 | 123 | 9 | 5 | 202 | 236 | 426 | 8.80e-12 | 64.3 |
Find 69 sgRNAs with CRISPR-Local
Find 83 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATTGTACATGGCCGTGTAAT+AGG | 0.250601 | 8.2:+7657925 | MS.gene051784:CDS |
| GATCAGTATGGAATTGCTTA+TGG | 0.251990 | 8.2:+7657302 | MS.gene051784:CDS |
| AAAGATGTGCTTCTTCTTGT+AGG | 0.280475 | 8.2:-7657893 | None:intergenic |
| AATCTATATCTGTTACATTC+TGG | 0.301959 | 8.2:-7658023 | None:intergenic |
| ATCTTCTTGTGTGGGATTCT+AGG | 0.317361 | 8.2:+7657590 | MS.gene051784:CDS |
| CTCGCATGGAGATGGGAAAA+TGG | 0.361958 | 8.2:-7657950 | None:intergenic |
| ATAAGCTTCACCAGTGTCTA+TGG | 0.362272 | 8.2:+7657781 | MS.gene051784:CDS |
| AAGCTTATGTCTCTTATAAC+TGG | 0.364953 | 8.2:-7657766 | None:intergenic |
| TAGAGCGAACAACGAGGTTT+CGG | 0.369617 | 8.2:-7657350 | None:intergenic |
| ATCTATATCTGTTACATTCT+GGG | 0.380122 | 8.2:-7658022 | None:intergenic |
| AAGAGTGGTTGGGATCAGTA+TGG | 0.421829 | 8.2:+7657290 | MS.gene051784:CDS |
| TCTTGTGTGGGATTCTAGGC+GGG | 0.427041 | 8.2:+7657594 | MS.gene051784:CDS |
| TTGTACATGGCCGTGTAATA+GGG | 0.427652 | 8.2:+7657926 | MS.gene051784:CDS |
| CTCGTTGTTCGCTCTATGTC+AGG | 0.432067 | 8.2:+7657357 | MS.gene051784:CDS |
| ATGTGCGGCAAATAACTTAT+CGG | 0.434253 | 8.2:+7657653 | MS.gene051784:CDS |
| GTAGGGTCATATCCATCATC+AGG | 0.436532 | 8.2:-7657736 | None:intergenic |
| ATCAGTATGGAATTGCTTAT+GGG | 0.446084 | 8.2:+7657303 | MS.gene051784:CDS |
| GTTTCGGATCAATATATTCA+TGG | 0.446289 | 8.2:-7657334 | None:intergenic |
| CTTGCTCATTGTACCGATCA+AGG | 0.450350 | 8.2:-7657975 | None:intergenic |
| GTACAATGAGCAAGGACAAC+TGG | 0.482555 | 8.2:+7657984 | MS.gene051784:CDS |
| CAATAGCAATAAAGAGTGGT+TGG | 0.485498 | 8.2:+7657279 | MS.gene051784:CDS |
| TCAAGGTTCTCGCATGGAGA+TGG | 0.487309 | 8.2:-7657958 | None:intergenic |
| CGCACATATCCGCCTCGTCC+AGG | 0.489333 | 8.2:-7657637 | None:intergenic |
| TACAATGAACACCCTGATGA+TGG | 0.498736 | 8.2:+7657724 | MS.gene051784:CDS |
| CTTATAACTGGAAGTGCCGT+AGG | 0.502358 | 8.2:-7657754 | None:intergenic |
| AACAGTGCTGGTATCTCAAT+AGG | 0.503794 | 8.2:+7657526 | MS.gene051784:intron |
| TTTCAGTGTGCAATTGTACA+TGG | 0.503886 | 8.2:+7657913 | MS.gene051784:CDS |
| AAGATTCTCCACCGTGACAT+TGG | 0.511289 | 8.2:-7657572 | None:intergenic |
| ATCTGTTACATTCTGGGACA+TGG | 0.514970 | 8.2:-7658016 | None:intergenic |
| CAAGGTTCTCGCATGGAGAT+GGG | 0.517048 | 8.2:-7657957 | None:intergenic |
| CGGTGGAGAATCTTCTTGTG+TGG | 0.518175 | 8.2:+7657581 | MS.gene051784:CDS |
| AATAGCAATAAAGAGTGGTT+GGG | 0.528054 | 8.2:+7657280 | MS.gene051784:CDS |
| TCAATAGGCAGTGAGATGTC+TGG | 0.537106 | 8.2:+7657541 | MS.gene051784:CDS |
| TTGCGAGGATATGTTGATAG+AGG | 0.543214 | 8.2:+7657229 | MS.gene051784:CDS |
| TGGCCATGGAGTTCGTGTGC+CGG | 0.544487 | 8.2:+7657801 | MS.gene051784:CDS |
| TTCACCAGTGTCTATGGCCA+TGG | 0.553675 | 8.2:+7657787 | MS.gene051784:CDS |
| GGTGGAGAATCTTCTTGTGT+GGG | 0.553858 | 8.2:+7657582 | MS.gene051784:CDS |
| CGAAAAGTTACATTTCTCAC+AGG | 0.557026 | 8.2:-7657850 | None:intergenic |
| CGGATCAATATATTCATGGA+AGG | 0.557077 | 8.2:-7657330 | None:intergenic |
| ATAAAGACTGCACCTGGACG+AGG | 0.558213 | 8.2:+7657625 | MS.gene051784:CDS |
| AACTCCATGGCCATAGACAC+TGG | 0.562611 | 8.2:-7657791 | None:intergenic |
| TTCTTGTGTGGGATTCTAGG+CGG | 0.572910 | 8.2:+7657593 | MS.gene051784:CDS |
| GGGATTCTAGGCGGGGTGTG+AGG | 0.573008 | 8.2:+7657602 | MS.gene051784:CDS |
| CTTGTGTGGGATTCTAGGCG+GGG | 0.583944 | 8.2:+7657595 | MS.gene051784:CDS |
| CTCCATGCGAGAACCTTGAT+CGG | 0.593522 | 8.2:+7657962 | MS.gene051784:CDS |
| TACCGATCAAGGTTCTCGCA+TGG | 0.601717 | 8.2:-7657964 | None:intergenic |
| CGTGTGCCGGTACGTATTCA+CGG | 0.606425 | 8.2:+7657814 | MS.gene051784:CDS |
| GTGAGGATAAAGACTGCACC+TGG | 0.609634 | 8.2:+7657619 | MS.gene051784:CDS |
| ACGTTTGAGAATGTCCGTGT+TGG | 0.610358 | 8.2:+7657682 | MS.gene051784:CDS |
| AGAGGACTGTTACATAAGCG+TGG | 0.614203 | 8.2:+7657247 | MS.gene051784:CDS |
| GTATGGAATTGCTTATGGGA+AGG | 0.620343 | 8.2:+7657307 | MS.gene051784:CDS |
| TCACTACCGTGAATACGTAC+CGG | 0.621904 | 8.2:-7657820 | None:intergenic |
| TGATGATGGATATGACCCTA+CGG | 0.624117 | 8.2:+7657738 | MS.gene051784:CDS |
| TTATAACTGGAAGTGCCGTA+GGG | 0.625551 | 8.2:-7657753 | None:intergenic |
| GAGGACTGTTACATAAGCGT+GGG | 0.628169 | 8.2:+7657248 | MS.gene051784:CDS |
| GTACCGGCACACGAACTCCA+TGG | 0.628417 | 8.2:-7657804 | None:intergenic |
| ATAGGCAGTGAGATGTCTGG+TGG | 0.634420 | 8.2:+7657544 | MS.gene051784:CDS |
| CTGGACGAGGCGGATATGTG+CGG | 0.643013 | 8.2:+7657638 | MS.gene051784:CDS |
| CTTGATCGGTACAATGAGCA+AGG | 0.653027 | 8.2:+7657976 | MS.gene051784:CDS |
| GGAAAATGGTCCCTATTACA+CGG | 0.656452 | 8.2:-7657936 | None:intergenic |
| GATGCAATAGCAATAAAGAG+TGG | 0.657676 | 8.2:+7657275 | MS.gene051784:CDS |
| TAGGCAGTGAGATGTCTGGT+GGG | 0.661719 | 8.2:+7657545 | MS.gene051784:CDS |
| TGGTGGGATATCCAATGTCA+CGG | 0.666291 | 8.2:+7657561 | MS.gene051784:CDS |
| TAGGGTCATATCCATCATCA+GGG | 0.672022 | 8.2:-7657735 | None:intergenic |
| AAGACTGCACCTGGACGAGG+CGG | 0.675169 | 8.2:+7657628 | MS.gene051784:CDS |
| GGCTTGCACAGACTCTTGCG+AGG | 0.691384 | 8.2:+7657214 | MS.gene051784:CDS |
| TCTTCATCACAATTCCAACA+CGG | 0.739063 | 8.2:-7657696 | None:intergenic |
| TGGGATATCCAATGTCACGG+TGG | 0.786411 | 8.2:+7657564 | MS.gene051784:CDS |
| CTGACATAGAGCGAACAACG+AGG | 0.801281 | 8.2:-7657356 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATCATAATATATGATAAGA+AGG | - | chr8.2:7657478-7657497 | None:intergenic | 15.0% |
| !! | TCATAAAAAAATATGCCAAA+AGG | - | chr8.2:7657428-7657447 | None:intergenic | 20.0% |
| ! | AATCTATATCTGTTACATTC+TGG | - | chr8.2:7658026-7658045 | None:intergenic | 25.0% |
| ! | ATCTATATCTGTTACATTCT+GGG | - | chr8.2:7658025-7658044 | None:intergenic | 25.0% |
| AAAAAATATGCCAAAAGGCA+TGG | - | chr8.2:7657423-7657442 | None:intergenic | 30.0% | |
| AAGCTTATGTCTCTTATAAC+TGG | - | chr8.2:7657769-7657788 | None:intergenic | 30.0% | |
| AATAGCAATAAAGAGTGGTT+GGG | + | chr8.2:7657280-7657299 | MS.gene051784:CDS | 30.0% | |
| ATCAGTATGGAATTGCTTAT+GGG | + | chr8.2:7657303-7657322 | MS.gene051784:CDS | 30.0% | |
| GTTTCGGATCAATATATTCA+TGG | - | chr8.2:7657337-7657356 | None:intergenic | 30.0% | |
| TTTATGAAATGAAACAGTGC+TGG | + | chr8.2:7657514-7657533 | MS.gene051784:intron | 30.0% | |
| ! | AAAAATATGCCAAAAGGCAT+GGG | - | chr8.2:7657422-7657441 | None:intergenic | 30.0% |
| AAAGATGTGCTTCTTCTTGT+AGG | - | chr8.2:7657896-7657915 | None:intergenic | 35.0% | |
| ATGTGCGGCAAATAACTTAT+CGG | + | chr8.2:7657653-7657672 | MS.gene051784:CDS | 35.0% | |
| CAATAGCAATAAAGAGTGGT+TGG | + | chr8.2:7657279-7657298 | MS.gene051784:CDS | 35.0% | |
| CGAAAAGTTACATTTCTCAC+AGG | - | chr8.2:7657853-7657872 | None:intergenic | 35.0% | |
| CGGATCAATATATTCATGGA+AGG | - | chr8.2:7657333-7657352 | None:intergenic | 35.0% | |
| GATCAGTATGGAATTGCTTA+TGG | + | chr8.2:7657302-7657321 | MS.gene051784:CDS | 35.0% | |
| GATGCAATAGCAATAAAGAG+TGG | + | chr8.2:7657275-7657294 | MS.gene051784:CDS | 35.0% | |
| TCTTCATCACAATTCCAACA+CGG | - | chr8.2:7657699-7657718 | None:intergenic | 35.0% | |
| TTTCAGTGTGCAATTGTACA+TGG | + | chr8.2:7657913-7657932 | MS.gene051784:CDS | 35.0% | |
| ATAAGCTTCACCAGTGTCTA+TGG | + | chr8.2:7657781-7657800 | MS.gene051784:CDS | 40.0% | |
| ATCTTCTTGTGTGGGATTCT+AGG | + | chr8.2:7657590-7657609 | MS.gene051784:CDS | 40.0% | |
| ATTGTACATGGCCGTGTAAT+AGG | + | chr8.2:7657925-7657944 | MS.gene051784:CDS | 40.0% | |
| GGAAAATGGTCCCTATTACA+CGG | - | chr8.2:7657939-7657958 | None:intergenic | 40.0% | |
| GTATGGAATTGCTTATGGGA+AGG | + | chr8.2:7657307-7657326 | MS.gene051784:CDS | 40.0% | |
| TACAATGAACACCCTGATGA+TGG | + | chr8.2:7657724-7657743 | MS.gene051784:CDS | 40.0% | |
| TAGGGTCATATCCATCATCA+GGG | - | chr8.2:7657738-7657757 | None:intergenic | 40.0% | |
| TTGTACATGGCCGTGTAATA+GGG | + | chr8.2:7657926-7657945 | MS.gene051784:CDS | 40.0% | |
| ! | ACTTTTCGTGACATGTCAGT+TGG | + | chr8.2:7657865-7657884 | MS.gene051784:CDS | 40.0% |
| ! | CTTTTCGTGACATGTCAGTT+GGG | + | chr8.2:7657866-7657885 | MS.gene051784:CDS | 40.0% |
| ! | TTGCGAGGATATGTTGATAG+AGG | + | chr8.2:7657229-7657248 | MS.gene051784:CDS | 40.0% |
| !! | AACAGTGCTGGTATCTCAAT+AGG | + | chr8.2:7657526-7657545 | MS.gene051784:intron | 40.0% |
| !! | ATCTGTTACATTCTGGGACA+TGG | - | chr8.2:7658019-7658038 | None:intergenic | 40.0% |
| !! | TGATGATGGATATGACCCTA+CGG | + | chr8.2:7657738-7657757 | MS.gene051784:CDS | 40.0% |
| !! | TTATAACTGGAAGTGCCGTA+GGG | - | chr8.2:7657756-7657775 | None:intergenic | 40.0% |
| AAGAGTGGTTGGGATCAGTA+TGG | + | chr8.2:7657290-7657309 | MS.gene051784:CDS | 45.0% | |
| AAGATTCTCCACCGTGACAT+TGG | - | chr8.2:7657575-7657594 | None:intergenic | 45.0% | |
| ACGTTTGAGAATGTCCGTGT+TGG | + | chr8.2:7657682-7657701 | MS.gene051784:CDS | 45.0% | |
| AGAGGACTGTTACATAAGCG+TGG | + | chr8.2:7657247-7657266 | MS.gene051784:CDS | 45.0% | |
| CTTGATCGGTACAATGAGCA+AGG | + | chr8.2:7657976-7657995 | MS.gene051784:CDS | 45.0% | |
| GAGGACTGTTACATAAGCGT+GGG | + | chr8.2:7657248-7657267 | MS.gene051784:CDS | 45.0% | |
| GGTGGAGAATCTTCTTGTGT+GGG | + | chr8.2:7657582-7657601 | MS.gene051784:CDS | 45.0% | |
| GTACAATGAGCAAGGACAAC+TGG | + | chr8.2:7657984-7658003 | MS.gene051784:CDS | 45.0% | |
| GTAGGGTCATATCCATCATC+AGG | - | chr8.2:7657739-7657758 | None:intergenic | 45.0% | |
| TAGAGCGAACAACGAGGTTT+CGG | - | chr8.2:7657353-7657372 | None:intergenic | 45.0% | |
| TCAATAGGCAGTGAGATGTC+TGG | + | chr8.2:7657541-7657560 | MS.gene051784:CDS | 45.0% | |
| TCACTACCGTGAATACGTAC+CGG | - | chr8.2:7657823-7657842 | None:intergenic | 45.0% | |
| TGGTGGGATATCCAATGTCA+CGG | + | chr8.2:7657561-7657580 | MS.gene051784:CDS | 45.0% | |
| TTCTTGTGTGGGATTCTAGG+CGG | + | chr8.2:7657593-7657612 | MS.gene051784:CDS | 45.0% | |
| ! | CTTGCTCATTGTACCGATCA+AGG | - | chr8.2:7657978-7657997 | None:intergenic | 45.0% |
| !! | CTTATAACTGGAAGTGCCGT+AGG | - | chr8.2:7657757-7657776 | None:intergenic | 45.0% |
| AACTCCATGGCCATAGACAC+TGG | - | chr8.2:7657794-7657813 | None:intergenic | 50.0% | |
| ATAAAGACTGCACCTGGACG+AGG | + | chr8.2:7657625-7657644 | MS.gene051784:CDS | 50.0% | |
| ATAGGCAGTGAGATGTCTGG+TGG | + | chr8.2:7657544-7657563 | MS.gene051784:CDS | 50.0% | |
| ATGGGCCATGCAGAAAGGTA+CGG | - | chr8.2:7657404-7657423 | None:intergenic | 50.0% | |
| CAAGGTTCTCGCATGGAGAT+GGG | - | chr8.2:7657960-7657979 | None:intergenic | 50.0% | |
| CGGTGGAGAATCTTCTTGTG+TGG | + | chr8.2:7657581-7657600 | MS.gene051784:CDS | 50.0% | |
| CTAACCCGTACCTTTCTGCA+TGG | + | chr8.2:7657396-7657415 | MS.gene051784:intron | 50.0% | |
| CTCCATGCGAGAACCTTGAT+CGG | + | chr8.2:7657962-7657981 | MS.gene051784:CDS | 50.0% | |
| CTCGCATGGAGATGGGAAAA+TGG | - | chr8.2:7657953-7657972 | None:intergenic | 50.0% | |
| CTCGTTGTTCGCTCTATGTC+AGG | + | chr8.2:7657357-7657376 | MS.gene051784:CDS | 50.0% | |
| CTGACATAGAGCGAACAACG+AGG | - | chr8.2:7657359-7657378 | None:intergenic | 50.0% | |
| GTGAGGATAAAGACTGCACC+TGG | + | chr8.2:7657619-7657638 | MS.gene051784:CDS | 50.0% | |
| TACCGATCAAGGTTCTCGCA+TGG | - | chr8.2:7657967-7657986 | None:intergenic | 50.0% | |
| TAGGCAGTGAGATGTCTGGT+GGG | + | chr8.2:7657545-7657564 | MS.gene051784:CDS | 50.0% | |
| TCAAGGTTCTCGCATGGAGA+TGG | - | chr8.2:7657961-7657980 | None:intergenic | 50.0% | |
| TCTTGTGTGGGATTCTAGGC+GGG | + | chr8.2:7657594-7657613 | MS.gene051784:CDS | 50.0% | |
| TGGGATATCCAATGTCACGG+TGG | + | chr8.2:7657564-7657583 | MS.gene051784:CDS | 50.0% | |
| TTCACCAGTGTCTATGGCCA+TGG | + | chr8.2:7657787-7657806 | MS.gene051784:CDS | 50.0% | |
| !! | AGGTACGGGTTAGTTGAGCT+AGG | - | chr8.2:7657389-7657408 | None:intergenic | 50.0% |
| !! | GGTACGGGTTAGTTGAGCTA+GGG | - | chr8.2:7657388-7657407 | None:intergenic | 50.0% |
| AAGGCATGGGCCATGCAGAA+AGG | - | chr8.2:7657409-7657428 | None:intergenic | 55.0% | |
| CTTGTGTGGGATTCTAGGCG+GGG | + | chr8.2:7657595-7657614 | MS.gene051784:CDS | 55.0% | |
| ! | CGTGTGCCGGTACGTATTCA+CGG | + | chr8.2:7657814-7657833 | MS.gene051784:CDS | 55.0% |
| ! | TCTGCATGGCCCATGCCTTT+TGG | + | chr8.2:7657410-7657429 | MS.gene051784:intron | 55.0% |
| ! | TGGGCCATGCAGAAAGGTAC+GGG | - | chr8.2:7657403-7657422 | None:intergenic | 55.0% |
| AAGACTGCACCTGGACGAGG+CGG | + | chr8.2:7657628-7657647 | MS.gene051784:CDS | 60.0% | |
| CTGGACGAGGCGGATATGTG+CGG | + | chr8.2:7657638-7657657 | MS.gene051784:CDS | 60.0% | |
| GGCTTGCACAGACTCTTGCG+AGG | + | chr8.2:7657214-7657233 | MS.gene051784:CDS | 60.0% | |
| TGGCCATGGAGTTCGTGTGC+CGG | + | chr8.2:7657801-7657820 | MS.gene051784:CDS | 60.0% | |
| ! | GTACCGGCACACGAACTCCA+TGG | - | chr8.2:7657807-7657826 | None:intergenic | 60.0% |
| CGCACATATCCGCCTCGTCC+AGG | - | chr8.2:7657640-7657659 | None:intergenic | 65.0% | |
| GGGATTCTAGGCGGGGTGTG+AGG | + | chr8.2:7657602-7657621 | MS.gene051784:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.2 | gene | 7657212 | 7658056 | 7657212 | ID=MS.gene051784 |
| chr8.2 | mRNA | 7657212 | 7658056 | 7657212 | ID=MS.gene051784.t1;Parent=MS.gene051784 |
| chr8.2 | exon | 7657212 | 7657378 | 7657212 | ID=MS.gene051784.t1.exon1;Parent=MS.gene051784.t1 |
| chr8.2 | CDS | 7657212 | 7657378 | 7657212 | ID=cds.MS.gene051784.t1;Parent=MS.gene051784.t1 |
| chr8.2 | exon | 7657531 | 7658056 | 7657531 | ID=MS.gene051784.t1.exon2;Parent=MS.gene051784.t1 |
| chr8.2 | CDS | 7657531 | 7658056 | 7657531 | ID=cds.MS.gene051784.t1;Parent=MS.gene051784.t1 |
| Gene Sequence |
| Protein sequence |
