Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene051781.t1 | AES92177.2 | 99.1 | 226 | 2 | 0 | 5 | 230 | 267 | 492 | 1.30E-127 | 465.7 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene051781.t1 | A7PZL3 | 41.1 | 202 | 117 | 2 | 5 | 205 | 255 | 455 | 4.5e-41 | 169.5 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene051781.t1 | G7JS79 | 99.1 | 226 | 2 | 0 | 5 | 230 | 267 | 492 | 9.0e-128 | 465.7 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene051781 | MS.gene051784 | 0.964245 | 4.38E-123 | -1.69E-46 |
| MS.gene051781 | MS.gene051787 | 0.99167 | 6.76E-189 | -1.69E-46 |
| MS.gene051781 | MS.gene06550 | 0.821696 | 3.52E-53 | -1.69E-46 |
| MS.gene051781 | MS.gene06619 | 0.814841 | 1.25E-51 | -1.69E-46 |
| MS.gene051781 | MS.gene067797 | 0.802115 | 6.54E-49 | -1.69E-46 |
| MS.gene051781 | MS.gene06793 | 0.824127 | 9.55E-54 | -1.69E-46 |
| MS.gene051781 | MS.gene071315 | 0.810066 | 1.39E-50 | -1.69E-46 |
| MS.gene051781 | MS.gene071316 | 0.803631 | 3.18E-49 | -1.69E-46 |
| MS.gene051781 | MS.gene072777 | 0.813905 | 2.02E-51 | -1.69E-46 |
| MS.gene051781 | MS.gene21620 | 0.824708 | 6.97E-54 | -1.69E-46 |
| MS.gene051781 | MS.gene22470 | 0.814745 | 1.32E-51 | -1.69E-46 |
| MS.gene051781 | MS.gene24790 | 0.992676 | 9.58E-195 | -1.69E-46 |
| MS.gene051781 | MS.gene24792 | 0.972172 | 2.46E-134 | -1.69E-46 |
| MS.gene051781 | MS.gene40782 | 0.801695 | 7.97E-49 | -1.69E-46 |
| MS.gene051781 | MS.gene42070 | 0.827963 | 1.17E-54 | -1.69E-46 |
| MS.gene051781 | MS.gene42510 | 0.829958 | 3.85E-55 | -1.69E-46 |
| MS.gene051781 | MS.gene42512 | 0.841922 | 3.54E-58 | -1.69E-46 |
| MS.gene051781 | MS.gene43178 | 0.807273 | 5.48E-50 | -1.69E-46 |
| MS.gene051781 | MS.gene43740 | 0.826477 | 2.66E-54 | -1.69E-46 |
| MS.gene051781 | MS.gene44844 | 0.834598 | 2.73E-56 | -1.69E-46 |
| MS.gene051781 | MS.gene57732 | 0.838922 | 2.16E-57 | -1.69E-46 |
| MS.gene051781 | MS.gene57734 | 0.807652 | 4.55E-50 | -1.69E-46 |
| MS.gene051781 | MS.gene58736 | 0.805659 | 1.20E-49 | -1.69E-46 |
| MS.gene051781 | MS.gene69797 | 0.826166 | 3.15E-54 | -1.69E-46 |
| MS.gene051781 | MS.gene77197 | 0.815672 | 8.20E-52 | -1.69E-46 |
| MS.gene051781 | MS.gene80266 | 0.800878 | 1.17E-48 | -1.69E-46 |
| MS.gene051781 | MS.gene83712 | 0.803322 | 3.69E-49 | -1.69E-46 |
| MS.gene051781 | MS.gene84657 | 0.861671 | 8.71E-64 | -1.69E-46 |
| MS.gene051781 | MS.gene97306 | 0.812127 | 4.96E-51 | -1.69E-46 |
| MS.gene051781 | MS.gene97685 | 0.81342 | 2.58E-51 | -1.69E-46 |
| MS.gene051781 | MS.gene97762 | 0.809501 | 1.83E-50 | -1.69E-46 |
| MS.gene051781 | MS.gene99224 | 0.80212 | 6.52E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene051781.t1 | MTR_4g124980 | 99.115 | 226 | 2 | 0 | 5 | 230 | 267 | 492 | 1.59e-164 | 463 |
| MS.gene051781.t1 | MTR_2g042740 | 85.333 | 225 | 33 | 0 | 5 | 229 | 249 | 473 | 1.03e-143 | 410 |
| MS.gene051781.t1 | MTR_7g110710 | 45.536 | 224 | 113 | 3 | 5 | 222 | 235 | 455 | 1.00e-56 | 187 |
| MS.gene051781.t1 | MTR_7g110710 | 45.536 | 224 | 113 | 3 | 5 | 222 | 235 | 455 | 1.07e-56 | 187 |
| MS.gene051781.t1 | MTR_8g098840 | 42.211 | 199 | 113 | 2 | 5 | 202 | 236 | 433 | 2.62e-52 | 176 |
| MS.gene051781.t1 | MTR_2g435340 | 38.806 | 201 | 122 | 1 | 5 | 205 | 164 | 363 | 1.95e-51 | 171 |
| MS.gene051781.t1 | MTR_1g086030 | 45.631 | 206 | 102 | 4 | 5 | 207 | 170 | 368 | 5.14e-51 | 171 |
| MS.gene051781.t1 | MTR_2g435340 | 38.806 | 201 | 122 | 1 | 5 | 205 | 229 | 428 | 6.03e-51 | 171 |
| MS.gene051781.t1 | MTR_1g086030 | 45.631 | 206 | 102 | 4 | 5 | 207 | 274 | 472 | 2.93e-50 | 171 |
| MS.gene051781.t1 | MTR_3g096330 | 43.961 | 207 | 104 | 5 | 5 | 206 | 268 | 467 | 3.04e-49 | 172 |
| MS.gene051781.t1 | MTR_7g078680 | 41.584 | 202 | 116 | 2 | 5 | 205 | 247 | 447 | 5.84e-49 | 167 |
| MS.gene051781.t1 | MTR_1g100040 | 41.584 | 202 | 116 | 2 | 5 | 205 | 248 | 448 | 4.39e-47 | 162 |
| MS.gene051781.t1 | MTR_4g120730 | 37.624 | 202 | 125 | 1 | 5 | 206 | 232 | 432 | 7.64e-46 | 158 |
| MS.gene051781.t1 | MTR_1g100060 | 39.604 | 202 | 120 | 2 | 5 | 205 | 285 | 485 | 1.35e-44 | 156 |
| MS.gene051781.t1 | MTR_3g449590 | 41.204 | 216 | 122 | 5 | 5 | 218 | 239 | 451 | 3.18e-44 | 154 |
| MS.gene051781.t1 | MTR_5g090160 | 41.667 | 204 | 114 | 3 | 5 | 205 | 237 | 438 | 3.40e-44 | 154 |
| MS.gene051781.t1 | MTR_8g028725 | 36.444 | 225 | 131 | 4 | 5 | 228 | 247 | 460 | 7.34e-44 | 153 |
| MS.gene051781.t1 | MTR_1g100050 | 38.235 | 204 | 124 | 2 | 5 | 207 | 242 | 444 | 1.72e-43 | 152 |
| MS.gene051781.t1 | MTR_7g088550 | 42.029 | 207 | 115 | 3 | 5 | 207 | 242 | 447 | 2.35e-42 | 149 |
| MS.gene051781.t1 | MTR_1g099850 | 37.129 | 202 | 125 | 2 | 5 | 205 | 247 | 447 | 2.14e-40 | 144 |
| MS.gene051781.t1 | MTR_6g048610 | 35.429 | 175 | 76 | 2 | 6 | 180 | 24 | 161 | 1.07e-24 | 95.9 |
| MS.gene051781.t1 | MTR_6g005630 | 28.365 | 208 | 125 | 7 | 8 | 209 | 222 | 411 | 1.86e-13 | 69.3 |
| MS.gene051781.t1 | MTR_2g042760 | 50.000 | 60 | 19 | 2 | 65 | 123 | 1 | 50 | 1.09e-11 | 58.9 |
| MS.gene051781.t1 | MTR_8g008700 | 27.778 | 198 | 103 | 4 | 9 | 202 | 128 | 289 | 5.29e-11 | 61.6 |
| MS.gene051781.t1 | MTR_2g103410 | 27.041 | 196 | 125 | 4 | 12 | 202 | 246 | 428 | 5.46e-11 | 62.0 |
| MS.gene051781.t1 | MTR_1g052315 | 25.225 | 222 | 140 | 6 | 8 | 220 | 245 | 449 | 7.35e-11 | 61.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene051781.t1 | AT3G42950 | 77.333 | 225 | 51 | 0 | 5 | 229 | 259 | 483 | 3.04e-132 | 381 |
| MS.gene051781.t1 | AT1G19170 | 77.778 | 225 | 50 | 0 | 5 | 229 | 281 | 505 | 6.12e-131 | 379 |
| MS.gene051781.t1 | AT3G48950 | 39.286 | 224 | 134 | 2 | 5 | 227 | 238 | 460 | 1.39e-51 | 174 |
| MS.gene051781.t1 | AT4G23500 | 41.518 | 224 | 128 | 3 | 5 | 227 | 260 | 481 | 9.67e-51 | 172 |
| MS.gene051781.t1 | AT2G23900 | 41.584 | 202 | 116 | 2 | 5 | 205 | 249 | 449 | 2.31e-50 | 171 |
| MS.gene051781.t1 | AT5G41870 | 43.750 | 208 | 114 | 3 | 5 | 212 | 238 | 442 | 2.76e-50 | 170 |
| MS.gene051781.t1 | AT4G33440 | 43.781 | 201 | 111 | 2 | 5 | 205 | 264 | 462 | 3.25e-50 | 170 |
| MS.gene051781.t1 | AT3G62110 | 44.681 | 188 | 103 | 1 | 5 | 191 | 235 | 422 | 4.31e-50 | 170 |
| MS.gene051781.t1 | AT3G62110 | 44.681 | 188 | 103 | 1 | 5 | 191 | 235 | 422 | 4.31e-50 | 170 |
| MS.gene051781.t1 | AT3G61490 | 38.053 | 226 | 136 | 3 | 5 | 229 | 237 | 459 | 9.07e-47 | 161 |
| MS.gene051781.t1 | AT3G61490 | 38.053 | 226 | 136 | 3 | 5 | 229 | 237 | 459 | 9.07e-47 | 161 |
| MS.gene051781.t1 | AT3G61490 | 38.053 | 226 | 136 | 3 | 5 | 229 | 237 | 459 | 9.07e-47 | 161 |
| MS.gene051781.t1 | AT3G61490 | 38.053 | 226 | 136 | 3 | 5 | 229 | 252 | 474 | 1.26e-46 | 161 |
| MS.gene051781.t1 | AT3G06770 | 38.916 | 203 | 123 | 1 | 5 | 207 | 148 | 349 | 4.77e-46 | 157 |
| MS.gene051781.t1 | AT3G61490 | 38.889 | 216 | 128 | 3 | 5 | 219 | 350 | 562 | 4.83e-46 | 161 |
| MS.gene051781.t1 | AT3G06770 | 38.916 | 203 | 123 | 1 | 5 | 207 | 166 | 367 | 5.45e-46 | 157 |
| MS.gene051781.t1 | AT3G06770 | 38.916 | 203 | 123 | 1 | 5 | 207 | 166 | 367 | 5.45e-46 | 157 |
| MS.gene051781.t1 | AT3G06770 | 38.916 | 203 | 123 | 1 | 5 | 207 | 235 | 436 | 1.89e-45 | 157 |
| MS.gene051781.t1 | AT3G06770 | 38.916 | 203 | 123 | 1 | 5 | 207 | 236 | 437 | 1.90e-45 | 157 |
| MS.gene051781.t1 | AT4G23820 | 41.791 | 201 | 115 | 2 | 5 | 205 | 233 | 431 | 2.18e-45 | 157 |
| MS.gene051781.t1 | AT3G16850 | 41.791 | 201 | 114 | 2 | 5 | 205 | 232 | 429 | 1.19e-42 | 150 |
| MS.gene051781.t1 | AT5G49215 | 33.654 | 208 | 135 | 2 | 5 | 210 | 233 | 439 | 2.80e-39 | 140 |
| MS.gene051781.t1 | AT5G49215 | 33.654 | 208 | 135 | 2 | 5 | 210 | 235 | 441 | 2.95e-39 | 140 |
| MS.gene051781.t1 | AT1G56710 | 29.126 | 206 | 123 | 8 | 5 | 202 | 236 | 426 | 1.36e-13 | 69.7 |
| MS.gene051781.t1 | AT1G80170 | 28.141 | 199 | 124 | 5 | 10 | 202 | 238 | 423 | 1.67e-13 | 69.3 |
| MS.gene051781.t1 | AT5G44830 | 27.136 | 199 | 126 | 5 | 9 | 202 | 145 | 329 | 4.37e-13 | 67.8 |
| MS.gene051781.t1 | AT3G15720 | 32.370 | 173 | 97 | 6 | 9 | 174 | 194 | 353 | 2.70e-12 | 65.9 |
| MS.gene051781.t1 | AT3G15720 | 32.370 | 173 | 97 | 6 | 9 | 174 | 197 | 356 | 2.74e-12 | 65.9 |
| MS.gene051781.t1 | AT3G15720 | 32.370 | 173 | 97 | 6 | 9 | 174 | 198 | 357 | 2.90e-12 | 65.9 |
| MS.gene051781.t1 | AT3G15720 | 32.370 | 173 | 97 | 6 | 9 | 174 | 134 | 293 | 3.10e-12 | 65.5 |
Find 69 sgRNAs with CRISPR-Local
Find 83 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTTGTACATGGCCGTGTAAT+AGG | 0.250601 | 8.2:+7696117 | MS.gene051781:CDS |
| AAAGATGTGCTTCTTCTTGT+AGG | 0.280475 | 8.2:-7696085 | None:intergenic |
| AATCTATATCTGTTACATTC+TGG | 0.301959 | 8.2:-7696215 | None:intergenic |
| GATCAGTATGGAATTGCTTA+TGG | 0.314592 | 8.2:+7695494 | MS.gene051781:CDS |
| ATCTTCTTGTGTGGGATTCT+AGG | 0.317361 | 8.2:+7695782 | MS.gene051781:CDS |
| CTCGCATGGAGATGGGAAAA+TGG | 0.361958 | 8.2:-7696142 | None:intergenic |
| ATAAGCTTCACCAGTGTCTA+TGG | 0.362272 | 8.2:+7695973 | MS.gene051781:CDS |
| AAGCTTATGTCTCTTATAAC+TGG | 0.364953 | 8.2:-7695958 | None:intergenic |
| TAGAGCGAACAACGAGGTTT+CGG | 0.369617 | 8.2:-7695541 | None:intergenic |
| AAACCTCGTTGTTCGCTCTA+TGG | 0.372844 | 8.2:+7695544 | MS.gene051781:CDS |
| ATCTATATCTGTTACATTCT+GGG | 0.380122 | 8.2:-7696214 | None:intergenic |
| AAGAGTGGTTGGGATCAGTA+TGG | 0.421829 | 8.2:+7695482 | MS.gene051781:CDS |
| TCTTGTGTGGGATTCTAGGC+GGG | 0.427041 | 8.2:+7695786 | MS.gene051781:CDS |
| TTGTACATGGCCGTGTAATA+GGG | 0.427652 | 8.2:+7696118 | MS.gene051781:CDS |
| ATGTGCGGCAAATAACTTAT+CGG | 0.434253 | 8.2:+7695845 | MS.gene051781:CDS |
| GTAGGGTCATATCCATCATC+AGG | 0.436532 | 8.2:-7695928 | None:intergenic |
| GTTTCGGATCAATATATTCA+TGG | 0.446289 | 8.2:-7695525 | None:intergenic |
| CTTGCTCATTGTACCGATCA+AGG | 0.450350 | 8.2:-7696167 | None:intergenic |
| GTACAATGAGCAAGGACAAC+TGG | 0.482555 | 8.2:+7696176 | MS.gene051781:CDS |
| CAATAGCAATAAAGAGTGGT+TGG | 0.485498 | 8.2:+7695471 | MS.gene051781:CDS |
| TCAAGGTTCTCGCATGGAGA+TGG | 0.487309 | 8.2:-7696150 | None:intergenic |
| CGCACATATCCGCCTCGTCC+AGG | 0.489333 | 8.2:-7695829 | None:intergenic |
| TTTCAGTGTGCATTTGTACA+TGG | 0.494342 | 8.2:+7696105 | MS.gene051781:CDS |
| TACAATGAACACCCTGATGA+TGG | 0.498736 | 8.2:+7695916 | MS.gene051781:CDS |
| TCGTTGTTCGCTCTATGGTC+AGG | 0.500862 | 8.2:+7695549 | MS.gene051781:CDS |
| CTTATAACTGGAAGTGCCGT+AGG | 0.502358 | 8.2:-7695946 | None:intergenic |
| AACAGTGCTGGTATCTCAAT+AGG | 0.503794 | 8.2:+7695718 | MS.gene051781:intron |
| AAGATTCTCCACCGTGACAT+TGG | 0.511289 | 8.2:-7695764 | None:intergenic |
| ATCTGTTACATTCTGGGACA+TGG | 0.514970 | 8.2:-7696208 | None:intergenic |
| CAAGGTTCTCGCATGGAGAT+GGG | 0.517048 | 8.2:-7696149 | None:intergenic |
| CGGTGGAGAATCTTCTTGTG+TGG | 0.518175 | 8.2:+7695773 | MS.gene051781:CDS |
| AATAGCAATAAAGAGTGGTT+GGG | 0.528054 | 8.2:+7695472 | MS.gene051781:CDS |
| TCAATAGGCAGTGAGATGTC+TGG | 0.537106 | 8.2:+7695733 | MS.gene051781:CDS |
| TTGCGAGGATATGTTGATAG+AGG | 0.543214 | 8.2:+7695421 | MS.gene051781:CDS |
| TGGCCATGGAGTTCGTGTGC+CGG | 0.544487 | 8.2:+7695993 | MS.gene051781:CDS |
| TTCACCAGTGTCTATGGCCA+TGG | 0.553675 | 8.2:+7695979 | MS.gene051781:CDS |
| GGTGGAGAATCTTCTTGTGT+GGG | 0.553858 | 8.2:+7695774 | MS.gene051781:CDS |
| CGAAAAGTTACATTTCTCAC+AGG | 0.557026 | 8.2:-7696042 | None:intergenic |
| CGGATCAATATATTCATGGA+AGG | 0.557077 | 8.2:-7695521 | None:intergenic |
| ATAAAGACTGCACCTGGACG+AGG | 0.558213 | 8.2:+7695817 | MS.gene051781:CDS |
| AACTCCATGGCCATAGACAC+TGG | 0.562611 | 8.2:-7695983 | None:intergenic |
| TTCTTGTGTGGGATTCTAGG+CGG | 0.572910 | 8.2:+7695785 | MS.gene051781:CDS |
| GGGATTCTAGGCGGGGTGTG+AGG | 0.573008 | 8.2:+7695794 | MS.gene051781:CDS |
| CTTGTGTGGGATTCTAGGCG+GGG | 0.583944 | 8.2:+7695787 | MS.gene051781:CDS |
| CTCCATGCGAGAACCTTGAT+CGG | 0.593522 | 8.2:+7696154 | MS.gene051781:CDS |
| TACCGATCAAGGTTCTCGCA+TGG | 0.601717 | 8.2:-7696156 | None:intergenic |
| CGTGTGCCGGTACGTATTCA+CGG | 0.606425 | 8.2:+7696006 | MS.gene051781:CDS |
| GTGAGGATAAAGACTGCACC+TGG | 0.609634 | 8.2:+7695811 | MS.gene051781:CDS |
| ACGTTTGAGAATGTCCGTGT+TGG | 0.610358 | 8.2:+7695874 | MS.gene051781:CDS |
| AGTATGGAATTGCTTATGGA+AGG | 0.613405 | 8.2:+7695498 | MS.gene051781:CDS |
| AGAGGACTGTTACATAAGCG+TGG | 0.614203 | 8.2:+7695439 | MS.gene051781:CDS |
| TCACTACCGTGAATACGTAC+CGG | 0.621904 | 8.2:-7696012 | None:intergenic |
| TGATGATGGATATGACCCTA+CGG | 0.624117 | 8.2:+7695930 | MS.gene051781:CDS |
| TTATAACTGGAAGTGCCGTA+GGG | 0.625551 | 8.2:-7695945 | None:intergenic |
| GAGGACTGTTACATAAGCGT+GGG | 0.628169 | 8.2:+7695440 | MS.gene051781:CDS |
| GTACCGGCACACGAACTCCA+TGG | 0.628417 | 8.2:-7695996 | None:intergenic |
| ATAGGCAGTGAGATGTCTGG+TGG | 0.634420 | 8.2:+7695736 | MS.gene051781:CDS |
| CTGGACGAGGCGGATATGTG+CGG | 0.643013 | 8.2:+7695830 | MS.gene051781:CDS |
| CTTGATCGGTACAATGAGCA+AGG | 0.653027 | 8.2:+7696168 | MS.gene051781:CDS |
| GGAAAATGGTCCCTATTACA+CGG | 0.656452 | 8.2:-7696128 | None:intergenic |
| GATGCAATAGCAATAAAGAG+TGG | 0.657676 | 8.2:+7695467 | MS.gene051781:CDS |
| TAGGCAGTGAGATGTCTGGT+GGG | 0.661719 | 8.2:+7695737 | MS.gene051781:CDS |
| TGGTGGGATATCCAATGTCA+CGG | 0.666291 | 8.2:+7695753 | MS.gene051781:CDS |
| TAGGGTCATATCCATCATCA+GGG | 0.672022 | 8.2:-7695927 | None:intergenic |
| AAGACTGCACCTGGACGAGG+CGG | 0.675169 | 8.2:+7695820 | MS.gene051781:CDS |
| GGCTTGCACAGACTCTTGCG+AGG | 0.691384 | 8.2:+7695406 | MS.gene051781:CDS |
| TCTTCATCACAATTCCAACA+CGG | 0.739063 | 8.2:-7695888 | None:intergenic |
| TGGGATATCCAATGTCACGG+TGG | 0.786411 | 8.2:+7695756 | MS.gene051781:CDS |
| TGACCATAGAGCGAACAACG+AGG | 0.809677 | 8.2:-7695547 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATCATAATATATGATAAGA+AGG | - | chr8.2:7695670-7695689 | None:intergenic | 15.0% |
| !! | TCATAAAAAAATATGCCAAA+AGG | - | chr8.2:7695620-7695639 | None:intergenic | 20.0% |
| ! | AATCTATATCTGTTACATTC+TGG | - | chr8.2:7696218-7696237 | None:intergenic | 25.0% |
| ! | ATCTATATCTGTTACATTCT+GGG | - | chr8.2:7696217-7696236 | None:intergenic | 25.0% |
| AAAAAATATGCCAAAAGGCA+TGG | - | chr8.2:7695615-7695634 | None:intergenic | 30.0% | |
| AAGCTTATGTCTCTTATAAC+TGG | - | chr8.2:7695961-7695980 | None:intergenic | 30.0% | |
| AATAGCAATAAAGAGTGGTT+GGG | + | chr8.2:7695472-7695491 | MS.gene051781:CDS | 30.0% | |
| GTTTCGGATCAATATATTCA+TGG | - | chr8.2:7695528-7695547 | None:intergenic | 30.0% | |
| TTTATGAAATGAAACAGTGC+TGG | + | chr8.2:7695706-7695725 | MS.gene051781:intron | 30.0% | |
| ! | AAAAATATGCCAAAAGGCAT+GGG | - | chr8.2:7695614-7695633 | None:intergenic | 30.0% |
| AAAGATGTGCTTCTTCTTGT+AGG | - | chr8.2:7696088-7696107 | None:intergenic | 35.0% | |
| AGTATGGAATTGCTTATGGA+AGG | + | chr8.2:7695498-7695517 | MS.gene051781:CDS | 35.0% | |
| ATGTGCGGCAAATAACTTAT+CGG | + | chr8.2:7695845-7695864 | MS.gene051781:CDS | 35.0% | |
| CAATAGCAATAAAGAGTGGT+TGG | + | chr8.2:7695471-7695490 | MS.gene051781:CDS | 35.0% | |
| CGAAAAGTTACATTTCTCAC+AGG | - | chr8.2:7696045-7696064 | None:intergenic | 35.0% | |
| CGGATCAATATATTCATGGA+AGG | - | chr8.2:7695524-7695543 | None:intergenic | 35.0% | |
| GATCAGTATGGAATTGCTTA+TGG | + | chr8.2:7695494-7695513 | MS.gene051781:CDS | 35.0% | |
| GATGCAATAGCAATAAAGAG+TGG | + | chr8.2:7695467-7695486 | MS.gene051781:CDS | 35.0% | |
| TCTTCATCACAATTCCAACA+CGG | - | chr8.2:7695891-7695910 | None:intergenic | 35.0% | |
| TTTCAGTGTGCATTTGTACA+TGG | + | chr8.2:7696105-7696124 | MS.gene051781:CDS | 35.0% | |
| ATAAGCTTCACCAGTGTCTA+TGG | + | chr8.2:7695973-7695992 | MS.gene051781:CDS | 40.0% | |
| ATCTTCTTGTGTGGGATTCT+AGG | + | chr8.2:7695782-7695801 | MS.gene051781:CDS | 40.0% | |
| GGAAAATGGTCCCTATTACA+CGG | - | chr8.2:7696131-7696150 | None:intergenic | 40.0% | |
| TACAATGAACACCCTGATGA+TGG | + | chr8.2:7695916-7695935 | MS.gene051781:CDS | 40.0% | |
| TAGGGTCATATCCATCATCA+GGG | - | chr8.2:7695930-7695949 | None:intergenic | 40.0% | |
| TTGTACATGGCCGTGTAATA+GGG | + | chr8.2:7696118-7696137 | MS.gene051781:CDS | 40.0% | |
| TTTGTACATGGCCGTGTAAT+AGG | + | chr8.2:7696117-7696136 | MS.gene051781:CDS | 40.0% | |
| ! | ACTTTTCGTGACATGTCAGT+TGG | + | chr8.2:7696057-7696076 | MS.gene051781:CDS | 40.0% |
| ! | CTTTTCGTGACATGTCAGTT+GGG | + | chr8.2:7696058-7696077 | MS.gene051781:CDS | 40.0% |
| ! | TTGCGAGGATATGTTGATAG+AGG | + | chr8.2:7695421-7695440 | MS.gene051781:CDS | 40.0% |
| !! | AACAGTGCTGGTATCTCAAT+AGG | + | chr8.2:7695718-7695737 | MS.gene051781:intron | 40.0% |
| !! | ATCTGTTACATTCTGGGACA+TGG | - | chr8.2:7696211-7696230 | None:intergenic | 40.0% |
| !! | TGATGATGGATATGACCCTA+CGG | + | chr8.2:7695930-7695949 | MS.gene051781:CDS | 40.0% |
| !! | TTATAACTGGAAGTGCCGTA+GGG | - | chr8.2:7695948-7695967 | None:intergenic | 40.0% |
| AAACCTCGTTGTTCGCTCTA+TGG | + | chr8.2:7695544-7695563 | MS.gene051781:CDS | 45.0% | |
| AAGAGTGGTTGGGATCAGTA+TGG | + | chr8.2:7695482-7695501 | MS.gene051781:CDS | 45.0% | |
| AAGATTCTCCACCGTGACAT+TGG | - | chr8.2:7695767-7695786 | None:intergenic | 45.0% | |
| ACGTTTGAGAATGTCCGTGT+TGG | + | chr8.2:7695874-7695893 | MS.gene051781:CDS | 45.0% | |
| AGAGGACTGTTACATAAGCG+TGG | + | chr8.2:7695439-7695458 | MS.gene051781:CDS | 45.0% | |
| CTTGATCGGTACAATGAGCA+AGG | + | chr8.2:7696168-7696187 | MS.gene051781:CDS | 45.0% | |
| GAGGACTGTTACATAAGCGT+GGG | + | chr8.2:7695440-7695459 | MS.gene051781:CDS | 45.0% | |
| GGTGGAGAATCTTCTTGTGT+GGG | + | chr8.2:7695774-7695793 | MS.gene051781:CDS | 45.0% | |
| GTACAATGAGCAAGGACAAC+TGG | + | chr8.2:7696176-7696195 | MS.gene051781:CDS | 45.0% | |
| GTAGGGTCATATCCATCATC+AGG | - | chr8.2:7695931-7695950 | None:intergenic | 45.0% | |
| TAGAGCGAACAACGAGGTTT+CGG | - | chr8.2:7695544-7695563 | None:intergenic | 45.0% | |
| TCAATAGGCAGTGAGATGTC+TGG | + | chr8.2:7695733-7695752 | MS.gene051781:CDS | 45.0% | |
| TCACTACCGTGAATACGTAC+CGG | - | chr8.2:7696015-7696034 | None:intergenic | 45.0% | |
| TGGTGGGATATCCAATGTCA+CGG | + | chr8.2:7695753-7695772 | MS.gene051781:CDS | 45.0% | |
| TTCTTGTGTGGGATTCTAGG+CGG | + | chr8.2:7695785-7695804 | MS.gene051781:CDS | 45.0% | |
| ! | CTTGCTCATTGTACCGATCA+AGG | - | chr8.2:7696170-7696189 | None:intergenic | 45.0% |
| !! | CTTATAACTGGAAGTGCCGT+AGG | - | chr8.2:7695949-7695968 | None:intergenic | 45.0% |
| AACTCCATGGCCATAGACAC+TGG | - | chr8.2:7695986-7696005 | None:intergenic | 50.0% | |
| ATAAAGACTGCACCTGGACG+AGG | + | chr8.2:7695817-7695836 | MS.gene051781:CDS | 50.0% | |
| ATAGGCAGTGAGATGTCTGG+TGG | + | chr8.2:7695736-7695755 | MS.gene051781:CDS | 50.0% | |
| ATGGGCCATGCAGAAAGGTA+CGG | - | chr8.2:7695596-7695615 | None:intergenic | 50.0% | |
| CAAGGTTCTCGCATGGAGAT+GGG | - | chr8.2:7696152-7696171 | None:intergenic | 50.0% | |
| CGGTGGAGAATCTTCTTGTG+TGG | + | chr8.2:7695773-7695792 | MS.gene051781:CDS | 50.0% | |
| CTAACCCGTACCTTTCTGCA+TGG | + | chr8.2:7695588-7695607 | MS.gene051781:intron | 50.0% | |
| CTCCATGCGAGAACCTTGAT+CGG | + | chr8.2:7696154-7696173 | MS.gene051781:CDS | 50.0% | |
| CTCGCATGGAGATGGGAAAA+TGG | - | chr8.2:7696145-7696164 | None:intergenic | 50.0% | |
| GTGAGGATAAAGACTGCACC+TGG | + | chr8.2:7695811-7695830 | MS.gene051781:CDS | 50.0% | |
| TACCGATCAAGGTTCTCGCA+TGG | - | chr8.2:7696159-7696178 | None:intergenic | 50.0% | |
| TAGGCAGTGAGATGTCTGGT+GGG | + | chr8.2:7695737-7695756 | MS.gene051781:CDS | 50.0% | |
| TCAAGGTTCTCGCATGGAGA+TGG | - | chr8.2:7696153-7696172 | None:intergenic | 50.0% | |
| TCGTTGTTCGCTCTATGGTC+AGG | + | chr8.2:7695549-7695568 | MS.gene051781:CDS | 50.0% | |
| TCTTGTGTGGGATTCTAGGC+GGG | + | chr8.2:7695786-7695805 | MS.gene051781:CDS | 50.0% | |
| TGACCATAGAGCGAACAACG+AGG | - | chr8.2:7695550-7695569 | None:intergenic | 50.0% | |
| TGGGATATCCAATGTCACGG+TGG | + | chr8.2:7695756-7695775 | MS.gene051781:CDS | 50.0% | |
| TTCACCAGTGTCTATGGCCA+TGG | + | chr8.2:7695979-7695998 | MS.gene051781:CDS | 50.0% | |
| !! | AGGTACGGGTTAGTTGAGCT+AGG | - | chr8.2:7695581-7695600 | None:intergenic | 50.0% |
| !! | GGTACGGGTTAGTTGAGCTA+GGG | - | chr8.2:7695580-7695599 | None:intergenic | 50.0% |
| AAGGCATGGGCCATGCAGAA+AGG | - | chr8.2:7695601-7695620 | None:intergenic | 55.0% | |
| CTTGTGTGGGATTCTAGGCG+GGG | + | chr8.2:7695787-7695806 | MS.gene051781:CDS | 55.0% | |
| ! | CGTGTGCCGGTACGTATTCA+CGG | + | chr8.2:7696006-7696025 | MS.gene051781:CDS | 55.0% |
| ! | TCTGCATGGCCCATGCCTTT+TGG | + | chr8.2:7695602-7695621 | MS.gene051781:intron | 55.0% |
| ! | TGGGCCATGCAGAAAGGTAC+GGG | - | chr8.2:7695595-7695614 | None:intergenic | 55.0% |
| AAGACTGCACCTGGACGAGG+CGG | + | chr8.2:7695820-7695839 | MS.gene051781:CDS | 60.0% | |
| CTGGACGAGGCGGATATGTG+CGG | + | chr8.2:7695830-7695849 | MS.gene051781:CDS | 60.0% | |
| GGCTTGCACAGACTCTTGCG+AGG | + | chr8.2:7695406-7695425 | MS.gene051781:CDS | 60.0% | |
| TGGCCATGGAGTTCGTGTGC+CGG | + | chr8.2:7695993-7696012 | MS.gene051781:CDS | 60.0% | |
| ! | GTACCGGCACACGAACTCCA+TGG | - | chr8.2:7695999-7696018 | None:intergenic | 60.0% |
| CGCACATATCCGCCTCGTCC+AGG | - | chr8.2:7695832-7695851 | None:intergenic | 65.0% | |
| GGGATTCTAGGCGGGGTGTG+AGG | + | chr8.2:7695794-7695813 | MS.gene051781:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.2 | gene | 7695404 | 7696248 | 7695404 | ID=MS.gene051781 |
| chr8.2 | mRNA | 7695404 | 7696248 | 7695404 | ID=MS.gene051781.t1;Parent=MS.gene051781 |
| chr8.2 | exon | 7695404 | 7695570 | 7695404 | ID=MS.gene051781.t1.exon1;Parent=MS.gene051781.t1 |
| chr8.2 | CDS | 7695404 | 7695570 | 7695404 | ID=cds.MS.gene051781.t1;Parent=MS.gene051781.t1 |
| chr8.2 | exon | 7695723 | 7696248 | 7695723 | ID=MS.gene051781.t1.exon2;Parent=MS.gene051781.t1 |
| chr8.2 | CDS | 7695723 | 7696248 | 7695723 | ID=cds.MS.gene051781.t1;Parent=MS.gene051781.t1 |
| Gene Sequence |
| Protein sequence |
