AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene97685

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene97685.t1 MTR_0305s0020 99.742 774 2 0 1 774 1 774 0.0 1604
MS.gene97685.t1 MTR_7g092770 93.557 776 47 3 1 774 1 775 0.0 1520
MS.gene97685.t1 MTR_4g066150 82.710 775 128 4 1 774 1 770 0.0 1335
MS.gene97685.t1 MTR_3g027150 68.608 790 225 8 7 774 34 822 0.0 1156
MS.gene97685.t1 MTR_4g023460 71.561 756 209 5 24 774 388 1142 0.0 1152
MS.gene97685.t1 MTR_5g010390 68.597 777 234 4 6 774 233 1007 0.0 1147
MS.gene97685.t1 MTR_0291s0010 67.342 790 239 8 3 774 9 797 0.0 1134
MS.gene97685.t1 MTR_4g033215 66.150 774 250 8 8 774 276 1044 0.0 1066
MS.gene97685.t1 MTR_8g031270 60.385 780 291 7 6 774 231 1003 0.0 1003
MS.gene97685.t1 MTR_7g076900 59.391 788 290 9 8 774 235 1013 0.0 974
MS.gene97685.t1 MTR_4g057675 58.599 785 302 11 2 774 10 783 0.0 891
MS.gene97685.t1 MTR_4g071870 56.306 785 286 12 2 774 10 749 0.0 858
MS.gene97685.t1 MTR_4g107850 53.351 776 318 14 18 774 288 1038 0.0 808
MS.gene97685.t1 MTR_6g027540 52.163 763 318 13 32 774 274 1009 0.0 781
MS.gene97685.t1 MTR_6g028050 48.231 763 357 13 30 774 284 1026 0.0 736
MS.gene97685.t1 MTR_1g015540 48.590 780 369 13 12 774 9 773 0.0 699
MS.gene97685.t1 MTR_5g096980 41.154 780 423 12 8 774 7 763 0.0 595
MS.gene97685.t1 MTR_4g023250 67.692 130 40 1 644 773 1 128 5.59e-54 182
MS.gene97685.t1 MTR_4g023230 50.000 122 46 1 561 682 49 155 2.50e-32 123
MS.gene97685.t1 MTR_4g023390 50.962 104 29 1 647 750 16 97 3.20e-25 100
MS.gene97685.t1 MTR_4g023240 66.667 60 20 0 495 554 10 69 1.74e-20 86.3
MS.gene97685.t1 MTR_7g052280 53.165 79 12 3 248 325 1 55 2.77e-18 79.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene97685.t1 AT3G57880 91.731 774 63 1 1 774 1 773 0.0 1494
MS.gene97685.t1 AT3G57880 91.731 774 63 1 1 774 1 773 0.0 1494
MS.gene97685.t1 AT3G57880 91.731 774 63 1 1 774 1 773 0.0 1494
MS.gene97685.t1 AT3G57880 91.731 774 63 1 1 774 1 773 0.0 1494
MS.gene97685.t1 AT1G51570 88.789 776 85 2 1 774 1 776 0.0 1446
MS.gene97685.t1 AT5G12970 81.677 775 135 4 1 774 1 769 0.0 1317
MS.gene97685.t1 AT5G06850 68.662 785 228 8 7 774 11 794 0.0 1156
MS.gene97685.t1 AT4G11610 67.481 778 240 5 6 774 238 1011 0.0 1132
MS.gene97685.t1 AT4G11610 67.481 778 240 5 6 774 234 1007 0.0 1132
MS.gene97685.t1 AT4G11610 67.481 778 240 5 6 774 101 874 0.0 1130
MS.gene97685.t1 AT5G48060 65.897 780 252 8 7 774 259 1036 0.0 1103
MS.gene97685.t1 AT1G22610 66.203 790 246 9 1 774 245 1029 0.0 1080
MS.gene97685.t1 AT4G00700 59.335 782 303 6 6 774 227 1006 0.0 969
MS.gene97685.t1 AT4G00700 59.335 782 303 6 6 774 227 1006 0.0 969
MS.gene97685.t1 AT3G61300 58.869 778 291 13 4 774 217 972 0.0 946
MS.gene97685.t1 AT1G04150 58.228 790 289 14 8 774 241 1012 0.0 926
MS.gene97685.t1 AT4G20080 58.290 772 304 11 9 774 15 774 0.0 925
MS.gene97685.t1 AT1G74720 52.506 798 341 13 2 774 297 1081 0.0 825
MS.gene97685.t1 AT3G03680 52.734 768 314 15 32 774 274 1017 0.0 783
MS.gene97685.t1 AT5G17980 48.810 756 356 12 30 774 314 1049 0.0 748
MS.gene97685.t1 AT5G03435 40.798 777 403 25 7 768 6 740 8.32e-168 502
MS.gene97685.t1 AT3G61720 38.985 808 435 21 7 774 6 795 3.20e-167 503
MS.gene97685.t1 AT5G03435 43.154 577 293 17 7 574 6 556 1.22e-140 426
MS.gene97685.t1 AT5G44760 51.000 400 149 9 8 400 5 364 1.14e-123 379
MS.gene97685.t1 AT5G44760 36.496 137 38 1 540 676 364 451 6.84e-20 94.0
MS.gene97685.t1 AT1G03370 28.980 245 155 11 41 281 3 232 9.06e-13 72.4
MS.gene97685.t1 AT1G03370 28.980 245 155 11 41 281 3 232 9.82e-13 72.4

Find 218 sgRNAs with CRISPR-Local

Find 246 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGCAATTCCTTTGCAGTTTA+TGG 0.027359 1.1:-39723508 MS.gene97685:CDS
TCATATCTTGTTTATAATAT+TGG 0.175025 1.1:-39722548 MS.gene97685:CDS
ACCTCTTCCTGATTGGAATT+TGG 0.179060 1.1:-39722486 MS.gene97685:CDS
TGAATCAGAACTGTTGTAAT+TGG 0.188345 1.1:+39722568 None:intergenic
TGCGGCGCCAAAGGACTATC+TGG 0.234328 1.1:+39723963 None:intergenic
GCTTATTGTGTAGCAAAATA+TGG 0.251693 1.1:-39723195 MS.gene97685:CDS
GGCTAATTGCTGCGGGAAAA+TGG 0.272171 1.1:-39722618 MS.gene97685:CDS
GCATCTGAGTGCCAAGCTTC+TGG 0.277323 1.1:+39723849 None:intergenic
CCCAAGTGGTGTGAAGAAAA+TGG 0.290205 1.1:-39722926 MS.gene97685:CDS
CTCCTAAGCTTTGGTATTTG+AGG 0.293908 1.1:-39723770 MS.gene97685:CDS
CGGTGCCGCTTAATTTCTTC+AGG 0.299166 1.1:-39722090 MS.gene97685:CDS
GCCAAACAGCTCTGGAAATC+TGG 0.301858 1.1:-39723300 MS.gene97685:CDS
CACGGCCTTCTGACATTGTT+CGG 0.307253 1.1:-39722354 MS.gene97685:CDS
AGAAGGTGGTTATCATGTTT+TGG 0.311177 1.1:-39723361 MS.gene97685:CDS
CACATGAGGGTTTGTCTAGA+AGG 0.326790 1.1:-39723378 MS.gene97685:CDS
TAGAAAGGGTGATAAGGTTA+AGG 0.328443 1.1:-39723922 MS.gene97685:CDS
CCCAATACTTCTTCTTTGTT+CGG 0.334931 1.1:+39723537 None:intergenic
TTGGAATTTGGCACTATAGA+TGG 0.341735 1.1:-39722474 MS.gene97685:CDS
TTTCTCGAAGGACCGGCTTC+AGG 0.344206 1.1:-39724087 MS.gene97685:CDS
GAAGGACCGGCTTCAGGCCT+CGG 0.355700 1.1:-39724081 MS.gene97685:CDS
TCCAGAGCTGTTTGGCCGTT+GGG 0.357398 1.1:+39723307 None:intergenic
CCGAACAAAGAAGAAGTATT+GGG 0.371136 1.1:-39723537 MS.gene97685:CDS
TTCCTTTACCTCTTCCTGAT+TGG 0.374360 1.1:-39722493 MS.gene97685:CDS
CCGATGCTCTTGCAAATATT+AGG 0.375111 1.1:-39723809 MS.gene97685:CDS
CCTTTATGTGAGGGTTGTTA+AGG 0.377947 1.1:-39724240 MS.gene97685:CDS
GTTAAGCTCGGGAACTATAA+AGG 0.383225 1.1:-39724164 MS.gene97685:CDS
CTTTGGCGCCGCAATGGTAT+AGG 0.384411 1.1:-39723953 MS.gene97685:CDS
TTTATTTATCTCCTAAGCTT+TGG 0.384714 1.1:-39723779 MS.gene97685:CDS
TTTGCACCTCCAGCTTTGTC+AGG 0.385021 1.1:+39723039 None:intergenic
TCCTAAGCTTTGGTATTTGA+GGG 0.385923 1.1:-39723769 MS.gene97685:CDS
GGCTAATTTCTTCAGAATCA+TGG 0.388398 1.1:-39722653 MS.gene97685:CDS
TCAGATGCCGCGACTGTTAG+TGG 0.391111 1.1:-39723834 MS.gene97685:CDS
CCGAGCTTAACTTCGGCATA+AGG 0.395229 1.1:+39724176 None:intergenic
CAGCTCTGGAAATCTGGAAT+TGG 0.397726 1.1:-39723294 MS.gene97685:CDS
ACAAACAGTGCCGTTGCTCT+TGG 0.398892 1.1:+39722226 None:intergenic
TATCAATGATTGTCCTTGTT+CGG 0.399321 1.1:+39723160 None:intergenic
GAGAGCCGAGTGTCCATGTT+AGG 0.399650 1.1:+39722436 None:intergenic
GGTTTGATCAAATTTGCAAT+TGG 0.408748 1.1:-39722597 MS.gene97685:CDS
CCTTAACAACCCTCACATAA+AGG 0.412120 1.1:+39724240 None:intergenic
GCCCAACGGCCAAACAGCTC+TGG 0.415222 1.1:-39723308 MS.gene97685:CDS
GGAATTGGTGTTCTTGAAGT+TGG 0.415516 1.1:-39723279 MS.gene97685:CDS
TTTGAATGAGGTTCCGAAAC+GGG 0.416032 1.1:-39723991 MS.gene97685:CDS
GAGAGTTAATGCTTGCTGTT+TGG 0.419766 1.1:-39723899 MS.gene97685:CDS
GGGTGTATATAGTGCATCTT+TGG 0.421466 1.1:+39722826 None:intergenic
TTGCCTTCAAAGGATGTTAC+CGG 0.422723 1.1:-39724209 MS.gene97685:CDS
TCTTTCAACAGAAAATCTTC+AGG 0.424219 1.1:+39724344 None:intergenic
AACCAATCCTGAATGGAATC+AGG 0.430195 1.1:-39724117 MS.gene97685:CDS
AGACTTACAGCCAACTGATA+AGG 0.432910 1.1:-39723727 MS.gene97685:CDS
GGCTAAGGATTTGCCTTCAA+AGG 0.432921 1.1:-39724219 MS.gene97685:CDS
TGTCAGAAGGCCGTGAAGTC+GGG 0.434203 1.1:+39722362 None:intergenic
AAAATCAGCGGCTCCTCAAA+TGG 0.439031 1.1:+39723582 None:intergenic
TTCCAGAGCTGTTTGGCCGT+TGG 0.439868 1.1:+39723306 None:intergenic
TTGACACATTCCCGACTTCA+CGG 0.441800 1.1:-39722372 MS.gene97685:CDS
GTATAGGTTGGAGGATAGAA+AGG 0.443612 1.1:-39723937 MS.gene97685:CDS
CGCTGAGCCACCGCTGAGAA+AGG 0.446361 1.1:-39722734 MS.gene97685:CDS
TCCAGATTTCCAGAGCTGTT+TGG 0.447417 1.1:+39723299 None:intergenic
TTCCTTTGCAGTTTATGGAC+AGG 0.449319 1.1:-39723503 MS.gene97685:CDS
AAGAAATTAAATTTGCAAGT+AGG 0.449686 1.1:-39723404 MS.gene97685:CDS
AACTCTTCATCAAGTTCATC+CGG 0.450581 1.1:+39722394 None:intergenic
ACCACAAACCGGTGAATACT+AGG 0.450690 1.1:-39723473 MS.gene97685:CDS
GACTTACAGCCAACTGATAA+GGG 0.456275 1.1:-39723726 MS.gene97685:CDS
GAATTGGTGTTCTTGAAGTT+GGG 0.456895 1.1:-39723278 MS.gene97685:CDS
CCGGCTTCAGGCCTCGGTGT+TGG 0.457897 1.1:-39724075 MS.gene97685:CDS
GCTTCAGGCCTCGGTGTTGG+AGG 0.458158 1.1:-39724072 MS.gene97685:CDS
CCAGCTGGCTAACGGTCAAC+GGG 0.460211 1.1:+39722806 None:intergenic
TTCATCCGGATGAGCTGAAT+CGG 0.463142 1.1:+39722408 None:intergenic
AGTTGGGATATTGAGTGCTC+AGG 0.463537 1.1:-39723262 MS.gene97685:CDS
AGAAAGGGTGATAAGGTTAA+GGG 0.464699 1.1:-39723921 MS.gene97685:CDS
TGCTGTTTGGATGGGTACAC+AGG 0.468622 1.1:-39723886 MS.gene97685:CDS
TATAGTGCCAAATTCCAATC+AGG 0.471795 1.1:+39722479 None:intergenic
CCTTGCACTGTGATTACAAT+TGG 0.473689 1.1:-39723090 MS.gene97685:CDS
CCCGTTGACCGTTAGCCAGC+TGG 0.473816 1.1:-39722806 MS.gene97685:CDS
AACTGATAAGGGTAGATATC+CGG 0.474666 1.1:-39723715 MS.gene97685:CDS
ATTCAAGGATTGGTAAGGTA+AGG 0.476487 1.1:-39723014 MS.gene97685:CDS
GAAAATGGGTGAAATTCAAT+TGG 0.477497 1.1:-39722911 MS.gene97685:CDS
ACTGTTGGTAAGATAAGTTC+AGG 0.477704 1.1:+39722517 None:intergenic
TGTGAGGGTTGTTAAGGCTA+AGG 0.478542 1.1:-39724234 MS.gene97685:CDS
GGAGGATAGAAAGGGTGATA+AGG 0.479059 1.1:-39723928 MS.gene97685:CDS
GCTAATTTCTTCAGAATCAT+GGG 0.479725 1.1:-39722652 MS.gene97685:CDS
AACCTGATTCCATTCAGGAT+TGG 0.483996 1.1:+39724115 None:intergenic
TTCCAATCAGGAAGAGGTAA+AGG 0.484097 1.1:+39722491 None:intergenic
CTGGAGGTGCAAAAGATTCA+AGG 0.487820 1.1:-39723029 MS.gene97685:CDS
CTTATTGTGTAGCAAAATAT+GGG 0.488815 1.1:-39723194 MS.gene97685:CDS
ATGAAGCATTTCCAGAAGCT+TGG 0.489119 1.1:-39723860 MS.gene97685:CDS
TTTGAGGGTTAATGTGATTG+AGG 0.490505 1.1:-39723754 MS.gene97685:CDS
CGGTCAGAAGGGCCACAACT+TGG 0.491080 1.1:+39722158 None:intergenic
GCGGCGCCAAAGGACTATCT+GGG 0.491089 1.1:+39723964 None:intergenic
GTTGTGAAGGACGACTTCAT+TGG 0.491403 1.1:-39724029 MS.gene97685:CDS
GTTGAGTATATGCTTGATGT+TGG 0.492238 1.1:-39722706 MS.gene97685:CDS
GGCTGCAGTCTTTACTGAGC+TGG 0.495480 1.1:-39722255 MS.gene97685:CDS
TCCAGCTGGCTAACGGTCAA+CGG 0.496502 1.1:+39722805 None:intergenic
AAAGAGACCAAACCCCATCT+TGG 0.497107 1.1:-39724326 MS.gene97685:CDS
CTCAACAAGGTCATATGTGC+TGG 0.498939 1.1:+39724274 None:intergenic
TCCATGTTAGGAGGGTGTCT+TGG 0.501157 1.1:+39722448 None:intergenic
TTAGCCAGCTGGACAGTTTG+AGG 0.501719 1.1:-39722795 MS.gene97685:CDS
CAAGTTGTGGCCCTTCTGAC+CGG 0.503387 1.1:-39722157 MS.gene97685:CDS
TCCGAACAAAGAAGAAGTAT+TGG 0.503767 1.1:-39723538 MS.gene97685:CDS
TCACGCCGATTCAGCTCATC+CGG 0.505053 1.1:-39722413 MS.gene97685:CDS
GTTAATGCTTGCTGTTTGGA+TGG 0.505912 1.1:-39723895 MS.gene97685:CDS
TGTTGCTGCGGAACCATTTG+AGG 0.513683 1.1:-39723595 MS.gene97685:CDS
ATGTCAGAAGGCCGTGAAGT+CGG 0.514758 1.1:+39722361 None:intergenic
AACAGAAAATCTTCAGGCGG+TGG 0.514836 1.1:+39724350 None:intergenic
AGAAGAAAACCAATCCTGAA+TGG 0.515488 1.1:-39724124 MS.gene97685:CDS
ACCCTCAAATACCAAAGCTT+AGG 0.516986 1.1:+39723768 None:intergenic
AAACGTAAATTCCGGTCAGA+AGG 0.518768 1.1:+39722146 None:intergenic
GGTGCAAAAGATTCAAGGAT+TGG 0.520817 1.1:-39723024 MS.gene97685:CDS
ATGTCTCAAAACGTAAATTC+CGG 0.524528 1.1:+39722138 None:intergenic
GATCGACTTCGAAGCATAGC+TGG 0.524982 1.1:-39722322 MS.gene97685:CDS
CACCACTTGGGTGAAGAACT+AGG 0.526449 1.1:+39722938 None:intergenic
AGCCGAGTGTCCATGTTAGG+AGG 0.527424 1.1:+39722439 None:intergenic
TTGCATGGTCCTGACAAAGC+TGG 0.527750 1.1:-39723048 MS.gene97685:CDS
GCCAAATTCCAATCAGGAAG+AGG 0.528138 1.1:+39722485 None:intergenic
AGCATGCAATCAGTTCTTGC+AGG 0.532832 1.1:+39722061 None:intergenic
CCAAGTGGTGTGAAGAAAAT+GGG 0.533679 1.1:-39722925 MS.gene97685:CDS
ATTTGAATGAGGTTCCGAAA+CGG 0.535448 1.1:-39723992 MS.gene97685:CDS
CAGGAGACTCGACCACAAAC+CGG 0.535543 1.1:-39723484 MS.gene97685:CDS
TGCAAGTAGGATTCACATGA+GGG 0.537596 1.1:-39723391 MS.gene97685:CDS
GATGCCTCAAACTGTCCAGC+TGG 0.539062 1.1:+39722791 None:intergenic
ACCTAGTATTCACCGGTTTG+TGG 0.542498 1.1:+39723472 None:intergenic
TAGCAAAATATGGGCAGAAG+TGG 0.544546 1.1:-39723185 MS.gene97685:CDS
CTATACCATTGCGGCGCCAA+AGG 0.545107 1.1:+39723954 None:intergenic
AAGAAATTAAGCGGCACCGA+TGG 0.545420 1.1:+39722094 None:intergenic
GGACTAGAATCTCTCAGAGC+AGG 0.546735 1.1:-39723653 MS.gene97685:CDS
GTTGGGATATTGAGTGCTCA+GGG 0.547198 1.1:-39723261 MS.gene97685:CDS
AGAAGGGCCACAACTTGGAA+TGG 0.547838 1.1:+39722163 None:intergenic
TATCAATCCGTTGTGGAATG+AGG 0.548822 1.1:-39723628 MS.gene97685:CDS
CTGCCGGTAACATCCTTTGA+AGG 0.549728 1.1:+39724206 None:intergenic
GGCGCCGCAATGGTATAGGT+TGG 0.550817 1.1:-39723949 MS.gene97685:CDS
ATAGTTCCCGAGCTTAACTT+CGG 0.551532 1.1:+39724169 None:intergenic
GTGAAGAACTAGGAGTGGAT+AGG 0.551635 1.1:+39722948 None:intergenic
GCCAAGACACCCTCCTAACA+TGG 0.551812 1.1:-39722449 MS.gene97685:CDS
GGCATAAGGATCACAACTGC+CGG 0.556517 1.1:+39724190 None:intergenic
TGTGTGGTTTGATTTGAATG+AGG 0.557487 1.1:-39724003 MS.gene97685:CDS
TGCCGCTTAATTTCTTCAGG+AGG 0.557905 1.1:-39722087 MS.gene97685:CDS
AAAAGATTCAAGGATTGGTA+AGG 0.560457 1.1:-39723019 MS.gene97685:CDS
CCTAATATTTGCAAGAGCAT+CGG 0.563372 1.1:+39723809 None:intergenic
AGACCAAACCCCATCTTGGA+GGG 0.563491 1.1:-39724322 MS.gene97685:CDS
CCAACACCGAGGCCTGAAGC+CGG 0.564103 1.1:+39724075 None:intergenic
GAGACCAAACCCCATCTTGG+AGG 0.564193 1.1:-39724323 MS.gene97685:CDS
ACGACTTCATTGGTCGTGTG+TGG 0.564266 1.1:-39724019 MS.gene97685:CDS
TTTGATAATTGTCATTTGCA+TGG 0.564967 1.1:-39723063 MS.gene97685:CDS
ATAGTCCTTTGGCGCCGCAA+TGG 0.565983 1.1:-39723959 MS.gene97685:CDS
AAAACATATCATTGTAGAAG+GGG 0.567643 1.1:-39723436 MS.gene97685:CDS
CCTTATGCCGAAGTTAAGCT+CGG 0.570182 1.1:-39724176 MS.gene97685:CDS
GGTGGAATGAGCAATATACT+TGG 0.572552 1.1:-39723125 MS.gene97685:CDS
CAAACTGTCCAGCTGGCTAA+CGG 0.573815 1.1:+39722798 None:intergenic
TTGAGTGGGCTAATTGCTGC+GGG 0.575228 1.1:-39722625 MS.gene97685:CDS
GGATATCTACCCTTATCAGT+TGG 0.576446 1.1:+39723717 None:intergenic
TATAGGTTGGAGGATAGAAA+GGG 0.576864 1.1:-39723936 MS.gene97685:CDS
TTAAACCACCTAGTATTCAC+CGG 0.579069 1.1:+39723465 None:intergenic
CTCCTAGTTCTTCACCCAAG+TGG 0.579462 1.1:-39722940 MS.gene97685:CDS
GCCGCAATGGTATAGGTTGG+AGG 0.582372 1.1:-39723946 MS.gene97685:CDS
TGTGACTCCATTCCAAGTTG+TGG 0.583105 1.1:-39722170 MS.gene97685:CDS
TTAATGCTTGCTGTTTGGAT+GGG 0.584454 1.1:-39723894 MS.gene97685:CDS
AACGTAAATTCCGGTCAGAA+GGG 0.586276 1.1:+39722147 None:intergenic
ACCAAACCCCATCTTGGAGG+GGG 0.588344 1.1:-39724320 MS.gene97685:CDS
TTGCAAGTAGGATTCACATG+AGG 0.591241 1.1:-39723392 MS.gene97685:CDS
GGAAGCTTATGACGGAACCT+CGG 0.592244 1.1:+39722115 None:intergenic
CTCCTGTCCATAAACTGCAA+AGG 0.598615 1.1:+39723501 None:intergenic
CTGGCGTGATCCAAGAGCAA+CGG 0.599242 1.1:-39722236 MS.gene97685:CDS
AAGAGGTAAAGGAAAACTGT+TGG 0.606111 1.1:+39722502 None:intergenic
CCAATTGTAATCACAGTGCA+AGG 0.607117 1.1:+39723090 None:intergenic
ACTACCTCCTTTCTCAGCGG+TGG 0.608379 1.1:+39722727 None:intergenic
ACCCTCCTAACATGGACACT+CGG 0.608381 1.1:-39722441 MS.gene97685:CDS
GTTGGCGACTTAGCTACTCA+AGG 0.610145 1.1:-39722283 MS.gene97685:CDS
GGTAGGATACAGACTGTGGT+TGG 0.612469 1.1:-39722301 MS.gene97685:CDS
GATGCAATACCTTTATGTGA+GGG 0.612976 1.1:-39724249 MS.gene97685:CDS
GGCAGAAGTGGATCCGAACA+AGG 0.613129 1.1:-39723173 MS.gene97685:CDS
GACCAAACCCCATCTTGGAG+GGG 0.614269 1.1:-39724321 MS.gene97685:CDS
CGGCGCCAAAGGACTATCTG+GGG 0.614676 1.1:+39723965 None:intergenic
TTGGCGACTTAGCTACTCAA+GGG 0.614848 1.1:-39722282 MS.gene97685:CDS
CTCATCCGAACAATGTCAGA+AGG 0.615248 1.1:+39722349 None:intergenic
GGAGGTTACTGTGAAAGATA+AGG 0.615500 1.1:-39724054 MS.gene97685:CDS
CTTATGCCGAAGTTAAGCTC+GGG 0.616554 1.1:-39724175 MS.gene97685:CDS
TTGATGTTGGTTCTCACATG+TGG 0.616570 1.1:-39722693 MS.gene97685:CDS
TTCAACAGAAAATCTTCAGG+CGG 0.617196 1.1:+39724347 None:intergenic
AGATGCAATACCTTTATGTG+AGG 0.619566 1.1:-39724250 MS.gene97685:CDS
AGAATCATGGGAGTATTGAG+TGG 0.620422 1.1:-39722640 MS.gene97685:CDS
ACTTAGCTACTCAAGGGGAA+AGG 0.621940 1.1:-39722276 MS.gene97685:CDS
CAGCAGTGATCTTCGCCCAA+CGG 0.622948 1.1:-39723322 MS.gene97685:CDS
GCCGAGTGTCCATGTTAGGA+GGG 0.626241 1.1:+39722440 None:intergenic
GAATCATGGGAGTATTGAGT+GGG 0.626649 1.1:-39722639 MS.gene97685:CDS
GAATTTGGCACTATAGATGG+AGG 0.626699 1.1:-39722471 MS.gene97685:CDS
ATTGAGTGGGCTAATTGCTG+CGG 0.627017 1.1:-39722626 MS.gene97685:CDS
TTTGAGCAGCGAAAATGCAG+AGG 0.627054 1.1:-39724373 None:intergenic
ATGAGGGTTTGTCTAGAAGG+TGG 0.627125 1.1:-39723375 MS.gene97685:CDS
GTGGAATGAGCAATATACTT+GGG 0.627653 1.1:-39723124 MS.gene97685:CDS
GGATTTAATGTTTGTTGCTG+CGG 0.629021 1.1:-39723607 MS.gene97685:CDS
CTTGGGTGAAGAACTAGGAG+TGG 0.630605 1.1:+39722943 None:intergenic
TGAGCCACCGCTGAGAAAGG+AGG 0.630758 1.1:-39722731 MS.gene97685:CDS
GGTATTGCATCTGCTCAACA+AGG 0.633340 1.1:+39724261 None:intergenic
TAGTGCATCTTTGGCAACAG+AGG 0.634644 1.1:+39722835 None:intergenic
GTTCCGTCATAAGCTTCCAT+CGG 0.642868 1.1:-39722110 MS.gene97685:CDS
GCAGGAGTATCAATCCGTTG+TGG 0.643845 1.1:-39723635 MS.gene97685:CDS
TTGATAGCTTTATGCCGAGG+TGG 0.644610 1.1:-39723143 MS.gene97685:CDS
GAATGAGCAATATACTTGGG+AGG 0.645094 1.1:-39723121 MS.gene97685:CDS
GAAAGATAAGGATGTTGTGA+AGG 0.645624 1.1:-39724042 MS.gene97685:CDS
GTGGAGTATGAGAAGAAGCA+AGG 0.650662 1.1:-39722674 MS.gene97685:CDS
ATCGGTTCCACTAACAGTCG+CGG 0.651678 1.1:+39723827 None:intergenic
AGCCTCCTGAAGAAATTAAG+CGG 0.651985 1.1:+39722085 None:intergenic
GTGAAATTCAATTGGCTGTG+AGG 0.654400 1.1:-39722903 MS.gene97685:CDS
GCACCGATGGAAGCTTATGA+CGG 0.656076 1.1:+39722107 None:intergenic
GGAACTATAAAGGAACTACT+CGG 0.658774 1.1:-39724154 MS.gene97685:CDS
ATTAAATCCTCATTCCACAA+CGG 0.659499 1.1:+39723621 None:intergenic
CTACTCAGATAGTTTCAATG+AGG 0.663957 1.1:-39722765 MS.gene97685:CDS
CGAACAAAGAAGAAGTATTG+GGG 0.665700 1.1:-39723536 MS.gene97685:CDS
TCATTGATAGCTTTATGCCG+AGG 0.666881 1.1:-39723146 MS.gene97685:CDS
TCCTCCAACCTATACCATTG+CGG 0.673444 1.1:+39723945 None:intergenic
GGCGCCAAAGGACTATCTGG+GGG 0.676642 1.1:+39723966 None:intergenic
GACTTCGAAGCATAGCTGGT+AGG 0.678712 1.1:-39722318 MS.gene97685:CDS
TCTTCCACACTCAAAATCAG+CGG 0.687134 1.1:+39723570 None:intergenic
TGGCGACTTAGCTACTCAAG+GGG 0.698844 1.1:-39722281 MS.gene97685:CDS
AGCTGGTAGGATACAGACTG+TGG 0.703110 1.1:-39722305 MS.gene97685:CDS
CATGGTCCTGACAAAGCTGG+AGG 0.704809 1.1:-39723045 MS.gene97685:CDS
GTATATTGCTCATTCCACCT+CGG 0.716433 1.1:+39723129 None:intergenic
TCAACTACCTCCTTTCTCAG+CGG 0.739237 1.1:+39722724 None:intergenic
CACAGTAACCTCCAACACCG+AGG 0.741552 1.1:+39724064 None:intergenic
ACAAACCGGTGAATACTAGG+TGG 0.763717 1.1:-39723470 MS.gene97685:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TCATATCTTGTTTATAATAT+TGG - chr1.1:39723868-39723887 MS.gene97685:CDS 15.0%
!! AAAAACATATCATTGTAGAA+GGG - chr1.1:39722979-39722998 MS.gene97685:CDS 20.0%
!! AAGAAATTAAATTTGCAAGT+AGG - chr1.1:39723012-39723031 MS.gene97685:CDS 20.0%
! AAAACATATCATTGTAGAAG+GGG - chr1.1:39722980-39722999 MS.gene97685:CDS 25.0%
! CTTATTGTGTAGCAAAATAT+GGG - chr1.1:39723222-39723241 MS.gene97685:CDS 25.0%
! GAAAAACATATCATTGTAGA+AGG - chr1.1:39722978-39722997 MS.gene97685:CDS 25.0%
! TTTATTTATCTCCTAAGCTT+TGG - chr1.1:39722637-39722656 MS.gene97685:CDS 25.0%
!! TTTGATAATTGTCATTTGCA+TGG - chr1.1:39723353-39723372 MS.gene97685:CDS 25.0%
!!! TTTTTGTGAAGGCTATTTTA+GGG - chr1.1:39722727-39722746 MS.gene97685:CDS 25.0%
ATGAAAAATAAAGATGGGAG+GGG - chr1.1:39723188-39723207 MS.gene97685:CDS 30.0%
ATGCCGATGAAAAATAAAGA+TGG - chr1.1:39723182-39723201 MS.gene97685:CDS 30.0%
ATGTCTCAAAACGTAAATTC+CGG + chr1.1:39724281-39724300 None:intergenic 30.0%
ATTAAATCCTCATTCCACAA+CGG + chr1.1:39722798-39722817 None:intergenic 30.0%
GAAAATGGGTGAAATTCAAT+TGG - chr1.1:39723505-39723524 MS.gene97685:CDS 30.0%
GATGAAAAATAAAGATGGGA+GGG - chr1.1:39723187-39723206 MS.gene97685:CDS 30.0%
GCTAATTTCTTCAGAATCAT+GGG - chr1.1:39723764-39723783 MS.gene97685:CDS 30.0%
GCTTATTGTGTAGCAAAATA+TGG - chr1.1:39723221-39723240 MS.gene97685:CDS 30.0%
GGTTTGATCAAATTTGCAAT+TGG - chr1.1:39723819-39723838 MS.gene97685:CDS 30.0%
TATCAATGATTGTCCTTGTT+CGG + chr1.1:39723259-39723278 None:intergenic 30.0%
TCTTTCAACAGAAAATCTTC+AGG + chr1.1:39722075-39722094 None:intergenic 30.0%
TGAATCAGAACTGTTGTAAT+TGG + chr1.1:39723851-39723870 None:intergenic 30.0%
TGCCGATGAAAAATAAAGAT+GGG - chr1.1:39723183-39723202 MS.gene97685:CDS 30.0%
! AAAAGATTCAAGGATTGGTA+AGG - chr1.1:39723397-39723416 MS.gene97685:CDS 30.0%
!! GTTTTTGTGAAGGCTATTTT+AGG - chr1.1:39722726-39722745 MS.gene97685:CDS 30.0%
!!! CTCCCATCTTTATTTTTCAT+CGG + chr1.1:39723188-39723207 None:intergenic 30.0%
AACTCTTCATCAAGTTCATC+CGG + chr1.1:39724025-39724044 None:intergenic 35.0%
AACTGATAAGGGTAGATATC+CGG - chr1.1:39722701-39722720 MS.gene97685:CDS 35.0%
AAGAGGTAAAGGAAAACTGT+TGG + chr1.1:39723917-39723936 None:intergenic 35.0%
AGAAAGGGTGATAAGGTTAA+GGG - chr1.1:39722495-39722514 MS.gene97685:CDS 35.0%
AGAAGAAAACCAATCCTGAA+TGG - chr1.1:39722292-39722311 MS.gene97685:CDS 35.0%
AGATGCAATACCTTTATGTG+AGG - chr1.1:39722166-39722185 MS.gene97685:CDS 35.0%
ATAGCCTTCACAAAAACTTC+CGG + chr1.1:39722723-39722742 None:intergenic 35.0%
ATTTGAATGAGGTTCCGAAA+CGG - chr1.1:39722424-39722443 MS.gene97685:CDS 35.0%
CCCAATACTTCTTCTTTGTT+CGG + chr1.1:39722882-39722901 None:intergenic 35.0%
CGATGAAAAATAAAGATGGG+AGG - chr1.1:39723186-39723205 MS.gene97685:CDS 35.0%
CTACTCAGATAGTTTCAATG+AGG - chr1.1:39723651-39723670 MS.gene97685:CDS 35.0%
GAAAGATAAGGATGTTGTGA+AGG - chr1.1:39722374-39722393 MS.gene97685:CDS 35.0%
GATGCAATACCTTTATGTGA+GGG - chr1.1:39722167-39722186 MS.gene97685:CDS 35.0%
GGAACTATAAAGGAACTACT+CGG - chr1.1:39722262-39722281 MS.gene97685:CDS 35.0%
GGCTAATTTCTTCAGAATCA+TGG - chr1.1:39723763-39723782 MS.gene97685:CDS 35.0%
GTGGAATGAGCAATATACTT+GGG - chr1.1:39723292-39723311 MS.gene97685:CDS 35.0%
GTTGAGTATATGCTTGATGT+TGG - chr1.1:39723710-39723729 MS.gene97685:CDS 35.0%
TAGAAAGGGTGATAAGGTTA+AGG - chr1.1:39722494-39722513 MS.gene97685:CDS 35.0%
TATAGTGCCAAATTCCAATC+AGG + chr1.1:39723940-39723959 None:intergenic 35.0%
TGAAAAATAAAGATGGGAGG+GGG - chr1.1:39723189-39723208 MS.gene97685:CDS 35.0%
TGCAATTCCTTTGCAGTTTA+TGG - chr1.1:39722908-39722927 MS.gene97685:CDS 35.0%
TTAAACCACCTAGTATTCAC+CGG + chr1.1:39722954-39722973 None:intergenic 35.0%
TTCAACAGAAAATCTTCAGG+CGG + chr1.1:39722072-39722091 None:intergenic 35.0%
TTGGAATTTGGCACTATAGA+TGG - chr1.1:39723942-39723961 MS.gene97685:CDS 35.0%
TTTGAGGGTTAATGTGATTG+AGG - chr1.1:39722662-39722681 MS.gene97685:CDS 35.0%
! ACTGTTGGTAAGATAAGTTC+AGG + chr1.1:39723902-39723921 None:intergenic 35.0%
! AGAAGGTGGTTATCATGTTT+TGG - chr1.1:39723055-39723074 MS.gene97685:CDS 35.0%
! ATATCCGGAAGTTTTTGTGA+AGG - chr1.1:39722716-39722735 MS.gene97685:CDS 35.0%
! ATTCAAGGATTGGTAAGGTA+AGG - chr1.1:39723402-39723421 MS.gene97685:CDS 35.0%
! CCTAATATTTGCAAGAGCAT+CGG + chr1.1:39722610-39722629 None:intergenic 35.0%
! GAATTGGTGTTCTTGAAGTT+GGG - chr1.1:39723138-39723157 MS.gene97685:CDS 35.0%
! GGATTTAATGTTTGTTGCTG+CGG - chr1.1:39722809-39722828 MS.gene97685:CDS 35.0%
! TATAGGTTGGAGGATAGAAA+GGG - chr1.1:39722480-39722499 MS.gene97685:CDS 35.0%
! TCCGAACAAAGAAGAAGTAT+TGG - chr1.1:39722878-39722897 MS.gene97685:CDS 35.0%
! TCCTAAGCTTTGGTATTTGA+GGG - chr1.1:39722647-39722666 MS.gene97685:CDS 35.0%
!! CCGAACAAAGAAGAAGTATT+GGG - chr1.1:39722879-39722898 MS.gene97685:CDS 35.0%
!! CGAACAAAGAAGAAGTATTG+GGG - chr1.1:39722880-39722899 MS.gene97685:CDS 35.0%
!! TGTGTGGTTTGATTTGAATG+AGG - chr1.1:39722413-39722432 MS.gene97685:CDS 35.0%
!! TTAATGCTTGCTGTTTGGAT+GGG - chr1.1:39722522-39722541 MS.gene97685:CDS 35.0%
AAACGTAAATTCCGGTCAGA+AGG + chr1.1:39724273-39724292 None:intergenic 40.0%
AACCAATCCTGAATGGAATC+AGG - chr1.1:39722299-39722318 MS.gene97685:CDS 40.0%
AACCTGATTCCATTCAGGAT+TGG + chr1.1:39722304-39722323 None:intergenic 40.0%
AACGTAAATTCCGGTCAGAA+GGG + chr1.1:39724272-39724291 None:intergenic 40.0%
ACCCTCAAATACCAAAGCTT+AGG + chr1.1:39722651-39722670 None:intergenic 40.0%
ACCTCTTCCTGATTGGAATT+TGG - chr1.1:39723930-39723949 MS.gene97685:CDS 40.0%
AGACTTACAGCCAACTGATA+AGG - chr1.1:39722689-39722708 MS.gene97685:CDS 40.0%
AGCCTCCTGAAGAAATTAAG+CGG + chr1.1:39724334-39724353 None:intergenic 40.0%
ATAGTTCCCGAGCTTAACTT+CGG + chr1.1:39722250-39722269 None:intergenic 40.0%
CCAAGTGGTGTGAAGAAAAT+GGG - chr1.1:39723491-39723510 MS.gene97685:CDS 40.0%
CCAATTGTAATCACAGTGCA+AGG + chr1.1:39723329-39723348 None:intergenic 40.0%
CCGATGCTCTTGCAAATATT+AGG - chr1.1:39722607-39722626 MS.gene97685:CDS 40.0%
CCTTAACAACCCTCACATAA+AGG + chr1.1:39722179-39722198 None:intergenic 40.0%
CCTTGCACTGTGATTACAAT+TGG - chr1.1:39723326-39723345 MS.gene97685:CDS 40.0%
CCTTTATGTGAGGGTTGTTA+AGG - chr1.1:39722176-39722195 MS.gene97685:CDS 40.0%
GAATGAGCAATATACTTGGG+AGG - chr1.1:39723295-39723314 MS.gene97685:CDS 40.0%
GAATTTGGCACTATAGATGG+AGG - chr1.1:39723945-39723964 MS.gene97685:CDS 40.0%
GACTTACAGCCAACTGATAA+GGG - chr1.1:39722690-39722709 MS.gene97685:CDS 40.0%
GCAAAAACCTGATTCCATTC+AGG + chr1.1:39722309-39722328 None:intergenic 40.0%
GGAGGTTACTGTGAAAGATA+AGG - chr1.1:39722362-39722381 MS.gene97685:CDS 40.0%
GGATATCTACCCTTATCAGT+TGG + chr1.1:39722702-39722721 None:intergenic 40.0%
GGGTGTATATAGTGCATCTT+TGG + chr1.1:39723593-39723612 None:intergenic 40.0%
GGTGCAAAAGATTCAAGGAT+TGG - chr1.1:39723392-39723411 MS.gene97685:CDS 40.0%
GGTGGAATGAGCAATATACT+TGG - chr1.1:39723291-39723310 MS.gene97685:CDS 40.0%
GTATATTGCTCATTCCACCT+CGG + chr1.1:39723290-39723309 None:intergenic 40.0%
GTGAAATTCAATTGGCTGTG+AGG - chr1.1:39723513-39723532 MS.gene97685:CDS 40.0%
GTTAAGCTCGGGAACTATAA+AGG - chr1.1:39722252-39722271 MS.gene97685:CDS 40.0%
TAGCAAAATATGGGCAGAAG+TGG - chr1.1:39723231-39723250 MS.gene97685:CDS 40.0%
TATCAATCCGTTGTGGAATG+AGG - chr1.1:39722788-39722807 MS.gene97685:CDS 40.0%
TCTTCCACACTCAAAATCAG+CGG + chr1.1:39722849-39722868 None:intergenic 40.0%
TGCAAGTAGGATTCACATGA+GGG - chr1.1:39723025-39723044 MS.gene97685:CDS 40.0%
TTCCAATCAGGAAGAGGTAA+AGG + chr1.1:39723928-39723947 None:intergenic 40.0%
TTCCTTTACCTCTTCCTGAT+TGG - chr1.1:39723923-39723942 MS.gene97685:CDS 40.0%
TTCCTTTGCAGTTTATGGAC+AGG - chr1.1:39722913-39722932 MS.gene97685:CDS 40.0%
TTGCAAGTAGGATTCACATG+AGG - chr1.1:39723024-39723043 MS.gene97685:CDS 40.0%
TTGCCTTCAAAGGATGTTAC+CGG - chr1.1:39722207-39722226 MS.gene97685:CDS 40.0%
TTTGAATGAGGTTCCGAAAC+GGG - chr1.1:39722425-39722444 MS.gene97685:CDS 40.0%
! ATGAAGCATTTCCAGAAGCT+TGG - chr1.1:39722556-39722575 MS.gene97685:CDS 40.0%
! CCATTTTCTTCACACCACTT+GGG + chr1.1:39723493-39723512 None:intergenic 40.0%
! CTCCTAAGCTTTGGTATTTG+AGG - chr1.1:39722646-39722665 MS.gene97685:CDS 40.0%
! GGAATTGGTGTTCTTGAAGT+TGG - chr1.1:39723137-39723156 MS.gene97685:CDS 40.0%
! GTATAGGTTGGAGGATAGAA+AGG - chr1.1:39722479-39722498 MS.gene97685:CDS 40.0%
! TCAGGTTTTTGCTTTCTCGA+AGG - chr1.1:39722317-39722336 MS.gene97685:CDS 40.0%
! TTTTTGCTTTCTCGAAGGAC+CGG - chr1.1:39722322-39722341 MS.gene97685:CDS 40.0%
!! AGAATCATGGGAGTATTGAG+TGG - chr1.1:39723776-39723795 MS.gene97685:CDS 40.0%
!! GAAGGCTATTTTAGGGAATC+AGG - chr1.1:39722734-39722753 MS.gene97685:CDS 40.0%
!! GAATCATGGGAGTATTGAGT+GGG - chr1.1:39723777-39723796 MS.gene97685:CDS 40.0%
!! GAGAGTTAATGCTTGCTGTT+TGG - chr1.1:39722517-39722536 MS.gene97685:CDS 40.0%
!! GTTAATGCTTGCTGTTTGGA+TGG - chr1.1:39722521-39722540 MS.gene97685:CDS 40.0%
!! TCATTGATAGCTTTATGCCG+AGG - chr1.1:39723270-39723289 MS.gene97685:CDS 40.0%
!! TTGATGTTGGTTCTCACATG+TGG - chr1.1:39723723-39723742 MS.gene97685:CDS 40.0%
!! TTTTAGGGAATCAGGCATTG+AGG - chr1.1:39722742-39722761 MS.gene97685:CDS 40.0%
!!! TTTACGTTTTGAGACATCCG+AGG - chr1.1:39724284-39724303 MS.gene97685:CDS 40.0%
AAAATCAGCGGCTCCTCAAA+TGG + chr1.1:39722837-39722856 None:intergenic 45.0%
AAAGAGACCAAACCCCATCT+TGG - chr1.1:39722090-39722109 MS.gene97685:CDS 45.0%
AACAGAAAATCTTCAGGCGG+TGG + chr1.1:39722069-39722088 None:intergenic 45.0%
ACAAACCGGTGAATACTAGG+TGG - chr1.1:39722946-39722965 MS.gene97685:CDS 45.0%
ACCACAAACCGGTGAATACT+AGG - chr1.1:39722943-39722962 MS.gene97685:CDS 45.0%
ACTTAGCTACTCAAGGGGAA+AGG - chr1.1:39724140-39724159 MS.gene97685:CDS 45.0%
AGCATGCAATCAGTTCTTGC+AGG + chr1.1:39724358-39724377 None:intergenic 45.0%
AGTTGGGATATTGAGTGCTC+AGG - chr1.1:39723154-39723173 MS.gene97685:CDS 45.0%
ATGAGGGTTTGTCTAGAAGG+TGG - chr1.1:39723041-39723060 MS.gene97685:CDS 45.0%
CACATGAGGGTTTGTCTAGA+AGG - chr1.1:39723038-39723057 MS.gene97685:CDS 45.0%
CCCAAGTGGTGTGAAGAAAA+TGG - chr1.1:39723490-39723509 MS.gene97685:CDS 45.0%
CCTTATGCCGAAGTTAAGCT+CGG - chr1.1:39722240-39722259 MS.gene97685:CDS 45.0%
CTCAACAAGGTCATATGTGC+TGG + chr1.1:39722145-39722164 None:intergenic 45.0%
CTCATCCGAACAATGTCAGA+AGG + chr1.1:39724070-39724089 None:intergenic 45.0%
CTCCTGTCCATAAACTGCAA+AGG + chr1.1:39722918-39722937 None:intergenic 45.0%
CTTATGCCGAAGTTAAGCTC+GGG - chr1.1:39722241-39722260 MS.gene97685:CDS 45.0%
GCCAAATTCCAATCAGGAAG+AGG + chr1.1:39723934-39723953 None:intergenic 45.0%
GGAGGATAGAAAGGGTGATA+AGG - chr1.1:39722488-39722507 MS.gene97685:CDS 45.0%
GGCTAAGGATTTGCCTTCAA+AGG - chr1.1:39722197-39722216 MS.gene97685:CDS 45.0%
GGTATTGCATCTGCTCAACA+AGG + chr1.1:39722158-39722177 None:intergenic 45.0%
GTGAAGAACTAGGAGTGGAT+AGG + chr1.1:39723471-39723490 None:intergenic 45.0%
GTGGAGTATGAGAAGAAGCA+AGG - chr1.1:39723742-39723761 MS.gene97685:CDS 45.0%
GTTCCGTCATAAGCTTCCAT+CGG - chr1.1:39724306-39724325 MS.gene97685:CDS 45.0%
GTTGGGATATTGAGTGCTCA+GGG - chr1.1:39723155-39723174 MS.gene97685:CDS 45.0%
GTTGTGAAGGACGACTTCAT+TGG - chr1.1:39722387-39722406 MS.gene97685:CDS 45.0%
TAGTGCATCTTTGGCAACAG+AGG + chr1.1:39723584-39723603 None:intergenic 45.0%
TCAACTACCTCCTTTCTCAG+CGG + chr1.1:39723695-39723714 None:intergenic 45.0%
TCCAGATTTCCAGAGCTGTT+TGG + chr1.1:39723120-39723139 None:intergenic 45.0%
TCCTCCAACCTATACCATTG+CGG + chr1.1:39722474-39722493 None:intergenic 45.0%
TGTGACTCCATTCCAAGTTG+TGG - chr1.1:39724246-39724265 MS.gene97685:CDS 45.0%
TGTGAGGGTTGTTAAGGCTA+AGG - chr1.1:39722182-39722201 MS.gene97685:CDS 45.0%
TTCATCCGGATGAGCTGAAT+CGG + chr1.1:39724011-39724030 None:intergenic 45.0%
TTGACACATTCCCGACTTCA+CGG - chr1.1:39724044-39724063 MS.gene97685:CDS 45.0%
TTGGCGACTTAGCTACTCAA+GGG - chr1.1:39724134-39724153 MS.gene97685:CDS 45.0%
! AAGAAATTAAGCGGCACCGA+TGG + chr1.1:39724325-39724344 None:intergenic 45.0%
! AGATTTTTCCCCCTCCAAGA+TGG + chr1.1:39722107-39722126 None:intergenic 45.0%
! ATTTTTCCCCCTCCAAGATG+GGG + chr1.1:39722105-39722124 None:intergenic 45.0%
! CCCATTTTCTTCACACCACT+TGG + chr1.1:39723494-39723513 None:intergenic 45.0%
! CTGGAGGTGCAAAAGATTCA+AGG - chr1.1:39723387-39723406 MS.gene97685:CDS 45.0%
! GATTTTTCCCCCTCCAAGAT+GGG + chr1.1:39722106-39722125 None:intergenic 45.0%
! TGCCGCTTAATTTCTTCAGG+AGG - chr1.1:39724329-39724348 MS.gene97685:CDS 45.0%
!! ACCTAGTATTCACCGGTTTG+TGG + chr1.1:39722947-39722966 None:intergenic 45.0%
!! ATTGAGTGGGCTAATTGCTG+CGG - chr1.1:39723790-39723809 MS.gene97685:CDS 45.0%
!! CAGCTCTGGAAATCTGGAAT+TGG - chr1.1:39723122-39723141 MS.gene97685:CDS 45.0%
!! TTGATAGCTTTATGCCGAGG+TGG - chr1.1:39723273-39723292 MS.gene97685:CDS 45.0%
ACCCTCCTAACATGGACACT+CGG - chr1.1:39723975-39723994 MS.gene97685:CDS 50.0%
ACGACTTCATTGGTCGTGTG+TGG - chr1.1:39722397-39722416 MS.gene97685:CDS 50.0%
AGAAGGGCCACAACTTGGAA+TGG + chr1.1:39724256-39724275 None:intergenic 50.0%
AGACCAAACCCCATCTTGGA+GGG - chr1.1:39722094-39722113 MS.gene97685:CDS 50.0%
AGCTGGTAGGATACAGACTG+TGG - chr1.1:39724111-39724130 MS.gene97685:CDS 50.0%
ATGTCAGAAGGCCGTGAAGT+CGG + chr1.1:39724058-39724077 None:intergenic 50.0%
CAAACTGTCCAGCTGGCTAA+CGG + chr1.1:39723621-39723640 None:intergenic 50.0%
CACCACTTGGGTGAAGAACT+AGG + chr1.1:39723481-39723500 None:intergenic 50.0%
CACGGCCTTCTGACATTGTT+CGG - chr1.1:39724062-39724081 MS.gene97685:CDS 50.0%
CCGAGCTTAACTTCGGCATA+AGG + chr1.1:39722243-39722262 None:intergenic 50.0%
CTGCCGGTAACATCCTTTGA+AGG + chr1.1:39722213-39722232 None:intergenic 50.0%
CTTGGAGGGGGAAAAATCTC+TGG - chr1.1:39722108-39722127 MS.gene97685:CDS 50.0%
CTTGGGTGAAGAACTAGGAG+TGG + chr1.1:39723476-39723495 None:intergenic 50.0%
GACTTCGAAGCATAGCTGGT+AGG - chr1.1:39724098-39724117 MS.gene97685:CDS 50.0%
GGACTAGAATCTCTCAGAGC+AGG - chr1.1:39722763-39722782 MS.gene97685:CDS 50.0%
GGCATAAGGATCACAACTGC+CGG + chr1.1:39722229-39722248 None:intergenic 50.0%
GGCTAATTGCTGCGGGAAAA+TGG - chr1.1:39723798-39723817 MS.gene97685:CDS 50.0%
GGTAGGATACAGACTGTGGT+TGG - chr1.1:39724115-39724134 MS.gene97685:CDS 50.0%
GTTGGCGACTTAGCTACTCA+AGG - chr1.1:39724133-39724152 MS.gene97685:CDS 50.0%
TGGCGACTTAGCTACTCAAG+GGG - chr1.1:39724135-39724154 MS.gene97685:CDS 50.0%
TGTTGCTGCGGAACCATTTG+AGG - chr1.1:39722821-39722840 MS.gene97685:CDS 50.0%
TTAGCCAGCTGGACAGTTTG+AGG - chr1.1:39723621-39723640 MS.gene97685:CDS 50.0%
TTGCATGGTCCTGACAAAGC+TGG - chr1.1:39723368-39723387 MS.gene97685:CDS 50.0%
! ACAAACAGTGCCGTTGCTCT+TGG + chr1.1:39724193-39724212 None:intergenic 50.0%
! ATCGGTTCCACTAACAGTCG+CGG + chr1.1:39722592-39722611 None:intergenic 50.0%
! CTCCTAGTTCTTCACCCAAG+TGG - chr1.1:39723476-39723495 MS.gene97685:CDS 50.0%
! GATCGACTTCGAAGCATAGC+TGG - chr1.1:39724094-39724113 MS.gene97685:CDS 50.0%
! GCACCGATGGAAGCTTATGA+CGG + chr1.1:39724312-39724331 None:intergenic 50.0%
! GGAAGCTTATGACGGAACCT+CGG + chr1.1:39724304-39724323 None:intergenic 50.0%
! TGCTGTTTGGATGGGTACAC+AGG - chr1.1:39722530-39722549 MS.gene97685:CDS 50.0%
! TTTGCACCTCCAGCTTTGTC+AGG + chr1.1:39723380-39723399 None:intergenic 50.0%
!! CGGTGCCGCTTAATTTCTTC+AGG - chr1.1:39724326-39724345 MS.gene97685:CDS 50.0%
!! GCAGGAGTATCAATCCGTTG+TGG - chr1.1:39722781-39722800 MS.gene97685:CDS 50.0%
!! GCCAAACAGCTCTGGAAATC+TGG - chr1.1:39723116-39723135 MS.gene97685:CDS 50.0%
!! TCCATGTTAGGAGGGTGTCT+TGG + chr1.1:39723971-39723990 None:intergenic 50.0%
!! TTGAGTGGGCTAATTGCTGC+GGG - chr1.1:39723791-39723810 MS.gene97685:CDS 50.0%
ACCAAACCCCATCTTGGAGG+GGG - chr1.1:39722096-39722115 MS.gene97685:CDS 55.0%
ACTACCTCCTTTCTCAGCGG+TGG + chr1.1:39723692-39723711 None:intergenic 55.0%
AGCCGAGTGTCCATGTTAGG+AGG + chr1.1:39723980-39723999 None:intergenic 55.0%
ATAGTCCTTTGGCGCCGCAA+TGG - chr1.1:39722457-39722476 MS.gene97685:CDS 55.0%
CAAGTTGTGGCCCTTCTGAC+CGG - chr1.1:39724259-39724278 MS.gene97685:CDS 55.0%
CACAGTAACCTCCAACACCG+AGG + chr1.1:39722355-39722374 None:intergenic 55.0%
CAGCAGTGATCTTCGCCCAA+CGG - chr1.1:39723094-39723113 MS.gene97685:CDS 55.0%
CAGGAGACTCGACCACAAAC+CGG - chr1.1:39722932-39722951 MS.gene97685:CDS 55.0%
CATGGTCCTGACAAAGCTGG+AGG - chr1.1:39723371-39723390 MS.gene97685:CDS 55.0%
CTATACCATTGCGGCGCCAA+AGG + chr1.1:39722465-39722484 None:intergenic 55.0%
CTATCTGGGGGAACCCGTTT+CGG + chr1.1:39722441-39722460 None:intergenic 55.0%
CTGGCGTGATCCAAGAGCAA+CGG - chr1.1:39724180-39724199 MS.gene97685:CDS 55.0%
CTTTGGCGCCGCAATGGTAT+AGG - chr1.1:39722463-39722482 MS.gene97685:CDS 55.0%
GACCAAACCCCATCTTGGAG+GGG - chr1.1:39722095-39722114 MS.gene97685:CDS 55.0%
GAGACCAAACCCCATCTTGG+AGG - chr1.1:39722093-39722112 MS.gene97685:CDS 55.0%
GAGAGCCGAGTGTCCATGTT+AGG + chr1.1:39723983-39724002 None:intergenic 55.0%
GATGCCTCAAACTGTCCAGC+TGG + chr1.1:39723628-39723647 None:intergenic 55.0%
GCATCTGAGTGCCAAGCTTC+TGG + chr1.1:39722570-39722589 None:intergenic 55.0%
GCCAAGACACCCTCCTAACA+TGG - chr1.1:39723967-39723986 MS.gene97685:CDS 55.0%
GCCGAGTGTCCATGTTAGGA+GGG + chr1.1:39723979-39723998 None:intergenic 55.0%
GGCAGAAGTGGATCCGAACA+AGG - chr1.1:39723243-39723262 MS.gene97685:CDS 55.0%
GGCTGCAGTCTTTACTGAGC+TGG - chr1.1:39724161-39724180 MS.gene97685:CDS 55.0%
GGTTCCCCCAGATAGTCCTT+TGG - chr1.1:39722446-39722465 MS.gene97685:CDS 55.0%
TCAGATGCCGCGACTGTTAG+TGG - chr1.1:39722582-39722601 MS.gene97685:CDS 55.0%
TCCAGAGCTGTTTGGCCGTT+GGG + chr1.1:39723112-39723131 None:intergenic 55.0%
TCCAGCTGGCTAACGGTCAA+CGG + chr1.1:39723614-39723633 None:intergenic 55.0%
TGTCAGAAGGCCGTGAAGTC+GGG + chr1.1:39724057-39724076 None:intergenic 55.0%
TTCCAGAGCTGTTTGGCCGT+TGG + chr1.1:39723113-39723132 None:intergenic 55.0%
! GCCGCAATGGTATAGGTTGG+AGG - chr1.1:39722470-39722489 MS.gene97685:CDS 55.0%
! TTTCTCGAAGGACCGGCTTC+AGG - chr1.1:39722329-39722348 MS.gene97685:CDS 55.0%
!! TCACGCCGATTCAGCTCATC+CGG - chr1.1:39724003-39724022 MS.gene97685:CDS 55.0%
!!! GGAGCCGCTGATTTTGAGTG+TGG - chr1.1:39722842-39722861 MS.gene97685:CDS 55.0%
CCAGCTGGCTAACGGTCAAC+GGG + chr1.1:39723613-39723632 None:intergenic 60.0%
CGGCGCCAAAGGACTATCTG+GGG + chr1.1:39722454-39722473 None:intergenic 60.0%
CGGTCAGAAGGGCCACAACT+TGG + chr1.1:39724261-39724280 None:intergenic 60.0%
GCGGCGCCAAAGGACTATCT+GGG + chr1.1:39722455-39722474 None:intergenic 60.0%
GGCGCCAAAGGACTATCTGG+GGG + chr1.1:39722453-39722472 None:intergenic 60.0%
GGCGCCGCAATGGTATAGGT+TGG - chr1.1:39722467-39722486 MS.gene97685:CDS 60.0%
TCCCCCTCCAAGATGGGGTT+TGG + chr1.1:39722100-39722119 None:intergenic 60.0%
TGAGCCACCGCTGAGAAAGG+AGG - chr1.1:39723685-39723704 MS.gene97685:CDS 60.0%
TGCGGCGCCAAAGGACTATC+TGG + chr1.1:39722456-39722475 None:intergenic 60.0%
CCAACACCGAGGCCTGAAGC+CGG + chr1.1:39722344-39722363 None:intergenic 65.0%
CCCGTTGACCGTTAGCCAGC+TGG - chr1.1:39723610-39723629 MS.gene97685:CDS 65.0%
CGCTGAGCCACCGCTGAGAA+AGG - chr1.1:39723682-39723701 MS.gene97685:CDS 65.0%
GCCCAACGGCCAAACAGCTC+TGG - chr1.1:39723108-39723127 MS.gene97685:CDS 65.0%
! GAAGGACCGGCTTCAGGCCT+CGG - chr1.1:39722335-39722354 MS.gene97685:CDS 65.0%
!! GCTTCAGGCCTCGGTGTTGG+AGG - chr1.1:39722344-39722363 MS.gene97685:CDS 65.0%
! CCGGCTTCAGGCCTCGGTGT+TGG - chr1.1:39722341-39722360 MS.gene97685:CDS 70.0%


Chromosome Type Strat End Strand Name
chr1.1 gene 39722057 39724381 39722057 ID=MS.gene97685
chr1.1 mRNA 39722057 39724381 39722057 ID=MS.gene97685.t1;Parent=MS.gene97685
chr1.1 exon 39722057 39724381 39722057 ID=MS.gene97685.t1.exon1;Parent=MS.gene97685.t1
chr1.1 CDS 39722057 39724381 39722057 ID=cds.MS.gene97685.t1;Parent=MS.gene97685.t1
Gene Sequence

>MS.gene97685

ATGCAGAGGCCACCGCCTGAAGATTTTCTGTTGAAAGAGACCAAACCCCATCTTGGAGGGGGAAAAATCTCTGGTGACAAACTAACCAGCACATATGACCTTGTTGAGCAGATGCAATACCTTTATGTGAGGGTTGTTAAGGCTAAGGATTTGCCTTCAAAGGATGTTACCGGCAGTTGTGATCCTTATGCCGAAGTTAAGCTCGGGAACTATAAAGGAACTACTCGGCATTTCGAGAAGAAAACCAATCCTGAATGGAATCAGGTTTTTGCTTTCTCGAAGGACCGGCTTCAGGCCTCGGTGTTGGAGGTTACTGTGAAAGATAAGGATGTTGTGAAGGACGACTTCATTGGTCGTGTGTGGTTTGATTTGAATGAGGTTCCGAAACGGGTTCCCCCAGATAGTCCTTTGGCGCCGCAATGGTATAGGTTGGAGGATAGAAAGGGTGATAAGGTTAAGGGAGAGTTAATGCTTGCTGTTTGGATGGGTACACAGGCTGATGAAGCATTTCCAGAAGCTTGGCACTCAGATGCCGCGACTGTTAGTGGAACCGATGCTCTTGCAAATATTAGGTCGAAAGTTTATTTATCTCCTAAGCTTTGGTATTTGAGGGTTAATGTGATTGAGGCACAAGACTTACAGCCAACTGATAAGGGTAGATATCCGGAAGTTTTTGTGAAGGCTATTTTAGGGAATCAGGCATTGAGGACTAGAATCTCTCAGAGCAGGAGTATCAATCCGTTGTGGAATGAGGATTTAATGTTTGTTGCTGCGGAACCATTTGAGGAGCCGCTGATTTTGAGTGTGGAAGACAGAGTTGCTCCGAACAAAGAAGAAGTATTGGGGAGATGTGCAATTCCTTTGCAGTTTATGGACAGGAGACTCGACCACAAACCGGTGAATACTAGGTGGTTTAATCTTGAAAAACATATCATTGTAGAAGGGGAAAAGAAGAAAGAAATTAAATTTGCAAGTAGGATTCACATGAGGGTTTGTCTAGAAGGTGGTTATCATGTTTTGGATGAATCAACTCACTACAGCAGTGATCTTCGCCCAACGGCCAAACAGCTCTGGAAATCTGGAATTGGTGTTCTTGAAGTTGGGATATTGAGTGCTCAGGGCTTGATGCCGATGAAAAATAAAGATGGGAGGGGGACAACTGATGCTTATTGTGTAGCAAAATATGGGCAGAAGTGGATCCGAACAAGGACAATCATTGATAGCTTTATGCCGAGGTGGAATGAGCAATATACTTGGGAGGTTTTTGATCCTTGCACTGTGATTACAATTGGTGTATTTGATAATTGTCATTTGCATGGTCCTGACAAAGCTGGAGGTGCAAAAGATTCAAGGATTGGTAAGGTAAGGATTCGACTTTCGACACTCGAGACTGATCGAGTGTACACACATTCCTATCCACTCCTAGTTCTTCACCCAAGTGGTGTGAAGAAAATGGGTGAAATTCAATTGGCTGTGAGGTTCACTTGTTCTTCTTTGCTCAACATGATGCACATGTATTCACTACCTCTGTTGCCAAAGATGCACTATATACACCCGTTGACCGTTAGCCAGCTGGACAGTTTGAGGCATCAAGCTACTCAGATAGTTTCAATGAGGCTGAGTCGCGCTGAGCCACCGCTGAGAAAGGAGGTAGTTGAGTATATGCTTGATGTTGGTTCTCACATGTGGAGTATGAGAAGAAGCAAGGCTAATTTCTTCAGAATCATGGGAGTATTGAGTGGGCTAATTGCTGCGGGAAAATGGTTTGATCAAATTTGCAATTGGAAAAATCCAATTACAACAGTTCTGATTCATATCTTGTTTATAATATTGGTCATGTATCCTGAACTTATCTTACCAACAGTTTTCCTTTACCTCTTCCTGATTGGAATTTGGCACTATAGATGGAGGCCAAGACACCCTCCTAACATGGACACTCGGCTCTCTCACGCCGATTCAGCTCATCCGGATGAACTTGATGAAGAGTTTGACACATTCCCGACTTCACGGCCTTCTGACATTGTTCGGATGAGATATGATCGACTTCGAAGCATAGCTGGTAGGATACAGACTGTGGTTGGCGACTTAGCTACTCAAGGGGAAAGGCTGCAGTCTTTACTGAGCTGGCGTGATCCAAGAGCAACGGCACTGTTTGTGATTTTCTGTCTGATTGCTGCTACTATACTGTATGTGACTCCATTCCAAGTTGTGGCCCTTCTGACCGGAATTTACGTTTTGAGACATCCGAGGTTCCGTCATAAGCTTCCATCGGTGCCGCTTAATTTCTTCAGGAGGCTGCCTGCAAGAACTGATTGCATGCTTTGA
Protein sequence

>MS.gene97685.t1

MQRPPPEDFLLKETKPHLGGGKISGDKLTSTYDLVEQMQYLYVRVVKAKDLPSKDVTGSCDPYAEVKLGNYKGTTRHFEKKTNPEWNQVFAFSKDRLQASVLEVTVKDKDVVKDDFIGRVWFDLNEVPKRVPPDSPLAPQWYRLEDRKGDKVKGELMLAVWMGTQADEAFPEAWHSDAATVSGTDALANIRSKVYLSPKLWYLRVNVIEAQDLQPTDKGRYPEVFVKAILGNQALRTRISQSRSINPLWNEDLMFVAAEPFEEPLILSVEDRVAPNKEEVLGRCAIPLQFMDRRLDHKPVNTRWFNLEKHIIVEGEKKKEIKFASRIHMRVCLEGGYHVLDESTHYSSDLRPTAKQLWKSGIGVLEVGILSAQGLMPMKNKDGRGTTDAYCVAKYGQKWIRTRTIIDSFMPRWNEQYTWEVFDPCTVITIGVFDNCHLHGPDKAGGAKDSRIGKVRIRLSTLETDRVYTHSYPLLVLHPSGVKKMGEIQLAVRFTCSSLLNMMHMYSLPLLPKMHYIHPLTVSQLDSLRHQATQIVSMRLSRAEPPLRKEVVEYMLDVGSHMWSMRRSKANFFRIMGVLSGLIAAGKWFDQICNWKNPITTVLIHILFIILVMYPELILPTVFLYLFLIGIWHYRWRPRHPPNMDTRLSHADSAHPDELDEEFDTFPTSRPSDIVRMRYDRLRSIAGRIQTVVGDLATQGERLQSLLSWRDPRATALFVIFCLIAATILYVTPFQVVALLTGIYVLRHPRFRHKLPSVPLNFFRRLPARTDCML