AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene072777


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene072777.t1 MTR_5g010150 99.303 287 2 0 1 287 1 287 0.0 580
MS.gene072777.t1 MTR_8g098375 93.706 286 18 0 1 286 1 286 0.0 553
MS.gene072777.t1 MTR_4g415300 84.722 288 40 2 2 286 3 289 3.84e-180 498
MS.gene072777.t1 MTR_5g082070 84.965 286 41 1 3 286 4 289 6.87e-180 497
MS.gene072777.t1 MTR_3g070210 84.669 287 42 1 3 287 4 290 3.10e-179 495
MS.gene072777.t1 MTR_3g070210 84.170 259 39 1 3 259 4 262 4.24e-158 441
MS.gene072777.t1 MTR_5g010150 99.524 210 1 0 1 210 1 210 3.44e-153 427
MS.gene072777.t1 MTR_8g098375 86.900 229 28 1 1 227 1 229 9.64e-146 409
MS.gene072777.t1 MTR_7g101190 74.525 263 60 2 29 285 16 277 1.12e-140 398
MS.gene072777.t1 MTR_2g094270 68.889 270 76 2 23 285 11 279 7.66e-136 385
MS.gene072777.t1 MTR_4g059390 68.914 267 76 2 25 285 12 277 1.43e-131 375
MS.gene072777.t1 MTR_3g118010 69.057 265 81 1 21 285 6 269 2.90e-131 374
MS.gene072777.t1 MTR_3g070210 82.857 210 34 1 3 210 4 213 3.34e-124 353
MS.gene072777.t1 MTR_4g415300 81.604 212 35 2 2 210 3 213 4.00e-123 351
MS.gene072777.t1 MTR_2g094270 69.295 241 66 2 23 256 11 250 9.32e-120 344
MS.gene072777.t1 MTR_1g095070 76.316 190 44 1 96 285 23 211 1.56e-103 301
MS.gene072777.t1 MTR_1g095070 77.019 161 36 1 96 256 23 182 5.07e-87 258
MS.gene072777.t1 MTR_4g059390 66.667 192 57 2 25 210 12 202 1.68e-85 254
MS.gene072777.t1 MTR_1g077540 35.776 232 130 6 52 278 21 238 1.06e-32 121
MS.gene072777.t1 MTR_6g069040 39.834 241 127 8 52 287 21 248 1.24e-32 120
MS.gene072777.t1 MTR_2g101370 35.897 234 135 5 47 277 15 236 2.67e-32 120
MS.gene072777.t1 MTR_8g013680 36.752 234 131 6 46 274 11 232 6.12e-32 119
MS.gene072777.t1 MTR_1g115405 34.836 244 139 7 41 278 10 239 5.75e-29 111
MS.gene072777.t1 MTR_7g103030 33.745 243 137 7 42 277 11 236 4.79e-28 108
MS.gene072777.t1 MTR_7g023350 34.426 244 140 7 41 278 10 239 5.44e-28 108
MS.gene072777.t1 MTR_4g063090 32.773 238 145 5 41 275 10 235 1.27e-27 107
MS.gene072777.t1 MTR_1g006490 34.199 231 125 7 52 275 19 229 1.57e-27 107
MS.gene072777.t1 MTR_5g012810 37.168 226 126 6 52 274 19 231 1.45e-26 104
MS.gene072777.t1 MTR_1g006590 33.906 233 123 8 52 275 19 229 3.32e-26 103
MS.gene072777.t1 MTR_2g060360 32.365 241 125 9 52 278 19 235 2.29e-20 88.2
MS.gene072777.t1 MTR_5g079570 29.688 192 122 4 84 275 68 246 3.61e-19 85.1
MS.gene072777.t1 MTR_8g087710 29.289 239 145 7 43 277 30 248 8.16e-19 84.3
MS.gene072777.t1 MTR_2g017590 32.203 236 137 7 55 287 39 254 9.03e-19 84.3
MS.gene072777.t1 MTR_5g063930 27.632 228 150 5 47 274 32 244 1.24e-18 83.6
MS.gene072777.t1 MTR_4g084880 25.664 226 148 5 55 277 38 246 1.87e-18 83.2
MS.gene072777.t1 MTR_2g017660 28.634 227 146 6 41 267 28 238 5.40e-18 82.0
MS.gene072777.t1 MTR_3g008920 31.250 192 119 4 84 275 54 232 6.01e-18 81.6
MS.gene072777.t1 MTR_2g017620 30.705 241 144 7 50 287 22 242 1.11e-17 80.9
MS.gene072777.t1 MTR_2g017620 30.705 241 144 7 50 287 36 256 1.35e-17 80.9
MS.gene072777.t1 MTR_4g075570 28.205 195 118 7 99 279 95 281 4.18e-17 80.5
MS.gene072777.t1 MTR_4g075590 26.316 247 163 7 44 279 29 267 5.29e-17 80.1
MS.gene072777.t1 MTR_8g087720 27.197 239 157 6 49 287 35 256 6.92e-17 79.0
MS.gene072777.t1 MTR_2g017610 30.043 233 146 6 55 287 41 256 6.96e-17 79.0
MS.gene072777.t1 MTR_2g017570 29.614 233 147 6 55 287 41 256 1.58e-16 78.2
MS.gene072777.t1 MTR_4g006730 28.302 212 135 6 56 267 79 273 6.82e-16 76.6
MS.gene072777.t1 MTR_7g010650 27.966 236 150 7 50 284 35 251 6.92e-16 76.3
MS.gene072777.t1 MTR_2g104940 30.516 213 129 7 56 267 84 278 2.09e-15 75.5
MS.gene072777.t1 MTR_4g006630 29.609 179 112 4 89 267 22 186 5.42e-14 70.1
MS.gene072777.t1 MTR_4g006730 29.609 179 112 4 89 267 22 186 5.69e-14 69.7
MS.gene072777.t1 MTR_2g017620 31.053 190 111 5 101 287 3 175 1.13e-13 68.6
MS.gene072777.t1 MTR_1g097840 28.319 226 142 8 56 279 78 285 7.92e-13 67.8
MS.gene072777.t1 MTR_1g070385 26.872 227 143 7 49 272 59 265 6.13e-12 66.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene072777.t1 AT4G00430 86.667 285 37 1 3 287 4 287 0.0 507
MS.gene072777.t1 AT2G45960 85.965 285 38 2 3 287 4 286 0.0 499
MS.gene072777.t1 AT4G23400 87.324 284 35 1 3 286 4 286 1.12e-175 486
MS.gene072777.t1 AT1G01620 87.018 285 35 2 3 287 4 286 1.97e-174 483
MS.gene072777.t1 AT3G61430 85.614 285 39 2 3 287 4 286 3.67e-172 477
MS.gene072777.t1 AT3G61430 85.614 285 39 2 3 287 4 286 3.67e-172 477
MS.gene072777.t1 AT2G45960 85.827 254 34 2 3 256 4 255 1.46e-159 445
MS.gene072777.t1 AT2G45960 85.827 254 34 2 3 256 4 255 4.39e-158 442
MS.gene072777.t1 AT1G01620 89.302 215 22 1 73 287 1 214 1.44e-138 389
MS.gene072777.t1 AT2G37170 72.692 260 64 3 27 280 55 313 4.41e-135 385
MS.gene072777.t1 AT2G37170 72.692 260 64 3 27 280 12 270 1.12e-134 382
MS.gene072777.t1 AT4G35100 71.483 263 74 1 23 285 9 270 1.73e-134 382
MS.gene072777.t1 AT4G35100 71.483 263 74 1 23 285 9 270 1.73e-134 382
MS.gene072777.t1 AT3G53420 72.692 260 64 2 27 280 14 272 2.09e-134 382
MS.gene072777.t1 AT3G53420 72.692 260 64 2 27 280 14 272 2.09e-134 382
MS.gene072777.t1 AT3G54820 68.000 275 81 2 17 285 3 276 3.42e-134 381
MS.gene072777.t1 AT2G39010 68.364 275 80 2 17 285 3 276 2.72e-133 379
MS.gene072777.t1 AT2G16850 72.374 257 70 1 29 285 13 268 5.59e-133 378
MS.gene072777.t1 AT2G37180 71.538 260 67 3 27 280 12 270 1.11e-132 377
MS.gene072777.t1 AT5G60660 70.455 264 71 2 28 285 15 277 2.11e-132 377
MS.gene072777.t1 AT4G00430 83.019 212 35 1 3 214 4 214 2.85e-126 358
MS.gene072777.t1 AT2G39010 64.500 200 64 2 17 210 3 201 7.96e-85 254
MS.gene072777.t1 AT5G47450 37.872 235 131 6 43 274 10 232 4.66e-31 116
MS.gene072777.t1 AT1G73190 36.066 244 127 8 52 282 24 251 5.34e-31 117
MS.gene072777.t1 AT4G01470 34.711 242 139 6 41 277 10 237 1.22e-30 115
MS.gene072777.t1 AT3G16240 36.364 231 132 5 47 274 14 232 1.63e-30 115
MS.gene072777.t1 AT1G17810 36.170 235 130 5 52 278 24 246 5.23e-30 114
MS.gene072777.t1 AT2G36830 34.286 245 134 9 41 276 10 236 5.52e-28 108
MS.gene072777.t1 AT3G26520 33.188 229 138 5 52 277 22 238 1.29e-27 107
MS.gene072777.t1 AT4G17340 36.596 235 134 6 43 274 10 232 5.03e-27 106
MS.gene072777.t1 AT3G47440 32.759 232 136 6 52 278 23 239 4.33e-25 101
MS.gene072777.t1 AT2G25810 34.335 233 136 8 52 282 19 236 9.15e-25 100
MS.gene072777.t1 AT4G19030 29.643 280 171 9 3 277 13 271 1.41e-19 87.0
MS.gene072777.t1 AT1G31885 32.000 225 140 7 45 267 36 249 5.51e-19 85.5
MS.gene072777.t1 AT4G18910 28.512 242 162 6 38 277 36 268 6.64e-17 79.3
MS.gene072777.t1 AT5G37820 28.111 217 130 7 55 266 46 241 8.97e-17 79.0
MS.gene072777.t1 AT5G37820 28.111 217 130 7 55 266 82 277 1.40e-16 79.0
MS.gene072777.t1 AT2G34390 26.119 268 168 9 16 277 20 263 6.01e-16 76.6
MS.gene072777.t1 AT1G31885 31.892 185 116 5 85 267 19 195 9.14e-16 75.9
MS.gene072777.t1 AT2G34390 27.511 229 144 8 55 277 9 221 4.19e-14 70.9
MS.gene072777.t1 AT3G06100 29.707 239 140 8 52 286 46 260 1.25e-13 69.7
MS.gene072777.t1 AT3G06100 29.661 236 138 8 55 286 1 212 3.27e-13 68.2
MS.gene072777.t1 AT4G10380 26.316 266 160 9 20 267 29 276 5.73e-13 68.2
MS.gene072777.t1 AT1G80760 29.004 231 143 8 49 277 77 288 9.48e-13 67.8
MS.gene072777.t1 AT5G37810 23.789 227 149 6 55 277 46 252 2.04e-12 66.6

Find 71 sgRNAs with CRISPR-Local

Find 139 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CAAGGAATTGCTTGGGCTTT+TGG 0.161774 5.3:-3886662 MS.gene072777:CDS
TATTGCACTGCTGGAATTTC+AGG 0.165208 5.3:-3886617 MS.gene072777:intron
TTGGCTACAATTCCCATTAC+TGG 0.294571 5.3:-3885438 MS.gene072777:CDS
TTCTGGGTTGGACCTTTCAT+TGG 0.308099 5.3:-3885235 MS.gene072777:CDS
GCCCTTGTCTATTGCACTGC+TGG 0.332113 5.3:-3886626 MS.gene072777:CDS
ACCAACAGAGGCACACTTAG+AGG 0.335616 5.3:+3886688 None:intergenic
GGAGAGGGAGGAAGATGTTA+AGG 0.389962 5.3:-3886921 MS.gene072777:CDS
GATCCGAGCAATTCCTTTCA+AGG 0.393867 5.3:-3885179 MS.gene072777:CDS
TTGGTATTCAAGGAATTGCT+TGG 0.400234 5.3:-3886670 MS.gene072777:CDS
GCTCGTTATGAGTTGTATAA+AGG 0.401946 5.3:-3885781 MS.gene072777:CDS
TGTGCCTCTGTTGGTATTCA+AGG 0.404573 5.3:-3886680 MS.gene072777:CDS
ACAATTCCCATTACTGGAAC+TGG 0.407279 5.3:-3885432 MS.gene072777:CDS
GAATTGCTCGGATCACTATC+TGG 0.408932 5.3:+3885188 None:intergenic
ATGGTCTCTGTTGTATATTA+TGG 0.412666 5.3:+3885380 None:intergenic
AGAGTCTCTTGCATTTCTCT+TGG 0.418783 5.3:+3885654 None:intergenic
AGGGAGGAAGATGTTAAGGT+TGG 0.422571 5.3:-3886917 MS.gene072777:CDS
TGCAAGAGACTCTCACGTTC+CGG 0.436085 5.3:-3885644 MS.gene072777:intron
TGGTATTCAAGGAATTGCTT+GGG 0.437803 5.3:-3886669 MS.gene072777:CDS
TACACCAAGGGTGATGGTCT+TGG 0.441240 5.3:-3885733 MS.gene072777:CDS
CTTGGAGCTATCTGTGGTGC+TGG 0.453990 5.3:-3885829 MS.gene072777:CDS
TTCTCAGAAAAGAATGCATT+GGG 0.454430 5.3:-3886884 MS.gene072777:CDS
AATTACTCCCTTGCCTTGAA+AGG 0.455988 5.3:+3885166 None:intergenic
CCAGCACCTTTGTTTGAGCC+AGG 0.466057 5.3:-3886818 MS.gene072777:CDS
CCCTCTAAGTGTGCCTCTGT+TGG 0.469372 5.3:-3886689 MS.gene072777:CDS
TTAATGCCAGTTCCAGTAAT+GGG 0.469401 5.3:+3885426 None:intergenic
ATAAATCCAGCGGTGACATT+CGG 0.475431 5.3:-3885913 MS.gene072777:CDS
TACATAATAATGCAGTGTCT+TGG 0.479630 5.3:-3885847 MS.gene072777:CDS
GACCATGACTTCAACTCTCC+TGG 0.486464 5.3:+3886800 None:intergenic
AACTCTCCTGGCTCAAACAA+AGG 0.498554 5.3:+3886812 None:intergenic
CATCACTGTCTTAACTGTGA+TGG 0.500492 5.3:-3886726 MS.gene072777:CDS
GTTCTCAGAAAAGAATGCAT+TGG 0.502108 5.3:-3886885 MS.gene072777:CDS
GGTCTTGGAGCTGAGATTGT+TGG 0.502760 5.3:-3885718 MS.gene072777:CDS
CCTGGCTCAAACAAAGGTGC+TGG 0.505994 5.3:+3886818 None:intergenic
TGCATTTCTCTTGGCATCAG+TGG 0.515764 5.3:+3885663 None:intergenic
TAACTGTGATGGGTGTGAAT+AGG 0.515829 5.3:-3886715 MS.gene072777:CDS
GAAAAGAATGCATTGGGCAC+AGG 0.516964 5.3:-3886878 MS.gene072777:CDS
ATTAACCCAGCTAGGAGTCT+TGG 0.521008 5.3:-3885408 MS.gene072777:CDS
TATACAACAGAGACCATGCT+TGG 0.521813 5.3:-3885374 MS.gene072777:CDS
AGCTCCAAGACCATCACCCT+TGG 0.522666 5.3:+3885729 None:intergenic
AGCAATTCCTTTCAAGGCAA+GGG 0.527223 5.3:-3885173 MS.gene072777:CDS
GAGTGATAGCAAGGACTACA+AGG 0.528511 5.3:-3886849 MS.gene072777:CDS
GCAGCACCAAGACTCCTAGC+TGG 0.528907 5.3:+3885402 None:intergenic
CCATCACCCTTGGTGTAACC+AGG 0.529590 5.3:+3885739 None:intergenic
CAGTTAAGACAGTGATGTAA+AGG 0.533154 5.3:+3886732 None:intergenic
TTGCCTTGAAAGGAATTGCT+CGG 0.539077 5.3:+3885176 None:intergenic
AACAAACCGAATGTCACCGC+TGG 0.543714 5.3:+3885907 None:intergenic
ATCACTGTCTTAACTGTGAT+GGG 0.546772 5.3:-3886725 MS.gene072777:CDS
GCAAGTGCAGCTCCAATGAA+AGG 0.549715 5.3:+3885223 None:intergenic
GGAGCAAATGTTGTGAATCC+TGG 0.560797 5.3:-3885757 MS.gene072777:CDS
AGGAGCTCAGAGTGATAGCA+AGG 0.561366 5.3:-3886858 MS.gene072777:CDS
GGCTCAAACAAAGGTGCTGG+TGG 0.561806 5.3:+3886821 None:intergenic
GTTAATGCCAGTTCCAGTAA+TGG 0.566105 5.3:+3885425 None:intergenic
CCTGGTTACACCAAGGGTGA+TGG 0.571890 5.3:-3885739 MS.gene072777:CDS
GAGCAATTCCTTTCAAGGCA+AGG 0.588614 5.3:-3885174 MS.gene072777:CDS
CGTTATGAGTTGTATAAAGG+TGG 0.591045 5.3:-3885778 MS.gene072777:CDS
CAGTGTCTTGGAGCTATCTG+TGG 0.593126 5.3:-3885835 MS.gene072777:CDS
ACAGCAAACCCAATTGGAAG+AGG 0.593192 5.3:+3885474 None:intergenic
CAGCACCAAGACTCCTAGCT+GGG 0.594486 5.3:+3885403 None:intergenic
GTAGAATACTGCTCTTGTCA+AGG 0.594791 5.3:+3885867 None:intergenic
ATACAACAGAGACCATGCTT+GGG 0.595986 5.3:-3885373 MS.gene072777:CDS
AGCCAGGAGAGTTGAAGTCA+TGG 0.598254 5.3:-3886802 MS.gene072777:CDS
CCAACAGAGGCACACTTAGA+GGG 0.603003 5.3:+3886689 None:intergenic
TTCCAGCAGTGCAATAGACA+AGG 0.608111 5.3:+3886624 None:intergenic
TGTGGTGCTGGTGTAGTGAA+AGG 0.611215 5.3:-3885817 MS.gene072777:CDS
ATACATGGTCATCCCAAGCA+TGG 0.639779 5.3:+3885361 None:intergenic
GAACTGGCATTAACCCAGCT+AGG 0.641090 5.3:-3885416 MS.gene072777:CDS
TCCAGCAGTGCAATAGACAA+GGG 0.662213 5.3:+3886625 None:intergenic
GTGAATCCTGGTTACACCAA+GGG 0.663817 5.3:-3885745 MS.gene072777:CDS
AATTCCTTGAATACCAACAG+AGG 0.711099 5.3:+3886676 None:intergenic
AGGTGGGCACATAAATCCAG+CGG 0.718916 5.3:-3885923 MS.gene072777:CDS
TGTGAATCCTGGTTACACCA+AGG 0.762851 5.3:-3885746 MS.gene072777:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAATATCATATACTATTTA+GGG + chr5.3:3885993-3886012 None:intergenic 10.0%
!! GTAAAATATTATAAATAGTA+GGG - chr5.3:3885688-3885707 MS.gene072777:CDS 10.0%
!!! AAAATGTGATTTTATTTTAT+AGG + chr5.3:3885763-3885782 None:intergenic 10.0%
!!! AAATGTGATTTTATTTTATA+GGG + chr5.3:3885762-3885781 None:intergenic 10.0%
!! CAAAATATCATATACTATTT+AGG + chr5.3:3885994-3886013 None:intergenic 15.0%
!! CGTAAAATATTATAAATAGT+AGG - chr5.3:3885687-3885706 MS.gene072777:CDS 15.0%
!!! TATTTAATGTTTGAATTTTG+TGG - chr5.3:3886815-3886834 MS.gene072777:CDS 15.0%
!! ACAAAACTGTGAATATTTAT+AGG - chr5.3:3885949-3885968 MS.gene072777:intron 20.0%
!! ACAAAATTCTGAATATTTAC+AGG + chr5.3:3885732-3885751 None:intergenic 20.0%
!! AGATTAATATATAAGATGTG+AGG - chr5.3:3886058-3886077 MS.gene072777:intron 20.0%
!! CAAAACTGTGAATATTTATA+GGG - chr5.3:3885950-3885969 MS.gene072777:intron 20.0%
!! CAAAATTCTGAATATTTACA+GGG + chr5.3:3885731-3885750 None:intergenic 20.0%
!! CAGAACAAAAAATAAATTGA+AGG + chr5.3:3886784-3886803 None:intergenic 20.0%
!! GATTAATATATAAGATGTGA+GGG - chr5.3:3886059-3886078 MS.gene072777:intron 20.0%
!! TTTCATATTATTATTGACGT+CGG + chr5.3:3885574-3885593 None:intergenic 20.0%
!!! AAAATTTCCATCAACATTTT+TGG - chr5.3:3885858-3885877 MS.gene072777:CDS 20.0%
!!! AAAGTGTGATTTTATTTTGT+AGG - chr5.3:3885918-3885937 MS.gene072777:CDS 20.0%
!!! AAGTGTGATTTTATTTTGTA+GGG - chr5.3:3885919-3885938 MS.gene072777:CDS 20.0%
!!! ATATATATGCTTCATTTTTG+TGG - chr5.3:3886553-3886572 MS.gene072777:intron 20.0%
!!! ATGTTTGTATTTGTAGATTT+TGG - chr5.3:3886592-3886611 MS.gene072777:intron 20.0%
!!! TTTAATCTGAAATGTTAGTT+TGG - chr5.3:3885651-3885670 MS.gene072777:CDS 20.0%
! AGTAGGGTTAATTAAGTAAA+TGG - chr5.3:3885704-3885723 MS.gene072777:CDS 25.0%
!! ATGCAGATGGAAAATTTTAT+AGG + chr5.3:3885823-3885842 None:intergenic 25.0%
!! CATTTTCCTTAAGCATTTTA+GGG + chr5.3:3885885-3885904 None:intergenic 25.0%
!! TCATTTTCCTTAAGCATTTT+AGG + chr5.3:3885886-3885905 None:intergenic 25.0%
!! TGCAGATGGAAAATTTTATA+GGG + chr5.3:3885822-3885841 None:intergenic 25.0%
!!! AAATTAAACAGTGGATTTTC+TGG - chr5.3:3886839-3886858 MS.gene072777:CDS 25.0%
!!! AATTAAACAGTGGATTTTCT+GGG - chr5.3:3886840-3886859 MS.gene072777:CDS 25.0%
ATGGTCTCTGTTGTATATTA+TGG + chr5.3:3886714-3886733 None:intergenic 30.0%
GTCAGTATTAGTGTCATATT+CGG + chr5.3:3885548-3885567 None:intergenic 30.0%
TACATAATAATGCAGTGTCT+TGG - chr5.3:3886244-3886263 MS.gene072777:intron 30.0%
TTCTCAGAAAAGAATGCATT+GGG - chr5.3:3885207-3885226 MS.gene072777:CDS 30.0%
TTTCAGATTAAAGACTTGTC+CGG + chr5.3:3885643-3885662 None:intergenic 30.0%
TTTGAACAAAACTAACGAGA+TGG - chr5.3:3886137-3886156 MS.gene072777:intron 30.0%
! GTCCCTATAAAATTTTCCAT+CGG - chr5.3:3885786-3885805 MS.gene072777:CDS 30.0%
! TGCCGATGGAAAATTTTATA+GGG + chr5.3:3885791-3885810 None:intergenic 30.0%
! TTGCCGATGGAAAATTTTAT+AGG + chr5.3:3885792-3885811 None:intergenic 30.0%
! TTTTGTGGCAAATTAAACAG+TGG - chr5.3:3886830-3886849 MS.gene072777:CDS 30.0%
!! GTTGATGGAAATTTTTGACA+AGG + chr5.3:3885853-3885872 None:intergenic 30.0%
AAAAACACAGCAAACCCAAT+TGG + chr5.3:3886626-3886645 None:intergenic 35.0%
AACAAAACTAACGAGATGGT+TGG - chr5.3:3886141-3886160 MS.gene072777:intron 35.0%
AATTCCTTGAATACCAACAG+AGG + chr5.3:3885418-3885437 None:intergenic 35.0%
ACAAAACTAACGAGATGGTT+GGG - chr5.3:3886142-3886161 MS.gene072777:intron 35.0%
ACAAAGTGAAAGGACATACA+TGG + chr5.3:3886748-3886767 None:intergenic 35.0%
ACAAGGACTAAAAATGCAGA+TGG + chr5.3:3885836-3885855 None:intergenic 35.0%
ATCACTGTCTTAACTGTGAT+GGG - chr5.3:3885366-3885385 MS.gene072777:CDS 35.0%
ATGCTTAAGGAAAATGACAC+AGG - chr5.3:3885889-3885908 MS.gene072777:CDS 35.0%
CAACAGCATAACAAAGTGAA+AGG + chr5.3:3886758-3886777 None:intergenic 35.0%
CAGTTAAGACAGTGATGTAA+AGG + chr5.3:3885362-3885381 None:intergenic 35.0%
CGTTATGAGTTGTATAAAGG+TGG - chr5.3:3886313-3886332 MS.gene072777:intron 35.0%
GCTCGTTATGAGTTGTATAA+AGG - chr5.3:3886310-3886329 MS.gene072777:intron 35.0%
GTTCTCAGAAAAGAATGCAT+TGG - chr5.3:3885206-3885225 MS.gene072777:CDS 35.0%
TCAATGTGTCACATAAACAC+CGG - chr5.3:3885621-3885640 MS.gene072777:intron 35.0%
TGCTTAAGGAAAATGACACA+GGG - chr5.3:3885890-3885909 MS.gene072777:CDS 35.0%
TGGTATTCAAGGAATTGCTT+GGG - chr5.3:3885422-3885441 MS.gene072777:CDS 35.0%
TTAATGCCAGTTCCAGTAAT+GGG + chr5.3:3886668-3886687 None:intergenic 35.0%
TTAGGGACCAAAAATGTTGA+TGG + chr5.3:3885868-3885887 None:intergenic 35.0%
TTGGTATTCAAGGAATTGCT+TGG - chr5.3:3885421-3885440 MS.gene072777:CDS 35.0%
TTTGGTCCCTAAAATGCTTA+AGG - chr5.3:3885876-3885895 MS.gene072777:CDS 35.0%
! ACGACACTATTTTATCGTAC+CGG + chr5.3:3886469-3886488 None:intergenic 35.0%
! TTCACTTTGTTATGCTGTTG+TGG - chr5.3:3886758-3886777 MS.gene072777:CDS 35.0%
!! CATGGTCATTTTATAGAGCT+GGG - chr5.3:3885307-3885326 MS.gene072777:intron 35.0%
!! TCATGGTCATTTTATAGAGC+TGG - chr5.3:3885306-3885325 MS.gene072777:intron 35.0%
!!! AATTGGGTTTGCTGTGTTTT+TGG - chr5.3:3886625-3886644 MS.gene072777:CDS 35.0%
AAGATGTGAGGGACTGAATT+AGG - chr5.3:3886070-3886089 MS.gene072777:intron 40.0%
ACAATTCCCATTACTGGAAC+TGG - chr5.3:3886659-3886678 MS.gene072777:CDS 40.0%
AGAGTCTCTTGCATTTCTCT+TGG + chr5.3:3886440-3886459 None:intergenic 40.0%
AGATGTGAGGGACTGAATTA+GGG - chr5.3:3886071-3886090 MS.gene072777:intron 40.0%
AGCAATTCCTTTCAAGGCAA+GGG - chr5.3:3886918-3886937 MS.gene072777:CDS 40.0%
ATAAATCCAGCGGTGACATT+CGG - chr5.3:3886178-3886197 MS.gene072777:intron 40.0%
ATACAACAGAGACCATGCTT+GGG - chr5.3:3886718-3886737 MS.gene072777:CDS 40.0%
ATAGGGACTAAAATTGCCGA+TGG + chr5.3:3885805-3885824 None:intergenic 40.0%
CATCACTGTCTTAACTGTGA+TGG - chr5.3:3885365-3885384 MS.gene072777:CDS 40.0%
GCATCACCATCTTGAAATTG+TGG + chr5.3:3886100-3886119 None:intergenic 40.0%
GTAGAATACTGCTCTTGTCA+AGG + chr5.3:3886227-3886246 None:intergenic 40.0%
GTTAATGCCAGTTCCAGTAA+TGG + chr5.3:3886669-3886688 None:intergenic 40.0%
TATACAACAGAGACCATGCT+TGG - chr5.3:3886717-3886736 MS.gene072777:CDS 40.0%
TATTGCACTGCTGGAATTTC+AGG - chr5.3:3885474-3885493 MS.gene072777:CDS 40.0%
TTGCCTTGAAAGGAATTGCT+CGG + chr5.3:3886918-3886937 None:intergenic 40.0%
TTGGCTACAATTCCCATTAC+TGG - chr5.3:3886653-3886672 MS.gene072777:CDS 40.0%
! TGGTGTAGTGAAAGGTTTTG+AGG - chr5.3:3886282-3886301 MS.gene072777:intron 40.0%
! TTTTGGCACCTCTTCCAATT+GGG - chr5.3:3886609-3886628 MS.gene072777:intron 40.0%
!! AAACAGTGGATTTTCTGGGT+TGG - chr5.3:3886844-3886863 MS.gene072777:CDS 40.0%
!! ATTTTGGCACCTCTTCCAAT+TGG - chr5.3:3886608-3886627 MS.gene072777:intron 40.0%
!! GGTGACATTCGGTTTGTTTT+TGG - chr5.3:3886189-3886208 MS.gene072777:intron 40.0%
!! GGTGTAGTGAAAGGTTTTGA+GGG - chr5.3:3886283-3886302 MS.gene072777:intron 40.0%
!! TAACTGTGATGGGTGTGAAT+AGG - chr5.3:3885376-3885395 MS.gene072777:CDS 40.0%
!!! CATTCGGTTTGTTTTTGGCT+AGG - chr5.3:3886194-3886213 MS.gene072777:intron 40.0%
!!! TGCTGTGTTTTTGGTTCACT+TGG - chr5.3:3886634-3886653 MS.gene072777:CDS 40.0%
AACTCTCCTGGCTCAAACAA+AGG + chr5.3:3885282-3885301 None:intergenic 45.0%
ACAGCAAACCCAATTGGAAG+AGG + chr5.3:3886620-3886639 None:intergenic 45.0%
AGGGAGGAAGATGTTAAGGT+TGG - chr5.3:3885174-3885193 MS.gene072777:CDS 45.0%
ATACATGGTCATCCCAAGCA+TGG + chr5.3:3886733-3886752 None:intergenic 45.0%
ATTAACCCAGCTAGGAGTCT+TGG - chr5.3:3886683-3886702 MS.gene072777:CDS 45.0%
GAAAAGAATGCATTGGGCAC+AGG - chr5.3:3885213-3885232 MS.gene072777:CDS 45.0%
GAATTGCTCGGATCACTATC+TGG + chr5.3:3886906-3886925 None:intergenic 45.0%
GAGCAATTCCTTTCAAGGCA+AGG - chr5.3:3886917-3886936 MS.gene072777:CDS 45.0%
GAGTGATAGCAAGGACTACA+AGG - chr5.3:3885242-3885261 MS.gene072777:CDS 45.0%
GATCCGAGCAATTCCTTTCA+AGG - chr5.3:3886912-3886931 MS.gene072777:CDS 45.0%
GGAGCAAATGTTGTGAATCC+TGG - chr5.3:3886334-3886353 MS.gene072777:intron 45.0%
GGGACTCCACAATTTCAAGA+TGG - chr5.3:3886091-3886110 MS.gene072777:intron 45.0%
GTGAATCCTGGTTACACCAA+GGG - chr5.3:3886346-3886365 MS.gene072777:intron 45.0%
TCCAGCAGTGCAATAGACAA+GGG + chr5.3:3885469-3885488 None:intergenic 45.0%
TGCATTTCTCTTGGCATCAG+TGG + chr5.3:3886431-3886450 None:intergenic 45.0%
TGTGAATCCTGGTTACACCA+AGG - chr5.3:3886345-3886364 MS.gene072777:intron 45.0%
TGTGCCTCTGTTGGTATTCA+AGG - chr5.3:3885411-3885430 MS.gene072777:CDS 45.0%
TTCCAGCAGTGCAATAGACA+AGG + chr5.3:3885470-3885489 None:intergenic 45.0%
! CAAGGAATTGCTTGGGCTTT+TGG - chr5.3:3885429-3885448 MS.gene072777:CDS 45.0%
! TTCTGGGTTGGACCTTTCAT+TGG - chr5.3:3886856-3886875 MS.gene072777:CDS 45.0%
AACAAACCGAATGTCACCGC+TGG + chr5.3:3886187-3886206 None:intergenic 50.0%
AGCCAGGAGAGTTGAAGTCA+TGG - chr5.3:3885289-3885308 MS.gene072777:intron 50.0%
AGGAGCTCAGAGTGATAGCA+AGG - chr5.3:3885233-3885252 MS.gene072777:CDS 50.0%
AGGTGGGCACATAAATCCAG+CGG - chr5.3:3886168-3886187 MS.gene072777:intron 50.0%
CAGTGTCTTGGAGCTATCTG+TGG - chr5.3:3886256-3886275 MS.gene072777:intron 50.0%
CTAACGAGATGGTTGGGAAC+AGG - chr5.3:3886148-3886167 MS.gene072777:intron 50.0%
GAACTGGCATTAACCCAGCT+AGG - chr5.3:3886675-3886694 MS.gene072777:CDS 50.0%
GACCATGACTTCAACTCTCC+TGG + chr5.3:3885294-3885313 None:intergenic 50.0%
GCAAGTGCAGCTCCAATGAA+AGG + chr5.3:3886871-3886890 None:intergenic 50.0%
GGAGAGGGAGGAAGATGTTA+AGG - chr5.3:3885170-3885189 MS.gene072777:CDS 50.0%
GGTCTTGGAGCTGAGATTGT+TGG - chr5.3:3886373-3886392 MS.gene072777:intron 50.0%
TGCAAGAGACTCTCACGTTC+CGG - chr5.3:3886447-3886466 MS.gene072777:intron 50.0%
! ACCAACAGAGGCACACTTAG+AGG + chr5.3:3885406-3885425 None:intergenic 50.0%
! CCAACAGAGGCACACTTAGA+GGG + chr5.3:3885405-3885424 None:intergenic 50.0%
! GGAATTGCTTGGGCTTTTGG+TGG - chr5.3:3885432-3885451 MS.gene072777:CDS 50.0%
! TACACCAAGGGTGATGGTCT+TGG - chr5.3:3886358-3886377 MS.gene072777:intron 50.0%
!! TGTGGTGCTGGTGTAGTGAA+AGG - chr5.3:3886274-3886293 MS.gene072777:intron 50.0%
ACGAGATGGTTGGGAACAGG+TGG - chr5.3:3886151-3886170 MS.gene072777:intron 55.0%
AGCTCCAAGACCATCACCCT+TGG + chr5.3:3886365-3886384 None:intergenic 55.0%
CAGCACCAAGACTCCTAGCT+GGG + chr5.3:3886691-3886710 None:intergenic 55.0%
CCCTCTAAGTGTGCCTCTGT+TGG - chr5.3:3885402-3885421 MS.gene072777:CDS 55.0%
CCTGGTTACACCAAGGGTGA+TGG - chr5.3:3886352-3886371 MS.gene072777:intron 55.0%
CGAGATGGTTGGGAACAGGT+GGG - chr5.3:3886152-3886171 MS.gene072777:intron 55.0%
CTTGGAGCTATCTGTGGTGC+TGG - chr5.3:3886262-3886281 MS.gene072777:intron 55.0%
GCCCTTGTCTATTGCACTGC+TGG - chr5.3:3885465-3885484 MS.gene072777:CDS 55.0%
! CCAGCACCTTTGTTTGAGCC+AGG - chr5.3:3885273-3885292 MS.gene072777:intron 55.0%
! CCATCACCCTTGGTGTAACC+AGG + chr5.3:3886355-3886374 None:intergenic 55.0%
! CCTGGCTCAAACAAAGGTGC+TGG + chr5.3:3885276-3885295 None:intergenic 55.0%
!! GGCTCAAACAAAGGTGCTGG+TGG + chr5.3:3885273-3885292 None:intergenic 55.0%
GCAGCACCAAGACTCCTAGC+TGG + chr5.3:3886692-3886711 None:intergenic 60.0%


Chromosome Type Strat End Strand Name
chr5.3 gene 3885168 3886945 3885168 ID=MS.gene072777
chr5.3 mRNA 3885168 3886945 3885168 ID=MS.gene072777.t1;Parent=MS.gene072777
chr5.3 exon 3886618 3886945 3886618 ID=MS.gene072777.t1.exon1;Parent=MS.gene072777.t1
chr5.3 CDS 3886618 3886945 3886618 ID=cds.MS.gene072777.t1;Parent=MS.gene072777.t1
chr5.3 exon 3885645 3885943 3885645 ID=MS.gene072777.t1.exon2;Parent=MS.gene072777.t1
chr5.3 CDS 3885645 3885943 3885645 ID=cds.MS.gene072777.t1;Parent=MS.gene072777.t1
chr5.3 exon 3885365 3885505 3885365 ID=MS.gene072777.t1.exon3;Parent=MS.gene072777.t1
chr5.3 CDS 3885365 3885505 3885365 ID=cds.MS.gene072777.t1;Parent=MS.gene072777.t1
chr5.3 exon 3885168 3885263 3885168 ID=MS.gene072777.t1.exon4;Parent=MS.gene072777.t1
chr5.3 CDS 3885168 3885263 3885168 ID=cds.MS.gene072777.t1;Parent=MS.gene072777.t1
Gene Sequence

>MS.gene072777

ATGGAGAGGGAGGAAGATGTTAAGGTTGGAGCAAACAAGTTCTCAGAAAAGAATGCATTGGGCACAGGAGCTCAGAGTGATAGCAAGGACTACAAGGAAGCACCACCAGCACCTTTGTTTGAGCCAGGAGAGTTGAAGTCATGGTCATTTTATAGAGCTGGGATTGCTGAGTTTGTTGCAACTTTCTTGTTCCTTTACATCACTGTCTTAACTGTGATGGGTGTGAATAGGTCACCCTCTAAGTGTGCCTCTGTTGGTATTCAAGGAATTGCTTGGGCTTTTGGTGGTATGATTTTTGCCCTTGTCTATTGCACTGCTGGAATTTCAGGTAACTTCATTTTCTTTTCTTTACTTTTTTATGAATCATGAGACTTACACCGAATATGACACTAATACTGACACGCCGACGTCAATAATAATATGAAAATGAGTAATTGAATGTAATCACATGTTTCAATGTGTCACATAAACACCGGACAAGTCTTTAATCTGAAATGTTAGTTTGGTATGTAGATTCATCGTAAAATATTATAAATAGTAGGGTTAATTAAGTAAATGGTCCCTGTAAATATTCAGAATTTTGTTTTTAGTCCCTATAAAATAAAATCACATTTTTTAGTCCCTATAAAATTTTCCATCGGCAATTTTAGTCCCTATAAAATTTTCCATCTGCATTTTTAGTCCTTGTCAAAAATTTCCATCAACATTTTTGGTCCCTAAAATGCTTAAGGAAAATGACACAGGGACTAAAAAGTGTGATTTTATTTTGTAGGGACTAAAAACAAAACTGTGAATATTTATAGGGACTAAAAACTTAATTAACCCTAAATAGTATATGATATTTTGTAAATTTAAGAGATTAATATGATGACTTGTCAAAAAAAAAAAAGAGATTAATATATAAGATGTGAGGGACTGAATTAGGGACTCCACAATTTCAAGATGGTGATGCACTATAAATTATTTTGCTTTGAACAAAACTAACGAGATGGTTGGGAACAGGTGGGCACATAAATCCAGCGGTGACATTCGGTTTGTTTTTGGCTAGGAAGCTGTCCTTGACAAGAGCAGTATTCTACATAATAATGCAGTGTCTTGGAGCTATCTGTGGTGCTGGTGTAGTGAAAGGTTTTGAGGGTAATGCTCGTTATGAGTTGTATAAAGGTGGAGCAAATGTTGTGAATCCTGGTTACACCAAGGGTGATGGTCTTGGAGCTGAGATTGTTGGTACTTTTGTTCTTGTCTACACTGTCTTCTCTGCCACTGATGCCAAGAGAAATGCAAGAGACTCTCACGTTCCGGTACGATAAAATAGTGTCGTAAGATGAATATTTGTTTATAATAAAAAGTGTGTTAAAGAGTTGTATTTCTAGCATCTCTATGATATATATATGCTTCATTTTTGTGGACTAAGTAGTAATGTGATGTTTGTATTTGTAGATTTTGGCACCTCTTCCAATTGGGTTTGCTGTGTTTTTGGTTCACTTGGCTACAATTCCCATTACTGGAACTGGCATTAACCCAGCTAGGAGTCTTGGTGCTGCCATAATATACAACAGAGACCATGCTTGGGATGACCATGTATGTCCTTTCACTTTGTTATGCTGTTGTGGCCTTCAATTTATTTTTTGTTCTGCTTAAGTGACTTATTTAATGTTTGAATTTTGTGGCAAATTAAACAGTGGATTTTCTGGGTTGGACCTTTCATTGGAGCTGCACTTGCTGCATTATATCACCAGATAGTGATCCGAGCAATTCCTTTCAAGGCAAGGGAGTAA

Protein sequence

>MS.gene072777.t1

MEREEDVKVGANKFSEKNALGTGAQSDSKDYKEAPPAPLFEPGELKSWSFYRAGIAEFVATFLFLYITVLTVMGVNRSPSKCASVGIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSLTRAVFYIIMQCLGAICGAGVVKGFEGNARYELYKGGANVVNPGYTKGDGLGAEIVGTFVLVYTVFSATDAKRNARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAIIYNRDHAWDDHWIFWVGPFIGAALAALYHQIVIRAIPFKARE